AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1299740

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1299740 MtrunA17_Chr4g0060681 97.319 373 10 0 1 373 1 373 0.0 744
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1299740 AT1G74640.1 70.538 353 98 3 20 370 20 368 0.0 519

Find 137 sgRNAs with CRISPR-Local

Find 307 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCAACTGCAGGCGCCTTTA+AGG 0.104317 8_3:-61041799 None:intergenic
TTGGCATCATCAAGATATTT+TGG 0.129202 8_3:-61040119 None:intergenic
CAATTCTTGCAACAGAATTT+TGG 0.177594 8_3:+61042212 Msa1299740:CDS
AGTAGTCCGTGCTGCGAAAA+AGG 0.196098 8_3:+61041378 Msa1299740:CDS
TGATATAATGAAAAGGTTTA+AGG 0.201671 8_3:-61038696 None:intergenic
AAGAAAGGGTTTGCGAAATT+TGG 0.205587 8_3:-61038812 None:intergenic
CCTTCAACTCTTTGCAGATT+TGG 0.235687 8_3:+61042022 Msa1299740:CDS
AGTCCAGTGGGAAATGATTT+TGG 0.244831 8_3:-61042404 None:intergenic
GGACAACCATGTAGCTAAAT+TGG 0.265640 8_3:+61038579 Msa1299740:five_prime_UTR
AGTTGAAGCCCGGATCTTTA+AGG 0.270738 8_3:-61038860 None:intergenic
GGTCCCCTTCCTATCGTATT+TGG 0.283801 8_3:+61041448 Msa1299740:CDS
ATGGCTGGTGTCACGTTATC+AGG 0.302525 8_3:-61041897 None:intergenic
TGTTAAACTAGACAACAATT+TGG 0.317013 8_3:+61041324 Msa1299740:intron
TCTTCTAAGAGGCACCTTAA+AGG 0.331435 8_3:+61041785 Msa1299740:CDS
TGAAATTCTGCATCCTCTAA+TGG 0.335653 8_3:+61038738 Msa1299740:exon
TTACCCGCGGCTTTCTTGAC+TGG 0.345149 8_3:+61041966 Msa1299740:CDS
TTTAATAAATATTTATTATG+AGG 0.349662 8_3:+61040068 Msa1299740:CDS
TCAGCATTGTAATCAATCTT+TGG 0.350565 8_3:-61040267 None:intergenic
TAACTGTTTCCACAAATTAG+AGG 0.361127 8_3:+61042462 Msa1299740:three_prime_UTR
ATAAACAGAGTGAGAAAGAA+AGG 0.363602 8_3:-61038827 None:intergenic
TTCTTAAACCCTTAAAGATC+CGG 0.373241 8_3:+61038851 Msa1299740:CDS
CAACTAAAGGGTCTCCTAAA+AGG 0.373750 8_3:+61042072 Msa1299740:CDS
ACCTTAAAGGCGCCTGCAGT+TGG 0.374128 8_3:+61041798 Msa1299740:CDS
TTAGTTGATACAACAAATAC+TGG 0.382699 8_3:-61042056 None:intergenic
GCAACAGCAGCTATAGCTTT+GGG 0.386160 8_3:-61041412 None:intergenic
GTTAGCTATGAAGATTCATA+TGG 0.386956 8_3:-61042515 None:intergenic
ATTGTTGATTGGCCTGGTCT+AGG 0.387080 8_3:+61040231 Msa1299740:CDS
CCAAATCTGCAAAGAGTTGA+AGG 0.392385 8_3:-61042022 None:intergenic
TGCAACAGCAGCTATAGCTT+TGG 0.393323 8_3:-61041413 None:intergenic
ATAGTTATTCTCACCTTCAA+TGG 0.393751 8_3:-61038925 None:intergenic
GCTGTTGCACCCACTTGGTC+TGG 0.395668 8_3:+61041427 Msa1299740:CDS
GTTGAAGCCCGGATCTTTAA+GGG 0.404794 8_3:-61038859 None:intergenic
ACCGCACTACTATTGTTGAT+TGG 0.409875 8_3:+61040220 Msa1299740:CDS
CCTTAAAGGCGCCTGCAGTT+GGG 0.416753 8_3:+61041799 Msa1299740:CDS
TAGTTATTCTCACCTTCAAT+GGG 0.421788 8_3:-61038924 None:intergenic
TGGAAACAGTTATCTTTCAC+TGG 0.425630 8_3:-61042451 None:intergenic
AACATGTCGCCTCTAATTTG+TGG 0.430514 8_3:-61042471 None:intergenic
GTTGCAGAGAGTGCCATTAG+AGG 0.440819 8_3:-61038751 None:intergenic
GTATTTGTTGTATCAACTAA+AGG 0.441722 8_3:+61042059 Msa1299740:CDS
TATTTGTTGTATCAACTAAA+GGG 0.442235 8_3:+61042060 Msa1299740:CDS
GAATAGTGGTAGGGGCCATC+AGG 0.451838 8_3:-61042577 None:intergenic
GGTTGAAGAAAGATAGTAAT+GGG 0.452915 8_3:+61042307 Msa1299740:three_prime_UTR
TGACAAATCTTCCCCATTGA+AGG 0.454945 8_3:+61038912 Msa1299740:CDS
AACAGTGCTCACATCAGAAA+TGG 0.454974 8_3:-61040142 None:intergenic
GCTGAGATGGAAGCTCTTAA+CGG 0.459166 8_3:+61042101 Msa1299740:CDS
GCGTAAAGGTTAGAACTTGA+AGG 0.462332 8_3:-61038790 None:intergenic
AGCTCTTCCGCGACTAAAGC+AGG 0.462416 8_3:-61042185 None:intergenic
CTATCACCAATTTAGCTACA+TGG 0.472567 8_3:-61038585 None:intergenic
ACATAAATATGTATACCCTT+TGG 0.473138 8_3:-61042331 None:intergenic
TGATTACAATGCTGACGTCT+TGG 0.475636 8_3:+61040275 Msa1299740:CDS
TGCACAGGCAATAATATTAG+TGG 0.476061 8_3:+61042285 Msa1299740:three_prime_UTR
TCAACTCTTTGCAGATTTGG+AGG 0.476813 8_3:+61042025 Msa1299740:CDS
TCTTAAACCCTTAAAGATCC+GGG 0.480277 8_3:+61038852 Msa1299740:CDS
AAGAGCTTCCATCTCAGCCT+TGG 0.482412 8_3:-61042096 None:intergenic
TTGTTTCCATGCTGGAATCT+CGG 0.482856 8_3:-61041471 None:intergenic
TAGCTGCTGTTGCACCCACT+TGG 0.485030 8_3:+61041422 Msa1299740:CDS
GTTTGCGAAATTTGGCGTAA+AGG 0.485098 8_3:-61038804 None:intergenic
AAGAGACATTGGAATAATCA+AGG 0.490245 8_3:-61038885 None:intergenic
ACTACTATTGTTGATTGGCC+TGG 0.490253 8_3:+61040225 Msa1299740:CDS
ATCAGACTAGCAACTGGCAG+TGG 0.495627 8_3:+61040031 Msa1299740:intron
TGAAGAATGATATAATGAAA+AGG 0.497054 8_3:-61038703 None:intergenic
TAAAAGGTCCAAGGCTGAGA+TGG 0.498935 8_3:+61042088 Msa1299740:CDS
CAACTCTTTGCAGATTTGGA+GGG 0.500215 8_3:+61042026 Msa1299740:CDS
GAAGCTCTTAACGGAGCTAA+AGG 0.503984 8_3:+61042110 Msa1299740:CDS
GGAACATGTGAAGGAGAGTT+CGG 0.504267 8_3:+61040089 Msa1299740:CDS
CATGTGATTTGTACTGCGAT+TGG 0.504645 8_3:-61041863 None:intergenic
AGGTTAGAACTTGAAGGTGT+AGG 0.511708 8_3:-61038784 None:intergenic
TAAACAGAGTGAGAAAGAAA+GGG 0.514527 8_3:-61038826 None:intergenic
TAAAGGAGTGAGCAAGTTTG+TGG 0.516133 8_3:+61042127 Msa1299740:CDS
ATAGTACCTTGTTTCCATGC+TGG 0.516722 8_3:-61041479 None:intergenic
TTTGTCACTGGAAGAGACAT+TGG 0.523723 8_3:-61038896 None:intergenic
TGCATATCTGCTTTCGACAA+TGG 0.528904 8_3:-61041916 None:intergenic
AAGATAGTAATGGGACCAAA+GGG 0.531274 8_3:+61042316 Msa1299740:three_prime_UTR
CAAAGATACTGAATAGTGGT+AGG 0.532014 8_3:-61042587 None:intergenic
TGGTGTCACGTTATCAGGAT+TGG 0.532092 8_3:-61041892 None:intergenic
GATTTCATCAATTCACCCAA+TGG 0.535580 8_3:+61040312 Msa1299740:CDS
GACAGGTATGGTCTTCTAAG+AGG 0.537611 8_3:+61041774 Msa1299740:intron
GAAGACATTGCTCAACGTAA+TGG 0.538261 8_3:+61040186 Msa1299740:CDS
TTAGCTATGAAGATTCATAT+GGG 0.539283 8_3:-61042514 None:intergenic
AAAGATAGTAATGGGACCAA+AGG 0.540804 8_3:+61042315 Msa1299740:three_prime_UTR
TACACCATCCACCCAACTGC+AGG 0.541976 8_3:-61041810 None:intergenic
AGCAAGTTTGTGGAAGTGCC+TGG 0.543593 8_3:+61042137 Msa1299740:CDS
GGCGCCTGCAGTTGGGTGGA+TGG 0.552084 8_3:+61041806 Msa1299740:CDS
CTCGGCCAAATACGATAGGA+AGG 0.553390 8_3:-61041453 None:intergenic
TGGTGCTCTTCTTCCACAAG+AGG 0.557293 8_3:+61042157 Msa1299740:CDS
TATCTGCTTTCGACAATGGC+TGG 0.559916 8_3:-61041912 None:intergenic
CACGGGATGTTACAGGGTCT+AGG 0.561594 8_3:-61041992 None:intergenic
GGCACAAAGATACTGAATAG+TGG 0.562383 8_3:-61042591 None:intergenic
CAATGGGGAAGATTTGTCAC+TGG 0.569238 8_3:-61038908 None:intergenic
CACATGGTACTTGTGTATGT+TGG 0.570576 8_3:+61042255 Msa1299740:three_prime_UTR
AGGAAGGGGACCAGACCAAG+TGG 0.570715 8_3:-61041437 None:intergenic
TTATTATGAGGAACATGTGA+AGG 0.571752 8_3:+61040080 Msa1299740:CDS
TTGCCAAAATCATTTCCCAC+TGG 0.573272 8_3:+61042401 Msa1299740:three_prime_UTR
AATCAAGGGTAGTTGAAGCC+CGG 0.574487 8_3:-61038870 None:intergenic
GAGTTGAAGGAACTCCTCAC+GGG 0.577784 8_3:-61042009 None:intergenic
CGGCCAAATACGATAGGAAG+GGG 0.580257 8_3:-61041451 None:intergenic
GCACAGGCAATAATATTAGT+GGG 0.582169 8_3:+61042286 Msa1299740:three_prime_UTR
TCTTGTGGAAGAAGAGCACC+AGG 0.583551 8_3:-61042155 None:intergenic
TTCTGATGTGAGCACTGTTG+AGG 0.584543 8_3:+61040146 Msa1299740:CDS
AGAGTTGAAGGAACTCCTCA+CGG 0.588545 8_3:-61042010 None:intergenic
GGCCATCAGGATACCCACAC+AGG 0.589117 8_3:-61042564 None:intergenic
AAAGATACTGAATAGTGGTA+GGG 0.593350 8_3:-61042586 None:intergenic
AAAGCAGGATACTCCTCTTG+TGG 0.594658 8_3:-61042170 None:intergenic
AAGATACTGAATAGTGGTAG+GGG 0.596717 8_3:-61042585 None:intergenic
GTATACATATTTATGTAATG+TGG 0.599384 8_3:+61042338 Msa1299740:three_prime_UTR
CGATCAGAATAACCTAGACC+AGG 0.599579 8_3:-61040243 None:intergenic
AATCTAATCAAGTCCACGGT+CGG 0.599712 8_3:+61038643 Msa1299740:five_prime_UTR
GTGCTCACATCAGAAATGGT+TGG 0.600768 8_3:-61040138 None:intergenic
GGAAACAGTTATCTTTCACT+GGG 0.602157 8_3:-61042450 None:intergenic
AGAGACATTGGAATAATCAA+GGG 0.606155 8_3:-61038884 None:intergenic
AGGGTCTCCTAAAAGGTCCA+AGG 0.606471 8_3:+61042079 Msa1299740:CDS
GAATCTCGGCCAAATACGAT+AGG 0.608486 8_3:-61041457 None:intergenic
TAAAGGCGCCTGCAGTTGGG+TGG 0.609424 8_3:+61041802 Msa1299740:CDS
GAGATTCCAGCATGGAAACA+AGG 0.610360 8_3:+61041473 Msa1299740:CDS
AGTCCAGTCAAGAAAGCCGC+GGG 0.612625 8_3:-61041969 None:intergenic
AAGTCAAACATCAGTCCAGT+GGG 0.614257 8_3:-61042416 None:intergenic
ATAAAATCTAATCAAGTCCA+CGG 0.616862 8_3:+61038639 Msa1299740:five_prime_UTR
ACTCCTCACGGGATGTTACA+GGG 0.624393 8_3:-61041998 None:intergenic
TCGGCCAAATACGATAGGAA+GGG 0.628777 8_3:-61041452 None:intergenic
CAAGTCAAACATCAGTCCAG+TGG 0.629595 8_3:-61042417 None:intergenic
GGGTTGAAGAAAGATAGTAA+TGG 0.642136 8_3:+61042306 Msa1299740:three_prime_UTR
TATGTTGGTGAAGCTTGCAC+AGG 0.645457 8_3:+61042270 Msa1299740:three_prime_UTR
GAGTCCAGTCAAGAAAGCCG+CGG 0.650624 8_3:-61041970 None:intergenic
ACCCTGTGTGGGTATCCTGA+TGG 0.657405 8_3:+61042562 Msa1299740:three_prime_UTR
ATGTGAGCACTGTTGAGGAG+TGG 0.662423 8_3:+61040151 Msa1299740:CDS
TAGCTATGAAGATTCATATG+GGG 0.663913 8_3:-61042513 None:intergenic
GTCGCTTAAAAGTTGACACA+TGG 0.670730 8_3:+61042239 Msa1299740:exon
GCCAATCAACAATAGTAGTG+CGG 0.675154 8_3:-61040221 None:intergenic
GGAGTATCCTGCTTTAGTCG+CGG 0.676120 8_3:+61042178 Msa1299740:CDS
AATGCAGAAAATACCGACCG+TGG 0.681763 8_3:-61038656 None:intergenic
GGAAGGGGACCAGACCAAGT+GGG 0.693482 8_3:-61041436 None:intergenic
GCCATCAGGATACCCACACA+GGG 0.702305 8_3:-61042563 None:intergenic
AATGGTCCAGTAAAACAACC+AGG 0.714717 8_3:+61040330 Msa1299740:CDS
AGTTATTCTCACCTTCAATG+GGG 0.717725 8_3:-61038923 None:intergenic
ATTTGGCCGAGATTCCAGCA+TGG 0.719142 8_3:+61041465 Msa1299740:CDS
AGACCCTGTAACATCCCGTG+AGG 0.736244 8_3:+61041995 Msa1299740:CDS
TATGCATTGACAAAACGACA+AGG 0.775132 8_3:+61041933 Msa1299740:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTATTTATTTTTTAAT+TGG + chr8_3:61038960-61038979 Msa1299740:intron 0.0%
!! AAAATGAAAGAAAAAAAAAA+GGG - chr8_3:61040009-61040028 None:intergenic 10.0%
!! AAAAAATAGTGTTAGAAAAA+CGG + chr8_3:61038547-61038566 Msa1299740:five_prime_UTR 15.0%
!! AGTAAAATGACAAAAATTTA+AGG - chr8_3:61038994-61039013 None:intergenic 15.0%
!!! TGATTTTTTTTAAAAGCAAT+TGG + chr8_3:61039014-61039033 Msa1299740:intron 15.0%
!! GTTACTCTTAAATAAATAAA+AGG - chr8_3:61039789-61039808 None:intergenic 15.0%
!! AATATGGAAGAAAAAAAAAT+CGG - chr8_3:61039969-61039988 None:intergenic 15.0%
!!! TTTTTTTTTCTTCCATATTT+TGG + chr8_3:61039970-61039989 Msa1299740:intron 15.0%
!! GAAAATGAAAGAAAAAAAAA+AGG - chr8_3:61040010-61040029 None:intergenic 15.0%
!!! TATTATTTATAAGCTTGTTA+AGG - chr8_3:61040741-61040760 None:intergenic 15.0%
!! ATTAGATGGTAATATATAAA+AGG + chr8_3:61041572-61041591 Msa1299740:intron 15.0%
!! TTAGATGGTAATATATAAAA+GGG + chr8_3:61041573-61041592 Msa1299740:intron 15.0%
!! TTAAGGTTAATAAAAAACCA+CGG - chr8_3:61038682-61038701 None:intergenic 20.0%
!! TGATATAATGAAAAGGTTTA+AGG - chr8_3:61038699-61038718 None:intergenic 20.0%
!! TGAAGAATGATATAATGAAA+AGG - chr8_3:61038706-61038725 None:intergenic 20.0%
!! TAAATAAATAACTGATAGAG+AGG - chr8_3:61038951-61038970 None:intergenic 20.0%
!! GATTATTCATAATTCAAAGT+TGG + chr8_3:61039046-61039065 Msa1299740:intron 20.0%
!! TTACATGTATATCTAATTGT+TGG + chr8_3:61039165-61039184 Msa1299740:intron 20.0%
!! CTTAAATAAATAAAAGGCAA+GGG - chr8_3:61039783-61039802 None:intergenic 20.0%
!! TCTTAAATAAATAAAAGGCA+AGG - chr8_3:61039784-61039803 None:intergenic 20.0%
!! GATTTATACTCAATTTAAAG+AGG + chr8_3:61039937-61039956 Msa1299740:intron 20.0%
!!! ATTCCTCCTTTTAATTATTT+TGG + chr8_3:61040491-61040510 Msa1299740:intron 20.0%
!!! TTCCTCCTTTTAATTATTTT+GGG + chr8_3:61040492-61040511 Msa1299740:intron 20.0%
!! AACTACCCAAAATAATTAAA+AGG - chr8_3:61040500-61040519 None:intergenic 20.0%
!!! GGTTTATTTTCTTTATTGAT+TGG + chr8_3:61040902-61040921 Msa1299740:intron 20.0%
!!! TTATTTTCTTTATTGATTGG+TGG + chr8_3:61040905-61040924 Msa1299740:intron 20.0%
!!! TATTTTCTTTATTGATTGGT+GGG + chr8_3:61040906-61040925 Msa1299740:intron 20.0%
!! AAAAAAATGCTCATTGAAAA+GGG - chr8_3:61041512-61041531 None:intergenic 20.0%
!! TAGATGGTAATATATAAAAG+GGG + chr8_3:61041574-61041593 Msa1299740:intron 20.0%
!!! TATTTGTTGTATCAACTAAA+GGG + chr8_3:61042060-61042079 Msa1299740:CDS 20.0%
!! GTATACATATTTATGTAATG+TGG + chr8_3:61042338-61042357 Msa1299740:three_prime_UTR 20.0%
!! GACTTGATTAGATTTTATGT+TGG - chr8_3:61038637-61038656 None:intergenic 25.0%
! ATAAAATCTAATCAAGTCCA+CGG + chr8_3:61038639-61038658 Msa1299740:five_prime_UTR 25.0%
! ACGGTTAATCAACAAATTAA+TGG + chr8_3:61039134-61039153 Msa1299740:intron 25.0%
!! CATTTTAGATCAGTATAGTT+CGG + chr8_3:61040422-61040441 Msa1299740:intron 25.0%
! TACCCAAAATAATTAAAAGG+AGG - chr8_3:61040497-61040516 None:intergenic 25.0%
!!! TTTTTCAGTTGAGAAGTTTA+TGG + chr8_3:61040545-61040564 Msa1299740:intron 25.0%
! ATATTTGAGAAATTGTGCTA+AGG + chr8_3:61040599-61040618 Msa1299740:intron 25.0%
! TATTTGAGAAATTGTGCTAA+GGG + chr8_3:61040600-61040619 Msa1299740:intron 25.0%
! AAAGCTACATAAAAGACTTA+GGG - chr8_3:61040830-61040849 None:intergenic 25.0%
! AAAAGCTACATAAAAGACTT+AGG - chr8_3:61040831-61040850 None:intergenic 25.0%
!! TAAGTCTTTTATGTAGCTTT+TGG + chr8_3:61040830-61040849 Msa1299740:intron 25.0%
! TGTTAAACTAGACAACAATT+TGG + chr8_3:61041324-61041343 Msa1299740:intron 25.0%
! AAAAAATGCTCATTGAAAAG+GGG - chr8_3:61041511-61041530 None:intergenic 25.0%
! GAAAAAAATGCTCATTGAAA+AGG - chr8_3:61041513-61041532 None:intergenic 25.0%
!!! GATTTCTAGTTTCTATTAGA+TGG + chr8_3:61041558-61041577 Msa1299740:intron 25.0%
! AGATGGTAATATATAAAAGG+GGG + chr8_3:61041575-61041594 Msa1299740:intron 25.0%
!! TTAGTTGATACAACAAATAC+TGG - chr8_3:61042059-61042078 None:intergenic 25.0%
!!! GTATTTGTTGTATCAACTAA+AGG + chr8_3:61042059-61042078 Msa1299740:CDS 25.0%
! ACATAAATATGTATACCCTT+TGG - chr8_3:61042334-61042353 None:intergenic 25.0%
! TTAGCTATGAAGATTCATAT+GGG - chr8_3:61042517-61042536 None:intergenic 25.0%
!! TTAGAAAAACGGTGTTGTTT+CGG + chr8_3:61038558-61038577 Msa1299740:five_prime_UTR 30.0%
TAAACAGAGTGAGAAAGAAA+GGG - chr8_3:61038829-61038848 None:intergenic 30.0%
ATAAACAGAGTGAGAAAGAA+AGG - chr8_3:61038830-61038849 None:intergenic 30.0%
TTCTTAAACCCTTAAAGATC+CGG + chr8_3:61038851-61038870 Msa1299740:CDS 30.0%
AGAGACATTGGAATAATCAA+GGG - chr8_3:61038887-61038906 None:intergenic 30.0%
AAGAGACATTGGAATAATCA+AGG - chr8_3:61038888-61038907 None:intergenic 30.0%
TAGTTATTCTCACCTTCAAT+GGG - chr8_3:61038927-61038946 None:intergenic 30.0%
ATAGTTATTCTCACCTTCAA+TGG - chr8_3:61038928-61038947 None:intergenic 30.0%
AAGGAAGAAGATCATAAACA+TGG + chr8_3:61039216-61039235 Msa1299740:intron 30.0%
TAACGTGAAAAACGAGAAAT+CGG + chr8_3:61039311-61039330 Msa1299740:intron 30.0%
! CCTAAAGTGTTAAACACAAA+TGG - chr8_3:61039617-61039636 None:intergenic 30.0%
CCATTTGTGTTTAACACTTT+AGG + chr8_3:61039614-61039633 Msa1299740:intron 30.0%
GAAGAAAAAAAAATCGGATC+TGG - chr8_3:61039963-61039982 None:intergenic 30.0%
TTATTATGAGGAACATGTGA+AGG + chr8_3:61040080-61040099 Msa1299740:CDS 30.0%
!! ATCATCAAGATATTTTGGGA+AGG - chr8_3:61040117-61040136 None:intergenic 30.0%
! TGGCATCATCAAGATATTTT+GGG - chr8_3:61040121-61040140 None:intergenic 30.0%
! TTGGCATCATCAAGATATTT+TGG - chr8_3:61040122-61040141 None:intergenic 30.0%
TCAGCATTGTAATCAATCTT+TGG - chr8_3:61040270-61040289 None:intergenic 30.0%
!!! TTATTTTGGGTAGTTTCTCT+TGG + chr8_3:61040505-61040524 Msa1299740:intron 30.0%
CTAAAATAAGCCAATCCAAA+CGG + chr8_3:61040803-61040822 Msa1299740:intron 30.0%
AATACAATTCCTAATGTGCT+TGG + chr8_3:61040861-61040880 Msa1299740:intron 30.0%
! TTTATTGATTGGTGGGTATT+AGG + chr8_3:61040913-61040932 Msa1299740:intron 30.0%
GATCTACAGTTAACTATTGT+TGG + chr8_3:61040987-61041006 Msa1299740:intron 30.0%
TGATTTGAAAACTATACTGG+TGG - chr8_3:61041069-61041088 None:intergenic 30.0%
CCATGATTTGAAAACTATAC+TGG - chr8_3:61041072-61041091 None:intergenic 30.0%
! CCAGTATAGTTTTCAAATCA+TGG + chr8_3:61041069-61041088 Msa1299740:intron 30.0%
TGCAAAATTCCATCAGATAA+CGG - chr8_3:61041139-61041158 None:intergenic 30.0%
! TCCAATGATTGTCTTTTGTT+TGG + chr8_3:61041211-61041230 Msa1299740:intron 30.0%
!! CCAATGATTGTCTTTTGTTT+GGG + chr8_3:61041212-61041231 Msa1299740:intron 30.0%
GTGACATATTCAACTAATCA+TGG - chr8_3:61041263-61041282 None:intergenic 30.0%
!! GACAACAATTTGGTGATTTT+TGG + chr8_3:61041334-61041353 Msa1299740:intron 30.0%
!! AACAATTTGGTGATTTTTGG+TGG + chr8_3:61041337-61041356 Msa1299740:CDS 30.0%
AAAACAAGTTATCACCTATC+AGG - chr8_3:61041727-61041746 None:intergenic 30.0%
! CAATTCTTGCAACAGAATTT+TGG + chr8_3:61042212-61042231 Msa1299740:CDS 30.0%
GGTTGAAGAAAGATAGTAAT+GGG + chr8_3:61042307-61042326 Msa1299740:three_prime_UTR 30.0%
TAACTGTTTCCACAAATTAG+AGG + chr8_3:61042462-61042481 Msa1299740:three_prime_UTR 30.0%
TAGCTATGAAGATTCATATG+GGG - chr8_3:61042516-61042535 None:intergenic 30.0%
GTTAGCTATGAAGATTCATA+TGG - chr8_3:61042518-61042537 None:intergenic 30.0%
!!! ACATTTTAAAATACCCTGTG+TGG + chr8_3:61042550-61042569 Msa1299740:three_prime_UTR 30.0%
!!! CATTTTAAAATACCCTGTGT+GGG + chr8_3:61042551-61042570 Msa1299740:three_prime_UTR 30.0%
AAAGATACTGAATAGTGGTA+GGG - chr8_3:61042589-61042608 None:intergenic 30.0%
CTATCACCAATTTAGCTACA+TGG - chr8_3:61038588-61038607 None:intergenic 35.0%
TGAAATTCTGCATCCTCTAA+TGG + chr8_3:61038738-61038757 Msa1299740:exon 35.0%
AAGAAAGGGTTTGCGAAATT+TGG - chr8_3:61038815-61038834 None:intergenic 35.0%
TCTTAAACCCTTAAAGATCC+GGG + chr8_3:61038852-61038871 Msa1299740:CDS 35.0%
AGTTATTCTCACCTTCAATG+GGG - chr8_3:61038926-61038945 None:intergenic 35.0%
GCTTTACACAAACCTCAAAT+GGG - chr8_3:61039075-61039094 None:intergenic 35.0%
AGCTTTACACAAACCTCAAA+TGG - chr8_3:61039076-61039095 None:intergenic 35.0%
!! TGTGTAAAGCTTGTTGAATC+TGG + chr8_3:61039085-61039104 Msa1299740:intron 35.0%
! AAGTCTGAAGTGAGTAATGA+CGG + chr8_3:61039115-61039134 Msa1299740:intron 35.0%
! TTCCTTTTGATCCATGGATT+CGG - chr8_3:61039202-61039221 None:intergenic 35.0%
! ATCTTCTTCCTTTTGATCCA+TGG - chr8_3:61039208-61039227 None:intergenic 35.0%
ATCATAACAACAGAGAATCG+TGG + chr8_3:61039378-61039397 Msa1299740:intron 35.0%
! GATTAGGCCAACAAATTTTC+TGG + chr8_3:61039413-61039432 Msa1299740:intron 35.0%
!! CCAACAAATTTTCTGGTGTA+CGG + chr8_3:61039420-61039439 Msa1299740:intron 35.0%
ATAACAATGTTGTGTCTCCT+AGG + chr8_3:61039690-61039709 Msa1299740:intron 35.0%
TGCCATATAGAAAGAGTTAG+CGG + chr8_3:61039745-61039764 Msa1299740:intron 35.0%
AATCCCTATCTAACTCCTAA+AGG + chr8_3:61039832-61039851 Msa1299740:intron 35.0%
! ACTCCTTTAGGAGTTAGATA+GGG - chr8_3:61039838-61039857 None:intergenic 35.0%
! AACTCCTTTAGGAGTTAGAT+AGG - chr8_3:61039839-61039858 None:intergenic 35.0%
!!! TTTCTTCCATATTTTGGCTC+AGG + chr8_3:61039976-61039995 Msa1299740:intron 35.0%
ATTATGCCTGAGCCAAAATA+TGG - chr8_3:61039985-61040004 None:intergenic 35.0%
TGACGTCTTGGAAAAATTTC+TGG + chr8_3:61040287-61040306 Msa1299740:CDS 35.0%
GATTTCATCAATTCACCCAA+TGG + chr8_3:61040312-61040331 Msa1299740:CDS 35.0%
TGTACTTGTTTCATTGTTGC+TGG + chr8_3:61040950-61040969 Msa1299740:intron 35.0%
ATACTGGTGGTTCATTGAAT+CGG - chr8_3:61041056-61041075 None:intergenic 35.0%
!! ATCAGATAACGGAAGAAACA+TGG - chr8_3:61041128-61041147 None:intergenic 35.0%
ATGTTTCTTCCGTTATCTGA+TGG + chr8_3:61041127-61041146 Msa1299740:intron 35.0%
CCCAAACAAAAGACAATCAT+TGG - chr8_3:61041215-61041234 None:intergenic 35.0%
GTCTTTGTGACTAACATTGT+TGG + chr8_3:61041301-61041320 Msa1299740:intron 35.0%
!!! AATTTGGTGATTTTTGGTGG+AGG + chr8_3:61041340-61041359 Msa1299740:CDS 35.0%
!!! ATTTGGTGATTTTTGGTGGA+GGG + chr8_3:61041341-61041360 Msa1299740:CDS 35.0%
TCAATGCTACAGTGATCAAT+TGG - chr8_3:61041540-61041559 None:intergenic 35.0%
CTTGTTGACATCTAAATGCT+CGG + chr8_3:61041639-61041658 Msa1299740:intron 35.0%
TATGTCACAAACAACCTGAT+AGG + chr8_3:61041710-61041729 Msa1299740:intron 35.0%
! TATGCATTGACAAAACGACA+AGG + chr8_3:61041933-61041952 Msa1299740:CDS 35.0%
TGCACAGGCAATAATATTAG+TGG + chr8_3:61042285-61042304 Msa1299740:three_prime_UTR 35.0%
GCACAGGCAATAATATTAGT+GGG + chr8_3:61042286-61042305 Msa1299740:three_prime_UTR 35.0%
GGGTTGAAGAAAGATAGTAA+TGG + chr8_3:61042306-61042325 Msa1299740:three_prime_UTR 35.0%
! AAAGATAGTAATGGGACCAA+AGG + chr8_3:61042315-61042334 Msa1299740:three_prime_UTR 35.0%
! AAGATAGTAATGGGACCAAA+GGG + chr8_3:61042316-61042335 Msa1299740:three_prime_UTR 35.0%
GGAAACAGTTATCTTTCACT+GGG - chr8_3:61042453-61042472 None:intergenic 35.0%
TGGAAACAGTTATCTTTCAC+TGG - chr8_3:61042454-61042473 None:intergenic 35.0%
AAGATACTGAATAGTGGTAG+GGG - chr8_3:61042588-61042607 None:intergenic 35.0%
CAAAGATACTGAATAGTGGT+AGG - chr8_3:61042590-61042609 None:intergenic 35.0%
GGACAACCATGTAGCTAAAT+TGG + chr8_3:61038579-61038598 Msa1299740:five_prime_UTR 40.0%
AATCTAATCAAGTCCACGGT+CGG + chr8_3:61038643-61038662 Msa1299740:five_prime_UTR 40.0%
! AGGTTAGAACTTGAAGGTGT+AGG - chr8_3:61038787-61038806 None:intergenic 40.0%
GCGTAAAGGTTAGAACTTGA+AGG - chr8_3:61038793-61038812 None:intergenic 40.0%
GTTTGCGAAATTTGGCGTAA+AGG - chr8_3:61038807-61038826 None:intergenic 40.0%
TTTGTCACTGGAAGAGACAT+TGG - chr8_3:61038899-61038918 None:intergenic 40.0%
TGACAAATCTTCCCCATTGA+AGG + chr8_3:61038912-61038931 Msa1299740:CDS 40.0%
TTCCGAATCCATGGATCAAA+AGG + chr8_3:61039197-61039216 Msa1299740:intron 40.0%
TTGATGCTCGTGCATCAAAT+TGG + chr8_3:61039342-61039361 Msa1299740:intron 40.0%
GCATCAAATTGGTGAATGCA+CGG + chr8_3:61039353-61039372 Msa1299740:intron 40.0%
! GTGGTCCTTTGAGAATGATT+AGG + chr8_3:61039397-61039416 Msa1299740:intron 40.0%
! GTTGGCCTAATCATTCTCAA+AGG - chr8_3:61039405-61039424 None:intergenic 40.0%
CCGTACACCAGAAAATTTGT+TGG - chr8_3:61039423-61039442 None:intergenic 40.0%
AGGAAGGAAACATGCATGTT+TGG + chr8_3:61039449-61039468 Msa1299740:intron 40.0%
! TTTGCTTGAAGCAGCTTTGA+GGG - chr8_3:61039538-61039557 None:intergenic 40.0%
! TTTAGGTTTCCTAGCACTAG+AGG + chr8_3:61039631-61039650 Msa1299740:intron 40.0%
AAAACGACATCCATAGACCT+AGG - chr8_3:61039710-61039729 None:intergenic 40.0%
CATATAGAAAGAGTTAGCGG+CGG + chr8_3:61039748-61039767 Msa1299740:intron 40.0%
! TTTTCCATCAGACTAGCAAC+TGG + chr8_3:61040025-61040044 Msa1299740:intron 40.0%
AACAGTGCTCACATCAGAAA+TGG - chr8_3:61040145-61040164 None:intergenic 40.0%
GAAGACATTGCTCAACGTAA+TGG + chr8_3:61040186-61040205 Msa1299740:CDS 40.0%
ACCGCACTACTATTGTTGAT+TGG + chr8_3:61040220-61040239 Msa1299740:CDS 40.0%
GCCAATCAACAATAGTAGTG+CGG - chr8_3:61040224-61040243 None:intergenic 40.0%
! ACTACTATTGTTGATTGGCC+TGG + chr8_3:61040225-61040244 Msa1299740:CDS 40.0%
TGATTACAATGCTGACGTCT+TGG + chr8_3:61040275-61040294 Msa1299740:CDS 40.0%
!! GGTTGTTTTACTGGACCATT+GGG - chr8_3:61040330-61040349 None:intergenic 40.0%
!! TGGTTGTTTTACTGGACCAT+TGG - chr8_3:61040331-61040350 None:intergenic 40.0%
AATGGTCCAGTAAAACAACC+AGG + chr8_3:61040330-61040349 Msa1299740:CDS 40.0%
!! TCAGTACCTGGTTGTTTTAC+TGG - chr8_3:61040339-61040358 None:intergenic 40.0%
AATTGTGCTAAGGGTCTGTT+TGG + chr8_3:61040609-61040628 Msa1299740:intron 40.0%
TAAAAGACTTAGGGTCCGTT+TGG - chr8_3:61040821-61040840 None:intergenic 40.0%
AATTCCTAATGTGCTTGGCA+GGG + chr8_3:61040866-61040885 Msa1299740:intron 40.0%
! ATTGGTGGGTATTAGGAATC+TGG + chr8_3:61040920-61040939 Msa1299740:intron 40.0%
GTTTCATTGTTGCTGGTACT+TGG + chr8_3:61040957-61040976 Msa1299740:intron 40.0%
CATTGAATCGGTGAAAACAG+TGG - chr8_3:61041044-61041063 None:intergenic 40.0%
ATGACCTCTCCTGTAAATTG+TGG + chr8_3:61041165-61041184 Msa1299740:intron 40.0%
TGACCTCTCCTGTAAATTGT+GGG + chr8_3:61041166-61041185 Msa1299740:intron 40.0%
ACTTTGACCCCACAATTTAC+AGG - chr8_3:61041177-61041196 None:intergenic 40.0%
TTGTTTCCATGCTGGAATCT+CGG - chr8_3:61041474-61041493 None:intergenic 40.0%
! ATAGTACCTTGTTTCCATGC+TGG - chr8_3:61041482-61041501 None:intergenic 40.0%
CCATACCTGTCAAGTTCATA+GGG - chr8_3:61041765-61041784 None:intergenic 40.0%
ACCATACCTGTCAAGTTCAT+AGG - chr8_3:61041766-61041785 None:intergenic 40.0%
!! TCTTCTAAGAGGCACCTTAA+AGG + chr8_3:61041785-61041804 Msa1299740:CDS 40.0%
! CATGTGATTTGTACTGCGAT+TGG - chr8_3:61041866-61041885 None:intergenic 40.0%
TGCATATCTGCTTTCGACAA+TGG - chr8_3:61041919-61041938 None:intergenic 40.0%
CCAAATCTGCAAAGAGTTGA+AGG - chr8_3:61042025-61042044 None:intergenic 40.0%
CCTTCAACTCTTTGCAGATT+TGG + chr8_3:61042022-61042041 Msa1299740:CDS 40.0%
TCAACTCTTTGCAGATTTGG+AGG + chr8_3:61042025-61042044 Msa1299740:CDS 40.0%
CAACTCTTTGCAGATTTGGA+GGG + chr8_3:61042026-61042045 Msa1299740:CDS 40.0%
CAACTAAAGGGTCTCCTAAA+AGG + chr8_3:61042072-61042091 Msa1299740:CDS 40.0%
TAAAGGAGTGAGCAAGTTTG+TGG + chr8_3:61042127-61042146 Msa1299740:CDS 40.0%
! GTGTCAACTTTTAAGCGACA+GGG - chr8_3:61042238-61042257 None:intergenic 40.0%
! TGTGTCAACTTTTAAGCGAC+AGG - chr8_3:61042239-61042258 None:intergenic 40.0%
GTCGCTTAAAAGTTGACACA+TGG + chr8_3:61042239-61042258 Msa1299740:exon 40.0%
CACATGGTACTTGTGTATGT+TGG + chr8_3:61042255-61042274 Msa1299740:three_prime_UTR 40.0%
TTGCCAAAATCATTTCCCAC+TGG + chr8_3:61042401-61042420 Msa1299740:three_prime_UTR 40.0%
! AGTCCAGTGGGAAATGATTT+TGG - chr8_3:61042407-61042426 None:intergenic 40.0%
AAGTCAAACATCAGTCCAGT+GGG - chr8_3:61042419-61042438 None:intergenic 40.0%
AACATGTCGCCTCTAATTTG+TGG - chr8_3:61042474-61042493 None:intergenic 40.0%
AATGCAGAAAATACCGACCG+TGG - chr8_3:61038659-61038678 None:intergenic 45.0%
! TCGGTATTTTCTGCATTCCG+TGG + chr8_3:61038662-61038681 Msa1299740:five_prime_UTR 45.0%
GTTGAAGCCCGGATCTTTAA+GGG - chr8_3:61038862-61038881 None:intergenic 45.0%
AGTTGAAGCCCGGATCTTTA+AGG - chr8_3:61038863-61038882 None:intergenic 45.0%
AATCAAGGGTAGTTGAAGCC+CGG - chr8_3:61038873-61038892 None:intergenic 45.0%
CAATGGGGAAGATTTGTCAC+TGG - chr8_3:61038911-61038930 None:intergenic 45.0%
CAAAGTTGGATGCCCATTTG+AGG + chr8_3:61039060-61039079 Msa1299740:intron 45.0%
TGTGTTGTGTTCCGAATCCA+TGG + chr8_3:61039188-61039207 Msa1299740:intron 45.0%
! TAGAGAGCATGTTGATGCTC+AGG + chr8_3:61039245-61039264 Msa1299740:intron 45.0%
TTGATGCACGAGCATCAACA+TGG - chr8_3:61039340-61039359 None:intergenic 45.0%
! TTTCTGGTGTACGGATGAGT+AGG + chr8_3:61039429-61039448 Msa1299740:intron 45.0%
TGCATGTTTGGACTTGACTG+AGG + chr8_3:61039461-61039480 Msa1299740:intron 45.0%
CTTTGCTTGAAGCAGCTTTG+AGG - chr8_3:61039539-61039558 None:intergenic 45.0%
CAAAGCTGCTTCAAGCAAAG+TGG + chr8_3:61039539-61039558 Msa1299740:intron 45.0%
GATTCACAACCTCTAGTGCT+AGG - chr8_3:61039643-61039662 None:intergenic 45.0%
TGTTGTGTCTCCTAGGTCTA+TGG + chr8_3:61039697-61039716 Msa1299740:intron 45.0%
CGCCGCTAACTCTTTCTATA+TGG - chr8_3:61039750-61039769 None:intergenic 45.0%
GAGTTACTCGCAACTCCTTT+AGG - chr8_3:61039850-61039869 None:intergenic 45.0%
GGAACATGTGAAGGAGAGTT+CGG + chr8_3:61040089-61040108 Msa1299740:CDS 45.0%
GTGCTCACATCAGAAATGGT+TGG - chr8_3:61040141-61040160 None:intergenic 45.0%
! TTCTGATGTGAGCACTGTTG+AGG + chr8_3:61040146-61040165 Msa1299740:CDS 45.0%
!! ATTGTTGATTGGCCTGGTCT+AGG + chr8_3:61040231-61040250 Msa1299740:CDS 45.0%
CGATCAGAATAACCTAGACC+AGG - chr8_3:61040246-61040265 None:intergenic 45.0%
!! CAACCAGGTACTGATAGTAG+TGG + chr8_3:61040345-61040364 Msa1299740:intron 45.0%
CAATTCCTAATGTGCTTGGC+AGG + chr8_3:61040865-61040884 Msa1299740:intron 45.0%
AAAACCCTGCCAAGCACATT+AGG - chr8_3:61040873-61040892 None:intergenic 45.0%
! AATGTGCTTGGCAGGGTTTT+AGG + chr8_3:61040873-61040892 Msa1299740:intron 45.0%
! ATGTGCTTGGCAGGGTTTTA+GGG + chr8_3:61040874-61040893 Msa1299740:intron 45.0%
! AACAGTGGTTCACGGATTAC+TGG - chr8_3:61041029-61041048 None:intergenic 45.0%
TCGGTGAAAACAGTGGTTCA+CGG - chr8_3:61041037-61041056 None:intergenic 45.0%
GACCTCTCCTGTAAATTGTG+GGG + chr8_3:61041167-61041186 Msa1299740:intron 45.0%
GCAACAGCAGCTATAGCTTT+GGG - chr8_3:61041415-61041434 None:intergenic 45.0%
TGCAACAGCAGCTATAGCTT+TGG - chr8_3:61041416-61041435 None:intergenic 45.0%
TCGGCCAAATACGATAGGAA+GGG - chr8_3:61041455-61041474 None:intergenic 45.0%
GAATCTCGGCCAAATACGAT+AGG - chr8_3:61041460-61041479 None:intergenic 45.0%
GAGATTCCAGCATGGAAACA+AGG + chr8_3:61041473-61041492 Msa1299740:CDS 45.0%
GCTACAGTGATCAATTGGCA+AGG - chr8_3:61041535-61041554 None:intergenic 45.0%
CCTGTCAAGTTCATAGGGAA+GGG - chr8_3:61041760-61041779 None:intergenic 45.0%
ACCTGTCAAGTTCATAGGGA+AGG - chr8_3:61041761-61041780 None:intergenic 45.0%
CCCTATGAACTTGACAGGTA+TGG + chr8_3:61041762-61041781 Msa1299740:intron 45.0%
GACAGGTATGGTCTTCTAAG+AGG + chr8_3:61041774-61041793 Msa1299740:intron 45.0%
!! TGGTGTCACGTTATCAGGAT+TGG - chr8_3:61041895-61041914 None:intergenic 45.0%
TATCTGCTTTCGACAATGGC+TGG - chr8_3:61041915-61041934 None:intergenic 45.0%
AGAGTTGAAGGAACTCCTCA+CGG - chr8_3:61042013-61042032 None:intergenic 45.0%
! ATCTCAGCCTTGGACCTTTT+AGG - chr8_3:61042089-61042108 None:intergenic 45.0%
TAAAAGGTCCAAGGCTGAGA+TGG + chr8_3:61042088-61042107 Msa1299740:CDS 45.0%
GCTGAGATGGAAGCTCTTAA+CGG + chr8_3:61042101-61042120 Msa1299740:CDS 45.0%
GAAGCTCTTAACGGAGCTAA+AGG + chr8_3:61042110-61042129 Msa1299740:CDS 45.0%
AAAGCAGGATACTCCTCTTG+TGG - chr8_3:61042173-61042192 None:intergenic 45.0%
! TATGTTGGTGAAGCTTGCAC+AGG + chr8_3:61042270-61042289 Msa1299740:three_prime_UTR 45.0%
CAAGTCAAACATCAGTCCAG+TGG - chr8_3:61042420-61042439 None:intergenic 45.0%
!! TAAATATAAGATTATTTAAT+TGG - chr8_3:61039879-61039898 None:intergenic 5.0%
!! TTTAATAAATATTTATTATG+AGG + chr8_3:61040068-61040087 Msa1299740:CDS 5.0%
!! AAAATATATATTTACTAAAT+TGG + chr8_3:61040571-61040590 Msa1299740:intron 5.0%
!! GTTGCAGAGAGTGCCATTAG+AGG - chr8_3:61038754-61038773 None:intergenic 50.0%
TGGTGTACGGATGAGTAGGA+AGG + chr8_3:61039433-61039452 Msa1299740:intron 50.0%
ACTGAGGTTTCCCCACTTGT+GGG + chr8_3:61039477-61039496 Msa1299740:intron 50.0%
GTCTCTCAATCCCACAAGTG+GGG - chr8_3:61039490-61039509 None:intergenic 50.0%
CGTCTCTCAATCCCACAAGT+GGG - chr8_3:61039491-61039510 None:intergenic 50.0%
ACTTGTGGGATTGAGAGACG+CGG + chr8_3:61039491-61039510 Msa1299740:intron 50.0%
AGAGACGCGGCTTTCACTTT+GGG + chr8_3:61039504-61039523 Msa1299740:intron 50.0%
! ACTGCCAGTTGCTAGTCTGA+TGG - chr8_3:61040032-61040051 None:intergenic 50.0%
ATCAGACTAGCAACTGGCAG+TGG + chr8_3:61040031-61040050 Msa1299740:intron 50.0%
! ATGTGAGCACTGTTGAGGAG+TGG + chr8_3:61040151-61040170 Msa1299740:CDS 50.0%
CCTCCACTACTATCAGTACC+TGG - chr8_3:61040351-61040370 None:intergenic 50.0%
!! CCAGGTACTGATAGTAGTGG+AGG + chr8_3:61040348-61040367 Msa1299740:intron 50.0%
GACTTAGGGTCCGTTTGGAT+TGG - chr8_3:61040816-61040835 None:intergenic 50.0%
!!! TGGCAGGGTTTTAGGGCTTT+TGG + chr8_3:61040881-61040900 Msa1299740:intron 50.0%
GACCCCACAATTTACAGGAG+AGG - chr8_3:61041172-61041191 None:intergenic 50.0%
AGTAGTCCGTGCTGCGAAAA+AGG + chr8_3:61041378-61041397 Msa1299740:CDS 50.0%
GTAGTCCGTGCTGCGAAAAA+GGG + chr8_3:61041379-61041398 Msa1299740:CDS 50.0%
GGTCCCCTTCCTATCGTATT+TGG + chr8_3:61041448-61041467 Msa1299740:CDS 50.0%
CGGCCAAATACGATAGGAAG+GGG - chr8_3:61041454-61041473 None:intergenic 50.0%
CTCGGCCAAATACGATAGGA+AGG - chr8_3:61041456-61041475 None:intergenic 50.0%
ATTTGGCCGAGATTCCAGCA+TGG + chr8_3:61041465-61041484 Msa1299740:CDS 50.0%
CCCTTCCCTATGAACTTGAC+AGG + chr8_3:61041757-61041776 Msa1299740:intron 50.0%
!! ATGGCTGGTGTCACGTTATC+AGG - chr8_3:61041900-61041919 None:intergenic 50.0%
ACTCCTCACGGGATGTTACA+GGG - chr8_3:61042001-61042020 None:intergenic 50.0%
AACTCCTCACGGGATGTTAC+AGG - chr8_3:61042002-61042021 None:intergenic 50.0%
GAGTTGAAGGAACTCCTCAC+GGG - chr8_3:61042012-61042031 None:intergenic 50.0%
AGGGTCTCCTAAAAGGTCCA+AGG + chr8_3:61042079-61042098 Msa1299740:CDS 50.0%
AAGAGCTTCCATCTCAGCCT+TGG - chr8_3:61042099-61042118 None:intergenic 50.0%
!! AGCAAGTTTGTGGAAGTGCC+TGG + chr8_3:61042137-61042156 Msa1299740:CDS 50.0%
!! TCTTGTGGAAGAAGAGCACC+AGG - chr8_3:61042158-61042177 None:intergenic 50.0%
TGGTGCTCTTCTTCCACAAG+AGG + chr8_3:61042157-61042176 Msa1299740:CDS 50.0%
! GGAGTATCCTGCTTTAGTCG+CGG + chr8_3:61042178-61042197 Msa1299740:CDS 50.0%
GACTGAGGTTTCCCCACTTG+TGG + chr8_3:61039476-61039495 Msa1299740:intron 55.0%
GCGTCTCTCAATCCCACAAG+TGG - chr8_3:61039492-61039511 None:intergenic 55.0%
GAGAGACGCGGCTTTCACTT+TGG + chr8_3:61039503-61039522 Msa1299740:intron 55.0%
!! CCAGACCCTTTTTCGCAGCA+CGG - chr8_3:61041387-61041406 None:intergenic 55.0%
TAGCTGCTGTTGCACCCACT+TGG + chr8_3:61041422-61041441 Msa1299740:CDS 55.0%
!! ACCTTAAAGGCGCCTGCAGT+TGG + chr8_3:61041798-61041817 Msa1299740:CDS 55.0%
!! CCTTAAAGGCGCCTGCAGTT+GGG + chr8_3:61041799-61041818 Msa1299740:CDS 55.0%
TACACCATCCACCCAACTGC+AGG - chr8_3:61041813-61041832 None:intergenic 55.0%
! AGGAGCACGTTACTTACCCG+CGG + chr8_3:61041953-61041972 Msa1299740:CDS 55.0%
TTACCCGCGGCTTTCTTGAC+TGG + chr8_3:61041966-61041985 Msa1299740:CDS 55.0%
AGTCCAGTCAAGAAAGCCGC+GGG - chr8_3:61041972-61041991 None:intergenic 55.0%
GAGTCCAGTCAAGAAAGCCG+CGG - chr8_3:61041973-61041992 None:intergenic 55.0%
CACGGGATGTTACAGGGTCT+AGG - chr8_3:61041995-61042014 None:intergenic 55.0%
AGACCCTGTAACATCCCGTG+AGG + chr8_3:61041995-61042014 Msa1299740:CDS 55.0%
AGCTCTTCCGCGACTAAAGC+AGG - chr8_3:61042188-61042207 None:intergenic 55.0%
ACCCTGTGTGGGTATCCTGA+TGG + chr8_3:61042562-61042581 Msa1299740:three_prime_UTR 55.0%
GCCATCAGGATACCCACACA+GGG - chr8_3:61042566-61042585 None:intergenic 55.0%
GAATAGTGGTAGGGGCCATC+AGG - chr8_3:61042580-61042599 None:intergenic 55.0%
CCGTGCTGCGAAAAAGGGTC+TGG + chr8_3:61041384-61041403 Msa1299740:CDS 60.0%
GCTGTTGCACCCACTTGGTC+TGG + chr8_3:61041427-61041446 Msa1299740:CDS 60.0%
GGAAGGGGACCAGACCAAGT+GGG - chr8_3:61041439-61041458 None:intergenic 60.0%
AGGAAGGGGACCAGACCAAG+TGG - chr8_3:61041440-61041459 None:intergenic 60.0%
CCCAACTGCAGGCGCCTTTA+AGG - chr8_3:61041802-61041821 None:intergenic 60.0%
!! TAAAGGCGCCTGCAGTTGGG+TGG + chr8_3:61041802-61041821 Msa1299740:CDS 60.0%
GGCCATCAGGATACCCACAC+AGG - chr8_3:61042567-61042586 None:intergenic 60.0%
GGCGCCTGCAGTTGGGTGGA+TGG + chr8_3:61041806-61041825 Msa1299740:CDS 70.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 61038545 61042609 61038545 ID=Msa1299740;Name=Msa1299740
chr8_3 mRNA 61038545 61042609 61038545 ID=Msa1299740-mRNA-1;Parent=Msa1299740;Name=Msa1299740-mRNA-1;_AED=0.01;_eAED=0.01;_QI=212|1|1|1|1|1|4|362|373
chr8_3 exon 61038545 61038933 61038545 ID=Msa1299740-mRNA-1:exon:17941;Parent=Msa1299740-mRNA-1
chr8_3 exon 61040036 61040351 61040036 ID=Msa1299740-mRNA-1:exon:17942;Parent=Msa1299740-mRNA-1
chr8_3 exon 61041335 61041494 61041335 ID=Msa1299740-mRNA-1:exon:17943;Parent=Msa1299740-mRNA-1
chr8_3 exon 61041779 61042609 61041779 ID=Msa1299740-mRNA-1:exon:17944;Parent=Msa1299740-mRNA-1
chr8_3 five_prime_UTR 61038545 61038756 61038545 ID=Msa1299740-mRNA-1:five_prime_utr;Parent=Msa1299740-mRNA-1
chr8_3 CDS 61038757 61038933 61038757 ID=Msa1299740-mRNA-1:cds;Parent=Msa1299740-mRNA-1
chr8_3 CDS 61040036 61040351 61040036 ID=Msa1299740-mRNA-1:cds;Parent=Msa1299740-mRNA-1
chr8_3 CDS 61041335 61041494 61041335 ID=Msa1299740-mRNA-1:cds;Parent=Msa1299740-mRNA-1
chr8_3 CDS 61041779 61042247 61041779 ID=Msa1299740-mRNA-1:cds;Parent=Msa1299740-mRNA-1
chr8_3 three_prime_UTR 61042248 61042609 61042248 ID=Msa1299740-mRNA-1:three_prime_utr;Parent=Msa1299740-mRNA-1
Gene Sequence

>Msa1299740

ATGGCACTCTCTGCAACATTTATCACTCCTACACCTTCAAGTTCTAACCTTTACGCCAAATTTCGCAAACCCTTTCTTTCTCACTCTGTTTATCTTCTTAAACCCTTAAAGATCCGGGCTTCAACTACCCTTGATTATTCCAATGTCTCTTCCAGTGACAAATCTTCCCCATTGAAGACTAGCAACTGGCAGTGGAAATTCAAGAACAATTTAATAAATATTTATTATGAGGAACATGTGAAGGAGAGTTCGGAGCCTTCCCAAAATATCTTGATGATGCCAACCATTTCTGATGTGAGCACTGTTGAGGAGTGGAGATTAGTTGCTGAAGACATTGCTCAACGTAATGGCAGTGTCAATTACCGCACTACTATTGTTGATTGGCCTGGTCTAGGTTATTCTGATCGACCAAAGATTGATTACAATGCTGACGTCTTGGAAAAATTTCTGGTTGATTTCATCAATTCACCCAATGGTCCAGTAAAACAACCAGACAACAATTTGGTGATTTTTGGTGGAGGGCATGCTGCTTCAATAGTAGTCCGTGCTGCGAAAAAGGGTCTGGTGAAGCCCAAAGCTATAGCTGCTGTTGCACCCACTTGGTCTGGTCCCCTTCCTATCGTATTTGGCCGAGATTCCAGCATGGAAACAAGGTATGGTCTTCTAAGAGGCACCTTAAAGGCGCCTGCAGTTGGGTGGATGGTGTATAACATGCTTGTGAGCAATGAGAATGCAATCCAATCGCAGTACAAATCACATGTATATGCCAATCCTGATAACGTGACACCAGCCATTGTCGAAAGCAGATATGCATTGACAAAACGACAAGGAGCACGTTACTTACCCGCGGCTTTCTTGACTGGACTCCTAGACCCTGTAACATCCCGTGAGGAGTTCCTTCAACTCTTTGCAGATTTGGAGGGAAAAATACCAGTATTTGTTGTATCAACTAAAGGGTCTCCTAAAAGGTCCAAGGCTGAGATGGAAGCTCTTAACGGAGCTAAAGGAGTGAGCAAGTTTGTGGAAGTGCCTGGTGCTCTTCTTCCACAAGAGGAGTATCCTGCTTTAGTCGCGGAAGAGCTTTATCAATTCTTGCAACAGAATTTTGGCCCTGTCGCTTAA
Protein sequence

>Msa1299740

MALSATFITPTPSSSNLYAKFRKPFLSHSVYLLKPLKIRASTTLDYSNVSSSDKSSPLKTSNWQWKFKNNLINIYYEEHVKESSEPSQNILMMPTISDVSTVEEWRLVAEDIAQRNGSVNYRTTIVDWPGLGYSDRPKIDYNADVLEKFLVDFINSPNGPVKQPDNNLVIFGGGHAASIVVRAAKKGLVKPKAIAAVAPTWSGPLPIVFGRDSSMETRYGLLRGTLKAPAVGWMVYNMLVSNENAIQSQYKSHVYANPDNVTPAIVESRYALTKRQGARYLPAAFLTGLLDPVTSREEFLQLFADLEGKIPVFVVSTKGSPKRSKAEMEALNGAKGVSKFVEVPGALLPQEEYPALVAEELYQFLQQNFGPVA*