Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0627410 | Msa1307980 | 0.803928 | 2.757866e-49 | -8.615850e-47 |
| Msa0726140 | Msa1307980 | 0.811977 | 5.344490e-51 | -8.615850e-47 |
| Msa0766630 | Msa1307980 | 0.834520 | 2.857945e-56 | -8.615850e-47 |
| Msa0777790 | Msa1307980 | 0.811197 | 7.896085e-51 | -8.615850e-47 |
| Msa0153910 | Msa1307980 | 0.821982 | 3.021975e-53 | -8.615850e-47 |
| Msa1297210 | Msa1307980 | 0.803690 | 3.090775e-49 | -8.615850e-47 |
| Msa1307980 | Msa1397610 | 0.802666 | 5.034099e-49 | -8.615850e-47 |
| Msa0456200 | Msa1307980 | 0.807872 | 4.088933e-50 | -8.615850e-47 |
| Msa0326200 | Msa1307980 | 0.806132 | 9.544352e-50 | -8.615850e-47 |
| Msa1136090 | Msa1307980 | 0.820849 | 5.517851e-53 | -8.615850e-47 |
| Msa1187940 | Msa1307980 | 0.802975 | 4.347439e-49 | -8.615850e-47 |
| Msa0885280 | Msa1307980 | 0.813710 | 2.230627e-51 | -8.615850e-47 |
| Msa0885290 | Msa1307980 | 0.828057 | 1.110828e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 49 sgRNAs with CRISPR-Local
Find 239 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGGTGATTGTGGTGGTGTT+AGG | 0.232677 | 8_4:-4077390 | Msa1307980:CDS |
| GGGGAATGTTGTAGAAGATT+TGG | 0.296919 | 8_4:-4080273 | Msa1307980:CDS |
| GGGAGTGAGGGACGCGGCGG+CGG | 0.312445 | 8_4:-4077554 | Msa1307980:CDS |
| ATGTTCAAAGGAGAAGATTT+TGG | 0.312817 | 8_4:+4080580 | None:intergenic |
| GGGAATGTTGTAGAAGATTT+GGG | 0.326589 | 8_4:-4080272 | Msa1307980:intron |
| TGAATGTCTGTTAGATTTGA+AGG | 0.355483 | 8_4:-4077590 | Msa1307980:intron |
| GGACGCGGCGGCGGGAGGTC+GGG | 0.357737 | 8_4:-4077545 | Msa1307980:CDS |
| GGAGTGAGGGACGCGGCGGC+GGG | 0.396475 | 8_4:-4077553 | Msa1307980:CDS |
| GACGGAGAAGGCTTGAGAAT+GGG | 0.405730 | 8_4:-4077324 | Msa1307980:CDS |
| GTGAGGGACGCGGCGGCGGG+AGG | 0.406618 | 8_4:-4077550 | Msa1307980:CDS |
| GGGACGCGGCGGCGGGAGGT+CGG | 0.418671 | 8_4:-4077546 | Msa1307980:CDS |
| TGGTGATTGTGGTGGTGTTA+GGG | 0.427114 | 8_4:-4077389 | Msa1307980:CDS |
| GCGTCCCTCACTCCCTCCGC+CGG | 0.431283 | 8_4:+4077562 | None:intergenic |
| CTGGGAGAAGAATAGTGAAA+TGG | 0.450876 | 8_4:+4080629 | None:intergenic |
| GGACGGAGAAGGCTTGAGAA+TGG | 0.465287 | 8_4:-4077325 | Msa1307980:CDS |
| AAAACAGAAGAAAACGAAGC+TGG | 0.484661 | 8_4:+4080610 | None:intergenic |
| GTGGTGTTAGGGTCGGAGAC+GGG | 0.487929 | 8_4:-4077378 | Msa1307980:CDS |
| GGTGGTGTTAGGGTCGGAGA+CGG | 0.488468 | 8_4:-4077379 | Msa1307980:CDS |
| AGATCCCGGCGGAGGGAGTG+AGG | 0.508898 | 8_4:-4077567 | Msa1307980:CDS |
| GGAGGGAGTGAGGGACGCGG+CGG | 0.510274 | 8_4:-4077557 | Msa1307980:CDS |
| GAAGAATAGTGAAATGGAAG+AGG | 0.511873 | 8_4:+4080635 | None:intergenic |
| GTTAGATTTGAAGGAGATCC+CGG | 0.512201 | 8_4:-4077581 | Msa1307980:intron |
| AAGAGAAGAGGTGGTGATTG+TGG | 0.519542 | 8_4:-4077400 | Msa1307980:CDS |
| GTCGGAGACGGGTGTGAGAG+TGG | 0.520076 | 8_4:-4077367 | Msa1307980:CDS |
| CGTCCCTCACTCCCTCCGCC+GGG | 0.525281 | 8_4:+4077563 | None:intergenic |
| ACGGAGAAGGCTTGAGAATG+GGG | 0.536049 | 8_4:-4077323 | Msa1307980:CDS |
| AAGAAGAAGAGGAGGCGGTG+AGG | 0.536810 | 8_4:-4077447 | Msa1307980:CDS |
| GATCCCGGCGGAGGGAGTGA+GGG | 0.541458 | 8_4:-4077566 | Msa1307980:CDS |
| GATTGTGGTGGTGTTAGGGT+CGG | 0.541721 | 8_4:-4077385 | Msa1307980:CDS |
| TCGGAGACGGGTGTGAGAGT+GGG | 0.545633 | 8_4:-4077366 | Msa1307980:CDS |
| CGCGAGCAAGAGGACGGAGA+AGG | 0.545756 | 8_4:-4077336 | Msa1307980:CDS |
| CGGCGGTTGTGAAGAAGAAG+AGG | 0.547520 | 8_4:-4077458 | Msa1307980:CDS |
| AAACAGAAGAAAACGAAGCT+GGG | 0.552484 | 8_4:+4080611 | None:intergenic |
| TTTGAAGGAGATCCCGGCGG+AGG | 0.560324 | 8_4:-4077575 | Msa1307980:CDS |
| GGGTCGGAGGCGCGAGCAAG+AGG | 0.561201 | 8_4:-4077346 | Msa1307980:CDS |
| CGGAGGCGCGAGCAAGAGGA+CGG | 0.565421 | 8_4:-4077342 | Msa1307980:CDS |
| TTGAAGGAGATCCCGGCGGA+GGG | 0.570749 | 8_4:-4077574 | Msa1307980:CDS |
| GGCGGAGGGAGTGAGGGACG+CGG | 0.577606 | 8_4:-4077560 | Msa1307980:CDS |
| TGGAAGAGGAACATGTTCAA+AGG | 0.577839 | 8_4:+4080568 | None:intergenic |
| CGGAGAAGGCTTGAGAATGG+GGG | 0.583799 | 8_4:-4077322 | Msa1307980:CDS |
| TTGTGAAGAAGAAGAGGAGG+CGG | 0.587466 | 8_4:-4077452 | Msa1307980:CDS |
| AGACGGGTGTGAGAGTGGGT+CGG | 0.597199 | 8_4:-4077362 | Msa1307980:CDS |
| CGGGTGTGAGAGTGGGTCGG+AGG | 0.614662 | 8_4:-4077359 | Msa1307980:CDS |
| AACGACGATATTGACGAGGA+CGG | 0.655479 | 8_4:-4077478 | Msa1307980:CDS |
| CGGTTGTGAAGAAGAAGAGG+AGG | 0.673596 | 8_4:-4077455 | Msa1307980:CDS |
| AGAAGAGGTGGTGATTGTGG+TGG | 0.680229 | 8_4:-4077397 | Msa1307980:CDS |
| GACGATATTGACGAGGACGG+CGG | 0.727647 | 8_4:-4077475 | Msa1307980:CDS |
| AGACAACGACGATATTGACG+AGG | 0.729620 | 8_4:-4077482 | Msa1307980:CDS |
| AGATTTGAAGGAGATCCCGG+CGG | 0.764797 | 8_4:-4077578 | Msa1307980:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATAAATTTCACAAATTT+GGG | + | chr8_4:4077573-4077592 | None:intergenic | 10.0% |
| !! | TAATATAAATTTCACAAATT+TGG | + | chr8_4:4077574-4077593 | None:intergenic | 10.0% |
| !! | AATTTGTGAAATTTATATTA+TGG | - | chr8_4:4077574-4077593 | Msa1307980:CDS | 10.0% |
| !! | TAAATAAATTAAACAACTTT+GGG | + | chr8_4:4077908-4077927 | None:intergenic | 10.0% |
| !! | ATAAATAAATTAAACAACTT+TGG | + | chr8_4:4077909-4077928 | None:intergenic | 10.0% |
| !! | AATAACAAAAATAAAAATCA+AGG | + | chr8_4:4077945-4077964 | None:intergenic | 10.0% |
| !!! | TTGATTTTTATTTTTGTTAT+TGG | - | chr8_4:4077944-4077963 | Msa1307980:intron | 10.0% |
| !! | TATAATTTATGAAAAAATAG+TGG | + | chr8_4:4080037-4080056 | None:intergenic | 10.0% |
| !! | CAAAAGAAAATATAAAAGAA+TGG | + | chr8_4:4077398-4077417 | None:intergenic | 15.0% |
| !!! | CATTCTTTTATATTTTCTTT+TGG | - | chr8_4:4077396-4077415 | Msa1307980:CDS | 15.0% |
| !! | ATATAAATTTCACAAATTTG+GGG | + | chr8_4:4077572-4077591 | None:intergenic | 15.0% |
| !!! | TTTATATTATGGTTTTAGTT+AGG | - | chr8_4:4077585-4077604 | Msa1307980:intron | 15.0% |
| !! | AAAAATCAAGGAAATATAAT+GGG | + | chr8_4:4077933-4077952 | None:intergenic | 15.0% |
| !! | TAAAAATCAAGGAAATATAA+TGG | + | chr8_4:4077934-4077953 | None:intergenic | 15.0% |
| !! | CTAATTTATGAAAAAAATAG+TGG | + | chr8_4:4079188-4079207 | None:intergenic | 15.0% |
| !!! | TAAATAACATGTTTTACAAT+CGG | + | chr8_4:4079242-4079261 | None:intergenic | 15.0% |
| !!! | ATTGTAAAACATGTTATTTA+TGG | - | chr8_4:4079242-4079261 | Msa1307980:intron | 15.0% |
| !! | TCTAATTTATGAAAAAATAG+TGG | + | chr8_4:4079401-4079420 | None:intergenic | 15.0% |
| !! | TCTAATTTATGAAAAAATAG+TGG | + | chr8_4:4079401-4079420 | None:intergenic | 15.0% |
| !! | TCTAATTTATGAAAAAATAG+TGG | + | chr8_4:4079401-4079420 | None:intergenic | 15.0% |
| !! | AAAATATAAAAGAATGGAAG+AGG | + | chr8_4:4077392-4077411 | None:intergenic | 20.0% |
| !! | TTCAAGATTTCAAATTCAAA+AGG | - | chr8_4:4077534-4077553 | Msa1307980:CDS | 20.0% |
| !! | TATAAATTTCACAAATTTGG+GGG | + | chr8_4:4077571-4077590 | None:intergenic | 20.0% |
| !!! | TAAACTTTAAGGGAAAATTA+GGG | + | chr8_4:4077781-4077800 | None:intergenic | 20.0% |
| !!! | ATAAACTTTAAGGGAAAATT+AGG | + | chr8_4:4077782-4077801 | None:intergenic | 20.0% |
| !!! | ATTTCTTTGTTACTTAGATA+TGG | - | chr8_4:4077848-4077867 | Msa1307980:intron | 20.0% |
| !!! | TTTCTTTGTTACTTAGATAT+GGG | - | chr8_4:4077849-4077868 | Msa1307980:intron | 20.0% |
| !! | TTCATCAATAGTTATTTGTT+TGG | - | chr8_4:4078411-4078430 | Msa1307980:intron | 20.0% |
| !!! | CTTGTTTTTTAATTAAGTGT+AGG | - | chr8_4:4078459-4078478 | Msa1307980:intron | 20.0% |
| !! | AAAAAACTTTCATTGTGTAA+GGG | + | chr8_4:4078756-4078775 | None:intergenic | 20.0% |
| !! | AAAAAAACTTTCATTGTGTA+AGG | + | chr8_4:4078757-4078776 | None:intergenic | 20.0% |
| !!! | TAAAACATGTTATTTATGGT+TGG | - | chr8_4:4079246-4079265 | Msa1307980:intron | 20.0% |
| !!! | GATGTAAATAATATCGTTTT+AGG | + | chr8_4:4079318-4079337 | None:intergenic | 20.0% |
| !! | AAAACGATATTATTTACATC+TGG | - | chr8_4:4079318-4079337 | Msa1307980:intron | 20.0% |
| !! | AAACGATATTATTTACATCT+GGG | - | chr8_4:4079319-4079338 | Msa1307980:intron | 20.0% |
| !!! | TAAATAACCTGTTTTACAAT+CGG | + | chr8_4:4079454-4079473 | None:intergenic | 20.0% |
| !! | ATTGTAAAACAGGTTATTTA+TGG | - | chr8_4:4079454-4079473 | Msa1307980:intron | 20.0% |
| !!! | GATGTAAATAATATCGTTTT+AGG | + | chr8_4:4079318-4079337 | None:intergenic | 20.0% |
| !! | AAAACGATATTATTTACATC+TGG | - | chr8_4:4079318-4079337 | Msa1307980:intron | 20.0% |
| !! | AAACGATATTATTTACATCT+GGG | - | chr8_4:4079319-4079338 | Msa1307980:intron | 20.0% |
| !!! | TAAATAACCTGTTTTACAAT+CGG | + | chr8_4:4079454-4079473 | None:intergenic | 20.0% |
| !! | ATTGTAAAACAGGTTATTTA+TGG | - | chr8_4:4079454-4079473 | Msa1307980:intron | 20.0% |
| !!! | GATGTAAATAATATCGTTTT+AGG | + | chr8_4:4079318-4079337 | None:intergenic | 20.0% |
| !! | AAAACGATATTATTTACATC+TGG | - | chr8_4:4079318-4079337 | Msa1307980:intron | 20.0% |
| !! | AAACGATATTATTTACATCT+GGG | - | chr8_4:4079319-4079338 | Msa1307980:intron | 20.0% |
| !!! | TAAATAACCTGTTTTACAAT+CGG | + | chr8_4:4079454-4079473 | None:intergenic | 20.0% |
| !! | ATTGTAAAACAGGTTATTTA+TGG | - | chr8_4:4079454-4079473 | Msa1307980:intron | 20.0% |
| !!! | ATATAACCATAATTTGTCAA+AGG | - | chr8_4:4080135-4080154 | Msa1307980:intron | 20.0% |
| ! | GAATCAAAATCAAGAGAAAA+AGG | + | chr8_4:4077517-4077536 | None:intergenic | 25.0% |
| ! | ACTGAAAAATTATCGATCAA+TGG | + | chr8_4:4077642-4077661 | None:intergenic | 25.0% |
| !! | TTTTTATTGAATCAGCTTCA+TGG | - | chr8_4:4077742-4077761 | Msa1307980:intron | 25.0% |
| !! | TTTTATTGAATCAGCTTCAT+GGG | - | chr8_4:4077743-4077762 | Msa1307980:intron | 25.0% |
| !! | AAACTTTAAGGGAAAATTAG+GGG | + | chr8_4:4077780-4077799 | None:intergenic | 25.0% |
| !! | TGTCTATGAGAATTTGAAAT+GGG | - | chr8_4:4077879-4077898 | Msa1307980:intron | 25.0% |
| ! | AATTTCCCTTGTGTAATATT+TGG | - | chr8_4:4077976-4077995 | Msa1307980:intron | 25.0% |
| ! | AATCTCCAAATATTACACAA+GGG | + | chr8_4:4077984-4078003 | None:intergenic | 25.0% |
| ! | TGTAATATTTGGAGATTGTA+AGG | - | chr8_4:4077987-4078006 | Msa1307980:intron | 25.0% |
| !!! | AATTTTCAATTGCTACTTCT+AGG | + | chr8_4:4078184-4078203 | None:intergenic | 25.0% |
| ! | AGAAGTAGCAATTGAAAATT+TGG | - | chr8_4:4078184-4078203 | Msa1307980:intron | 25.0% |
| !!! | TTATCGATTCAATCAAGATA+AGG | + | chr8_4:4078251-4078270 | None:intergenic | 25.0% |
| !! | TCTTATTTGTCATATCATGA+AGG | + | chr8_4:4078285-4078304 | None:intergenic | 25.0% |
| ! | TTGAAACAAGTACTTAAAAG+TGG | + | chr8_4:4078321-4078340 | None:intergenic | 25.0% |
| ! | CTTGATTATTATATATGCCT+TGG | + | chr8_4:4078349-4078368 | None:intergenic | 25.0% |
| ! | CAAGGCATATATAATAATCA+AGG | - | chr8_4:4078347-4078366 | Msa1307980:intron | 25.0% |
| ! | GCATATGAAATTACTTATGT+AGG | - | chr8_4:4078384-4078403 | Msa1307980:intron | 25.0% |
| ! | AAAAACTTTCATTGTGTAAG+GGG | + | chr8_4:4078755-4078774 | None:intergenic | 25.0% |
| ! | TACAATATAATACCAAGCAA+AGG | - | chr8_4:4078830-4078849 | Msa1307980:intron | 25.0% |
| ! | GAAGAATAAAAATAGTGTAG+TGG | - | chr8_4:4079001-4079020 | Msa1307980:intron | 25.0% |
| ! | AGAAAAACTAGCCAAATATA+TGG | - | chr8_4:4079344-4079363 | Msa1307980:intron | 25.0% |
| ! | TAAAACAGGTTATTTATGGT+TGG | - | chr8_4:4079458-4079477 | Msa1307980:intron | 25.0% |
| ! | AGAAAAACTAGCCAAATATA+TGG | - | chr8_4:4079344-4079363 | Msa1307980:intron | 25.0% |
| ! | TAAAACAGGTTATTTATGGT+TGG | - | chr8_4:4079458-4079477 | Msa1307980:intron | 25.0% |
| ! | AGAAAAACTAGCCAAATATA+TGG | - | chr8_4:4079344-4079363 | Msa1307980:intron | 25.0% |
| ! | TAAAACAGGTTATTTATGGT+TGG | - | chr8_4:4079458-4079477 | Msa1307980:intron | 25.0% |
| !! | GGTGTAAATAATATCGTTTT+AGG | + | chr8_4:4079954-4079973 | None:intergenic | 25.0% |
| ! | AAAACGATATTATTTACACC+TGG | - | chr8_4:4079954-4079973 | Msa1307980:intron | 25.0% |
| ! | AAACGATATTATTTACACCT+GGG | - | chr8_4:4079955-4079974 | Msa1307980:intron | 25.0% |
| ! | AGAAAAACTAGCCAAATATA+TGG | - | chr8_4:4079344-4079363 | Msa1307980:intron | 25.0% |
| ! | GGTTATATTGTTCGTTTATT+TGG | + | chr8_4:4080123-4080142 | None:intergenic | 25.0% |
| ! | ATGTTCAAAGGAGAAGATTT+TGG | + | chr8_4:4077366-4077385 | None:intergenic | 30.0% |
| ! | GCAAAAGAACATTTCTAAGA+AGG | - | chr8_4:4077484-4077503 | Msa1307980:CDS | 30.0% |
| !! | ATAATTTTTCAGTGACATCG+AGG | - | chr8_4:4077649-4077668 | Msa1307980:intron | 30.0% |
| !! | TAATTTTTCAGTGACATCGA+GGG | - | chr8_4:4077650-4077669 | Msa1307980:intron | 30.0% |
| CTGTCTATGAGAATTTGAAA+TGG | - | chr8_4:4077878-4077897 | Msa1307980:intron | 30.0% | |
| CAATCTCCAAATATTACACA+AGG | + | chr8_4:4077985-4078004 | None:intergenic | 30.0% | |
| ATATTTGGAGATTGTAAGGA+TGG | - | chr8_4:4077991-4078010 | Msa1307980:intron | 30.0% | |
| ATGATGTTTCACTATGCTTA+AGG | + | chr8_4:4078040-4078059 | None:intergenic | 30.0% | |
| TTAAGCATAGTGAAACATCA+TGG | - | chr8_4:4078039-4078058 | Msa1307980:intron | 30.0% | |
| ATAATCAAGGCTAAGATGTT+AGG | - | chr8_4:4078360-4078379 | Msa1307980:intron | 30.0% | |
| GAGTATGCTTCAAATTAACT+TGG | - | chr8_4:4078436-4078455 | Msa1307980:intron | 30.0% | |
| CTATAGTTGTTGTATAGATG+TGG | - | chr8_4:4078571-4078590 | Msa1307980:intron | 30.0% | |
| TATAATACCAAGCAAAGGTT+CGG | - | chr8_4:4078835-4078854 | Msa1307980:intron | 30.0% | |
| ! | ATTTGATGATCTTCATCATG+TGG | + | chr8_4:4078865-4078884 | None:intergenic | 30.0% |
| GTCACGTATTTGTAAAAATG+TGG | + | chr8_4:4079166-4079185 | None:intergenic | 30.0% | |
| GTCACGTATTTGTAAAAATG+TGG | + | chr8_4:4079166-4079185 | None:intergenic | 30.0% | |
| GTCACGTATTTGTAAAAATG+TGG | + | chr8_4:4079166-4079185 | None:intergenic | 30.0% | |
| GTCACGTATTTGTAAAAATG+TGG | + | chr8_4:4079166-4079185 | None:intergenic | 30.0% | |
| GTCACGTATATGTAAAAATG+TGG | + | chr8_4:4080015-4080034 | None:intergenic | 30.0% | |
| TATAATGTCTCAGTGACAAT+TGG | - | chr8_4:4080053-4080072 | Msa1307980:intron | 30.0% | |
| ! | TTTTGAATGCAGGGAAAATA+TGG | + | chr8_4:4080166-4080185 | None:intergenic | 30.0% |
| ! | CTCTTTGAATTTTGAATGCA+GGG | + | chr8_4:4080175-4080194 | None:intergenic | 30.0% |
| TGAATTTGAGTAGATTTGAG+AGG | + | chr8_4:4080247-4080266 | None:intergenic | 30.0% | |
| TGAATGTCTGTTAGATTTGA+AGG | - | chr8_4:4080353-4080372 | Msa1307980:intron | 30.0% | |
| CTGTTCAGATCTAAAAACTA+CGG | + | chr8_4:4080433-4080452 | None:intergenic | 30.0% | |
| GAAGAATAGTGAAATGGAAG+AGG | + | chr8_4:4077311-4077330 | None:intergenic | 35.0% | |
| AAACAGAAGAAAACGAAGCT+GGG | + | chr8_4:4077335-4077354 | None:intergenic | 35.0% | |
| AAAACAGAAGAAAACGAAGC+TGG | + | chr8_4:4077336-4077355 | None:intergenic | 35.0% | |
| !! | AAAGGAGAAGATTTTGGTGA+CGG | + | chr8_4:4077360-4077379 | None:intergenic | 35.0% |
| !! | AATTTTTCAGTGACATCGAG+GGG | - | chr8_4:4077651-4077670 | Msa1307980:intron | 35.0% |
| GGGAATGTTGTAGAAGATTT+GGG | - | chr8_4:4077671-4077690 | Msa1307980:intron | 35.0% | |
| TACTTGTTTCAATGTGTCCA+AGG | - | chr8_4:4078329-4078348 | Msa1307980:intron | 35.0% | |
| ! | TGGTGTTTTGTGATTCTGAT+AGG | - | chr8_4:4078591-4078610 | Msa1307980:intron | 35.0% |
| TAAAGAAGCGGATGACAAAA+GGG | + | chr8_4:4078649-4078668 | None:intergenic | 35.0% | |
| ATAAAGAAGCGGATGACAAA+AGG | + | chr8_4:4078650-4078669 | None:intergenic | 35.0% | |
| TGCACTCGTAAATAAAGAAG+CGG | + | chr8_4:4078661-4078680 | None:intergenic | 35.0% | |
| AGTTAAGTGAAGAACCAAGA+TGG | + | chr8_4:4078724-4078743 | None:intergenic | 35.0% | |
| AGAATACCAAATGTGAAGCT+TGG | - | chr8_4:4078801-4078820 | Msa1307980:intron | 35.0% | |
| GAATACCAAATGTGAAGCTT+GGG | - | chr8_4:4078802-4078821 | Msa1307980:intron | 35.0% | |
| ATAATACCAAGCAAAGGTTC+GGG | - | chr8_4:4078836-4078855 | Msa1307980:intron | 35.0% | |
| ! | GTCTTTTATTCGAGTGAACA+CGG | + | chr8_4:4078919-4078938 | None:intergenic | 35.0% |
| !! | TCGCACTATGTATGGTTTTA+TGG | - | chr8_4:4079090-4079109 | Msa1307980:intron | 35.0% |
| ATTAGAACTTGTCCGTCTTT+AGG | - | chr8_4:4079203-4079222 | Msa1307980:intron | 35.0% | |
| AAGTTTATCACGCCTAAAGA+CGG | + | chr8_4:4079218-4079237 | None:intergenic | 35.0% | |
| GGTCATACAGACCATATATT+TGG | + | chr8_4:4079358-4079377 | None:intergenic | 35.0% | |
| ! | AAACTTGCCGATTGTAAAAC+AGG | - | chr8_4:4079232-4079251 | Msa1307980:intron | 35.0% |
| GGTCATACAGACCATATATT+TGG | + | chr8_4:4079358-4079377 | None:intergenic | 35.0% | |
| ! | AAACTTGCCGATTGTAAAAC+AGG | - | chr8_4:4079232-4079251 | Msa1307980:intron | 35.0% |
| GGTCATACAGACCATATATT+TGG | + | chr8_4:4079358-4079377 | None:intergenic | 35.0% | |
| ! | AAACTTGCCGATTGTAAAAC+AGG | - | chr8_4:4079232-4079251 | Msa1307980:intron | 35.0% |
| GGTCATACAGACCATATATT+TGG | + | chr8_4:4079358-4079377 | None:intergenic | 35.0% | |
| GTTACGCCTTTGACAAATTA+TGG | + | chr8_4:4080144-4080163 | None:intergenic | 35.0% | |
| ! | CCTCTTTGAATTTTGAATGC+AGG | + | chr8_4:4080176-4080195 | None:intergenic | 35.0% |
| CCTGCATTCAAAATTCAAAG+AGG | - | chr8_4:4080173-4080192 | Msa1307980:intron | 35.0% | |
| AAAATTCAAAGAGGATGCGA+CGG | - | chr8_4:4080182-4080201 | Msa1307980:intron | 35.0% | |
| ATTTGAGTAGATTTGAGAGG+AGG | + | chr8_4:4080244-4080263 | None:intergenic | 35.0% | |
| !!! | CAAATCGTTTTGAAGAGAAG+AGG | - | chr8_4:4080531-4080550 | Msa1307980:intron | 35.0% |
| CTGGGAGAAGAATAGTGAAA+TGG | + | chr8_4:4077317-4077336 | None:intergenic | 40.0% | |
| !! | AAGGAGAAGATTTTGGTGAC+GGG | + | chr8_4:4077359-4077378 | None:intergenic | 40.0% |
| TGGAAGAGGAACATGTTCAA+AGG | + | chr8_4:4077378-4077397 | None:intergenic | 40.0% | |
| GGGGAATGTTGTAGAAGATT+TGG | - | chr8_4:4077670-4077689 | Msa1307980:intron | 40.0% | |
| TGATCAGATGATCTCTGTTG+TGG | - | chr8_4:4078500-4078519 | Msa1307980:intron | 40.0% | |
| TGATCTCTGTTGTGGCATAA+AGG | - | chr8_4:4078508-4078527 | Msa1307980:intron | 40.0% | |
| TGGCATAAAGGAGTTGTGTT+AGG | - | chr8_4:4078520-4078539 | Msa1307980:intron | 40.0% | |
| TAAAGGAGTTGTGTTAGGAG+TGG | - | chr8_4:4078525-4078544 | Msa1307980:intron | 40.0% | |
| AAAGGAGTTGTGTTAGGAGT+GGG | - | chr8_4:4078526-4078545 | Msa1307980:intron | 40.0% | |
| GTGTTGTATGTGGTTTGATG+TGG | - | chr8_4:4078548-4078567 | Msa1307980:intron | 40.0% | |
| GAATTCCCAAGCTTCACATT+TGG | + | chr8_4:4078810-4078829 | None:intergenic | 40.0% | |
| TCAAGAAATCGTGTCAAGAG+CGG | - | chr8_4:4078942-4078961 | Msa1307980:intron | 40.0% | |
| CCATACATAGTGCGATTAGA+AGG | + | chr8_4:4079085-4079104 | None:intergenic | 40.0% | |
| CCTTCTAATCGCACTATGTA+TGG | - | chr8_4:4079082-4079101 | Msa1307980:intron | 40.0% | |
| ATTAGAACTTGTCCGTCCTT+AGG | - | chr8_4:4079415-4079434 | Msa1307980:intron | 40.0% | |
| AAGTTTATCACGCCTAAGGA+CGG | + | chr8_4:4079430-4079449 | None:intergenic | 40.0% | |
| ATTAGAACTTGTCCGTCCTT+AGG | - | chr8_4:4079415-4079434 | Msa1307980:intron | 40.0% | |
| AAGTTTATCACGCCTAAGGA+CGG | + | chr8_4:4079430-4079449 | None:intergenic | 40.0% | |
| ATTAGAACTTGTCCGTCCTT+AGG | - | chr8_4:4079415-4079434 | Msa1307980:intron | 40.0% | |
| AAGTTTATCACGCCTAAGGA+CGG | + | chr8_4:4079430-4079449 | None:intergenic | 40.0% | |
| !!! | TTGGCTAGTTTTTCTTTCCC+AGG | + | chr8_4:4079339-4079358 | None:intergenic | 40.0% |
| GTTAGATTTGAAGGAGATCC+CGG | - | chr8_4:4080362-4080381 | Msa1307980:intron | 40.0% | |
| !!! | ATCGTTTTGAAGAGAAGAGG+TGG | - | chr8_4:4080534-4080553 | Msa1307980:intron | 40.0% |
| ACTTTCGCAGGGTTAACTAG+AGG | - | chr8_4:4077449-4077468 | Msa1307980:CDS | 45.0% | |
| GCAGGGTTAACTAGAGGAAA+GGG | - | chr8_4:4077455-4077474 | Msa1307980:CDS | 45.0% | |
| ! | TTAGGAGTGGGTGTTGTATG+TGG | - | chr8_4:4078538-4078557 | Msa1307980:intron | 45.0% |
| !! | AGATGGAAAGCACTGCACAT+TGG | + | chr8_4:4078707-4078726 | None:intergenic | 45.0% |
| ATGTGCAGTGCTTTCCATCT+TGG | - | chr8_4:4078707-4078726 | Msa1307980:intron | 45.0% | |
| CAAGAAATCGTGTCAAGAGC+GGG | - | chr8_4:4078943-4078962 | Msa1307980:intron | 45.0% | |
| AAGAAATCGTGTCAAGAGCG+GGG | - | chr8_4:4078944-4078963 | Msa1307980:intron | 45.0% | |
| GTAGATTTGAGAGGAGGATG+AGG | + | chr8_4:4080238-4080257 | None:intergenic | 45.0% | |
| TGTTACTCTCTCATCGACGT+CGG | - | chr8_4:4080287-4080306 | Msa1307980:intron | 45.0% | |
| TCACCGTTTCTGCTTAGATC+CGG | + | chr8_4:4080315-4080334 | None:intergenic | 45.0% | |
| AGACAACGACGATATTGACG+AGG | - | chr8_4:4080461-4080480 | Msa1307980:intron | 45.0% | |
| AACGACGATATTGACGAGGA+CGG | - | chr8_4:4080465-4080484 | Msa1307980:intron | 45.0% | |
| TTGTGAAGAAGAAGAGGAGG+CGG | - | chr8_4:4080491-4080510 | Msa1307980:intron | 45.0% | |
| AAGAGAAGAGGTGGTGATTG+TGG | - | chr8_4:4080543-4080562 | Msa1307980:intron | 45.0% | |
| ! | TGGTGATTGTGGTGGTGTTA+GGG | - | chr8_4:4080554-4080573 | Msa1307980:intron | 45.0% |
| !! | AATAAAAATATAAACTTTAA+GGG | + | chr8_4:4077791-4077810 | None:intergenic | 5.0% |
| !! | AAATAAAAATATAAACTTTA+AGG | + | chr8_4:4077792-4077811 | None:intergenic | 5.0% |
| CATGGGTCGCAGTCACTAAA+AGG | + | chr8_4:4077423-4077442 | None:intergenic | 50.0% | |
| ! | CTTTTAGTGACTGCGACCCA+TGG | - | chr8_4:4077421-4077440 | Msa1307980:CDS | 50.0% |
| CCTGCGAAAGTGAAGACCAT+GGG | + | chr8_4:4077440-4077459 | None:intergenic | 50.0% | |
| CCATGGTCTTCACTTTCGCA+GGG | - | chr8_4:4077438-4077457 | Msa1307980:CDS | 50.0% | |
| CGCAGGGTTAACTAGAGGAA+AGG | - | chr8_4:4077454-4077473 | Msa1307980:CDS | 50.0% | |
| TGGATACCCGAACCTTTGCT+TGG | + | chr8_4:4078845-4078864 | None:intergenic | 50.0% | |
| ! | GAGTGAACACGGTTGATGCT+TGG | + | chr8_4:4078908-4078927 | None:intergenic | 50.0% |
| CTCGTATCACTCTTCACCCA+TGG | + | chr8_4:4078981-4079000 | None:intergenic | 50.0% | |
| CATGGGTGAAGAGTGATACG+AGG | - | chr8_4:4078979-4078998 | Msa1307980:intron | 50.0% | |
| CGGCAAGTTTATCACGCCTA+AGG | + | chr8_4:4079222-4079241 | None:intergenic | 50.0% | |
| CGGCAAGTTTATCACGCCTA+AGG | + | chr8_4:4079222-4079241 | None:intergenic | 50.0% | |
| CGGCAAGTTTATCACGCCTA+AGG | + | chr8_4:4079222-4079241 | None:intergenic | 50.0% | |
| ATTCAAAGAGGATGCGACGG+AGG | - | chr8_4:4080185-4080204 | Msa1307980:intron | 50.0% | |
| TTGAGAGGAGGATGAGGAAG+AGG | + | chr8_4:4080232-4080251 | None:intergenic | 50.0% | |
| CGTCGATGAGAGAGTAACAG+TGG | + | chr8_4:4080286-4080305 | None:intergenic | 50.0% | |
| GAGCCGGATCTAAGCAGAAA+CGG | - | chr8_4:4080309-4080328 | Msa1307980:intron | 50.0% | |
| AGATTTGAAGGAGATCCCGG+CGG | - | chr8_4:4080365-4080384 | Msa1307980:intron | 50.0% | |
| CGGTTGTGAAGAAGAAGAGG+AGG | - | chr8_4:4080488-4080507 | Msa1307980:intron | 50.0% | |
| AGAAGAGGTGGTGATTGTGG+TGG | - | chr8_4:4080546-4080565 | Msa1307980:intron | 50.0% | |
| ! | GTGGTGATTGTGGTGGTGTT+AGG | - | chr8_4:4080553-4080572 | Msa1307980:intron | 50.0% |
| ! | GATTGTGGTGGTGTTAGGGT+CGG | - | chr8_4:4080558-4080577 | Msa1307980:intron | 50.0% |
| GACGGAGAAGGCTTGAGAAT+GGG | - | chr8_4:4080619-4080638 | Msa1307980:CDS | 50.0% | |
| ACGGAGAAGGCTTGAGAATG+GGG | - | chr8_4:4080620-4080639 | Msa1307980:CDS | 50.0% | |
| CCCATGGTCTTCACTTTCGC+AGG | - | chr8_4:4077437-4077456 | Msa1307980:CDS | 55.0% | |
| CCCTGCGAAAGTGAAGACCA+TGG | + | chr8_4:4077441-4077460 | None:intergenic | 55.0% | |
| CGGGGTTCTTGGAACACCAT+GGG | - | chr8_4:4078962-4078981 | Msa1307980:intron | 55.0% | |
| AAAGAGGATGCGACGGAGGT+GGG | - | chr8_4:4080189-4080208 | Msa1307980:intron | 55.0% | |
| GACGATATTGACGAGGACGG+CGG | - | chr8_4:4080468-4080487 | Msa1307980:intron | 55.0% | |
| CGGCGGTTGTGAAGAAGAAG+AGG | - | chr8_4:4080485-4080504 | Msa1307980:intron | 55.0% | |
| AAGAAGAAGAGGAGGCGGTG+AGG | - | chr8_4:4080496-4080515 | Msa1307980:intron | 55.0% | |
| GGACGGAGAAGGCTTGAGAA+TGG | - | chr8_4:4080618-4080637 | Msa1307980:CDS | 55.0% | |
| CGGAGAAGGCTTGAGAATGG+GGG | - | chr8_4:4080621-4080640 | Msa1307980:CDS | 55.0% | |
| AGAAGGCTTGAGAATGGGGG+CGG | - | chr8_4:4080624-4080643 | Msa1307980:CDS | 55.0% | |
| CGTGTCAAGAGCGGGGTTCT+TGG | - | chr8_4:4078951-4078970 | Msa1307980:intron | 60.0% | |
| GCGGGGTTCTTGGAACACCA+TGG | - | chr8_4:4078961-4078980 | Msa1307980:intron | 60.0% | |
| CAAAGAGGATGCGACGGAGG+TGG | - | chr8_4:4080188-4080207 | Msa1307980:intron | 60.0% | |
| AAGAGGATGCGACGGAGGTG+GGG | - | chr8_4:4080190-4080209 | Msa1307980:intron | 60.0% | |
| TCTCTCATCGACGTCGGAGC+CGG | - | chr8_4:4080293-4080312 | Msa1307980:intron | 60.0% | |
| TTTGAAGGAGATCCCGGCGG+AGG | - | chr8_4:4080368-4080387 | Msa1307980:intron | 60.0% | |
| TTGAAGGAGATCCCGGCGGA+GGG | - | chr8_4:4080369-4080388 | Msa1307980:intron | 60.0% | |
| ! | GGTGGTGTTAGGGTCGGAGA+CGG | - | chr8_4:4080564-4080583 | Msa1307980:intron | 60.0% |
| ! | GTGGTGTTAGGGTCGGAGAC+GGG | - | chr8_4:4080565-4080584 | Msa1307980:intron | 60.0% |
| TCGGAGACGGGTGTGAGAGT+GGG | - | chr8_4:4080577-4080596 | Msa1307980:intron | 60.0% | |
| AGACGGGTGTGAGAGTGGGT+CGG | - | chr8_4:4080581-4080600 | Msa1307980:CDS | 60.0% | |
| AGAGGATGCGACGGAGGTGG+GGG | - | chr8_4:4080191-4080210 | Msa1307980:intron | 65.0% | |
| GTCGGAGACGGGTGTGAGAG+TGG | - | chr8_4:4080576-4080595 | Msa1307980:intron | 65.0% | |
| CGCGAGCAAGAGGACGGAGA+AGG | - | chr8_4:4080607-4080626 | Msa1307980:CDS | 65.0% | |
| AGGCTTGAGAATGGGGGCGG+CGG | - | chr8_4:4080627-4080646 | Msa1307980:CDS | 65.0% | |
| AGATCCCGGCGGAGGGAGTG+AGG | - | chr8_4:4080376-4080395 | Msa1307980:intron | 70.0% | |
| GATCCCGGCGGAGGGAGTGA+GGG | - | chr8_4:4080377-4080396 | Msa1307980:intron | 70.0% | |
| CGGGTGTGAGAGTGGGTCGG+AGG | - | chr8_4:4080584-4080603 | Msa1307980:CDS | 70.0% | |
| ! | CGGAGGCGCGAGCAAGAGGA+CGG | - | chr8_4:4080601-4080620 | Msa1307980:CDS | 70.0% |
| CGTCCCTCACTCCCTCCGCC+GGG | + | chr8_4:4080383-4080402 | None:intergenic | 75.0% | |
| GCGTCCCTCACTCCCTCCGC+CGG | + | chr8_4:4080384-4080403 | None:intergenic | 75.0% | |
| GGCGGAGGGAGTGAGGGACG+CGG | - | chr8_4:4080383-4080402 | Msa1307980:intron | 75.0% | |
| GGAGGGAGTGAGGGACGCGG+CGG | - | chr8_4:4080386-4080405 | Msa1307980:intron | 75.0% | |
| ! | GGGTCGGAGGCGCGAGCAAG+AGG | - | chr8_4:4080597-4080616 | Msa1307980:CDS | 75.0% |
| ! | GGGAGTGAGGGACGCGGCGG+CGG | - | chr8_4:4080389-4080408 | Msa1307980:intron | 80.0% |
| ! | GGAGTGAGGGACGCGGCGGC+GGG | - | chr8_4:4080390-4080409 | Msa1307980:intron | 80.0% |
| ! | GAGAATGGGGGCGGCGGCGC+TGG | - | chr8_4:4080633-4080652 | Msa1307980:CDS | 80.0% |
| ! | GTGAGGGACGCGGCGGCGGG+AGG | - | chr8_4:4080393-4080412 | Msa1307980:intron | 85.0% |
| ! | GGGACGCGGCGGCGGGAGGT+CGG | - | chr8_4:4080397-4080416 | Msa1307980:intron | 85.0% |
| ! | GGACGCGGCGGCGGGAGGTC+GGG | - | chr8_4:4080398-4080417 | Msa1307980:intron | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 4077303 | 4080662 | 4077303 | ID=Msa1307980;Name=Msa1307980 |
| chr8_4 | mRNA | 4077303 | 4080662 | 4077303 | ID=Msa1307980-mRNA-1;Parent=Msa1307980;Name=Msa1307980-mRNA-1;_AED=0.82;_eAED=0.95;_QI=0|0|0.33|0.66|0|0.33|3|0|136 |
| chr8_4 | exon | 4080580 | 4080662 | 4080580 | ID=Msa1307980-mRNA-1:exon:1186;Parent=Msa1307980-mRNA-1 |
| chr8_4 | exon | 4080273 | 4080304 | 4080273 | ID=Msa1307980-mRNA-1:exon:1185;Parent=Msa1307980-mRNA-1 |
| chr8_4 | exon | 4077303 | 4077598 | 4077303 | ID=Msa1307980-mRNA-1:exon:1184;Parent=Msa1307980-mRNA-1 |
| chr8_4 | CDS | 4080580 | 4080662 | 4080580 | ID=Msa1307980-mRNA-1:cds;Parent=Msa1307980-mRNA-1 |
| chr8_4 | CDS | 4080273 | 4080304 | 4080273 | ID=Msa1307980-mRNA-1:cds;Parent=Msa1307980-mRNA-1 |
| chr8_4 | CDS | 4077303 | 4077598 | 4077303 | ID=Msa1307980-mRNA-1:cds;Parent=Msa1307980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
