AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1356600


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1356600 MtrunA17_Chr3g0121581 98.069 466 9 0 1 466 1 466 0.0 946
Msa1356600 MtrunA17_Chr5g0400751 25.258 388 257 9 77 453 56 421 9.91e-25 106
Msa1356600 MtrunA17_Chr7g0271361 24.603 252 161 9 74 307 48 288 1.87e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1356600 AT1G08490.1 77.468 466 102 1 1 466 1 463 0.0 732
Msa1356600 AT5G65720.3 24.444 450 283 11 20 453 12 420 1.32e-21 97.4
Msa1356600 AT5G65720.1 24.444 450 283 11 20 453 12 420 1.32e-21 97.4
Msa1356600 AT5G65720.2 23.920 301 188 8 169 453 17 292 3.76e-13 70.9

Find 153 sgRNAs with CRISPR-Local

Find 377 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTGATCTTGCAACATTTC+TGG 0.138943 tig0015809:+55930 Msa1356600:CDS
TGGCTATTTATTTATTATTA+TGG 0.153869 tig0015809:-51166 None:intergenic
GGCCCATAGATGCGAATATT+TGG 0.178379 tig0015809:-55844 None:intergenic
CAACCCCTCCATCGGTATTT+AGG 0.187810 tig0015809:+56407 Msa1356600:CDS
AACTCTTAGTTCTCCCTCTT+TGG 0.194746 tig0015809:+51863 Msa1356600:CDS
TCCTTCAATTTGTCTATATC+TGG 0.214976 tig0015809:-52748 None:intergenic
AATGATTTCAGATGTATATT+TGG 0.234059 tig0015809:+53844 Msa1356600:CDS
TGGATTCTTATATGGTAAAA+TGG 0.237622 tig0015809:+53611 Msa1356600:CDS
GTCCCAAATATTCGCATCTA+TGG 0.258743 tig0015809:+55841 Msa1356600:CDS
GACATGTTATTCCACAATTA+AGG 0.283706 tig0015809:-56673 None:intergenic
ACAGGCATTGGATTCTTATA+TGG 0.290323 tig0015809:+53603 Msa1356600:CDS
TCAATCTAGTAGCTTATTCT+TGG 0.296895 tig0015809:+52252 Msa1356600:CDS
AATTTATACTCGCAATAGTA+TGG 0.307512 tig0015809:+56782 Msa1356600:three_prime_UTR
ACTCTTAGTTCTCCCTCTTT+GGG 0.324312 tig0015809:+51864 Msa1356600:CDS
TTACTTCCTGGTGAAGTATA+GGG 0.324627 tig0015809:-51908 None:intergenic
AACCCCTCCATCGGTATTTA+GGG 0.335796 tig0015809:+56408 Msa1356600:CDS
AGTGATTGAACAGCAATAAC+TGG 0.340667 tig0015809:-51748 None:intergenic
TTAGGATTGGTTCAATTGAT+AGG 0.340879 tig0015809:+56586 Msa1356600:three_prime_UTR
GCAGCAATTGATTACTTGTC+TGG 0.346961 tig0015809:+54430 Msa1356600:CDS
ATACTTCACCAGGAAGTAAA+TGG 0.354665 tig0015809:+51912 Msa1356600:CDS
TCCATCGCCATTGGTTGGGT+TGG 0.374008 tig0015809:+51239 Msa1356600:five_prime_UTR
TTTACTTCCTGGTGAAGTAT+AGG 0.375419 tig0015809:-51909 None:intergenic
ATTGGTGAAGCAATTGGATT+AGG 0.377119 tig0015809:+54406 Msa1356600:CDS
ATTGATTACTTGTCTGGGAT+TGG 0.379311 tig0015809:+54436 Msa1356600:CDS
CCATCGCCATTGGTTGGGTT+GGG 0.379491 tig0015809:+51240 Msa1356600:five_prime_UTR
ATGAGATCAGCAAGAGGAAT+TGG 0.385117 tig0015809:-56623 None:intergenic
CCAGCTATTGGTGAAGCAAT+TGG 0.385593 tig0015809:+54400 Msa1356600:CDS
CCTGGTGAAGTATAGGGAAA+TGG 0.386768 tig0015809:-51902 None:intergenic
TAACTGGGGCTTGGAAGTTT+CGG 0.386871 tig0015809:-51732 None:intergenic
TCTGACACGTGATGTGGTTC+TGG 0.390059 tig0015809:-51772 None:intergenic
CAGTGTGCAATATCTCTAAT+AGG 0.390967 tig0015809:-53375 None:intergenic
GCAAGTATGCAACTGTTAAC+TGG 0.400568 tig0015809:-51270 None:intergenic
GCCCATAGATGCGAATATTT+GGG 0.403525 tig0015809:-55843 None:intergenic
CTGGTGAAGTATAGGGAAAT+GGG 0.406014 tig0015809:-51901 None:intergenic
CTATATCTGGAATTTCATCT+TGG 0.406188 tig0015809:-52735 None:intergenic
ATAGGAGAATTCCAAAATCT+TGG 0.408694 tig0015809:-51681 None:intergenic
TTACAATTCAAACGTGCATC+GGG 0.418015 tig0015809:+52019 Msa1356600:CDS
CAATCTAGTAGCTTATTCTT+GGG 0.419995 tig0015809:+52253 Msa1356600:CDS
GGTTTCCATCGCCATTGGTT+GGG 0.422201 tig0015809:+51235 Msa1356600:five_prime_UTR
GAGGCTGGAACACCAGCTAT+TGG 0.422236 tig0015809:+54388 Msa1356600:CDS
TTGATTACTTGTCTGGGATT+GGG 0.425333 tig0015809:+54437 Msa1356600:CDS
TTGACGGTTGATGCACGAAC+AGG 0.429519 tig0015809:-51822 None:intergenic
TTGACTTCTTTCGAAGGGGC+TGG 0.434464 tig0015809:-55865 None:intergenic
CACAAACCTGGACGGAGGTT+CGG 0.435387 tig0015809:-53882 None:intergenic
TGCAACATTTCTGGACCAAC+AGG 0.438009 tig0015809:+55939 Msa1356600:CDS
AATGCCTTCACAACAGCTGC+AGG 0.442651 tig0015809:-51978 None:intergenic
CTCGTTTGACTTCTTTCGAA+GGG 0.444579 tig0015809:-55870 None:intergenic
TTACAGATGTGTGGGCCTAC+AGG 0.456863 tig0015809:+53585 Msa1356600:intron
TTCAGCTACTGCTTGATTGA+CGG 0.459909 tig0015809:-51838 None:intergenic
CCTTAGTGTTGTAGAAATAG+AGG 0.461757 tig0015809:-56454 None:intergenic
AAGTATAGGGAAATGGGGTC+TGG 0.471495 tig0015809:-51895 None:intergenic
CAAATGGTTTCCATCGCCAT+TGG 0.471565 tig0015809:+51230 Msa1356600:five_prime_UTR
TAAATACCGATGGAGGGGTT+GGG 0.473325 tig0015809:-56405 None:intergenic
CATGGAGTGGCAATCAGATC+AGG 0.475274 tig0015809:+56371 Msa1356600:CDS
TTAAGGCCTACTGTAATTAG+TGG 0.475990 tig0015809:-56656 None:intergenic
TCCAGATATAGACAAATTGA+AGG 0.478567 tig0015809:+52747 Msa1356600:CDS
CTTCAATTCATTCAAGTAGT+CGG 0.482994 tig0015809:+56523 Msa1356600:exon
GACTGTACATCAGTTAGGAT+TGG 0.484410 tig0015809:+56573 Msa1356600:three_prime_UTR
AAAATGGAGGCATGGAAGAC+AGG 0.487304 tig0015809:-53638 None:intergenic
GTGGAGAACAGCGGCGGCGA+GGG 0.491164 tig0015809:-51367 None:intergenic
TCCATTGCTAACCACCCAAT+AGG 0.493901 tig0015809:-51699 None:intergenic
GAACAGCAATAACTGGGGCT+TGG 0.497888 tig0015809:-51741 None:intergenic
ATTTATGTGTTACAAAATGC+CGG 0.499401 tig0015809:+56708 Msa1356600:three_prime_UTR
TGGTTTCCATCGCCATTGGT+TGG 0.499995 tig0015809:+51234 Msa1356600:five_prime_UTR
TCCTATTGGGTGGTTAGCAA+TGG 0.500044 tig0015809:+51698 Msa1356600:exon
CTCTTGCTGATCTCATAGAT+AGG 0.500389 tig0015809:+56630 Msa1356600:three_prime_UTR
ACTCACCTCATACTCATGTA+TGG 0.501136 tig0015809:-54467 None:intergenic
AGAAATGTTGCAAGATCAGT+AGG 0.504435 tig0015809:-55928 None:intergenic
CAGCAATTGATTACTTGTCT+GGG 0.508847 tig0015809:+54431 Msa1356600:CDS
TACCATACTAGATTTGAGGC+TGG 0.512947 tig0015809:+54373 Msa1356600:intron
GCAAGCCATACATGAGTATG+AGG 0.513803 tig0015809:+54462 Msa1356600:CDS
CTGACAGAAGCCTTTCATAC+AGG 0.515663 tig0015809:-55819 None:intergenic
ATGTGTGGGCCTACAGGCAT+TGG 0.516246 tig0015809:+53591 Msa1356600:CDS
CATCATGTTTCAAATGTGCT+TGG 0.517203 tig0015809:+52805 Msa1356600:CDS
CTAAATACCGATGGAGGGGT+TGG 0.521306 tig0015809:-56406 None:intergenic
CCATTTCCCTATACTTCACC+AGG 0.523096 tig0015809:+51902 Msa1356600:CDS
GATATTGCACACTGGGCACA+TGG 0.530497 tig0015809:+53384 Msa1356600:CDS
TCCCAAATATTCGCATCTAT+GGG 0.531604 tig0015809:+55842 Msa1356600:CDS
CCAATTGCTTCACCAATAGC+TGG 0.533136 tig0015809:-54400 None:intergenic
ACCACATCACGTGTCAGACT+TGG 0.534095 tig0015809:+51777 Msa1356600:CDS
GTGATTGAACAGCAATAACT+GGG 0.535039 tig0015809:-51747 None:intergenic
CACGTGTCGGATCAAGCAAA+TGG 0.535997 tig0015809:+51214 Msa1356600:five_prime_UTR
GCACACTGGGCACATGGGGT+TGG 0.536529 tig0015809:+53390 Msa1356600:CDS
TTATGATGATCAGAGCTTAG+TGG 0.536844 tig0015809:-51386 None:intergenic
GAACAGGGAGATAAGTTAAA+CGG 0.538325 tig0015809:-51806 None:intergenic
TGAACATCAACCACCATGTG+TGG 0.542670 tig0015809:-53447 None:intergenic
GTTACAATTCAAACGTGCAT+CGG 0.544500 tig0015809:+52018 Msa1356600:CDS
CTTATGCCGAACCTCCGTCC+AGG 0.545005 tig0015809:+53876 Msa1356600:CDS
ATCATAATTCAATTCATACT+AGG 0.547474 tig0015809:+51402 Msa1356600:five_prime_UTR
GGAAATGGGGTCTGGTAGTG+TGG 0.550619 tig0015809:-51887 None:intergenic
TGGGTACATACCTGTATGAA+AGG 0.550622 tig0015809:+55809 Msa1356600:CDS
GCATTGCAAGACTATTATGA+AGG 0.553126 tig0015809:+51996 Msa1356600:CDS
TATTAGAGATATTGCACACT+GGG 0.555135 tig0015809:+53377 Msa1356600:CDS
CCTCTATTTCTACAACACTA+AGG 0.555763 tig0015809:+56454 Msa1356600:CDS
TCTTGTTGCTTCTTCTCACA+AGG 0.556164 tig0015809:+53488 Msa1356600:CDS
AATCTAGTAGCTTATTCTTG+GGG 0.557727 tig0015809:+52254 Msa1356600:CDS
CAACAAGAAAATCAGCATCA+AGG 0.558160 tig0015809:-53473 None:intergenic
CCCAACCCAACCAATGGCGA+TGG 0.558816 tig0015809:-51240 None:intergenic
AGAAGTTGACCGTGTCATGA+AGG 0.561968 tig0015809:-56502 None:intergenic
CATTTGCTTGATCCGACACG+TGG 0.567329 tig0015809:-51213 None:intergenic
GAAGTTGACCGTGTCATGAA+GGG 0.567742 tig0015809:-56501 None:intergenic
TATGGTGTACTCTTTCACAC+TGG 0.567865 tig0015809:+56800 Msa1356600:three_prime_UTR
GAAGCCTGCAGCTGTTGTGA+AGG 0.567977 tig0015809:+51974 Msa1356600:CDS
GCTCGTTTGACTTCTTTCGA+AGG 0.577103 tig0015809:-55871 None:intergenic
GTGTTGCAGCAAATGTATAC+CGG 0.577878 tig0015809:-56727 None:intergenic
CTGGTAGTGTGGCCCAAAGA+GGG 0.578324 tig0015809:-51876 None:intergenic
ATTACAGTAGGCCTTAATTG+TGG 0.580967 tig0015809:+56662 Msa1356600:three_prime_UTR
TGACCCCTAAATACCGATGG+AGG 0.582901 tig0015809:-56412 None:intergenic
TTTGGAATTCTCCTATTGGG+TGG 0.589480 tig0015809:+51688 Msa1356600:five_prime_UTR
ACCCCTAAATACCGATGGAG+GGG 0.591422 tig0015809:-56410 None:intergenic
CATGTGTGGAACACTCTGGC+AGG 0.593828 tig0015809:-53433 None:intergenic
GGCTTGTCAAATTTAAAACA+AGG 0.594239 tig0015809:+52275 Msa1356600:CDS
GACCCCTAAATACCGATGGA+GGG 0.595603 tig0015809:-56411 None:intergenic
ATCACAGCGCAATTGTTCCA+TGG 0.596198 tig0015809:+52662 Msa1356600:CDS
CTGCCAGAGTGTTCCACACA+TGG 0.600132 tig0015809:+53434 Msa1356600:CDS
TCTGGTAGTGTGGCCCAAAG+AGG 0.600966 tig0015809:-51877 None:intergenic
TGACCGTGTCATGAAGGGCA+TGG 0.603142 tig0015809:-56496 None:intergenic
CATTGACCCCTAAATACCGA+TGG 0.603227 tig0015809:-56415 None:intergenic
TATCCATGCCCTTCATGACA+CGG 0.605173 tig0015809:+56493 Msa1356600:CDS
TCGTTTGACTTCTTTCGAAG+GGG 0.606212 tig0015809:-55869 None:intergenic
AACCTGTCTTACAGATGTGT+GGG 0.606697 tig0015809:+53577 Msa1356600:intron
GAACCTGTCTTACAGATGTG+TGG 0.607400 tig0015809:+53576 Msa1356600:intron
ATTGTGCCCAACCCCTCCAT+CGG 0.607814 tig0015809:+56399 Msa1356600:CDS
AGTGGAGAACAGCGGCGGCG+AGG 0.608765 tig0015809:-51368 None:intergenic
AAAGAGGGAGAACTAAGAGT+TGG 0.613517 tig0015809:-51861 None:intergenic
TATTGCACACTGGGCACATG+GGG 0.615050 tig0015809:+53386 Msa1356600:CDS
CCACCATGTGTGGAACACTC+TGG 0.619780 tig0015809:-53437 None:intergenic
AGGCATCCACTAATTACAGT+AGG 0.623139 tig0015809:+56650 Msa1356600:three_prime_UTR
TGACGGTTGATGCACGAACA+GGG 0.628972 tig0015809:-51821 None:intergenic
GATGGAGGGGTTGGGCACAA+TGG 0.630626 tig0015809:-56397 None:intergenic
AAATTTAAAACAAGGAGATG+AGG 0.633993 tig0015809:+52283 Msa1356600:CDS
TATTTATGGATGTAGTGCAA+AGG 0.635359 tig0015809:+52130 Msa1356600:intron
GCCAAGTCTGACACGTGATG+TGG 0.638545 tig0015809:-51778 None:intergenic
CTATTAGAGATATTGCACAC+TGG 0.643145 tig0015809:+53376 Msa1356600:CDS
ATATTGCACACTGGGCACAT+GGG 0.643244 tig0015809:+53385 Msa1356600:CDS
AGCTGATTCATACTCGTCTG+TGG 0.647061 tig0015809:-52153 None:intergenic
ACGAGTATGAATCAGCTAGA+CGG 0.649988 tig0015809:+52159 Msa1356600:CDS
CTATCTATGAGATCAGCAAG+AGG 0.652182 tig0015809:-56629 None:intergenic
AGCTTAGTGGAGAACAGCGG+CGG 0.652892 tig0015809:-51373 None:intergenic
ATCGGGGCATACATTACTTG+AGG 0.654297 tig0015809:+52036 Msa1356600:CDS
TGGTGAAGTATAGGGAAATG+GGG 0.664059 tig0015809:-51900 None:intergenic
TATAAGAATCCAATGCCTGT+AGG 0.671673 tig0015809:-53600 None:intergenic
GTATGAATCAGCTAGACGGA+AGG 0.672338 tig0015809:+52163 Msa1356600:CDS
ACCCCTCCATCGGTATTTAG+GGG 0.674227 tig0015809:+56409 Msa1356600:CDS
CTATTTCTACAACACTAAGG+AGG 0.678567 tig0015809:+56457 Msa1356600:CDS
GAAATGTTGCAAGATCAGTA+GGG 0.688737 tig0015809:-55927 None:intergenic
ATGGAGGCATGGAAGACAGG+AGG 0.692069 tig0015809:-53635 None:intergenic
CCAGAGTGTTCCACACATGG+TGG 0.696122 tig0015809:+53437 Msa1356600:CDS
AAGTTCACAAACCTGGACGG+AGG 0.708907 tig0015809:-53887 None:intergenic
TACAATTCAAACGTGCATCG+GGG 0.710508 tig0015809:+52020 Msa1356600:CDS
CAGAGCTTAGTGGAGAACAG+CGG 0.747768 tig0015809:-51376 None:intergenic
CAGGGAGATAAGTTAAACGG+CGG 0.749242 tig0015809:-51803 None:intergenic
TGATTGAACAGCAATAACTG+GGG 0.771247 tig0015809:-51746 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTATTTAATTCCATTT+TGG + tig0015809:51442-51461 Msa1356600:intron 10.0%
!!! TAAACAATTTTTTATGAAAA+AGG + tig0015809:56033-56052 Msa1356600:intron 10.0%
!!! TTATTCATAAACTTTTATAT+AGG + tig0015809:56118-56137 Msa1356600:intron 10.0%
!! TGGCTATTTATTTATTATTA+TGG - tig0015809:51169-51188 None:intergenic 15.0%
!! TCATGTTTAAAAATTTAGAT+GGG - tig0015809:52407-52426 None:intergenic 15.0%
!! ATCATGTTTAAAAATTTAGA+TGG - tig0015809:52408-52427 None:intergenic 15.0%
!! TATAATAACTTACCTAAAAA+TGG - tig0015809:53657-53676 None:intergenic 15.0%
!! AAAACAAAATCTTATTAACA+TGG - tig0015809:53770-53789 None:intergenic 15.0%
!!! TGTATATCATTTTTAAGATA+AGG - tig0015809:53935-53954 None:intergenic 15.0%
!! ATCTTAAAAATGATATACAT+TGG + tig0015809:53936-53955 Msa1356600:intron 15.0%
!! GGTTATATTAAATTTAGAAA+AGG - tig0015809:54239-54258 None:intergenic 15.0%
!! AATAAATAGCCAGTAAAAAT+TGG + tig0015809:51177-51196 Msa1356600:five_prime_UTR 20.0%
!! ATCATAATTCAATTCATACT+AGG + tig0015809:51402-51421 Msa1356600:five_prime_UTR 20.0%
!!! ATTATTGTGCTTGTTAAATT+TGG + tig0015809:52064-52083 Msa1356600:intron 20.0%
!!! TGTTAAATTTGGAATTACAT+TGG + tig0015809:52075-52094 Msa1356600:intron 20.0%
!! TTTATGTGCACAATTATTTA+TGG + tig0015809:52116-52135 Msa1356600:intron 20.0%
!! CATGTTTAAAAATTTAGATG+GGG - tig0015809:52406-52425 None:intergenic 20.0%
!!! TTGTGCATATTTTTAAGATT+CGG + tig0015809:52434-52453 Msa1356600:intron 20.0%
!! ATCAAATGTGATATTGAAAT+AGG + tig0015809:52482-52501 Msa1356600:intron 20.0%
!!! TTTTACATGAGCATATTTAT+TGG - tig0015809:52595-52614 None:intergenic 20.0%
!!! TTTATAGGTTTTGACATTAA+CGG + tig0015809:52909-52928 Msa1356600:intron 20.0%
!! ATTTCCAATATTCAACTATA+AGG + tig0015809:53073-53092 Msa1356600:intron 20.0%
!! TTTCCAATATTCAACTATAA+GGG + tig0015809:53074-53093 Msa1356600:intron 20.0%
!!! ACCAAGTTTAAATGTTTTTA+GGG - tig0015809:53182-53201 None:intergenic 20.0%
!! TTTAGGTAAGTTATTATACA+CGG + tig0015809:53659-53678 Msa1356600:intron 20.0%
!! AATGATTTCAGATGTATATT+TGG + tig0015809:53844-53863 Msa1356600:CDS 20.0%
!! GTATCTTATTATTATATCTG+AGG + tig0015809:54344-54363 Msa1356600:intron 20.0%
!! ATTATAACGATAACATTGAA+GGG - tig0015809:55402-55421 None:intergenic 20.0%
!! AATTATAACGATAACATTGA+AGG - tig0015809:55403-55422 None:intergenic 20.0%
!! AAAATCATTAATTTAGCTAG+TGG - tig0015809:55430-55449 None:intergenic 20.0%
!!! TTTGTAACACATAAATTTTC+AGG - tig0015809:56704-56723 None:intergenic 20.0%
!! TCAATGAATTTAGAGTAGAA+AGG - tig0015809:51475-51494 None:intergenic 25.0%
!!! TTTTTTCTTAGCCAAGATTT+TGG + tig0015809:51670-51689 Msa1356600:five_prime_UTR 25.0%
!! TTGGAATTACATTGGTAATT+TGG + tig0015809:52083-52102 Msa1356600:intron 25.0%
! TAATTGTGCACATAAACATT+TGG - tig0015809:52112-52131 None:intergenic 25.0%
!! AAATTTAAAACAAGGAGATG+AGG + tig0015809:52283-52302 Msa1356600:CDS 25.0%
! AAGTTCTATTCCTTTATGTT+TGG + tig0015809:52556-52575 Msa1356600:intron 25.0%
! TAATGACAATCCAAACATAA+AGG - tig0015809:52569-52588 None:intergenic 25.0%
! TTACATACACTCATATAAAG+AGG + tig0015809:53050-53069 Msa1356600:intron 25.0%
! ACCCTAAAAACATTTAAACT+TGG + tig0015809:53178-53197 Msa1356600:intron 25.0%
!! CACCAAGTTTAAATGTTTTT+AGG - tig0015809:53183-53202 None:intergenic 25.0%
! AAAAACCATTGAAACAATTG+GGG - tig0015809:53238-53257 None:intergenic 25.0%
! GAAAAACCATTGAAACAATT+GGG - tig0015809:53239-53258 None:intergenic 25.0%
! TGAAAAACCATTGAAACAAT+TGG - tig0015809:53240-53259 None:intergenic 25.0%
! TGGATTCTTATATGGTAAAA+TGG + tig0015809:53611-53630 Msa1356600:CDS 25.0%
! AATAACTTACCTAAAAATGG+AGG - tig0015809:53654-53673 None:intergenic 25.0%
! ACATGAACAACTAGTTAAAA+TGG + tig0015809:53707-53726 Msa1356600:intron 25.0%
! AGAAAAAATCCTGTTTGTTT+AGG + tig0015809:53742-53761 Msa1356600:intron 25.0%
!! TTTTGTAGCTAATACATTTC+CGG + tig0015809:53786-53805 Msa1356600:intron 25.0%
!! AAAAATGATATACATTGGCT+TGG + tig0015809:53941-53960 Msa1356600:intron 25.0%
!!! AAAATGATATACATTGGCTT+GGG + tig0015809:53942-53961 Msa1356600:intron 25.0%
!!! TTTTGGTTATAGAATCCTAT+GGG - tig0015809:54114-54133 None:intergenic 25.0%
!!! TTTTTGGTTATAGAATCCTA+TGG - tig0015809:54115-54134 None:intergenic 25.0%
!!! TGGTAGATCGAATAATTTTT+TGG - tig0015809:54131-54150 None:intergenic 25.0%
! ATTGACAACGATCATTTAAA+TGG - tig0015809:54151-54170 None:intergenic 25.0%
! GATACAATACAAGTAATTGA+TGG - tig0015809:54329-54348 None:intergenic 25.0%
!! ATTTTACCATACTAGATTTG+AGG + tig0015809:54369-54388 Msa1356600:intron 25.0%
! TTTATAGTCAATAAGACTGA+AGG - tig0015809:54496-54515 None:intergenic 25.0%
! AAATCAACTAAATCATAACG+AGG - tig0015809:54704-54723 None:intergenic 25.0%
! AAATACAAGAATAAACCACA+GGG - tig0015809:54909-54928 None:intergenic 25.0%
! TAAATACAAGAATAAACCAC+AGG - tig0015809:54910-54929 None:intergenic 25.0%
! AAGATTCACTTCTAATCATT+TGG + tig0015809:54960-54979 Msa1356600:intron 25.0%
! AGATTCACTTCTAATCATTT+GGG + tig0015809:54961-54980 Msa1356600:intron 25.0%
!! AGCTTAACTACAAGTTATTT+TGG - tig0015809:55134-55153 None:intergenic 25.0%
! AATATACATTAATGAGGTTG+AGG - tig0015809:55352-55371 None:intergenic 25.0%
!! GCTTTGAATATACATTAATG+AGG - tig0015809:55358-55377 None:intergenic 25.0%
! TTATTAGGTGAAAACAATGT+AGG + tig0015809:55578-55597 Msa1356600:intron 25.0%
!! TATGACATCCAAATTTTCAT+AGG + tig0015809:55780-55799 Msa1356600:intron 25.0%
! AATAAGTTAAAAACAACCCA+TGG + tig0015809:56141-56160 Msa1356600:intron 25.0%
! TAATTGATTACAGACTAAGA+AGG - tig0015809:56257-56276 None:intergenic 25.0%
!! TACTAAATTGCCCAAATTTT+CGG + tig0015809:56275-56294 Msa1356600:intron 25.0%
! ATTTATGTGTTACAAAATGC+CGG + tig0015809:56708-56727 Msa1356600:three_prime_UTR 25.0%
! AATTTATACTCGCAATAGTA+TGG + tig0015809:56782-56801 Msa1356600:three_prime_UTR 25.0%
! AAAGTCGAACCAATTTTTAC+TGG - tig0015809:51189-51208 None:intergenic 30.0%
! AATTTAGAGTAGAAAGGAGA+GGG - tig0015809:51469-51488 None:intergenic 30.0%
GAAGAGAAACATTAAAGAGT+CGG - tig0015809:51627-51646 None:intergenic 30.0%
ATAGGAGAATTCCAAAATCT+TGG - tig0015809:51684-51703 None:intergenic 30.0%
!!! AGATTTTGGAATTCTCCTAT+TGG + tig0015809:51684-51703 Msa1356600:five_prime_UTR 30.0%
!!! GATTTTGGAATTCTCCTATT+GGG + tig0015809:51685-51704 Msa1356600:five_prime_UTR 30.0%
! GAATTACATTGGTAATTTGG+AGG + tig0015809:52086-52105 Msa1356600:intron 30.0%
TATTTATGGATGTAGTGCAA+AGG + tig0015809:52130-52149 Msa1356600:intron 30.0%
TCAATCTAGTAGCTTATTCT+TGG + tig0015809:52252-52271 Msa1356600:CDS 30.0%
CAATCTAGTAGCTTATTCTT+GGG + tig0015809:52253-52272 Msa1356600:CDS 30.0%
AATCTAGTAGCTTATTCTTG+GGG + tig0015809:52254-52273 Msa1356600:CDS 30.0%
! GGCTTGTCAAATTTAAAACA+AGG + tig0015809:52275-52294 Msa1356600:CDS 30.0%
!!! ATGTTTGGATTAGCGTATTT+TGG + tig0015809:52349-52368 Msa1356600:intron 30.0%
!! GAAATAGGAGTTTTAATACC+AGG + tig0015809:52497-52516 Msa1356600:intron 30.0%
TAAAGGAATAGAACTTCAAC+CGG - tig0015809:52552-52571 None:intergenic 30.0%
CAATTAGTAGCTCAAAAAGT+TGG + tig0015809:52685-52704 Msa1356600:CDS 30.0%
! CTATATCTGGAATTTCATCT+TGG - tig0015809:52738-52757 None:intergenic 30.0%
TCCAGATATAGACAAATTGA+AGG + tig0015809:52747-52766 Msa1356600:CDS 30.0%
TCCTTCAATTTGTCTATATC+TGG - tig0015809:52751-52770 None:intergenic 30.0%
AAAAGTTTCTGTATTCGTAC+TGG - tig0015809:52993-53012 None:intergenic 30.0%
AGTCCCTTATAGTTGAATAT+TGG - tig0015809:53080-53099 None:intergenic 30.0%
AAAACCATTGAAACAATTGG+GGG - tig0015809:53237-53256 None:intergenic 30.0%
CTATCATTGTGGAAAATAAG+AGG - tig0015809:53271-53290 None:intergenic 30.0%
!! GAGTAAAAGTACTATCATTG+TGG - tig0015809:53282-53301 None:intergenic 30.0%
TATTAGAGATATTGCACACT+GGG + tig0015809:53377-53396 Msa1356600:CDS 30.0%
ACTAGTTGTTCATGTTTGAT+AGG - tig0015809:53702-53721 None:intergenic 30.0%
GAAAAAAAAGTTCACAAACC+TGG - tig0015809:53897-53916 None:intergenic 30.0%
TTTGGTTATAGAATCCTATG+GGG - tig0015809:54113-54132 None:intergenic 30.0%
AGAGTTTCCATTTCTTATCT+TGG + tig0015809:54190-54209 Msa1356600:intron 30.0%
GAGTTTCCATTTCTTATCTT+GGG + tig0015809:54191-54210 Msa1356600:intron 30.0%
AAATGACTGTAGGTTATGAA+TGG - tig0015809:54260-54279 None:intergenic 30.0%
AGAAAACTAGAGTAATTCAC+AGG + tig0015809:54515-54534 Msa1356600:intron 30.0%
AAGAGGATAGTAAAGTAAAC+GGG - tig0015809:54585-54604 None:intergenic 30.0%
GAAGAGGATAGTAAAGTAAA+CGG - tig0015809:54586-54605 None:intergenic 30.0%
!! GGTATCATCTTTTGAAAATC+TGG + tig0015809:54775-54794 Msa1356600:intron 30.0%
CATTAGATGGTTAAGCAAAT+TGG - tig0015809:54805-54824 None:intergenic 30.0%
!! TTGGCTTTATTGTCATTAGA+TGG - tig0015809:54818-54837 None:intergenic 30.0%
CAATCAATACATTAAGTGCT+TGG - tig0015809:54837-54856 None:intergenic 30.0%
CTGATCAAGTTAAACATTGT+CGG - tig0015809:55189-55208 None:intergenic 30.0%
GAAGAAGTAAAACAACAATC+AGG - tig0015809:55286-55305 None:intergenic 30.0%
! CAAAATCAGTTTTCATACAG+AGG + tig0015809:55508-55527 Msa1356600:intron 30.0%
CTAACACTCACTTTCTTATT+AGG + tig0015809:55563-55582 Msa1356600:intron 30.0%
TTGTTGGGTTAAATCAATGT+AGG - tig0015809:55644-55663 None:intergenic 30.0%
CTAACACTTATTCTCTTGTT+GGG - tig0015809:55659-55678 None:intergenic 30.0%
TCTAACACTTATTCTCTTGT+TGG - tig0015809:55660-55679 None:intergenic 30.0%
TATTTCATCTTCTTACCTGT+TGG - tig0015809:55957-55976 None:intergenic 30.0%
AACAAGAAAATGCATATAGC+TGG - tig0015809:55986-56005 None:intergenic 30.0%
TTAACTAATGACATGTCCAT+GGG - tig0015809:56160-56179 None:intergenic 30.0%
ATTAACTAATGACATGTCCA+TGG - tig0015809:56161-56180 None:intergenic 30.0%
AGTGTCTATGTCATGAAATA+AGG + tig0015809:56210-56229 Msa1356600:intron 30.0%
CCAATTACTACCGAAAATTT+GGG - tig0015809:56288-56307 None:intergenic 30.0%
TCCAATTACTACCGAAAATT+TGG - tig0015809:56289-56308 None:intergenic 30.0%
ACATCATCGAAATTCAAGAA+AGG - tig0015809:56340-56359 None:intergenic 30.0%
! ATGATGTATCATTTTCAGCA+TGG + tig0015809:56353-56372 Msa1356600:intron 30.0%
CTTCAATTCATTCAAGTAGT+CGG + tig0015809:56523-56542 Msa1356600:exon 30.0%
!!! ATTTTGACTGTACATCAGTT+AGG + tig0015809:56568-56587 Msa1356600:three_prime_UTR 30.0%
!! TTAGGATTGGTTCAATTGAT+AGG + tig0015809:56586-56605 Msa1356600:three_prime_UTR 30.0%
GACATGTTATTCCACAATTA+AGG - tig0015809:56676-56695 None:intergenic 30.0%
!! GTAACACATAAATTTTCAGG+AGG - tig0015809:56701-56720 None:intergenic 30.0%
TTATGATGATCAGAGCTTAG+TGG - tig0015809:51389-51408 None:intergenic 35.0%
! GAATTTAGAGTAGAAAGGAG+AGG - tig0015809:51470-51489 None:intergenic 35.0%
!! ATAAAAGTTTTGACCAGGGT+GGG - tig0015809:51519-51538 None:intergenic 35.0%
!! AGCCATAAAAGTTTTGACCA+GGG - tig0015809:51523-51542 None:intergenic 35.0%
!! TAGCCATAAAAGTTTTGACC+AGG - tig0015809:51524-51543 None:intergenic 35.0%
AATCATGCAACAAACACCAT+CGG - tig0015809:51580-51599 None:intergenic 35.0%
TGATTGAACAGCAATAACTG+GGG - tig0015809:51749-51768 None:intergenic 35.0%
GTGATTGAACAGCAATAACT+GGG - tig0015809:51750-51769 None:intergenic 35.0%
AGTGATTGAACAGCAATAAC+TGG - tig0015809:51751-51770 None:intergenic 35.0%
GAACAGGGAGATAAGTTAAA+CGG - tig0015809:51809-51828 None:intergenic 35.0%
TTACTTCCTGGTGAAGTATA+GGG - tig0015809:51911-51930 None:intergenic 35.0%
TTTACTTCCTGGTGAAGTAT+AGG - tig0015809:51912-51931 None:intergenic 35.0%
ATACTTCACCAGGAAGTAAA+TGG + tig0015809:51912-51931 Msa1356600:CDS 35.0%
GCATTGCAAGACTATTATGA+AGG + tig0015809:51996-52015 Msa1356600:CDS 35.0%
GTTACAATTCAAACGTGCAT+CGG + tig0015809:52018-52037 Msa1356600:CDS 35.0%
TTACAATTCAAACGTGCATC+GGG + tig0015809:52019-52038 Msa1356600:CDS 35.0%
!! ATTTCAACTTGCTGCATGTT+TGG + tig0015809:52334-52353 Msa1356600:intron 35.0%
!! TTAAGATTCGGAGAGTGTTA+AGG + tig0015809:52446-52465 Msa1356600:intron 35.0%
!! ATAGGAGTTTTAATACCAGG+AGG + tig0015809:52500-52519 Msa1356600:intron 35.0%
AAAGGAATAGAACTTCAACC+GGG - tig0015809:52551-52570 None:intergenic 35.0%
! TTTTGAGCTACTAATTGCCA+TGG - tig0015809:52682-52701 None:intergenic 35.0%
CATCATGTTTCAAATGTGCT+TGG + tig0015809:52805-52824 Msa1356600:CDS 35.0%
! TTTTGACATTAACGGTCTTC+TGG + tig0015809:52917-52936 Msa1356600:intron 35.0%
! CATGTTTGCTAAGTACTAGT+CGG - tig0015809:53121-53140 None:intergenic 35.0%
TATTGGGTCTCAATATGCAT+AGG - tig0015809:53149-53168 None:intergenic 35.0%
!!! AATGTTTTTAGGGTCACGTT+GGG - tig0015809:53172-53191 None:intergenic 35.0%
!!! AAATGTTTTTAGGGTCACGT+TGG - tig0015809:53173-53192 None:intergenic 35.0%
CAGTGTGCAATATCTCTAAT+AGG - tig0015809:53378-53397 None:intergenic 35.0%
CTATTAGAGATATTGCACAC+TGG + tig0015809:53376-53395 Msa1356600:CDS 35.0%
CAACAAGAAAATCAGCATCA+AGG - tig0015809:53476-53495 None:intergenic 35.0%
TATAAGAATCCAATGCCTGT+AGG - tig0015809:53603-53622 None:intergenic 35.0%
!! ACAGGCATTGGATTCTTATA+TGG + tig0015809:53603-53622 Msa1356600:CDS 35.0%
AAAAAGTTCACAAACCTGGA+CGG - tig0015809:53893-53912 None:intergenic 35.0%
!! ATTGGTATTTTGAACCCCAT+AGG + tig0015809:54096-54115 Msa1356600:intron 35.0%
ATCAGTCCCAAGATAAGAAA+TGG - tig0015809:54200-54219 None:intergenic 35.0%
AAAAAATTAGCACTGTGAGG+CGG - tig0015809:54287-54306 None:intergenic 35.0%
AGCAAAAAATTAGCACTGTG+AGG - tig0015809:54290-54309 None:intergenic 35.0%
ATTGGTGAAGCAATTGGATT+AGG + tig0015809:54406-54425 Msa1356600:CDS 35.0%
CAGCAATTGATTACTTGTCT+GGG + tig0015809:54431-54450 Msa1356600:CDS 35.0%
! ATTGATTACTTGTCTGGGAT+TGG + tig0015809:54436-54455 Msa1356600:CDS 35.0%
! TTGATTACTTGTCTGGGATT+GGG + tig0015809:54437-54456 Msa1356600:CDS 35.0%
TACTTTACTATCCTCTTCTG+TGG + tig0015809:54588-54607 Msa1356600:intron 35.0%
!! TGAAGCTTTTTCTCCTTCAT+GGG + tig0015809:54754-54773 Msa1356600:intron 35.0%
TCAAAAGATGATACCCATGA+AGG - tig0015809:54770-54789 None:intergenic 35.0%
CAACAATCAGGATGACAAAA+TGG - tig0015809:55274-55293 None:intergenic 35.0%
! TTTTCATACAGAGGATTGCT+AGG + tig0015809:55517-55536 Msa1356600:intron 35.0%
TAGGTCCTACTACTTTATGT+GGG + tig0015809:55597-55616 Msa1356600:intron 35.0%
! AAATTTTCATAGGTCGAGCT+GGG + tig0015809:55790-55809 Msa1356600:intron 35.0%
TCCCAAATATTCGCATCTAT+GGG + tig0015809:55842-55861 Msa1356600:CDS 35.0%
GAAATGTTGCAAGATCAGTA+GGG - tig0015809:55930-55949 None:intergenic 35.0%
AGAAATGTTGCAAGATCAGT+AGG - tig0015809:55931-55950 None:intergenic 35.0%
TACTGATCTTGCAACATTTC+TGG + tig0015809:55930-55949 Msa1356600:CDS 35.0%
! CCCAAATTTTCGGTAGTAAT+TGG + tig0015809:56285-56304 Msa1356600:intron 35.0%
ATTGGAATAGCTGTTGAACT+TGG + tig0015809:56303-56322 Msa1356600:intron 35.0%
CCTTAGTGTTGTAGAAATAG+AGG - tig0015809:56457-56476 None:intergenic 35.0%
!! CCTCTATTTCTACAACACTA+AGG + tig0015809:56454-56473 Msa1356600:CDS 35.0%
!! CTATTTCTACAACACTAAGG+AGG + tig0015809:56457-56476 Msa1356600:CDS 35.0%
TTAAGGCCTACTGTAATTAG+TGG - tig0015809:56659-56678 None:intergenic 35.0%
ATTACAGTAGGCCTTAATTG+TGG + tig0015809:56662-56681 Msa1356600:three_prime_UTR 35.0%
! TTTTAACCCAACCCAACCAA+TGG - tig0015809:51249-51268 None:intergenic 40.0%
GCAAGTATGCAACTGTTAAC+TGG - tig0015809:51273-51292 None:intergenic 40.0%
!! CATAAAAGTTTTGACCAGGG+TGG - tig0015809:51520-51539 None:intergenic 40.0%
! CACCCTGGTCAAAACTTTTA+TGG + tig0015809:51518-51537 Msa1356600:intron 40.0%
CAATTCACTGCTGCAAGTTA+AGG - tig0015809:51551-51570 None:intergenic 40.0%
CAGTGAATTGAATTTCCCGA+TGG + tig0015809:51561-51580 Msa1356600:intron 40.0%
ATCATGCAACAAACACCATC+GGG - tig0015809:51579-51598 None:intergenic 40.0%
! TTTGGAATTCTCCTATTGGG+TGG + tig0015809:51688-51707 Msa1356600:five_prime_UTR 40.0%
TTCAGCTACTGCTTGATTGA+CGG - tig0015809:51841-51860 None:intergenic 40.0%
AAAGAGGGAGAACTAAGAGT+TGG - tig0015809:51864-51883 None:intergenic 40.0%
! AACTCTTAGTTCTCCCTCTT+TGG + tig0015809:51863-51882 Msa1356600:CDS 40.0%
! ACTCTTAGTTCTCCCTCTTT+GGG + tig0015809:51864-51883 Msa1356600:CDS 40.0%
TGGTGAAGTATAGGGAAATG+GGG - tig0015809:51903-51922 None:intergenic 40.0%
CTGGTGAAGTATAGGGAAAT+GGG - tig0015809:51904-51923 None:intergenic 40.0%
!! GTTTTGAGCCATTTACTTCC+TGG - tig0015809:51923-51942 None:intergenic 40.0%
TACAATTCAAACGTGCATCG+GGG + tig0015809:52020-52039 Msa1356600:CDS 40.0%
ACGAGTATGAATCAGCTAGA+CGG + tig0015809:52159-52178 Msa1356600:CDS 40.0%
TTAATACCAGGAGGAGACAT+TGG + tig0015809:52509-52528 Msa1356600:intron 40.0%
TAATACCAGGAGGAGACATT+GGG + tig0015809:52510-52529 Msa1356600:intron 40.0%
ACCTATAAAGTTAACCCAGC+AGG - tig0015809:52898-52917 None:intergenic 40.0%
TTGAATCAACGTTGCATCGA+GGG + tig0015809:52958-52977 Msa1356600:intron 40.0%
CAGAAGCTACAGAAAAGCAA+AGG - tig0015809:53350-53369 None:intergenic 40.0%
! TCTTGTTGCTTCTTCTCACA+AGG + tig0015809:53488-53507 Msa1356600:CDS 40.0%
!! AGTAACTTGTTACACTGGTC+TGG - tig0015809:53556-53575 None:intergenic 40.0%
!! GGTTCAGTAACTTGTTACAC+TGG - tig0015809:53561-53580 None:intergenic 40.0%
AACCTGTCTTACAGATGTGT+GGG + tig0015809:53577-53596 Msa1356600:intron 40.0%
!! TCTTCCATGCCTCCATTTTT+AGG + tig0015809:53642-53661 Msa1356600:CDS 40.0%
CTTACCTAAAAATGGAGGCA+TGG - tig0015809:53649-53668 None:intergenic 40.0%
AACATGGTGCCTAAACAAAC+AGG - tig0015809:53754-53773 None:intergenic 40.0%
CCTGAAACAAGCAAAAGATG+AGG - tig0015809:53815-53834 None:intergenic 40.0%
! CCTCATCTTTTGCTTGTTTC+AGG + tig0015809:53812-53831 Msa1356600:intron 40.0%
! CATCTTTTGCTTGTTTCAGG+CGG + tig0015809:53815-53834 Msa1356600:intron 40.0%
!! ATGATATACATTGGCTTGGG+TGG + tig0015809:53945-53964 Msa1356600:intron 40.0%
TCAGCTTTCTTTCCTACACA+GGG - tig0015809:53988-54007 None:intergenic 40.0%
TTCAGCTTTCTTTCCTACAC+AGG - tig0015809:53989-54008 None:intergenic 40.0%
TGTAGGAAAGAAAGCTGAAG+AGG + tig0015809:53990-54009 Msa1356600:intron 40.0%
AGAAAGCTGAAGAGGATCAA+TGG + tig0015809:53998-54017 Msa1356600:intron 40.0%
TGGCTCTTGATGTTAGTCAT+TGG + tig0015809:54078-54097 Msa1356600:intron 40.0%
TGATCGTTGTCAATATCAGC+CGG + tig0015809:54157-54176 Msa1356600:intron 40.0%
TTATCTTGGGACTGATACTC+TGG + tig0015809:54204-54223 Msa1356600:intron 40.0%
! TACCATACTAGATTTGAGGC+TGG + tig0015809:54373-54392 Msa1356600:intron 40.0%
TTCCAGCCTCAAATCTAGTA+TGG - tig0015809:54378-54397 None:intergenic 40.0%
GCAGCAATTGATTACTTGTC+TGG + tig0015809:54430-54449 Msa1356600:CDS 40.0%
ACTCACCTCATACTCATGTA+TGG - tig0015809:54470-54489 None:intergenic 40.0%
! TACAGAAGGTATGGCATTTG+AGG - tig0015809:54729-54748 None:intergenic 40.0%
TTCAGCATCTACAGAAGGTA+TGG - tig0015809:54738-54757 None:intergenic 40.0%
AAAGCTTCAGCATCTACAGA+AGG - tig0015809:54743-54762 None:intergenic 40.0%
!! CTGAAGCTTTTTCTCCTTCA+TGG + tig0015809:54753-54772 Msa1356600:intron 40.0%
! AGAATAAACCACAGGGTGTT+TGG - tig0015809:54902-54921 None:intergenic 40.0%
TTCTAATCATTTGGGAGCTG+TGG + tig0015809:54969-54988 Msa1356600:intron 40.0%
GTAGGTCCTACTACTTTATG+TGG + tig0015809:55596-55615 Msa1356600:intron 40.0%
! AGGTCCAGCACTTTGAAAAT+GGG - tig0015809:55624-55643 None:intergenic 40.0%
! TAGGTCCAGCACTTTGAAAA+TGG - tig0015809:55625-55644 None:intergenic 40.0%
CAGCTCGACCTATGAAAATT+TGG - tig0015809:55791-55810 None:intergenic 40.0%
! CAAATTTTCATAGGTCGAGC+TGG + tig0015809:55789-55808 Msa1356600:intron 40.0%
TGGGTACATACCTGTATGAA+AGG + tig0015809:55809-55828 Msa1356600:CDS 40.0%
GTCCCAAATATTCGCATCTA+TGG + tig0015809:55841-55860 Msa1356600:CDS 40.0%
GCCCATAGATGCGAATATTT+GGG - tig0015809:55846-55865 None:intergenic 40.0%
! TCGTTTGACTTCTTTCGAAG+GGG - tig0015809:55872-55891 None:intergenic 40.0%
! CTCGTTTGACTTCTTTCGAA+GGG - tig0015809:55873-55892 None:intergenic 40.0%
GAATAGCTGTTGAACTTGGT+TGG + tig0015809:56307-56326 Msa1356600:intron 40.0%
! GTATCATTTTCAGCATGGAG+TGG + tig0015809:56358-56377 Msa1356600:intron 40.0%
GACTGTACATCAGTTAGGAT+TGG + tig0015809:56573-56592 Msa1356600:three_prime_UTR 40.0%
ATGAGATCAGCAAGAGGAAT+TGG - tig0015809:56626-56645 None:intergenic 40.0%
CTATCTATGAGATCAGCAAG+AGG - tig0015809:56632-56651 None:intergenic 40.0%
CTCTTGCTGATCTCATAGAT+AGG + tig0015809:56630-56649 Msa1356600:three_prime_UTR 40.0%
AGGCATCCACTAATTACAGT+AGG + tig0015809:56650-56669 Msa1356600:three_prime_UTR 40.0%
GTGTTGCAGCAAATGTATAC+CGG - tig0015809:56730-56749 None:intergenic 40.0%
TATGGTGTACTCTTTCACAC+TGG + tig0015809:56800-56819 Msa1356600:three_prime_UTR 40.0%
! TCGACTTTTAAGCCACGTGT+CGG + tig0015809:51201-51220 Msa1356600:five_prime_UTR 45.0%
CAAATGGTTTCCATCGCCAT+TGG + tig0015809:51230-51249 Msa1356600:five_prime_UTR 45.0%
AGAAAGGAGAGGGACCAAAA+TGG - tig0015809:51459-51478 None:intergenic 45.0%
! CAGGGTGGGTTTGTTTAGTT+TGG - tig0015809:51505-51524 None:intergenic 45.0%
CAAACTAAACAAACCCACCC+TGG + tig0015809:51503-51522 Msa1356600:intron 45.0%
TCCTATTGGGTGGTTAGCAA+TGG + tig0015809:51698-51717 Msa1356600:exon 45.0%
TCCATTGCTAACCACCCAAT+AGG - tig0015809:51702-51721 None:intergenic 45.0%
TAACTGGGGCTTGGAAGTTT+CGG - tig0015809:51735-51754 None:intergenic 45.0%
CAGGGAGATAAGTTAAACGG+CGG - tig0015809:51806-51825 None:intergenic 45.0%
AAGTATAGGGAAATGGGGTC+TGG - tig0015809:51898-51917 None:intergenic 45.0%
CCTGGTGAAGTATAGGGAAA+TGG - tig0015809:51905-51924 None:intergenic 45.0%
CCATTTCCCTATACTTCACC+AGG + tig0015809:51902-51921 Msa1356600:CDS 45.0%
ATCGGGGCATACATTACTTG+AGG + tig0015809:52036-52055 Msa1356600:CDS 45.0%
! AGCTGATTCATACTCGTCTG+TGG - tig0015809:52156-52175 None:intergenic 45.0%
GTATGAATCAGCTAGACGGA+AGG + tig0015809:52163-52182 Msa1356600:CDS 45.0%
AATACCAGGAGGAGACATTG+GGG + tig0015809:52511-52530 Msa1356600:intron 45.0%
ATCACAGCGCAATTGTTCCA+TGG + tig0015809:52662-52681 Msa1356600:CDS 45.0%
TGCTTGGTATGTTTCTCGTC+AGG + tig0015809:52821-52840 Msa1356600:intron 45.0%
TGTCAAAGATATCTGCCTGC+TGG + tig0015809:52880-52899 Msa1356600:intron 45.0%
GTCAAAGATATCTGCCTGCT+GGG + tig0015809:52881-52900 Msa1356600:intron 45.0%
GCCTGCTGGGTTAACTTTAT+AGG + tig0015809:52894-52913 Msa1356600:intron 45.0%
CTTGAATCAACGTTGCATCG+AGG + tig0015809:52957-52976 Msa1356600:intron 45.0%
TTAGGGTCACGTTGGGTATT+GGG - tig0015809:53165-53184 None:intergenic 45.0%
! TTTAGGGTCACGTTGGGTAT+TGG - tig0015809:53166-53185 None:intergenic 45.0%
AACAATTGGGGGCTGAAATG+AGG - tig0015809:53226-53245 None:intergenic 45.0%
TCAGCCCCCAATTGTTTCAA+TGG + tig0015809:53230-53249 Msa1356600:intron 45.0%
ATATTGCACACTGGGCACAT+GGG + tig0015809:53385-53404 Msa1356600:CDS 45.0%
TGAACATCAACCACCATGTG+TGG - tig0015809:53450-53469 None:intergenic 45.0%
! TGTTACACTGGTCTGGAATC+TGG - tig0015809:53549-53568 None:intergenic 45.0%
GAACCTGTCTTACAGATGTG+TGG + tig0015809:53576-53595 Msa1356600:intron 45.0%
! AAAATGGAGGCATGGAAGAC+AGG - tig0015809:53641-53660 None:intergenic 45.0%
CAAGCAAAAGATGAGGTTGC+CGG - tig0015809:53808-53827 None:intergenic 45.0%
!! ATATACATTGGCTTGGGTGG+AGG + tig0015809:53948-53967 Msa1356600:intron 45.0%
ACAGGTTTGATTCCCTGTGT+AGG + tig0015809:53973-53992 Msa1356600:intron 45.0%
TGACTAACATCAAGAGCCAG+AGG - tig0015809:54077-54096 None:intergenic 45.0%
GATCGTTGTCAATATCAGCC+GGG + tig0015809:54158-54177 Msa1356600:intron 45.0%
ATCGTTGTCAATATCAGCCG+GGG + tig0015809:54159-54178 Msa1356600:intron 45.0%
TCAATATCAGCCGGGGAAAA+AGG + tig0015809:54166-54185 Msa1356600:intron 45.0%
! GGAAACTCTTCCTTTTTCCC+CGG - tig0015809:54179-54198 None:intergenic 45.0%
AGGCGGAGAAAAATGACTGT+AGG - tig0015809:54270-54289 None:intergenic 45.0%
CCAATTGCTTCACCAATAGC+TGG - tig0015809:54403-54422 None:intergenic 45.0%
CCAGCTATTGGTGAAGCAAT+TGG + tig0015809:54400-54419 Msa1356600:CDS 45.0%
GCAAGCCATACATGAGTATG+AGG + tig0015809:54462-54481 Msa1356600:CDS 45.0%
ATGAGATGTCACCACAGAAG+AGG - tig0015809:54602-54621 None:intergenic 45.0%
TGGGTCCCACATAAAGTAGT+AGG - tig0015809:55605-55624 None:intergenic 45.0%
CTGACAGAAGCCTTTCATAC+AGG - tig0015809:55822-55841 None:intergenic 45.0%
GGCCCATAGATGCGAATATT+TGG - tig0015809:55847-55866 None:intergenic 45.0%
! GCTCGTTTGACTTCTTTCGA+AGG - tig0015809:55874-55893 None:intergenic 45.0%
! TGCAACATTTCTGGACCAAC+AGG + tig0015809:55939-55958 Msa1356600:CDS 45.0%
TAAATACCGATGGAGGGGTT+GGG - tig0015809:56408-56427 None:intergenic 45.0%
AACCCCTCCATCGGTATTTA+GGG + tig0015809:56408-56427 Msa1356600:CDS 45.0%
CATTGACCCCTAAATACCGA+TGG - tig0015809:56418-56437 None:intergenic 45.0%
TATCCATGCCCTTCATGACA+CGG + tig0015809:56493-56512 Msa1356600:CDS 45.0%
GAAGTTGACCGTGTCATGAA+GGG - tig0015809:56504-56523 None:intergenic 45.0%
AGAAGTTGACCGTGTCATGA+AGG - tig0015809:56505-56524 None:intergenic 45.0%
CATTTGCTTGATCCGACACG+TGG - tig0015809:51216-51235 None:intergenic 50.0%
CACGTGTCGGATCAAGCAAA+TGG + tig0015809:51214-51233 Msa1356600:five_prime_UTR 50.0%
TGGTTTCCATCGCCATTGGT+TGG + tig0015809:51234-51253 Msa1356600:five_prime_UTR 50.0%
! GGTTTCCATCGCCATTGGTT+GGG + tig0015809:51235-51254 Msa1356600:five_prime_UTR 50.0%
CAGAGCTTAGTGGAGAACAG+CGG - tig0015809:51379-51398 None:intergenic 50.0%
GAACAGCAATAACTGGGGCT+TGG - tig0015809:51744-51763 None:intergenic 50.0%
TCTGACACGTGATGTGGTTC+TGG - tig0015809:51775-51794 None:intergenic 50.0%
ACCACATCACGTGTCAGACT+TGG + tig0015809:51777-51796 Msa1356600:CDS 50.0%
! TGACGGTTGATGCACGAACA+GGG - tig0015809:51824-51843 None:intergenic 50.0%
! TTGACGGTTGATGCACGAAC+AGG - tig0015809:51825-51844 None:intergenic 50.0%
AATGCCTTCACAACAGCTGC+AGG - tig0015809:51981-52000 None:intergenic 50.0%
ATACCAGGAGGAGACATTGG+GGG + tig0015809:52512-52531 Msa1356600:intron 50.0%
GGGGGTTCTCTTTAATCACC+CGG + tig0015809:52530-52549 Msa1356600:intron 50.0%
GATATTGCACACTGGGCACA+TGG + tig0015809:53384-53403 Msa1356600:CDS 50.0%
TATTGCACACTGGGCACATG+GGG + tig0015809:53386-53405 Msa1356600:CDS 50.0%
TTACAGATGTGTGGGCCTAC+AGG + tig0015809:53585-53604 Msa1356600:intron 50.0%
! CTTTTGCTTGTTTCAGGCGG+TGG + tig0015809:53818-53837 Msa1356600:intron 50.0%
AAGTTCACAAACCTGGACGG+AGG - tig0015809:53890-53909 None:intergenic 50.0%
CGTTTCTCCTTCACTTCCTC+TGG + tig0015809:54058-54077 Msa1356600:intron 50.0%
TCAAGAGCCAGAGGAAGTGA+AGG - tig0015809:54068-54087 None:intergenic 50.0%
TCTTGGGACTGATACTCTGG+TGG + tig0015809:54207-54226 Msa1356600:intron 50.0%
CATGCAGTTGAGTCACTTCC+AGG + tig0015809:54863-54882 Msa1356600:intron 50.0%
!! TTTGGCTCTCGGATATGTCC+TGG - tig0015809:54884-54903 None:intergenic 50.0%
! CATTGAAGGGCACAGAGACT+AGG - tig0015809:55389-55408 None:intergenic 50.0%
! GGGACCCATTTTCAAAGTGC+TGG + tig0015809:55617-55636 Msa1356600:intron 50.0%
TTGACTTCTTTCGAAGGGGC+TGG - tig0015809:55868-55887 None:intergenic 50.0%
CATGGAGTGGCAATCAGATC+AGG + tig0015809:56371-56390 Msa1356600:CDS 50.0%
CTAAATACCGATGGAGGGGT+TGG - tig0015809:56409-56428 None:intergenic 50.0%
CAACCCCTCCATCGGTATTT+AGG + tig0015809:56407-56426 Msa1356600:CDS 50.0%
ACCCCTCCATCGGTATTTAG+GGG + tig0015809:56409-56428 Msa1356600:CDS 50.0%
ACCCCTAAATACCGATGGAG+GGG - tig0015809:56413-56432 None:intergenic 50.0%
GACCCCTAAATACCGATGGA+GGG - tig0015809:56414-56433 None:intergenic 50.0%
TGACCCCTAAATACCGATGG+AGG - tig0015809:56415-56434 None:intergenic 50.0%
! TCCATCGCCATTGGTTGGGT+TGG + tig0015809:51239-51258 Msa1356600:five_prime_UTR 55.0%
! CCATCGCCATTGGTTGGGTT+GGG + tig0015809:51240-51259 Msa1356600:five_prime_UTR 55.0%
AGCTTAGTGGAGAACAGCGG+CGG - tig0015809:51376-51395 None:intergenic 55.0%
GCCAAGTCTGACACGTGATG+TGG - tig0015809:51781-51800 None:intergenic 55.0%
! CTGGTAGTGTGGCCCAAAGA+GGG - tig0015809:51879-51898 None:intergenic 55.0%
! TCTGGTAGTGTGGCCCAAAG+AGG - tig0015809:51880-51899 None:intergenic 55.0%
! GGAAATGGGGTCTGGTAGTG+TGG - tig0015809:51890-51909 None:intergenic 55.0%
GAAGCCTGCAGCTGTTGTGA+AGG + tig0015809:51974-51993 Msa1356600:CDS 55.0%
CATGTGTGGAACACTCTGGC+AGG - tig0015809:53436-53455 None:intergenic 55.0%
! CTGCCAGAGTGTTCCACACA+TGG + tig0015809:53434-53453 Msa1356600:CDS 55.0%
CCACCATGTGTGGAACACTC+TGG - tig0015809:53440-53459 None:intergenic 55.0%
! CCAGAGTGTTCCACACATGG+TGG + tig0015809:53437-53456 Msa1356600:CDS 55.0%
GGCCCACACATCTGTAAGAC+AGG - tig0015809:53582-53601 None:intergenic 55.0%
ATGTGTGGGCCTACAGGCAT+TGG + tig0015809:53591-53610 Msa1356600:CDS 55.0%
! ATGGAGGCATGGAAGACAGG+AGG - tig0015809:53638-53657 None:intergenic 55.0%
CACAAACCTGGACGGAGGTT+CGG - tig0015809:53885-53904 None:intergenic 55.0%
GAGGCTGGAACACCAGCTAT+TGG + tig0015809:54388-54407 Msa1356600:CDS 55.0%
!! ACCACAGGGTGTTTGGCTCT+CGG - tig0015809:54895-54914 None:intergenic 55.0%
ATTGTGCCCAACCCCTCCAT+CGG + tig0015809:56399-56418 Msa1356600:CDS 55.0%
TGACCGTGTCATGAAGGGCA+TGG - tig0015809:56499-56518 None:intergenic 55.0%
CCCAACCCAACCAATGGCGA+TGG - tig0015809:51243-51262 None:intergenic 60.0%
GAACCCCCAATGTCTCCTCC+TGG - tig0015809:52518-52537 None:intergenic 60.0%
CTTATGCCGAACCTCCGTCC+AGG + tig0015809:53876-53895 Msa1356600:CDS 60.0%
!! TTGGCTTGGGTGGAGGTCAC+AGG + tig0015809:53955-53974 Msa1356600:intron 60.0%
TCCGAGAGCCAAACACCCTG+TGG + tig0015809:54891-54910 Msa1356600:intron 60.0%
GATGGAGGGGTTGGGCACAA+TGG - tig0015809:56400-56419 None:intergenic 60.0%
GCACACTGGGCACATGGGGT+TGG + tig0015809:53390-53409 Msa1356600:CDS 65.0%
GTGGAGAACAGCGGCGGCGA+GGG - tig0015809:51370-51389 None:intergenic 70.0%
AGTGGAGAACAGCGGCGGCG+AGG - tig0015809:51371-51390 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0015809 gene 51102 56861 51102 ID=Msa1356600;Name=Msa1356600
tig0015809 mRNA 51102 56861 51102 ID=Msa1356600-mRNA-1;Parent=Msa1356600;Name=Msa1356600-mRNA-1;_AED=0.22;_eAED=0.22;_QI=387|1|1|1|0.88|0.8|10|320|466
tig0015809 exon 51102 51423 51102 ID=Msa1356600-mRNA-1:exon:9998;Parent=Msa1356600-mRNA-1
tig0015809 exon 51652 52057 51652 ID=Msa1356600-mRNA-1:exon:9999;Parent=Msa1356600-mRNA-1
tig0015809 exon 52145 52304 52145 ID=Msa1356600-mRNA-1:exon:10000;Parent=Msa1356600-mRNA-1
tig0015809 exon 52640 52826 52640 ID=Msa1356600-mRNA-1:exon:10001;Parent=Msa1356600-mRNA-1
tig0015809 exon 53364 53509 53364 ID=Msa1356600-mRNA-1:exon:10002;Parent=Msa1356600-mRNA-1
tig0015809 exon 53591 53663 53591 ID=Msa1356600-mRNA-1:exon:10003;Parent=Msa1356600-mRNA-1
tig0015809 exon 53834 53897 53834 ID=Msa1356600-mRNA-1:exon:10004;Parent=Msa1356600-mRNA-1
tig0015809 exon 54384 54483 54384 ID=Msa1356600-mRNA-1:exon:10005;Parent=Msa1356600-mRNA-1
tig0015809 exon 55802 55960 55802 ID=Msa1356600-mRNA-1:exon:10006;Parent=Msa1356600-mRNA-1
tig0015809 exon 56371 56861 56371 ID=Msa1356600-mRNA-1:exon:10007;Parent=Msa1356600-mRNA-1
tig0015809 five_prime_UTR 51102 51423 51102 ID=Msa1356600-mRNA-1:five_prime_utr;Parent=Msa1356600-mRNA-1
tig0015809 five_prime_UTR 51652 51716 51652 ID=Msa1356600-mRNA-1:five_prime_utr;Parent=Msa1356600-mRNA-1
tig0015809 CDS 51717 52057 51717 ID=Msa1356600-mRNA-1:cds;Parent=Msa1356600-mRNA-1
tig0015809 CDS 52145 52304 52145 ID=Msa1356600-mRNA-1:cds;Parent=Msa1356600-mRNA-1
tig0015809 CDS 52640 52826 52640 ID=Msa1356600-mRNA-1:cds;Parent=Msa1356600-mRNA-1
tig0015809 CDS 53364 53509 53364 ID=Msa1356600-mRNA-1:cds;Parent=Msa1356600-mRNA-1
tig0015809 CDS 53591 53663 53591 ID=Msa1356600-mRNA-1:cds;Parent=Msa1356600-mRNA-1
tig0015809 CDS 53834 53897 53834 ID=Msa1356600-mRNA-1:cds;Parent=Msa1356600-mRNA-1
tig0015809 CDS 54384 54483 54384 ID=Msa1356600-mRNA-1:cds;Parent=Msa1356600-mRNA-1
tig0015809 CDS 55802 55960 55802 ID=Msa1356600-mRNA-1:cds;Parent=Msa1356600-mRNA-1
tig0015809 CDS 56371 56541 56371 ID=Msa1356600-mRNA-1:cds;Parent=Msa1356600-mRNA-1
tig0015809 three_prime_UTR 56542 56861 56542 ID=Msa1356600-mRNA-1:three_prime_utr;Parent=Msa1356600-mRNA-1
Gene Sequence

>Msa1356600

ATGGAAGTTTTGCTGCCGAAACTTCCAAGCCCCAGTTATTGCTGTTCAATCACTACCAGAACCACATCACGTGTCAGACTTGGCTTCCGCCGTTTAACTTATCTCCCTGTTCGTGCATCAACCGTCAATCAAGCAGTAGCTGAACCAACTCTTAGTTCTCCCTCTTTGGGCCACACTACCAGACCCCATTTCCCTATACTTCACCAGGAAGTAAATGGCTCAAAACTTGTTTACATAGACAATGCAGCAACGTCTCAGAAGCCTGCAGCTGTTGTGAAGGCATTGCAAGACTATTATGAAGGTTACAATTCAAACGTGCATCGGGGCATACATTACTTGAGTGCAAAGGCCACAGACGAGTATGAATCAGCTAGACGGAAGGTTGCAGCTTTTATAAATGCTTCTGATTCACGAGAAATTGTATTCACAAGAAATGCTACTGAAGCTATCAATCTAGTAGCTTATTCTTGGGGCTTGTCAAATTTAAAACAAGGAGATGAGATCGTACTTACAGTTGCTGAACATCACAGCGCAATTGTTCCATGGCAATTAGTAGCTCAAAAAGTTGGAGCTGTTTTGAAATTTGTGAATTTAAACCAAGATGAAATTCCAGATATAGACAAATTGAAGGAAATGCTTTCAAAGAAGACAAAAATAGTTGTTGTTCATCATGTTTCAAATGTGCTTGCTTCTGTTCTTCCTATTAGAGATATTGCACACTGGGCACATGGGGTTGGAGCAAAAGTTCTTGTAGATGCCTGCCAGAGTGTTCCACACATGGTGGTTGATGTTCAAAACCTTGATGCTGATTTTCTTGTTGCTTCTTCTCACAAGATGTGTGGGCCTACAGGCATTGGATTCTTATATGGTAAAATGGACCTCCTGTCTTCCATGCCTCCATTTTTAGGCGGTGGTGAAATGATTTCAGATGTATATTTGGATCATTCAACTTATGCCGAACCTCCGTCCAGATTTGAGGCTGGAACACCAGCTATTGGTGAAGCAATTGGATTAGGAGCAGCAATTGATTACTTGTCTGGGATTGGGATGCAAGCCATACATGAGTATGAGGTCGAGCTGGGTACATACCTGTATGAAAGGCTTCTGTCAGTCCCAAATATTCGCATCTATGGGCCAGCCCCTTCGAAAGAAGTCAAACGAGCTTCTCTTTGTTCTTTCAATGTTGAGAATTTGCACCCTACTGATCTTGCAACATTTCTGGACCAACAGCATGGAGTGGCAATCAGATCAGGTCACCATTGTGCCCAACCCCTCCATCGGTATTTAGGGGTCAATGCAAGCGCACGTGCTAGCCTCTATTTCTACAACACTAAGGAGGATGTCGACAACTTTATCCATGCCCTTCATGACACGGTCAACTTCTTCAATTCATTCAAGTAG

Protein sequence

>Msa1356600

MEVLLPKLPSPSYCCSITTRTTSRVRLGFRRLTYLPVRASTVNQAVAEPTLSSPSLGHTTRPHFPILHQEVNGSKLVYIDNAATSQKPAAVVKALQDYYEGYNSNVHRGIHYLSAKATDEYESARRKVAAFINASDSREIVFTRNATEAINLVAYSWGLSNLKQGDEIVLTVAEHHSAIVPWQLVAQKVGAVLKFVNLNQDEIPDIDKLKEMLSKKTKIVVVHHVSNVLASVLPIRDIAHWAHGVGAKVLVDACQSVPHMVVDVQNLDADFLVASSHKMCGPTGIGFLYGKMDLLSSMPPFLGGGEMISDVYLDHSTYAEPPSRFEAGTPAIGEAIGLGAAIDYLSGIGMQAIHEYEVELGTYLYERLLSVPNIRIYGPAPSKEVKRASLCSFNVENLHPTDLATFLDQQHGVAIRSGHHCAQPLHRYLGVNASARASLYFYNTKEDVDNFIHALHDTVNFFNSFK*