Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003890 | Msa1327980 | 0.803479 | 3.417660e-49 | -8.615850e-47 |
| Msa0021510 | Msa1327980 | 0.808673 | 2.758798e-50 | -8.615850e-47 |
| Msa0037570 | Msa1327980 | -0.804308 | 2.299341e-49 | -8.615850e-47 |
| Msa0621490 | Msa1327980 | 0.803141 | 4.015437e-49 | -8.615850e-47 |
| Msa0211150 | Msa1327980 | 0.808940 | 2.419306e-50 | -8.615850e-47 |
| Msa1276890 | Msa1327980 | 0.824376 | 8.349430e-54 | -8.615850e-47 |
| Msa1277660 | Msa1327980 | 0.804531 | 2.065564e-49 | -8.615850e-47 |
| Msa1327980 | Msa1328040 | 0.983998 | 2.675810e-159 | -8.615850e-47 |
| Msa1327980 | Msa1412530 | 0.807447 | 5.033314e-50 | -8.615850e-47 |
| Msa1327980 | Msa1466540 | 0.809980 | 1.446723e-50 | -8.615850e-47 |
| Msa1003620 | Msa1327980 | 0.814358 | 1.604506e-51 | -8.615850e-47 |
| Msa1014540 | Msa1327980 | 0.820003 | 8.628542e-53 | -8.615850e-47 |
| Msa1174910 | Msa1327980 | 0.810616 | 1.055129e-50 | -8.615850e-47 |
| Msa0871270 | Msa1327980 | 0.811342 | 7.346396e-51 | -8.615850e-47 |
| Msa0938220 | Msa1327980 | 0.816343 | 5.806684e-52 | -8.615850e-47 |
| Msa0974070 | Msa1327980 | 0.802491 | 5.471323e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 11 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCGGAGCCGGAAATAAAATT+TGG | 0.310961 | 8_4:-45685369 | Msa1327980:CDS |
| GTCGTATACAGCGGCGGAGC+CGG | 0.460313 | 8_4:-45685382 | Msa1327980:CDS |
| CGTACTGGAGTTAAGTGGTA+TGG | 0.485176 | 8_4:-45685520 | Msa1327980:CDS |
| TAGAATATGATAAAACGTAC+TGG | 0.488816 | 8_4:-45685535 | Msa1327980:CDS |
| AATGAGACGGTGATATGGGA+TGG | 0.537767 | 8_4:+45685481 | None:intergenic |
| AGCCGGAAATAAAATTTGGA+TGG | 0.541216 | 8_4:-45685365 | Msa1327980:CDS |
| ATGACATTGTTACAATGTGA+TGG | 0.550818 | 8_4:+45685436 | None:intergenic |
| GCCGGAAATAAAATTTGGAT+GGG | 0.580839 | 8_4:-45685364 | Msa1327980:CDS |
| GACGGTGATATGGGATGGAG+TGG | 0.602020 | 8_4:+45685486 | None:intergenic |
| TAAAACGTACTGGAGTTAAG+TGG | 0.625133 | 8_4:-45685525 | Msa1327980:CDS |
| TGACATTGTTACAATGTGAT+GGG | 0.627569 | 8_4:+45685437 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGTAGAAAATATAAAATA+TGG | + | chr8_4:45685426-45685445 | None:intergenic | 10.0% |
| !! | AAAGTAGAAAATATAAAATA+TGG | + | chr8_4:45685426-45685445 | None:intergenic | 10.0% |
| !!! | ATTAAGAATTTTTTAACTTC+TGG | - | chr8_4:45685394-45685413 | Msa1327980:CDS | 15.0% |
| !!! | TTAAGAATTTTTTAACTTCT+GGG | - | chr8_4:45685395-45685414 | Msa1327980:CDS | 15.0% |
| !!! | TCTACAAATGTATTTTATTT+AGG | - | chr8_4:45685445-45685464 | Msa1327980:CDS | 15.0% |
| !! | AATCATATTATTTATGTCTA+TGG | - | chr8_4:45686301-45686320 | Msa1327980:intron | 15.0% |
| !!! | ATTAAGAATTTTTTAACTTC+TGG | - | chr8_4:45685394-45685413 | Msa1327980:CDS | 15.0% |
| !!! | TTAAGAATTTTTTAACTTCT+GGG | - | chr8_4:45685395-45685414 | Msa1327980:CDS | 15.0% |
| !!! | TCTACAAATGTATTTTATTT+AGG | - | chr8_4:45685445-45685464 | Msa1327980:CDS | 15.0% |
| !! | AATCATATTATTTATGTCTA+TGG | - | chr8_4:45686301-45686320 | Msa1327980:intron | 15.0% |
| !! | AAATGAATGAAAATATAGAC+TGG | - | chr8_4:45685530-45685549 | Msa1327980:CDS | 20.0% |
| !!! | CTATTTTCGTTTTTGTTAAT+GGG | - | chr8_4:45686124-45686143 | Msa1327980:intron | 20.0% |
| !!! | TATTTTCGTTTTTGTTAATG+GGG | - | chr8_4:45686125-45686144 | Msa1327980:intron | 20.0% |
| !! | ATAAACATAACATAAGCAAA+TGG | + | chr8_4:45686522-45686541 | None:intergenic | 20.0% |
| !! | AGAAAATATCAGTTTCATTA+TGG | + | chr8_4:45686649-45686668 | None:intergenic | 20.0% |
| !! | ACCAATTATAAAAAATGAGA+CGG | + | chr8_4:45686750-45686769 | None:intergenic | 20.0% |
| !! | AAATGAATGAAAATATAGAC+TGG | - | chr8_4:45685530-45685549 | Msa1327980:CDS | 20.0% |
| !!! | CTATTTTCGTTTTTGTTAAT+GGG | - | chr8_4:45686124-45686143 | Msa1327980:intron | 20.0% |
| !!! | TATTTTCGTTTTTGTTAATG+GGG | - | chr8_4:45686125-45686144 | Msa1327980:intron | 20.0% |
| !! | ATAAACATAACATAAGCAAA+TGG | + | chr8_4:45686522-45686541 | None:intergenic | 20.0% |
| !! | AGAAAATATCAGTTTCATTA+TGG | + | chr8_4:45686649-45686668 | None:intergenic | 20.0% |
| !! | ACCAATTATAAAAAATGAGA+CGG | + | chr8_4:45686750-45686769 | None:intergenic | 20.0% |
| ! | TAGGAAGTTATATTATGATG+TGG | - | chr8_4:45685464-45685483 | Msa1327980:CDS | 25.0% |
| !!! | TCTTATTTCTGCTAACTAAT+AGG | - | chr8_4:45685710-45685729 | Msa1327980:intron | 25.0% |
| !!! | CTTATTTCTGCTAACTAATA+GGG | - | chr8_4:45685711-45685730 | Msa1327980:intron | 25.0% |
| !!! | TTATTTCTGCTAACTAATAG+GGG | - | chr8_4:45685712-45685731 | Msa1327980:intron | 25.0% |
| !! | TACTCATAATTTGCAAGAAA+TGG | + | chr8_4:45685966-45685985 | None:intergenic | 25.0% |
| ! | AGCAAATATCTATAGAAGTA+TGG | + | chr8_4:45686043-45686062 | None:intergenic | 25.0% |
| !!! | CTATAGATATTTGCTGATTT+AGG | - | chr8_4:45686048-45686067 | Msa1327980:intron | 25.0% |
| !!! | CTGTTTTAAAGTTTTGTTCT+TGG | - | chr8_4:45686091-45686110 | Msa1327980:intron | 25.0% |
| ! | CCATTAACAAAAACGAAAAT+AGG | + | chr8_4:45686126-45686145 | None:intergenic | 25.0% |
| !!! | CCTATTTTCGTTTTTGTTAA+TGG | - | chr8_4:45686123-45686142 | Msa1327980:intron | 25.0% |
| !!! | TCAACTTACTTCTTTAGTTT+TGG | - | chr8_4:45686191-45686210 | Msa1327980:intron | 25.0% |
| ! | AGTTGTTCTATAATGCTAAA+TGG | - | chr8_4:45686238-45686257 | Msa1327980:intron | 25.0% |
| ! | TAATGTTAAGTTAATGTTGC+AGG | - | chr8_4:45686344-45686363 | Msa1327980:intron | 25.0% |
| !!! | ACTTTGTTAGCTTATTGTTT+TGG | - | chr8_4:45686447-45686466 | Msa1327980:intron | 25.0% |
| !! | CTGTATTTTGCATTTTATCA+AGG | - | chr8_4:45686480-45686499 | Msa1327980:intron | 25.0% |
| ! | TAGAATATGATAAAACGTAC+TGG | - | chr8_4:45686680-45686699 | Msa1327980:intron | 25.0% |
| !!! | ACCGTCTCATTTTTTATAAT+TGG | - | chr8_4:45686746-45686765 | Msa1327980:intron | 25.0% |
| ! | TAGGAAGTTATATTATGATG+TGG | - | chr8_4:45685464-45685483 | Msa1327980:CDS | 25.0% |
| !!! | TCTTATTTCTGCTAACTAAT+AGG | - | chr8_4:45685710-45685729 | Msa1327980:intron | 25.0% |
| !!! | CTTATTTCTGCTAACTAATA+GGG | - | chr8_4:45685711-45685730 | Msa1327980:intron | 25.0% |
| !!! | TTATTTCTGCTAACTAATAG+GGG | - | chr8_4:45685712-45685731 | Msa1327980:intron | 25.0% |
| !! | TACTCATAATTTGCAAGAAA+TGG | + | chr8_4:45685966-45685985 | None:intergenic | 25.0% |
| ! | AGCAAATATCTATAGAAGTA+TGG | + | chr8_4:45686043-45686062 | None:intergenic | 25.0% |
| !!! | CTATAGATATTTGCTGATTT+AGG | - | chr8_4:45686048-45686067 | Msa1327980:intron | 25.0% |
| !!! | CTGTTTTAAAGTTTTGTTCT+TGG | - | chr8_4:45686091-45686110 | Msa1327980:intron | 25.0% |
| ! | CCATTAACAAAAACGAAAAT+AGG | + | chr8_4:45686126-45686145 | None:intergenic | 25.0% |
| !!! | CCTATTTTCGTTTTTGTTAA+TGG | - | chr8_4:45686123-45686142 | Msa1327980:intron | 25.0% |
| !!! | TCAACTTACTTCTTTAGTTT+TGG | - | chr8_4:45686191-45686210 | Msa1327980:intron | 25.0% |
| ! | AGTTGTTCTATAATGCTAAA+TGG | - | chr8_4:45686238-45686257 | Msa1327980:intron | 25.0% |
| ! | TAATGTTAAGTTAATGTTGC+AGG | - | chr8_4:45686344-45686363 | Msa1327980:intron | 25.0% |
| !!! | ACTTTGTTAGCTTATTGTTT+TGG | - | chr8_4:45686447-45686466 | Msa1327980:intron | 25.0% |
| !! | CTGTATTTTGCATTTTATCA+AGG | - | chr8_4:45686480-45686499 | Msa1327980:intron | 25.0% |
| ! | TAGAATATGATAAAACGTAC+TGG | - | chr8_4:45686680-45686699 | Msa1327980:intron | 25.0% |
| !!! | ACCGTCTCATTTTTTATAAT+TGG | - | chr8_4:45686746-45686765 | Msa1327980:intron | 25.0% |
| TTTATTCCTTTCCCATAAGA+TGG | + | chr8_4:45685354-45685373 | None:intergenic | 30.0% | |
| ! | TATCAGTAAGATTTGGTCAA+TGG | + | chr8_4:45685493-45685512 | None:intergenic | 30.0% |
| ATACGAGTTGTTTATTGTAG+AGG | - | chr8_4:45685578-45685597 | Msa1327980:intron | 30.0% | |
| ACTTAGAAATTGTATCAGTC+TGG | + | chr8_4:45685614-45685633 | None:intergenic | 30.0% | |
| ! | TATTTCTGCTAACTAATAGG+GGG | - | chr8_4:45685713-45685732 | Msa1327980:intron | 30.0% |
| ! | CATATCGCTTACAATTTGTT+TGG | - | chr8_4:45685742-45685761 | Msa1327980:intron | 30.0% |
| !! | GAGAATGTCATTGATTTAGT+TGG | + | chr8_4:45686173-45686192 | None:intergenic | 30.0% |
| ! | CTTGTTGGTTACAAATTTGA+CGG | - | chr8_4:45686416-45686435 | Msa1327980:intron | 30.0% |
| AAAAAATGAGACGGTGATAT+GGG | + | chr8_4:45686741-45686760 | None:intergenic | 30.0% | |
| TAAAAAATGAGACGGTGATA+TGG | + | chr8_4:45686742-45686761 | None:intergenic | 30.0% | |
| TGACATTGTTACAATGTGAT+GGG | + | chr8_4:45686781-45686800 | None:intergenic | 30.0% | |
| ATGACATTGTTACAATGTGA+TGG | + | chr8_4:45686782-45686801 | None:intergenic | 30.0% | |
| TTTATTCCTTTCCCATAAGA+TGG | + | chr8_4:45685354-45685373 | None:intergenic | 30.0% | |
| ! | TATCAGTAAGATTTGGTCAA+TGG | + | chr8_4:45685493-45685512 | None:intergenic | 30.0% |
| ATACGAGTTGTTTATTGTAG+AGG | - | chr8_4:45685578-45685597 | Msa1327980:intron | 30.0% | |
| ACTTAGAAATTGTATCAGTC+TGG | + | chr8_4:45685614-45685633 | None:intergenic | 30.0% | |
| ! | TATTTCTGCTAACTAATAGG+GGG | - | chr8_4:45685713-45685732 | Msa1327980:intron | 30.0% |
| ! | CATATCGCTTACAATTTGTT+TGG | - | chr8_4:45685742-45685761 | Msa1327980:intron | 30.0% |
| !! | GAGAATGTCATTGATTTAGT+TGG | + | chr8_4:45686173-45686192 | None:intergenic | 30.0% |
| ! | CTTGTTGGTTACAAATTTGA+CGG | - | chr8_4:45686416-45686435 | Msa1327980:intron | 30.0% |
| AAAAAATGAGACGGTGATAT+GGG | + | chr8_4:45686741-45686760 | None:intergenic | 30.0% | |
| TAAAAAATGAGACGGTGATA+TGG | + | chr8_4:45686742-45686761 | None:intergenic | 30.0% | |
| TGACATTGTTACAATGTGAT+GGG | + | chr8_4:45686781-45686800 | None:intergenic | 30.0% | |
| ATGACATTGTTACAATGTGA+TGG | + | chr8_4:45686782-45686801 | None:intergenic | 30.0% | |
| ! | ATGGTAGTGTTACCATCTTA+TGG | - | chr8_4:45685339-45685358 | Msa1327980:CDS | 35.0% |
| ! | TGGTAGTGTTACCATCTTAT+GGG | - | chr8_4:45685340-45685359 | Msa1327980:CDS | 35.0% |
| TGACCAAATCTTACTGATAG+AGG | - | chr8_4:45685494-45685513 | Msa1327980:CDS | 35.0% | |
| GACCAAATCTTACTGATAGA+GGG | - | chr8_4:45685495-45685514 | Msa1327980:CDS | 35.0% | |
| AACCCTCTATCAGTAAGATT+TGG | + | chr8_4:45685500-45685519 | None:intergenic | 35.0% | |
| AAATTGTATCAGTCTGGTGA+AGG | + | chr8_4:45685608-45685627 | None:intergenic | 35.0% | |
| TGTTAGTGACGTTATAAGGA+TGG | + | chr8_4:45685658-45685677 | None:intergenic | 35.0% | |
| CTTGTGTTAGTGACGTTATA+AGG | + | chr8_4:45685662-45685681 | None:intergenic | 35.0% | |
| AGAACGAGTTTCATCATCTA+TGG | - | chr8_4:45685684-45685703 | Msa1327980:intron | 35.0% | |
| !! | TGGCTCAGATGATTTTGAAA+TGG | + | chr8_4:45686023-45686042 | None:intergenic | 35.0% |
| AGGATGAATCAGTGTAGATT+TGG | - | chr8_4:45686364-45686383 | Msa1327980:intron | 35.0% | |
| GGTTATTCAATCTTCCTTGT+TGG | - | chr8_4:45686401-45686420 | Msa1327980:intron | 35.0% | |
| CGTCAAATTTGTAACCAACA+AGG | + | chr8_4:45686418-45686437 | None:intergenic | 35.0% | |
| GTTTATCTTGTGTAGAACAG+AGG | - | chr8_4:45686536-45686555 | Msa1327980:intron | 35.0% | |
| GCTATAACTCTGTAAAGTTG+TGG | - | chr8_4:45686609-45686628 | Msa1327980:intron | 35.0% | |
| TAAAACGTACTGGAGTTAAG+TGG | - | chr8_4:45686690-45686709 | Msa1327980:intron | 35.0% | |
| AGCCGGAAATAAAATTTGGA+TGG | - | chr8_4:45686850-45686869 | Msa1327980:intron | 35.0% | |
| GCCGGAAATAAAATTTGGAT+GGG | - | chr8_4:45686851-45686870 | Msa1327980:intron | 35.0% | |
| !! | GCCCATCCAAATTTTATTTC+CGG | + | chr8_4:45686855-45686874 | None:intergenic | 35.0% |
| ! | ATGGTAGTGTTACCATCTTA+TGG | - | chr8_4:45685339-45685358 | Msa1327980:CDS | 35.0% |
| ! | TGGTAGTGTTACCATCTTAT+GGG | - | chr8_4:45685340-45685359 | Msa1327980:CDS | 35.0% |
| TGACCAAATCTTACTGATAG+AGG | - | chr8_4:45685494-45685513 | Msa1327980:CDS | 35.0% | |
| GACCAAATCTTACTGATAGA+GGG | - | chr8_4:45685495-45685514 | Msa1327980:CDS | 35.0% | |
| AACCCTCTATCAGTAAGATT+TGG | + | chr8_4:45685500-45685519 | None:intergenic | 35.0% | |
| AAATTGTATCAGTCTGGTGA+AGG | + | chr8_4:45685608-45685627 | None:intergenic | 35.0% | |
| TGTTAGTGACGTTATAAGGA+TGG | + | chr8_4:45685658-45685677 | None:intergenic | 35.0% | |
| CTTGTGTTAGTGACGTTATA+AGG | + | chr8_4:45685662-45685681 | None:intergenic | 35.0% | |
| AGAACGAGTTTCATCATCTA+TGG | - | chr8_4:45685684-45685703 | Msa1327980:intron | 35.0% | |
| !! | TGGCTCAGATGATTTTGAAA+TGG | + | chr8_4:45686023-45686042 | None:intergenic | 35.0% |
| AGGATGAATCAGTGTAGATT+TGG | - | chr8_4:45686364-45686383 | Msa1327980:intron | 35.0% | |
| GGTTATTCAATCTTCCTTGT+TGG | - | chr8_4:45686401-45686420 | Msa1327980:intron | 35.0% | |
| CGTCAAATTTGTAACCAACA+AGG | + | chr8_4:45686418-45686437 | None:intergenic | 35.0% | |
| GTTTATCTTGTGTAGAACAG+AGG | - | chr8_4:45686536-45686555 | Msa1327980:intron | 35.0% | |
| GCTATAACTCTGTAAAGTTG+TGG | - | chr8_4:45686609-45686628 | Msa1327980:intron | 35.0% | |
| TAAAACGTACTGGAGTTAAG+TGG | - | chr8_4:45686690-45686709 | Msa1327980:intron | 35.0% | |
| AGCCGGAAATAAAATTTGGA+TGG | - | chr8_4:45686850-45686869 | Msa1327980:intron | 35.0% | |
| GCCGGAAATAAAATTTGGAT+GGG | - | chr8_4:45686851-45686870 | Msa1327980:intron | 35.0% | |
| !! | GCCCATCCAAATTTTATTTC+CGG | + | chr8_4:45686855-45686874 | None:intergenic | 35.0% |
| GTGTTACCATCTTATGGGAA+AGG | - | chr8_4:45685345-45685364 | Msa1327980:CDS | 40.0% | |
| TGACGTTATAAGGATGGTGA+GGG | + | chr8_4:45685652-45685671 | None:intergenic | 40.0% | |
| CAACACTGTCTACATCAAGA+GGG | + | chr8_4:45685783-45685802 | None:intergenic | 40.0% | |
| GATTTGGCATTTGCACATTC+TGG | - | chr8_4:45686380-45686399 | Msa1327980:intron | 40.0% | |
| GTGTTACCATCTTATGGGAA+AGG | - | chr8_4:45685345-45685364 | Msa1327980:CDS | 40.0% | |
| TGACGTTATAAGGATGGTGA+GGG | + | chr8_4:45685652-45685671 | None:intergenic | 40.0% | |
| CAACACTGTCTACATCAAGA+GGG | + | chr8_4:45685783-45685802 | None:intergenic | 40.0% | |
| GATTTGGCATTTGCACATTC+TGG | - | chr8_4:45686380-45686399 | Msa1327980:intron | 40.0% | |
| TTGTATCAGTCTGGTGAAGG+AGG | + | chr8_4:45685605-45685624 | None:intergenic | 45.0% | |
| GACGTTATAAGGATGGTGAG+GGG | + | chr8_4:45685651-45685670 | None:intergenic | 45.0% | |
| GTGACGTTATAAGGATGGTG+AGG | + | chr8_4:45685653-45685672 | None:intergenic | 45.0% | |
| GCAACACTGTCTACATCAAG+AGG | + | chr8_4:45685784-45685803 | None:intergenic | 45.0% | |
| CGTACTGGAGTTAAGTGGTA+TGG | - | chr8_4:45686695-45686714 | Msa1327980:intron | 45.0% | |
| AATGAGACGGTGATATGGGA+TGG | + | chr8_4:45686737-45686756 | None:intergenic | 45.0% | |
| GCGGAGCCGGAAATAAAATT+TGG | - | chr8_4:45686846-45686865 | Msa1327980:intron | 45.0% | |
| TTGTATCAGTCTGGTGAAGG+AGG | + | chr8_4:45685605-45685624 | None:intergenic | 45.0% | |
| GACGTTATAAGGATGGTGAG+GGG | + | chr8_4:45685651-45685670 | None:intergenic | 45.0% | |
| GTGACGTTATAAGGATGGTG+AGG | + | chr8_4:45685653-45685672 | None:intergenic | 45.0% | |
| GCAACACTGTCTACATCAAG+AGG | + | chr8_4:45685784-45685803 | None:intergenic | 45.0% | |
| CGTACTGGAGTTAAGTGGTA+TGG | - | chr8_4:45686695-45686714 | Msa1327980:intron | 45.0% | |
| AATGAGACGGTGATATGGGA+TGG | + | chr8_4:45686737-45686756 | None:intergenic | 45.0% | |
| GCGGAGCCGGAAATAAAATT+TGG | - | chr8_4:45686846-45686865 | Msa1327980:intron | 45.0% | |
| GACGGTGATATGGGATGGAG+TGG | + | chr8_4:45686732-45686751 | None:intergenic | 55.0% | |
| GCGTGTCTCGTCGTATACAG+CGG | - | chr8_4:45686824-45686843 | Msa1327980:intron | 55.0% | |
| TGTCTCGTCGTATACAGCGG+CGG | - | chr8_4:45686827-45686846 | Msa1327980:intron | 55.0% | |
| GACGGTGATATGGGATGGAG+TGG | + | chr8_4:45686732-45686751 | None:intergenic | 55.0% | |
| GCGTGTCTCGTCGTATACAG+CGG | - | chr8_4:45686824-45686843 | Msa1327980:intron | 55.0% | |
| TGTCTCGTCGTATACAGCGG+CGG | - | chr8_4:45686827-45686846 | Msa1327980:intron | 55.0% | |
| GGATGGTGAGGGGCAGAGTA+AGG | + | chr8_4:45685641-45685660 | None:intergenic | 60.0% | |
| GGATGGTGAGGGGCAGAGTA+AGG | + | chr8_4:45685641-45685660 | None:intergenic | 60.0% | |
| GTCGTATACAGCGGCGGAGC+CGG | - | chr8_4:45686833-45686852 | Msa1327980:intron | 65.0% | |
| GTCGTATACAGCGGCGGAGC+CGG | - | chr8_4:45686833-45686852 | Msa1327980:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 45685339 | 45686898 | 45685339 | ID=Msa1327980;Name=Msa1327980 |
| chr8_4 | mRNA | 45685339 | 45686898 | 45685339 | ID=Msa1327980-mRNA-1;Parent=Msa1327980;Name=Msa1327980-mRNA-1;_AED=0.94;_eAED=0.94;_QI=0|0.25|0|0.8|1|1|5|0|80 |
| chr8_4 | exon | 45686893 | 45686898 | 45686893 | ID=Msa1327980-mRNA-1:exon:12863;Parent=Msa1327980-mRNA-1 |
| chr8_4 | exon | 45685756 | 45685764 | 45685756 | ID=Msa1327980-mRNA-1:exon:12862;Parent=Msa1327980-mRNA-1 |
| chr8_4 | exon | 45685730 | 45685735 | 45685730 | ID=Msa1327980-mRNA-1:exon:12861;Parent=Msa1327980-mRNA-1 |
| chr8_4 | exon | 45685676 | 45685681 | 45685676 | ID=Msa1327980-mRNA-1:exon:12860;Parent=Msa1327980-mRNA-1 |
| chr8_4 | exon | 45685339 | 45685554 | 45685339 | ID=Msa1327980-mRNA-1:exon:12859;Parent=Msa1327980-mRNA-1 |
| chr8_4 | CDS | 45686893 | 45686898 | 45686893 | ID=Msa1327980-mRNA-1:cds;Parent=Msa1327980-mRNA-1 |
| chr8_4 | CDS | 45685756 | 45685764 | 45685756 | ID=Msa1327980-mRNA-1:cds;Parent=Msa1327980-mRNA-1 |
| chr8_4 | CDS | 45685730 | 45685735 | 45685730 | ID=Msa1327980-mRNA-1:cds;Parent=Msa1327980-mRNA-1 |
| chr8_4 | CDS | 45685676 | 45685681 | 45685676 | ID=Msa1327980-mRNA-1:cds;Parent=Msa1327980-mRNA-1 |
| chr8_4 | CDS | 45685339 | 45685554 | 45685339 | ID=Msa1327980-mRNA-1:cds;Parent=Msa1327980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
