AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0003890

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0003890 MtrunA17_Chr1g0156471 97.071 751 18 1 3 753 1 747 0.0 1503
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0003890 AT5G01310.1 58.300 741 248 10 13 749 23 706 0.0 858

Find 202 sgRNAs with CRISPR-Local

Find 427 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTAAAGCCTTCACTTAATT+TGG 0.070308 1_1:-6381235 None:intergenic
CAACTGCATGGATATCTATT+TGG 0.167991 1_1:-6381089 None:intergenic
CGCAGATGCAAAACCCATTT+TGG 0.177970 1_1:+6379735 Msa0003890:intron
TCACGCCTACACTATTATTT+TGG 0.188705 1_1:+6379478 Msa0003890:five_prime_UTR
CATTATATTAGATTGGATTT+TGG 0.192997 1_1:-6381373 None:intergenic
ATACCGAAAGGTGCTCATTT+TGG 0.219069 1_1:-6383516 None:intergenic
CAATCTCCCAACTTCGCTTT+GGG 0.219227 1_1:+6384685 Msa0003890:three_prime_UTR
CAACATGGGTAAAGAACTTC+TGG 0.235682 1_1:-6381815 None:intergenic
AGTATTTGTAGAATGATTTC+TGG 0.242332 1_1:-6383083 None:intergenic
TGCACGCAGTGGGTTTAAAA+TGG 0.254686 1_1:+6383548 Msa0003890:CDS
ACCAACTAAGATTACCAAAA+TGG 0.255360 1_1:-6379749 None:intergenic
TAATCATTGTTCAGACAATT+TGG 0.269486 1_1:-6382920 None:intergenic
CGAGATTCTTGTTCTTGTTC+AGG 0.281395 1_1:-6379560 None:intergenic
GGTCTTTGTGGATTCATATT+AGG 0.285029 1_1:-6382899 None:intergenic
GAGTTGTGATGTGTCACTTT+TGG 0.286916 1_1:-6379522 None:intergenic
TATAATGAAATTCCTGAAAA+AGG 0.291515 1_1:+6381389 Msa0003890:CDS
TGCGTTCCTCTTCTCGCACC+TGG 0.293905 1_1:+6379812 Msa0003890:CDS
TTTCAGGATGCATAGCTATT+AGG 0.300282 1_1:-6383285 None:intergenic
AGTAAGTGCTAATCTATAAA+AGG 0.309609 1_1:+6384573 Msa0003890:exon
GCGCATGCTAATTCCAAGTT+AGG 0.313836 1_1:+6381522 Msa0003890:CDS
CACCCTGACAAAATGTTATT+CGG 0.326546 1_1:-6381257 None:intergenic
TCTCGATCTGTTAAACGATC+TGG 0.327806 1_1:+6381141 Msa0003890:CDS
TTCAGACAATTTGGTCTTTG+TGG 0.329030 1_1:-6382911 None:intergenic
GACTCTACTTCCCAGACTTC+TGG 0.329410 1_1:+6381456 Msa0003890:CDS
CTGCCTTGTCATGGTTGAAT+TGG 0.331343 1_1:-6381656 None:intergenic
TTGGTTGCAGACTCCAGTTC+AGG 0.336397 1_1:-6382767 None:intergenic
TTAAAGCCTTCACTTAATTT+GGG 0.349736 1_1:-6381234 None:intergenic
CATCGACTTGGCAGATGTAC+TGG 0.349970 1_1:+6384935 Msa0003890:three_prime_UTR
GACTTTAAGCGGGGTATGTT+TGG 0.350434 1_1:-6384476 None:intergenic
AAGGTGGATTTCCCGCTTCC+AGG 0.350962 1_1:-6379775 None:intergenic
GGAATTTCATTATATTAGAT+TGG 0.352074 1_1:-6381380 None:intergenic
CCTACTCGAAAACGGGCGTT+TGG 0.353806 1_1:+6384535 Msa0003890:CDS
TCAATCTCCCAACTTCGCTT+TGG 0.354010 1_1:+6384684 Msa0003890:three_prime_UTR
AAATACAAGGGAACCCTTGA+TGG 0.361121 1_1:+6383154 Msa0003890:CDS
AACCTTTCACATGGCTGCTT+CGG 0.364818 1_1:+6381333 Msa0003890:CDS
CTATTGCTTTAGGACACTAT+TGG 0.364954 1_1:+6380928 Msa0003890:intron
ATCACTCGCCTTTATTCAAC+TGG 0.366524 1_1:+6381843 Msa0003890:CDS
AACTGCATGGATATCTATTT+GGG 0.366972 1_1:-6381088 None:intergenic
TGGCAGATGTACTGGGTCAC+TGG 0.369484 1_1:+6384943 Msa0003890:three_prime_UTR
TGACGACAAGCTACTGTCTA+TGG 0.369859 1_1:+6384421 Msa0003890:CDS
CAAAGAAGGCATGGGGATCA+TGG 0.381280 1_1:+6383248 Msa0003890:CDS
CACCTGGGTTCGCGTTTGTC+AGG 0.384918 1_1:+6379828 Msa0003890:CDS
TGGAATTAGCATGCGCTGTT+GGG 0.385424 1_1:-6381515 None:intergenic
AAATCTGCTGTTGAAATAGA+TGG 0.385657 1_1:-6381633 None:intergenic
GCAAACCTCCAGTTGAATAA+AGG 0.388247 1_1:-6381851 None:intergenic
TGATTCCCTCTGCAAAGATA+TGG 0.394356 1_1:+6381485 Msa0003890:CDS
TTGTAAATCTGTAGTTCAGC+TGG 0.394507 1_1:+6384853 Msa0003890:three_prime_UTR
GACATGGGTCACACCTTCTC+TGG 0.401712 1_1:-6382861 None:intergenic
CCTGCTTACCTACTCGAAAA+CGG 0.410998 1_1:+6384527 Msa0003890:CDS
TATCAATTCTTAAATTCTCA+TGG 0.413080 1_1:+6384820 Msa0003890:three_prime_UTR
ATTGATGAGGTATCTATTCA+TGG 0.413174 1_1:+6384380 Msa0003890:CDS
CTGCTTACCTACTCGAAAAC+GGG 0.421330 1_1:+6384528 Msa0003890:CDS
CCAACTAAGATTACCAAAAT+GGG 0.422030 1_1:-6379748 None:intergenic
TGATGCCGCAGGTCCTGAAC+TGG 0.422054 1_1:+6382754 Msa0003890:CDS
TAGTGCAGCTAGAGCATTGA+AGG 0.422729 1_1:+6380987 Msa0003890:CDS
TGCCGCTTTGGATTTAACTA+AGG 0.423436 1_1:-6381775 None:intergenic
GACAGATATAATCTTAAGGC+TGG 0.427335 1_1:-6385044 None:intergenic
TCTTTAGATGCAGTATCAAC+TGG 0.427580 1_1:-6381420 None:intergenic
CGAGAAATACACAGCTTAGC+AGG 0.436953 1_1:-6381123 None:intergenic
ACTAATATGCGACTTTAAGC+GGG 0.448216 1_1:-6384486 None:intergenic
CAGAAGTTCTTTACCCATGT+TGG 0.449612 1_1:+6381816 Msa0003890:CDS
AAATGTAGTTGTCGCATTGA+AGG 0.453847 1_1:-6384260 None:intergenic
GCTTATGCATCACTATTTGA+AGG 0.454340 1_1:+6382971 Msa0003890:CDS
TTTATAGATTAGCACTTACT+TGG 0.457038 1_1:-6384570 None:intergenic
TTGGAATTAGCATGCGCTGT+TGG 0.457695 1_1:-6381516 None:intergenic
AGCACCTTTCGGTATTGAAA+AGG 0.458468 1_1:+6383524 Msa0003890:CDS
ATGACTGAATCAGATTAAAT+CGG 0.459201 1_1:+6385003 Msa0003890:three_prime_UTR
TGCCTTCTTTGTGCTCCCAT+CGG 0.460312 1_1:-6383236 None:intergenic
CTTGTTCAGGATTCTATGAT+CGG 0.464970 1_1:-6379547 None:intergenic
TACGGGTTCTAGAGATGAAA+AGG 0.465029 1_1:+6383192 Msa0003890:CDS
CTCGATCTGTTAAACGATCT+GGG 0.465731 1_1:+6381142 Msa0003890:CDS
TCTTGATGATATTCCGACTC+TGG 0.466974 1_1:+6381605 Msa0003890:CDS
TGTCCAAAATGAGCACCTTT+CGG 0.469516 1_1:+6383513 Msa0003890:CDS
TGCAGAGTACTCAAATAAGA+TGG 0.475710 1_1:+6381701 Msa0003890:CDS
AGCAGATATTATTGTTGAGA+AGG 0.477645 1_1:+6381677 Msa0003890:CDS
ATATATACATAGACTCATCT+TGG 0.478396 1_1:+6384609 Msa0003890:three_prime_UTR
CTTGAGTGAGAATTCTTCAC+TGG 0.479309 1_1:+6383582 Msa0003890:CDS
CAAGTCAACTAGAACAAGTC+TGG 0.479496 1_1:-6381730 None:intergenic
CATAGACAGATATAATCTTA+AGG 0.485281 1_1:-6385048 None:intergenic
ATGCTCTAGCTGCACTACTT+AGG 0.487592 1_1:-6380981 None:intergenic
CGACTGAAACCTGGCGGTGG+AGG 0.488427 1_1:+6382713 Msa0003890:CDS
TCTTCACTGGTATTTCGCCT+TGG 0.488540 1_1:+6383595 Msa0003890:CDS
CTTTAGGACACTATTGGAAA+CGG 0.488697 1_1:+6380934 Msa0003890:intron
CTCGAAAACGGGCGTTTGGT+TGG 0.491923 1_1:+6384539 Msa0003890:CDS
TTCGAGTAGGTAAGCAGGAA+AGG 0.492668 1_1:-6384522 None:intergenic
CAGCTAGAGCATTGAAGGAT+GGG 0.492858 1_1:+6380992 Msa0003890:CDS
GGGGTCATACCACAGTCCTT+AGG 0.494737 1_1:+6384705 Msa0003890:three_prime_UTR
GTAATCTTAGTTGGTGCACC+TGG 0.497340 1_1:+6379757 Msa0003890:CDS
TCTCCTTTGTTCACCAGAGA+AGG 0.497892 1_1:+6382848 Msa0003890:CDS
TTAGTTGGTGCACCTGGAAG+CGG 0.499378 1_1:+6379763 Msa0003890:CDS
TGGTCGAACCACTGAGTCAC+TGG 0.499786 1_1:+6384971 Msa0003890:three_prime_UTR
AAGAGGCTGCAAGGTTCTCC+AGG 0.499868 1_1:+6382946 Msa0003890:CDS
GCACGCAGTGGGTTTAAAAT+GGG 0.503543 1_1:+6383549 Msa0003890:CDS
ACATTTACATGTTATTAGCC+AGG 0.504468 1_1:+6384277 Msa0003890:CDS
TATGCATCCTGAAAAGCATA+AGG 0.504572 1_1:+6383294 Msa0003890:CDS
AGTAAGAGAGATGCTGATCA+TGG 0.505253 1_1:+6383115 Msa0003890:CDS
GTATGACCCCAAAGCGAAGT+TGG 0.507159 1_1:-6384692 None:intergenic
GCGAGTGATGTCTCCAACAT+GGG 0.513703 1_1:-6381829 None:intergenic
TTAGGGTCAAAAGATATAGA+AGG 0.514351 1_1:+6381540 Msa0003890:CDS
GTACTGGGTCACTGGGTCAA+TGG 0.516084 1_1:+6384951 Msa0003890:three_prime_UTR
TATGACCCCAAAGCGAAGTT+GGG 0.517642 1_1:-6384691 None:intergenic
GTGGATTCATATTAGGTCCA+AGG 0.518443 1_1:-6382892 None:intergenic
AAGAGAAACTTGATTGTGAC+AGG 0.518643 1_1:-6381586 None:intergenic
TACTAATATGCGACTTTAAG+CGG 0.518681 1_1:-6384487 None:intergenic
CTGAACAATGATTATGAAAG+AGG 0.518865 1_1:+6382929 Msa0003890:CDS
TAGTTGGTGCACCTGGAAGC+GGG 0.522269 1_1:+6379764 Msa0003890:CDS
GGAAGAGTGTATTCATTGAC+AGG 0.523105 1_1:+6381013 Msa0003890:CDS
AAAGAAGGCATGGGGATCAT+GGG 0.523356 1_1:+6383249 Msa0003890:CDS
ATTTGCAGGCGACTGAAACC+TGG 0.527138 1_1:+6382704 Msa0003890:intron
GCAGAGTACTCAAATAAGAT+GGG 0.527394 1_1:+6381702 Msa0003890:CDS
ACTCGGCTCGGACATCGACT+TGG 0.527452 1_1:+6384923 Msa0003890:three_prime_UTR
CGCATGCTAATTCCAAGTTA+GGG 0.528744 1_1:+6381523 Msa0003890:CDS
GAGAGATGCTGATCATGGAT+TGG 0.529303 1_1:+6383120 Msa0003890:CDS
GCGTTCCTCTTCTCGCACCT+GGG 0.532165 1_1:+6379813 Msa0003890:CDS
TGTAAATCTGTAGTTCAGCT+GGG 0.536640 1_1:+6384854 Msa0003890:three_prime_UTR
ATTTGAAGAATAAGAAGCAC+TGG 0.536704 1_1:+6384315 Msa0003890:CDS
AAAGGAGAAGATGAAGGTAG+AGG 0.537684 1_1:-6382833 None:intergenic
AACCGATGGGAGCACAAAGA+AGG 0.540085 1_1:+6383234 Msa0003890:CDS
GGTCAGACTGATAAATCTGC+TGG 0.543721 1_1:+6381561 Msa0003890:CDS
ACCCATGTCATACATGTCCT+TGG 0.547057 1_1:+6382875 Msa0003890:CDS
ATGGGAGCACAAAGAAGGCA+TGG 0.547623 1_1:+6383239 Msa0003890:CDS
GCATCTAAAGAAAATACCAT+TGG 0.549466 1_1:+6381432 Msa0003890:CDS
TTCGAACATGGACATGGACA+TGG 0.549674 1_1:+6379585 Msa0003890:exon
TCGAGTAGGTAAGCAGGAAA+GGG 0.550559 1_1:-6384521 None:intergenic
ACTATTGGAAACGGTAAAGC+AGG 0.551394 1_1:+6380943 Msa0003890:CDS
GTACATCAAAATGAAAACCT+TGG 0.551599 1_1:+6383019 Msa0003890:CDS
TTACCACGAATATGTGCCTA+AGG 0.553146 1_1:-6384721 None:intergenic
GTTAAACGATCTGGGCATGA+AGG 0.553439 1_1:+6381150 Msa0003890:CDS
TTCATCTCTAGAACCCGTAA+AGG 0.555487 1_1:-6383188 None:intergenic
TGGGAGCACAAAGAAGGCAT+GGG 0.556101 1_1:+6383240 Msa0003890:CDS
GCATTGACACCTCCACCGCC+AGG 0.557019 1_1:-6382722 None:intergenic
AGGTCGTGTCAAAACCATCA+AGG 0.558441 1_1:-6383168 None:intergenic
TCATTGCAAATGCTGCGAAC+TGG 0.559496 1_1:+6381883 Msa0003890:CDS
GGAAACCTTTGTTGTTGTCG+AGG 0.561531 1_1:-6379609 None:intergenic
ATAGTGATGCATAAGCATCC+TGG 0.561975 1_1:-6382964 None:intergenic
TCAGAGCATAAAAGAACCGA+TGG 0.563322 1_1:+6383220 Msa0003890:CDS
GCAGCTAGAGCATTGAAGGA+TGG 0.563714 1_1:+6380991 Msa0003890:CDS
CATAACCTCTTCACAGAAGG+TGG 0.564702 1_1:-6379791 None:intergenic
AGTCCTTAGGCACATATTCG+TGG 0.565139 1_1:+6384718 Msa0003890:three_prime_UTR
GCGAACCCAGGTGCGAGAAG+AGG 0.566181 1_1:-6379818 None:intergenic
CTCGTATTCGAACATGGACA+TGG 0.566252 1_1:+6379579 Msa0003890:exon
AGCTACTGTCTATGGAGTTG+AGG 0.566802 1_1:+6384429 Msa0003890:CDS
GGCAGATGTACTGGGTCACT+GGG 0.569221 1_1:+6384944 Msa0003890:three_prime_UTR
TTTGTCCATATCTTTGCAGA+GGG 0.569456 1_1:-6381490 None:intergenic
TATTCGTGGTAAAATTTGCA+AGG 0.569640 1_1:+6384732 Msa0003890:three_prime_UTR
AATCTCCCAACTTCGCTTTG+GGG 0.570419 1_1:+6384686 Msa0003890:three_prime_UTR
AAAGCAAAGACTCTTTCACC+TGG 0.571665 1_1:+6382794 Msa0003890:CDS
GGCGAGTGATGTCTCCAACA+TGG 0.576042 1_1:-6381830 None:intergenic
AAGGAGAAGATGAAGGTAGA+GGG 0.576283 1_1:-6382832 None:intergenic
TCAGATTAAATCGGACAGCT+CGG 0.579101 1_1:+6385012 Msa0003890:three_prime_UTR
AACATGGGTAAAGAACTTCT+GGG 0.584861 1_1:-6381814 None:intergenic
TAATATCTGCTGCCTTGTCA+TGG 0.588066 1_1:-6381665 None:intergenic
GGGACGACAACAGCATTCCC+AGG 0.588798 1_1:-6382812 None:intergenic
ATCGACTTGGCAGATGTACT+GGG 0.594543 1_1:+6384936 Msa0003890:three_prime_UTR
GTCCAAGGACATGTATGACA+TGG 0.597354 1_1:-6382877 None:intergenic
AACCTGACAAACGCGAACCC+AGG 0.598184 1_1:-6379830 None:intergenic
GACCGAAGCAGCCATGTGAA+AGG 0.599956 1_1:-6381335 None:intergenic
TGACTTGCTTGAAATTTCAG+AGG 0.600463 1_1:+6383318 Msa0003890:CDS
AAGAATCTCGTATTCGAACA+TGG 0.601349 1_1:+6379573 Msa0003890:exon
GTGAACAAAGGAGAAGATGA+AGG 0.601999 1_1:-6382839 None:intergenic
TGCATCAATTGTTAGGAACA+CGG 0.604743 1_1:+6382997 Msa0003890:CDS
TGATTATGAAAGAGGCTGCA+AGG 0.604953 1_1:+6382937 Msa0003890:CDS
ACTCGCCTTTATTCAACTGG+AGG 0.605047 1_1:+6381846 Msa0003890:CDS
CTCAGTAGATATAATTGATG+AGG 0.605508 1_1:+6384367 Msa0003890:CDS
ACAGATATAATCTTAAGGCT+GGG 0.606419 1_1:-6385043 None:intergenic
TTGAAAAGGATGCACGCAGT+GGG 0.608477 1_1:+6383538 Msa0003890:CDS
AGGCGACTGAAACCTGGCGG+TGG 0.612279 1_1:+6382710 Msa0003890:intron
GGTCGTGTCAAAACCATCAA+GGG 0.613737 1_1:-6383167 None:intergenic
GCACACCAAAATAATAGTGT+AGG 0.615060 1_1:-6379483 None:intergenic
ATTTCGCCTTGGATATCACT+CGG 0.615306 1_1:+6383606 Msa0003890:CDS
ATTGAATTGAACTGATGACT+CGG 0.615366 1_1:+6385087 Msa0003890:three_prime_UTR
GAGTTGCCCAAATTAAGTGA+AGG 0.616122 1_1:+6381228 Msa0003890:CDS
ATAGATGGAAATGCCAGAGT+CGG 0.616187 1_1:-6381618 None:intergenic
TTGGTGTTGGCACGGAGTGG+AGG 0.616958 1_1:+6383472 Msa0003890:CDS
ACGCATAACCTCTTCACAGA+AGG 0.623531 1_1:-6379794 None:intergenic
GAAGGTCAAGTACAACTGCA+TGG 0.626377 1_1:-6381101 None:intergenic
AAATACACAGCTTAGCAGGA+AGG 0.627877 1_1:-6381119 None:intergenic
CCACTGGAGAACCTTTCACA+TGG 0.631497 1_1:+6381324 Msa0003890:CDS
GTTCAGGATTCTATGATCGG+AGG 0.631846 1_1:-6379544 None:intergenic
ACACCTTCTCTGGTGAACAA+AGG 0.638418 1_1:-6382851 None:intergenic
GGGCATGAAGGAAATTTGCA+AGG 0.641797 1_1:+6381162 Msa0003890:CDS
CTGGGAAGTAGAGTCTCCAA+TGG 0.644193 1_1:-6381448 None:intergenic
CAGTTCAACCAGTGACTCAG+TGG 0.645276 1_1:-6384979 None:intergenic
GTCCTTAGTTAAATCCAAAG+CGG 0.648704 1_1:+6381773 Msa0003890:CDS
GAAATCCACCTTCTGTGAAG+AGG 0.649778 1_1:+6379786 Msa0003890:CDS
CAGAGTACTCAAATAAGATG+GGG 0.650521 1_1:+6381703 Msa0003890:CDS
AAGCAAAGACTCTTTCACCT+GGG 0.653354 1_1:+6382795 Msa0003890:CDS
TCCAAGGACATGTATGACAT+GGG 0.655879 1_1:-6382876 None:intergenic
ATTGAATGATATGTATCCTA+AGG 0.657093 1_1:+6383351 Msa0003890:CDS
ATTGAAAAGGATGCACGCAG+TGG 0.665548 1_1:+6383537 Msa0003890:CDS
AGACTCCAGTTCAGGACCTG+CGG 0.667051 1_1:-6382759 None:intergenic
TTTCCAATTCAACCATGACA+AGG 0.670098 1_1:+6381653 Msa0003890:CDS
ATGGACCTCGACAACAACAA+AGG 0.670502 1_1:+6379604 Msa0003890:CDS
GGGAGCACAAAGAAGGCATG+GGG 0.672205 1_1:+6383241 Msa0003890:CDS
CAGAGCATAAAAGAACCGAT+GGG 0.673943 1_1:+6383221 Msa0003890:CDS
CCATGTGAAAGGTTCTCCAG+TGG 0.675910 1_1:-6381324 None:intergenic
GAATATGTGCCTAAGGACTG+TGG 0.685856 1_1:-6384714 None:intergenic
CTAATATGCGACTTTAAGCG+GGG 0.687766 1_1:-6384485 None:intergenic
TGCATACCGAGTGATATCCA+AGG 0.698263 1_1:-6383612 None:intergenic
TGCAGGCGACTGAAACCTGG+CGG 0.712644 1_1:+6382707 Msa0003890:intron
CATGAAGGAAATTTGCAAGG+TGG 0.718134 1_1:+6381165 Msa0003890:CDS
GCAATCTTAATAGAGAACAG+CGG 0.774151 1_1:+6381037 Msa0003890:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAGTTTTCAACTTAATTAA+TGG - chr1_1:6379945-6379964 None:intergenic 15.0%
!! ATTACAAAAACATAATAGAA+TGG - chr1_1:6380123-6380142 None:intergenic 15.0%
!!! AAGAAATAAGCTATTTTAAA+AGG + chr1_1:6383860-6383879 Msa0003890:intron 15.0%
!! TACATATATGTTAAAATTTC+TGG + chr1_1:6384215-6384234 Msa0003890:intron 15.0%
!!! TTTTTGCCTTTTCTTTTTAA+TGG + chr1_1:6379909-6379928 Msa0003890:intron 20.0%
!! TTCTGAATCTTTACTAATAT+TGG + chr1_1:6380892-6380911 Msa0003890:intron 20.0%
!! ATTGATACATATCAAAAACT+TGG + chr1_1:6381300-6381319 Msa0003890:CDS 20.0%
!! TTGATACATATCAAAAACTT+GGG + chr1_1:6381301-6381320 Msa0003890:CDS 20.0%
!!! CATTATATTAGATTGGATTT+TGG - chr1_1:6381376-6381395 None:intergenic 20.0%
!! GGAATTTCATTATATTAGAT+TGG - chr1_1:6381383-6381402 None:intergenic 20.0%
!! TATAATGAAATTCCTGAAAA+AGG + chr1_1:6381389-6381408 Msa0003890:CDS 20.0%
!!! GCTAACTTAAATTTGTTTTA+CGG - chr1_1:6383705-6383724 None:intergenic 20.0%
!!! AGGTTGAAAATTATTTTTTG+TGG + chr1_1:6383743-6383762 Msa0003890:intron 20.0%
!!! AATTAATTGATAATTCAGCA+TGG + chr1_1:6383802-6383821 Msa0003890:intron 20.0%
!!! ATTAATTGCTCACTTTTTTT+CGG + chr1_1:6383926-6383945 Msa0003890:intron 20.0%
!!! TCTGTAAACTAAAATTTTCA+TGG + chr1_1:6384151-6384170 Msa0003890:intron 20.0%
!! TATAATGTACACAAAAAAGA+GGG - chr1_1:6384195-6384214 None:intergenic 20.0%
!! ATATAATGTACACAAAAAAG+AGG - chr1_1:6384196-6384215 None:intergenic 20.0%
!! TATCAATTCTTAAATTCTCA+TGG + chr1_1:6384820-6384839 Msa0003890:three_prime_UTR 20.0%
! CAGTTACCATTAAAAAGAAA+AGG - chr1_1:6379918-6379937 None:intergenic 25.0%
! TAAAGTAGTGTTTAATAGAC+AGG - chr1_1:6380488-6380507 None:intergenic 25.0%
! TTTGGAAGTTTGTATTATGA+GGG + chr1_1:6380737-6380756 Msa0003890:intron 25.0%
! AATAAAACTCACAAAAACTG+AGG - chr1_1:6380798-6380817 None:intergenic 25.0%
!!! CAGTTTTTGTGAGTTTTATT+AGG + chr1_1:6380798-6380817 Msa0003890:intron 25.0%
! TACTTTCTTTCTATTGCTTT+AGG + chr1_1:6380918-6380937 Msa0003890:intron 25.0%
! TTAAAGCCTTCACTTAATTT+GGG - chr1_1:6381237-6381256 None:intergenic 25.0%
! GAATTCAAAAATTGTATTGG+AGG - chr1_1:6382274-6382293 None:intergenic 25.0%
! AGGGAATTCAAAAATTGTAT+TGG - chr1_1:6382277-6382296 None:intergenic 25.0%
! TGGAAAAAATAGAGAACTTT+GGG - chr1_1:6382350-6382369 None:intergenic 25.0%
! TGAAAATATATTCTATCCCT+GGG - chr1_1:6382604-6382623 None:intergenic 25.0%
! TCAAATGAAAAAACATTTGC+AGG + chr1_1:6382690-6382709 Msa0003890:intron 25.0%
! TAATCATTGTTCAGACAATT+TGG - chr1_1:6382923-6382942 None:intergenic 25.0%
! AGTATTTGTAGAATGATTTC+TGG - chr1_1:6383086-6383105 None:intergenic 25.0%
! GAAAAAAGCAAGAAATACAA+GGG + chr1_1:6383142-6383161 Msa0003890:CDS 25.0%
! ATTGAATGATATGTATCCTA+AGG + chr1_1:6383351-6383370 Msa0003890:CDS 25.0%
! AAAAAAGATGAATTCACCTT+AGG - chr1_1:6383370-6383389 None:intergenic 25.0%
! ATTCACCAAGTGAAAAAAAT+AGG - chr1_1:6383653-6383672 None:intergenic 25.0%
!! AAACAAATTTAAGTTAGCTG+CGG + chr1_1:6383707-6383726 Msa0003890:intron 25.0%
!! TTTTCAACCTCAATTCAATT+TGG - chr1_1:6383733-6383752 None:intergenic 25.0%
!!! TGAAAATTATTTTTTGTGGC+TGG + chr1_1:6383747-6383766 Msa0003890:intron 25.0%
!!! GAAAATTATTTTTTGTGGCT+GGG + chr1_1:6383748-6383767 Msa0003890:intron 25.0%
!! GGATTTTTCTAATGTATACA+AGG + chr1_1:6383881-6383900 Msa0003890:intron 25.0%
! TTTATAGATTAGCACTTACT+TGG - chr1_1:6384573-6384592 None:intergenic 25.0%
! AGTAAGTGCTAATCTATAAA+AGG + chr1_1:6384573-6384592 Msa0003890:exon 25.0%
! ATATATACATAGACTCATCT+TGG + chr1_1:6384609-6384628 Msa0003890:three_prime_UTR 25.0%
! CTTAAATTCTCATGGAAAAA+AGG + chr1_1:6384828-6384847 Msa0003890:three_prime_UTR 25.0%
!!! GACTAGTTTTTGTTTCTTTT+AGG + chr1_1:6384888-6384907 Msa0003890:three_prime_UTR 25.0%
!!! TTAGGCATAGTTTTAAAACT+CGG + chr1_1:6384906-6384925 Msa0003890:three_prime_UTR 25.0%
! ATGACTGAATCAGATTAAAT+CGG + chr1_1:6385003-6385022 Msa0003890:three_prime_UTR 25.0%
! CATAGACAGATATAATCTTA+AGG - chr1_1:6385051-6385070 None:intergenic 25.0%
ATGAATATAGAGAGAGAATG+AGG - chr1_1:6379647-6379666 None:intergenic 30.0%
ATGAGAATGAGAATGAATCA+TGG + chr1_1:6379673-6379692 Msa0003890:intron 30.0%
CCAACTAAGATTACCAAAAT+GGG - chr1_1:6379751-6379770 None:intergenic 30.0%
ACCAACTAAGATTACCAAAA+TGG - chr1_1:6379752-6379771 None:intergenic 30.0%
! CATTTTATCGAACAGGTAAA+AGG - chr1_1:6379867-6379886 None:intergenic 30.0%
! TTAATCTGTGTTGTTCTCTT+TGG + chr1_1:6380046-6380065 Msa0003890:intron 30.0%
!!! CTTTGGTTTCACTTTTTCAT+TGG + chr1_1:6380063-6380082 Msa0003890:intron 30.0%
GTATGAAAATATCCAAGATC+AGG - chr1_1:6380314-6380333 None:intergenic 30.0%
! TTTTCATACACGCCTATATT+TGG + chr1_1:6380325-6380344 Msa0003890:intron 30.0%
GAAGATCCTATGCAATTTAT+GGG + chr1_1:6380347-6380366 Msa0003890:intron 30.0%
!!! TGTTTTTGGATTGAGGATAA+GGG + chr1_1:6380666-6380685 Msa0003890:intron 30.0%
GTTTGGAAGTTTGTATTATG+AGG + chr1_1:6380736-6380755 Msa0003890:intron 30.0%
CCAAGAGATTATTATAGTTG+CGG - chr1_1:6380829-6380848 None:intergenic 30.0%
!!! GGTCAGATTTTTTAAAGCTT+CGG + chr1_1:6381058-6381077 Msa0003890:CDS 30.0%
!!! GTCAGATTTTTTAAAGCTTC+GGG + chr1_1:6381059-6381078 Msa0003890:CDS 30.0%
!!! TCAGATTTTTTAAAGCTTCG+GGG + chr1_1:6381060-6381079 Msa0003890:CDS 30.0%
AACTGCATGGATATCTATTT+GGG - chr1_1:6381091-6381110 None:intergenic 30.0%
GTTAAAGCCTTCACTTAATT+TGG - chr1_1:6381238-6381257 None:intergenic 30.0%
! TAACCGAATAACATTTTGTC+AGG + chr1_1:6381254-6381273 Msa0003890:CDS 30.0%
! AACCGAATAACATTTTGTCA+GGG + chr1_1:6381255-6381274 Msa0003890:CDS 30.0%
!!! TTAGATTGGATTTTGGAATC+TGG - chr1_1:6381369-6381388 None:intergenic 30.0%
GCATCTAAAGAAAATACCAT+TGG + chr1_1:6381432-6381451 Msa0003890:CDS 30.0%
!!! ATCATTTTTTCCAGAAGTCT+GGG - chr1_1:6381469-6381488 None:intergenic 30.0%
!!! AATCATTTTTTCCAGAAGTC+TGG - chr1_1:6381470-6381489 None:intergenic 30.0%
! TATATCTTTTGACCCTAACT+TGG - chr1_1:6381538-6381557 None:intergenic 30.0%
TTAGGGTCAAAAGATATAGA+AGG + chr1_1:6381540-6381559 Msa0003890:CDS 30.0%
AAATCTGCTGTTGAAATAGA+TGG - chr1_1:6381636-6381655 None:intergenic 30.0%
AGCAGATATTATTGTTGAGA+AGG + chr1_1:6381677-6381696 Msa0003890:CDS 30.0%
! TATGATATGCTGTGTGTTTT+AGG + chr1_1:6382031-6382050 Msa0003890:intron 30.0%
TCAAAAATTGTATTGGAGGA+GGG - chr1_1:6382270-6382289 None:intergenic 30.0%
TTCAAAAATTGTATTGGAGG+AGG - chr1_1:6382271-6382290 None:intergenic 30.0%
! TTTTTGAATTCCCTGAAATG+AGG + chr1_1:6382283-6382302 Msa0003890:intron 30.0%
CATAATTTCTCCTCATTTCA+GGG - chr1_1:6382296-6382315 None:intergenic 30.0%
TCATAATTTCTCCTCATTTC+AGG - chr1_1:6382297-6382316 None:intergenic 30.0%
GTGGAAAAAATAGAGAACTT+TGG - chr1_1:6382351-6382370 None:intergenic 30.0%
ATCACATACGAAAAAGTGAT+AGG - chr1_1:6382516-6382535 None:intergenic 30.0%
!!! TTAGTTTTAACTCATTTCCC+AGG + chr1_1:6382584-6382603 Msa0003890:intron 30.0%
!!! TAGTTTTAACTCATTTCCCA+GGG + chr1_1:6382585-6382604 Msa0003890:intron 30.0%
CTGAAAATATATTCTATCCC+TGG - chr1_1:6382605-6382624 None:intergenic 30.0%
!!! TAAACCTGTCATTTTTCACA+TGG + chr1_1:6382658-6382677 Msa0003890:intron 30.0%
!!! AAGAGTCTTTGCTTTTTCTT+TGG - chr1_1:6382789-6382808 None:intergenic 30.0%
CTGAACAATGATTATGAAAG+AGG + chr1_1:6382929-6382948 Msa0003890:CDS 30.0%
! AAGGTTTTGCATCAATTGTT+AGG + chr1_1:6382990-6383009 Msa0003890:CDS 30.0%
GTACATCAAAATGAAAACCT+TGG + chr1_1:6383019-6383038 Msa0003890:CDS 30.0%
AAACCTTGGAAAAAAGTCTT+TGG + chr1_1:6383033-6383052 Msa0003890:CDS 30.0%
GGAAAAAAGCAAGAAATACA+AGG + chr1_1:6383141-6383160 Msa0003890:CDS 30.0%
ATTTAAAGAGTCAAGCATGT+CGG - chr1_1:6383406-6383425 None:intergenic 30.0%
!!! ACAAAAACATGTTTTGGTGT+TGG + chr1_1:6383459-6383478 Msa0003890:CDS 30.0%
!!! CAAGACCTATTTTTTTCACT+TGG + chr1_1:6383645-6383664 Msa0003890:intron 30.0%
AATTATCTGTTTGCATGTGT+TGG + chr1_1:6383954-6383973 Msa0003890:intron 30.0%
! ACGATCGAGTTATTTCATAT+TGG - chr1_1:6383985-6384004 None:intergenic 30.0%
ACATTTACATGTTATTAGCC+AGG + chr1_1:6384277-6384296 Msa0003890:CDS 30.0%
! ATTTGAAGAATAAGAAGCAC+TGG + chr1_1:6384315-6384334 Msa0003890:CDS 30.0%
CTCAGTAGATATAATTGATG+AGG + chr1_1:6384367-6384386 Msa0003890:CDS 30.0%
! ATTGATGAGGTATCTATTCA+TGG + chr1_1:6384380-6384399 Msa0003890:CDS 30.0%
TACTAATATGCGACTTTAAG+CGG - chr1_1:6384490-6384509 None:intergenic 30.0%
TATTCGTGGTAAAATTTGCA+AGG + chr1_1:6384732-6384751 Msa0003890:three_prime_UTR 30.0%
ACAGATATAATCTTAAGGCT+GGG - chr1_1:6385046-6385065 None:intergenic 30.0%
ATTGAATTGAACTGATGACT+CGG + chr1_1:6385087-6385106 Msa0003890:three_prime_UTR 30.0%
! TCACGCCTACACTATTATTT+TGG + chr1_1:6379478-6379497 Msa0003890:five_prime_UTR 35.0%
GCACACCAAAATAATAGTGT+AGG - chr1_1:6379486-6379505 None:intergenic 35.0%
!!! AGTTGTGATGTGTCACTTTT+GGG - chr1_1:6379524-6379543 None:intergenic 35.0%
CTTGTTCAGGATTCTATGAT+CGG - chr1_1:6379550-6379569 None:intergenic 35.0%
AAGAATCTCGTATTCGAACA+TGG + chr1_1:6379573-6379592 Msa0003890:exon 35.0%
AGAATGAGGAAGGTTATAGA+AGG - chr1_1:6379633-6379652 None:intergenic 35.0%
ATATAGAGAGAGAATGAGGA+AGG - chr1_1:6379643-6379662 None:intergenic 35.0%
!! CCCATTTTGGTAATCTTAGT+TGG + chr1_1:6379748-6379767 Msa0003890:CDS 35.0%
GCATAGGATCTTCCAAATAT+AGG - chr1_1:6380340-6380359 None:intergenic 35.0%
GGAAGATCCTATGCAATTTA+TGG + chr1_1:6380346-6380365 Msa0003890:intron 35.0%
AGAACACCCATAAATTGCAT+AGG - chr1_1:6380356-6380375 None:intergenic 35.0%
!! TTCTATTTCTAGTCTGCTTG+AGG + chr1_1:6380634-6380653 Msa0003890:intron 35.0%
!! TCTATTTCTAGTCTGCTTGA+GGG + chr1_1:6380635-6380654 Msa0003890:intron 35.0%
!!! TTCTAGGTGTTTTTGGATTG+AGG + chr1_1:6380659-6380678 Msa0003890:intron 35.0%
!!! GTGTTTTTGGATTGAGGATA+AGG + chr1_1:6380665-6380684 Msa0003890:intron 35.0%
GAAGTTTGTATTATGAGGGA+AGG + chr1_1:6380741-6380760 Msa0003890:intron 35.0%
CCGCAACTATAATAATCTCT+TGG + chr1_1:6380826-6380845 Msa0003890:intron 35.0%
!! CTATTGCTTTAGGACACTAT+TGG + chr1_1:6380928-6380947 Msa0003890:intron 35.0%
!! CTTTAGGACACTATTGGAAA+CGG + chr1_1:6380934-6380953 Msa0003890:intron 35.0%
GCAATCTTAATAGAGAACAG+CGG + chr1_1:6381037-6381056 Msa0003890:CDS 35.0%
CAACTGCATGGATATCTATT+TGG - chr1_1:6381092-6381111 None:intergenic 35.0%
CACCCTGACAAAATGTTATT+CGG - chr1_1:6381260-6381279 None:intergenic 35.0%
GAAATTCCTGAAAAAGGTAG+AGG + chr1_1:6381395-6381414 Msa0003890:CDS 35.0%
TCTTTAGATGCAGTATCAAC+TGG - chr1_1:6381423-6381442 None:intergenic 35.0%
TTTGTCCATATCTTTGCAGA+GGG - chr1_1:6381493-6381512 None:intergenic 35.0%
! TTTTGTCCATATCTTTGCAG+AGG - chr1_1:6381494-6381513 None:intergenic 35.0%
AAGAGAAACTTGATTGTGAC+AGG - chr1_1:6381589-6381608 None:intergenic 35.0%
TTTCCAATTCAACCATGACA+AGG + chr1_1:6381653-6381672 Msa0003890:CDS 35.0%
! TGCAGAGTACTCAAATAAGA+TGG + chr1_1:6381701-6381720 Msa0003890:CDS 35.0%
! GCAGAGTACTCAAATAAGAT+GGG + chr1_1:6381702-6381721 Msa0003890:CDS 35.0%
! CAGAGTACTCAAATAAGATG+GGG + chr1_1:6381703-6381722 Msa0003890:CDS 35.0%
GTCCTTAGTTAAATCCAAAG+CGG + chr1_1:6381773-6381792 Msa0003890:CDS 35.0%
AACATGGGTAAAGAACTTCT+GGG - chr1_1:6381817-6381836 None:intergenic 35.0%
CTAACTATCTACTTCAGCAT+TGG - chr1_1:6381954-6381973 None:intergenic 35.0%
!!! TGTGTGTTTTAGGCTTTGTT+TGG + chr1_1:6382041-6382060 Msa0003890:intron 35.0%
!!! GTGTGTTTTAGGCTTTGTTT+GGG + chr1_1:6382042-6382061 Msa0003890:intron 35.0%
TTTGGGTGGTAGGAAATATA+GGG + chr1_1:6382087-6382106 Msa0003890:intron 35.0%
! AAAATAGAGAACTTTGGGAG+AGG - chr1_1:6382345-6382364 None:intergenic 35.0%
!! GAGGGTTTTTGAAAAAAGGA+AGG - chr1_1:6382379-6382398 None:intergenic 35.0%
TTAACAGAAACCTCCTATTG+TGG - chr1_1:6382458-6382477 None:intergenic 35.0%
TGCGATCAAATTCTAGACTA+AGG + chr1_1:6382490-6382509 Msa0003890:intron 35.0%
CAATAAGCAAGCTTAAGCAT+TGG - chr1_1:6382552-6382571 None:intergenic 35.0%
!! TCATTTTTCACATGGTCTCT+TGG + chr1_1:6382666-6382685 Msa0003890:intron 35.0%
GGTCTTTGTGGATTCATATT+AGG - chr1_1:6382902-6382921 None:intergenic 35.0%
! TTCAGACAATTTGGTCTTTG+TGG - chr1_1:6382914-6382933 None:intergenic 35.0%
GCTTATGCATCACTATTTGA+AGG + chr1_1:6382971-6382990 Msa0003890:CDS 35.0%
TGCATCAATTGTTAGGAACA+CGG + chr1_1:6382997-6383016 Msa0003890:CDS 35.0%
!!! ACTCCAAAGACTTTTTTCCA+AGG - chr1_1:6383039-6383058 None:intergenic 35.0%
TTTCAGGATGCATAGCTATT+AGG - chr1_1:6383288-6383307 None:intergenic 35.0%
! TATGCATCCTGAAAAGCATA+AGG + chr1_1:6383294-6383313 Msa0003890:CDS 35.0%
! AAGTCATCCTTATGCTTTTC+AGG - chr1_1:6383304-6383323 None:intergenic 35.0%
!! TGACTTGCTTGAAATTTCAG+AGG + chr1_1:6383318-6383337 Msa0003890:CDS 35.0%
TGAATTTCTCTATGCTTTGC+AGG + chr1_1:6383435-6383454 Msa0003890:intron 35.0%
TCAGCATGGAAACAGTTAAA+AGG + chr1_1:6383816-6383835 Msa0003890:intron 35.0%
GTACTATTGTTATGCTGAGA+AGG + chr1_1:6384003-6384022 Msa0003890:intron 35.0%
TCTACAAGTAGCTTAAGTCA+TGG + chr1_1:6384030-6384049 Msa0003890:intron 35.0%
! ATTTTTATGGGCATGCTTCT+AGG + chr1_1:6384067-6384086 Msa0003890:intron 35.0%
! TAAGGTTTGGTTGTTGTTGT+TGG + chr1_1:6384110-6384129 Msa0003890:intron 35.0%
ACAGATAACACCTAAAAGCA+TGG - chr1_1:6384136-6384155 None:intergenic 35.0%
AAATGTAGTTGTCGCATTGA+AGG - chr1_1:6384263-6384282 None:intergenic 35.0%
!! AATGTTTTGAGTCAAAGTCC+TGG - chr1_1:6384298-6384317 None:intergenic 35.0%
ACTAATATGCGACTTTAAGC+GGG - chr1_1:6384489-6384508 None:intergenic 35.0%
!!! GCTAATTGTTTTTGAACTGC+TGG + chr1_1:6384661-6384680 Msa0003890:three_prime_UTR 35.0%
TTGTAAATCTGTAGTTCAGC+TGG + chr1_1:6384853-6384872 Msa0003890:three_prime_UTR 35.0%
TGTAAATCTGTAGTTCAGCT+GGG + chr1_1:6384854-6384873 Msa0003890:three_prime_UTR 35.0%
!!! CATAGTTTTAAAACTCGGCT+CGG + chr1_1:6384911-6384930 Msa0003890:three_prime_UTR 35.0%
GACAGATATAATCTTAAGGC+TGG - chr1_1:6385047-6385066 None:intergenic 35.0%
!!! TTTTGGGGTTCAAGACAACA+TGG - chr1_1:6379508-6379527 None:intergenic 40.0%
!!! GTTGTGATGTGTCACTTTTG+GGG - chr1_1:6379523-6379542 None:intergenic 40.0%
!!! GAGTTGTGATGTGTCACTTT+TGG - chr1_1:6379525-6379544 None:intergenic 40.0%
CGAGATTCTTGTTCTTGTTC+AGG - chr1_1:6379563-6379582 None:intergenic 40.0%
ATCGAACAGGTAAAAGGCAA+AGG - chr1_1:6379861-6379880 None:intergenic 40.0%
!! AGTGAGGCATTTTATCGAAC+AGG - chr1_1:6379874-6379893 None:intergenic 40.0%
TGTTCGATAAAATGCCTCAC+TGG + chr1_1:6379873-6379892 Msa0003890:intron 40.0%
GTTCGATAAAATGCCTCACT+GGG + chr1_1:6379874-6379893 Msa0003890:intron 40.0%
GCATATAACATCGTGTGTTG+CGG + chr1_1:6380018-6380037 Msa0003890:intron 40.0%
CATATAACATCGTGTGTTGC+GGG + chr1_1:6380019-6380038 Msa0003890:intron 40.0%
ATAGCCCTGTGTTGAATCAA+GGG + chr1_1:6380239-6380258 Msa0003890:intron 40.0%
AGATCAGGATGAAGATCGAA+AGG - chr1_1:6380299-6380318 None:intergenic 40.0%
TTCGATCTTCATCCTGATCT+TGG + chr1_1:6380299-6380318 Msa0003890:intron 40.0%
!!! TTCTAGTTTTAGTCTGCACG+AGG + chr1_1:6380372-6380391 Msa0003890:intron 40.0%
!!! TCTAGTTTTAGTCTGCACGA+GGG + chr1_1:6380373-6380392 Msa0003890:intron 40.0%
! TAGTGTGTTTGATAACCCTG+AGG + chr1_1:6380506-6380525 Msa0003890:intron 40.0%
ATAACCCTGAGGTGAATCAA+GGG + chr1_1:6380517-6380536 Msa0003890:intron 40.0%
AGAACACGCATTAACTGCTT+AGG - chr1_1:6380618-6380637 None:intergenic 40.0%
ATTCTTCATTCCCCACTTAG+TGG + chr1_1:6380690-6380709 Msa0003890:intron 40.0%
TTCTTCATTCCCCACTTAGT+GGG + chr1_1:6380691-6380710 Msa0003890:intron 40.0%
!! GCTTGGTTCTTGTTGTTGTT+TGG + chr1_1:6380719-6380738 Msa0003890:intron 40.0%
ATTATGAGGGAAGGAAAGTG+AGG + chr1_1:6380750-6380769 Msa0003890:intron 40.0%
AATCTACCTGCTTTGATTGC+AGG + chr1_1:6380863-6380882 Msa0003890:intron 40.0%
ACTATTGGAAACGGTAAAGC+AGG + chr1_1:6380943-6380962 Msa0003890:CDS 40.0%
! GGAAGAGTGTATTCATTGAC+AGG + chr1_1:6381013-6381032 Msa0003890:CDS 40.0%
AAATACACAGCTTAGCAGGA+AGG - chr1_1:6381122-6381141 None:intergenic 40.0%
TCTCGATCTGTTAAACGATC+TGG + chr1_1:6381141-6381160 Msa0003890:CDS 40.0%
CTCGATCTGTTAAACGATCT+GGG + chr1_1:6381142-6381161 Msa0003890:CDS 40.0%
CATGAAGGAAATTTGCAAGG+TGG + chr1_1:6381165-6381184 Msa0003890:CDS 40.0%
GAGTTGCCCAAATTAAGTGA+AGG + chr1_1:6381228-6381247 Msa0003890:CDS 40.0%
ATATCAAAAACTTGGGCCAC+TGG + chr1_1:6381308-6381327 Msa0003890:CDS 40.0%
TGATTCCCTCTGCAAAGATA+TGG + chr1_1:6381485-6381504 Msa0003890:CDS 40.0%
CGCATGCTAATTCCAAGTTA+GGG + chr1_1:6381523-6381542 Msa0003890:CDS 40.0%
! TCTTGATGATATTCCGACTC+TGG + chr1_1:6381605-6381624 Msa0003890:CDS 40.0%
ATAGATGGAAATGCCAGAGT+CGG - chr1_1:6381621-6381640 None:intergenic 40.0%
TAATATCTGCTGCCTTGTCA+TGG - chr1_1:6381668-6381687 None:intergenic 40.0%
CAAGTCAACTAGAACAAGTC+TGG - chr1_1:6381733-6381752 None:intergenic 40.0%
!! TGCCGCTTTGGATTTAACTA+AGG - chr1_1:6381778-6381797 None:intergenic 40.0%
CAACATGGGTAAAGAACTTC+TGG - chr1_1:6381818-6381837 None:intergenic 40.0%
CAGAAGTTCTTTACCCATGT+TGG + chr1_1:6381816-6381835 Msa0003890:CDS 40.0%
ATCACTCGCCTTTATTCAAC+TGG + chr1_1:6381843-6381862 Msa0003890:CDS 40.0%
GCAAACCTCCAGTTGAATAA+AGG - chr1_1:6381854-6381873 None:intergenic 40.0%
TTCACACATGCAGTTCTTTG+AGG - chr1_1:6381997-6382016 None:intergenic 40.0%
!! TTAGGCTTTGTTTGGGAGTT+TGG + chr1_1:6382049-6382068 Msa0003890:intron 40.0%
CTTTGGGTGGTAGGAAATAT+AGG + chr1_1:6382086-6382105 Msa0003890:intron 40.0%
! ATTGTATTGGAGGAGGGTTT+TGG - chr1_1:6382264-6382283 None:intergenic 40.0%
TGAAAAAAGGAAGGAGCAAG+TGG - chr1_1:6382370-6382389 None:intergenic 40.0%
!! AGGGGAGGGTTTTTGAAAAA+AGG - chr1_1:6382383-6382402 None:intergenic 40.0%
!! TAAGGCTTTGTTTGCGAGTT+TGG - chr1_1:6382406-6382425 None:intergenic 40.0%
AAACTCGCAAACAAAGCCTT+AGG + chr1_1:6382405-6382424 Msa0003890:intron 40.0%
TAGCTGTCTGATACCACAAT+AGG + chr1_1:6382442-6382461 Msa0003890:intron 40.0%
GAGACCATGTGAAAAATGAC+AGG - chr1_1:6382665-6382684 None:intergenic 40.0%
AAAGCAAAGACTCTTTCACC+TGG + chr1_1:6382794-6382813 Msa0003890:CDS 40.0%
AAGCAAAGACTCTTTCACCT+GGG + chr1_1:6382795-6382814 Msa0003890:CDS 40.0%
AAGGAGAAGATGAAGGTAGA+GGG - chr1_1:6382835-6382854 None:intergenic 40.0%
AAAGGAGAAGATGAAGGTAG+AGG - chr1_1:6382836-6382855 None:intergenic 40.0%
GTGAACAAAGGAGAAGATGA+AGG - chr1_1:6382842-6382861 None:intergenic 40.0%
TCCAAGGACATGTATGACAT+GGG - chr1_1:6382879-6382898 None:intergenic 40.0%
GTGGATTCATATTAGGTCCA+AGG - chr1_1:6382895-6382914 None:intergenic 40.0%
TGATTATGAAAGAGGCTGCA+AGG + chr1_1:6382937-6382956 Msa0003890:CDS 40.0%
ATAGTGATGCATAAGCATCC+TGG - chr1_1:6382967-6382986 None:intergenic 40.0%
AGTAAGAGAGATGCTGATCA+TGG + chr1_1:6383115-6383134 Msa0003890:CDS 40.0%
AAATACAAGGGAACCCTTGA+TGG + chr1_1:6383154-6383173 Msa0003890:CDS 40.0%
!!! TGGTTTTGACACGACCTTTA+CGG + chr1_1:6383174-6383193 Msa0003890:CDS 40.0%
!! TTCATCTCTAGAACCCGTAA+AGG - chr1_1:6383191-6383210 None:intergenic 40.0%
!! TACGGGTTCTAGAGATGAAA+AGG + chr1_1:6383192-6383211 Msa0003890:CDS 40.0%
TCAGAGCATAAAAGAACCGA+TGG + chr1_1:6383220-6383239 Msa0003890:CDS 40.0%
CAGAGCATAAAAGAACCGAT+GGG + chr1_1:6383221-6383240 Msa0003890:CDS 40.0%
! GCAGGCACAAAAACATGTTT+TGG + chr1_1:6383453-6383472 Msa0003890:intron 40.0%
!!! AACATGTTTTGGTGTTGGCA+CGG + chr1_1:6383464-6383483 Msa0003890:CDS 40.0%
TGTCCAAAATGAGCACCTTT+CGG + chr1_1:6383513-6383532 Msa0003890:CDS 40.0%
!!! ATACCGAAAGGTGCTCATTT+TGG - chr1_1:6383519-6383538 None:intergenic 40.0%
! AGCACCTTTCGGTATTGAAA+AGG + chr1_1:6383524-6383543 Msa0003890:CDS 40.0%
! GCATCCTTTTCAATACCGAA+AGG - chr1_1:6383531-6383550 None:intergenic 40.0%
CTTGAGTGAGAATTCTTCAC+TGG + chr1_1:6383582-6383601 Msa0003890:CDS 40.0%
ATTTCGCCTTGGATATCACT+CGG + chr1_1:6383606-6383625 Msa0003890:CDS 40.0%
AATGATCCTTAGAGTGTGCA+AGG - chr1_1:6383909-6383928 None:intergenic 40.0%
AAACCTTATCCCACTAAGTG+GGG - chr1_1:6384098-6384117 None:intergenic 40.0%
CAAACCTTATCCCACTAAGT+GGG - chr1_1:6384099-6384118 None:intergenic 40.0%
!! TTGTTGTTGGCCATGCTTTT+AGG + chr1_1:6384123-6384142 Msa0003890:intron 40.0%
CTAATATGCGACTTTAAGCG+GGG - chr1_1:6384488-6384507 None:intergenic 40.0%
TTACCACGAATATGTGCCTA+AGG - chr1_1:6384724-6384743 None:intergenic 40.0%
TCAGATTAAATCGGACAGCT+CGG + chr1_1:6385012-6385031 Msa0003890:three_prime_UTR 40.0%
GTTCAGGATTCTATGATCGG+AGG - chr1_1:6379547-6379566 None:intergenic 45.0%
CTCGTATTCGAACATGGACA+TGG + chr1_1:6379579-6379598 Msa0003890:exon 45.0%
TTCGAACATGGACATGGACA+TGG + chr1_1:6379585-6379604 Msa0003890:exon 45.0%
ATGGACCTCGACAACAACAA+AGG + chr1_1:6379604-6379623 Msa0003890:CDS 45.0%
!! GGAAACCTTTGTTGTTGTCG+AGG - chr1_1:6379612-6379631 None:intergenic 45.0%
! CGCAGATGCAAAACCCATTT+TGG + chr1_1:6379735-6379754 Msa0003890:intron 45.0%
! GTAATCTTAGTTGGTGCACC+TGG + chr1_1:6379757-6379776 Msa0003890:CDS 45.0%
GAAATCCACCTTCTGTGAAG+AGG + chr1_1:6379786-6379805 Msa0003890:CDS 45.0%
CATAACCTCTTCACAGAAGG+TGG - chr1_1:6379794-6379813 None:intergenic 45.0%
ACGCATAACCTCTTCACAGA+AGG - chr1_1:6379797-6379816 None:intergenic 45.0%
AAGTACAGTGAAACCCAGTG+AGG - chr1_1:6379890-6379909 None:intergenic 45.0%
GATAGCCCTGTGTTGAATCA+AGG + chr1_1:6380238-6380257 Msa0003890:intron 45.0%
CACACCCTTGATTCAACACA+GGG - chr1_1:6380246-6380265 None:intergenic 45.0%
ACACACCCTTGATTCAACAC+AGG - chr1_1:6380247-6380266 None:intergenic 45.0%
GATAACCCTGAGGTGAATCA+AGG + chr1_1:6380516-6380535 Msa0003890:intron 45.0%
TAACCCTGAGGTGAATCAAG+GGG + chr1_1:6380518-6380537 Msa0003890:intron 45.0%
! TGAGGGCTTCTAGGTGTTTT+TGG + chr1_1:6380652-6380671 Msa0003890:intron 45.0%
ATTCCCCACTTAGTGGGAAA+AGG + chr1_1:6380697-6380716 Msa0003890:intron 45.0%
! AAGCCTTTTCCCACTAAGTG+GGG - chr1_1:6380703-6380722 None:intergenic 45.0%
! CAAGCCTTTTCCCACTAAGT+GGG - chr1_1:6380704-6380723 None:intergenic 45.0%
ATGCTCTAGCTGCACTACTT+AGG - chr1_1:6380984-6381003 None:intergenic 45.0%
!! TAGTGCAGCTAGAGCATTGA+AGG + chr1_1:6380987-6381006 Msa0003890:CDS 45.0%
!! CAGCTAGAGCATTGAAGGAT+GGG + chr1_1:6380992-6381011 Msa0003890:CDS 45.0%
GAAGGTCAAGTACAACTGCA+TGG - chr1_1:6381104-6381123 None:intergenic 45.0%
CGAGAAATACACAGCTTAGC+AGG - chr1_1:6381126-6381145 None:intergenic 45.0%
GTTAAACGATCTGGGCATGA+AGG + chr1_1:6381150-6381169 Msa0003890:CDS 45.0%
GGGCATGAAGGAAATTTGCA+AGG + chr1_1:6381162-6381181 Msa0003890:CDS 45.0%
AACCTTTCACATGGCTGCTT+CGG + chr1_1:6381333-6381352 Msa0003890:CDS 45.0%
! CTGGTACCTCTACCTTTTTC+AGG - chr1_1:6381404-6381423 None:intergenic 45.0%
TGGAATTAGCATGCGCTGTT+GGG - chr1_1:6381518-6381537 None:intergenic 45.0%
TTGGAATTAGCATGCGCTGT+TGG - chr1_1:6381519-6381538 None:intergenic 45.0%
GCGCATGCTAATTCCAAGTT+AGG + chr1_1:6381522-6381541 Msa0003890:CDS 45.0%
GGTCAGACTGATAAATCTGC+TGG + chr1_1:6381561-6381580 Msa0003890:CDS 45.0%
CTGCCTTGTCATGGTTGAAT+TGG - chr1_1:6381659-6381678 None:intergenic 45.0%
ACTCGCCTTTATTCAACTGG+AGG + chr1_1:6381846-6381865 Msa0003890:CDS 45.0%
TCATTGCAAATGCTGCGAAC+TGG + chr1_1:6381883-6381902 Msa0003890:CDS 45.0%
!! GCTTTGTTTGGGAGTTTGGA+GGG + chr1_1:6382053-6382072 Msa0003890:intron 45.0%
! CTTTGTTTGGGAGTTTGGAG+GGG + chr1_1:6382054-6382073 Msa0003890:intron 45.0%
!!! GGGTTTTGGAAGGTTTTGGA+GGG - chr1_1:6382250-6382269 None:intergenic 45.0%
!!! AGGGTTTTGGAAGGTTTTGG+AGG - chr1_1:6382251-6382270 None:intergenic 45.0%
!!! AGGAGGGTTTTGGAAGGTTT+TGG - chr1_1:6382254-6382273 None:intergenic 45.0%
!!! TATTGGAGGAGGGTTTTGGA+AGG - chr1_1:6382260-6382279 None:intergenic 45.0%
! TAGAGAACTTTGGGAGAGGA+GGG - chr1_1:6382341-6382360 None:intergenic 45.0%
! ATAGAGAACTTTGGGAGAGG+AGG - chr1_1:6382342-6382361 None:intergenic 45.0%
! CTTTGTTTGCGAGTTTGGAG+GGG - chr1_1:6382401-6382420 None:intergenic 45.0%
!! GCTTTGTTTGCGAGTTTGGA+GGG - chr1_1:6382402-6382421 None:intergenic 45.0%
TAGCGATCGAGGAAATCCTA+AGG - chr1_1:6382424-6382443 None:intergenic 45.0%
CTGTCTGATACCACAATAGG+AGG + chr1_1:6382445-6382464 Msa0003890:intron 45.0%
! GCATCAATTTTTGATGCCGC+AGG + chr1_1:6382743-6382762 Msa0003890:CDS 45.0%
TCTCCTTTGTTCACCAGAGA+AGG + chr1_1:6382848-6382867 Msa0003890:CDS 45.0%
ACACCTTCTCTGGTGAACAA+AGG - chr1_1:6382854-6382873 None:intergenic 45.0%
ACCCATGTCATACATGTCCT+TGG + chr1_1:6382875-6382894 Msa0003890:CDS 45.0%
GTCCAAGGACATGTATGACA+TGG - chr1_1:6382880-6382899 None:intergenic 45.0%
GAGAGATGCTGATCATGGAT+TGG + chr1_1:6383120-6383139 Msa0003890:CDS 45.0%
GGTCGTGTCAAAACCATCAA+GGG - chr1_1:6383170-6383189 None:intergenic 45.0%
AGGTCGTGTCAAAACCATCA+AGG - chr1_1:6383171-6383190 None:intergenic 45.0%
!! GGTTTTGACACGACCTTTAC+GGG + chr1_1:6383175-6383194 Msa0003890:CDS 45.0%
! AAAGAAGGCATGGGGATCAT+GGG + chr1_1:6383249-6383268 Msa0003890:CDS 45.0%
! GCTCATTTTGGACATCTGAC+AGG - chr1_1:6383507-6383526 None:intergenic 45.0%
ATTGAAAAGGATGCACGCAG+TGG + chr1_1:6383537-6383556 Msa0003890:CDS 45.0%
TTGAAAAGGATGCACGCAGT+GGG + chr1_1:6383538-6383557 Msa0003890:CDS 45.0%
! TGCACGCAGTGGGTTTAAAA+TGG + chr1_1:6383548-6383567 Msa0003890:CDS 45.0%
! GCACGCAGTGGGTTTAAAAT+GGG + chr1_1:6383549-6383568 Msa0003890:CDS 45.0%
TCTTCACTGGTATTTCGCCT+TGG + chr1_1:6383595-6383614 Msa0003890:CDS 45.0%
TGCATACCGAGTGATATCCA+AGG - chr1_1:6383615-6383634 None:intergenic 45.0%
! AAGGTACCTTGCACACTCTA+AGG + chr1_1:6383900-6383919 Msa0003890:intron 45.0%
CCAAACCTTATCCCACTAAG+TGG - chr1_1:6384100-6384119 None:intergenic 45.0%
CCACTTAGTGGGATAAGGTT+TGG + chr1_1:6384097-6384116 Msa0003890:intron 45.0%
TGACGACAAGCTACTGTCTA+TGG + chr1_1:6384421-6384440 Msa0003890:CDS 45.0%
AGCTACTGTCTATGGAGTTG+AGG + chr1_1:6384429-6384448 Msa0003890:CDS 45.0%
GACTTTAAGCGGGGTATGTT+TGG - chr1_1:6384479-6384498 None:intergenic 45.0%
TCGAGTAGGTAAGCAGGAAA+GGG - chr1_1:6384524-6384543 None:intergenic 45.0%
TTCGAGTAGGTAAGCAGGAA+AGG - chr1_1:6384525-6384544 None:intergenic 45.0%
CCTGCTTACCTACTCGAAAA+CGG + chr1_1:6384527-6384546 Msa0003890:CDS 45.0%
CTGCTTACCTACTCGAAAAC+GGG + chr1_1:6384528-6384547 Msa0003890:CDS 45.0%
TCAATCTCCCAACTTCGCTT+TGG + chr1_1:6384684-6384703 Msa0003890:three_prime_UTR 45.0%
CAATCTCCCAACTTCGCTTT+GGG + chr1_1:6384685-6384704 Msa0003890:three_prime_UTR 45.0%
AATCTCCCAACTTCGCTTTG+GGG + chr1_1:6384686-6384705 Msa0003890:three_prime_UTR 45.0%
TATGACCCCAAAGCGAAGTT+GGG - chr1_1:6384694-6384713 None:intergenic 45.0%
GAATATGTGCCTAAGGACTG+TGG - chr1_1:6384717-6384736 None:intergenic 45.0%
AGTCCTTAGGCACATATTCG+TGG + chr1_1:6384718-6384737 Msa0003890:three_prime_UTR 45.0%
!! ATCGACTTGGCAGATGTACT+GGG + chr1_1:6384936-6384955 Msa0003890:three_prime_UTR 45.0%
!!! TTTTTTTTTAATAATGTTTT+CGG + chr1_1:6382631-6382650 Msa0003890:intron 5.0%
!!! TAAGTTTTTTTTAATTTTTA+TGG + chr1_1:6384054-6384073 Msa0003890:intron 5.0%
!!! AAGTTTTTTTTAATTTTTAT+GGG + chr1_1:6384055-6384074 Msa0003890:intron 5.0%
! TTAGTTGGTGCACCTGGAAG+CGG + chr1_1:6379763-6379782 Msa0003890:CDS 50.0%
TTAGTCTGCACGAGGGCTTT+AGG + chr1_1:6380380-6380399 Msa0003890:intron 50.0%
ACACCCCTTGATTCACCTCA+GGG - chr1_1:6380524-6380543 None:intergenic 50.0%
TAGTCTGCTTGAGGGCTTCT+AGG + chr1_1:6380643-6380662 Msa0003890:intron 50.0%
! CCAAGCCTTTTCCCACTAAG+TGG - chr1_1:6380705-6380724 None:intergenic 50.0%
CCACTTAGTGGGAAAAGGCT+TGG + chr1_1:6380702-6380721 Msa0003890:intron 50.0%
CTACCTGCTTTGATTGCAGG+AGG + chr1_1:6380866-6380885 Msa0003890:intron 50.0%
!! GCAGCTAGAGCATTGAAGGA+TGG + chr1_1:6380991-6381010 Msa0003890:CDS 50.0%
CCATGTGAAAGGTTCTCCAG+TGG - chr1_1:6381327-6381346 None:intergenic 50.0%
CCACTGGAGAACCTTTCACA+TGG + chr1_1:6381324-6381343 Msa0003890:CDS 50.0%
CTGGGAAGTAGAGTCTCCAA+TGG - chr1_1:6381451-6381470 None:intergenic 50.0%
GACTCTACTTCCCAGACTTC+TGG + chr1_1:6381456-6381475 Msa0003890:CDS 50.0%
!! GACGTTCTTTTCTGCCGCTT+TGG - chr1_1:6381790-6381809 None:intergenic 50.0%
GCGAGTGATGTCTCCAACAT+GGG - chr1_1:6381832-6381851 None:intergenic 50.0%
!! GGCTTTGTTTGGGAGTTTGG+AGG + chr1_1:6382052-6382071 Msa0003890:intron 50.0%
!! GGCTTTGTTTGCGAGTTTGG+AGG - chr1_1:6382403-6382422 None:intergenic 50.0%
TATCAGACAGCTAGCGATCG+AGG - chr1_1:6382435-6382454 None:intergenic 50.0%
ATTTGCAGGCGACTGAAACC+TGG + chr1_1:6382704-6382723 Msa0003890:intron 50.0%
TTGGTTGCAGACTCCAGTTC+AGG - chr1_1:6382770-6382789 None:intergenic 50.0%
! AACCGATGGGAGCACAAAGA+AGG + chr1_1:6383234-6383253 Msa0003890:CDS 50.0%
TGCCTTCTTTGTGCTCCCAT+CGG - chr1_1:6383239-6383258 None:intergenic 50.0%
! ATGGGAGCACAAAGAAGGCA+TGG + chr1_1:6383239-6383258 Msa0003890:CDS 50.0%
! TGGGAGCACAAAGAAGGCAT+GGG + chr1_1:6383240-6383259 Msa0003890:CDS 50.0%
! CAAAGAAGGCATGGGGATCA+TGG + chr1_1:6383248-6383267 Msa0003890:CDS 50.0%
GCTGCGGCCAAATTGAATTG+AGG + chr1_1:6383723-6383742 Msa0003890:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG - chr1_1:6384094-6384113 None:intergenic 50.0%
TGGACATGTCTACGTTCTGC+AGG + chr1_1:6384235-6384254 Msa0003890:intron 50.0%
!!! CCGTTTTCGAGTAGGTAAGC+AGG - chr1_1:6384530-6384549 None:intergenic 50.0%
GTATGACCCCAAAGCGAAGT+TGG - chr1_1:6384695-6384714 None:intergenic 50.0%
!! CATCGACTTGGCAGATGTAC+TGG + chr1_1:6384935-6384954 Msa0003890:three_prime_UTR 50.0%
CAGTTCAACCAGTGACTCAG+TGG - chr1_1:6384982-6385001 None:intergenic 50.0%
! TAGTTGGTGCACCTGGAAGC+GGG + chr1_1:6379764-6379783 Msa0003890:CDS 55.0%
! AAGGTGGATTTCCCGCTTCC+AGG - chr1_1:6379778-6379797 None:intergenic 55.0%
AACCTGACAAACGCGAACCC+AGG - chr1_1:6379833-6379852 None:intergenic 55.0%
CACACCCCTTGATTCACCTC+AGG - chr1_1:6380525-6380544 None:intergenic 55.0%
CCACCTCCTGCAATCAAAGC+AGG - chr1_1:6380872-6380891 None:intergenic 55.0%
CCTGCTTTGATTGCAGGAGG+TGG + chr1_1:6380869-6380888 Msa0003890:intron 55.0%
GACCGAAGCAGCCATGTGAA+AGG - chr1_1:6381338-6381357 None:intergenic 55.0%
GGCGAGTGATGTCTCCAACA+TGG - chr1_1:6381833-6381852 None:intergenic 55.0%
TGTTTGGGAGTTTGGAGGGG+AGG + chr1_1:6382057-6382076 Msa0003890:intron 55.0%
GTTTGGGAGTTTGGAGGGGA+GGG + chr1_1:6382058-6382077 Msa0003890:intron 55.0%
TTTGGGAGTTTGGAGGGGAG+GGG + chr1_1:6382059-6382078 Msa0003890:intron 55.0%
TTTGGGAGAGGAGGGCTTTG+GGG - chr1_1:6382333-6382352 None:intergenic 55.0%
! CTTTGGGAGAGGAGGGCTTT+GGG - chr1_1:6382334-6382353 None:intergenic 55.0%
! ACTTTGGGAGAGGAGGGCTT+TGG - chr1_1:6382335-6382354 None:intergenic 55.0%
GTTTGCGAGTTTGGAGGGGA+GGG - chr1_1:6382397-6382416 None:intergenic 55.0%
TGTTTGCGAGTTTGGAGGGG+AGG - chr1_1:6382398-6382417 None:intergenic 55.0%
AGACTCCAGTTCAGGACCTG+CGG - chr1_1:6382762-6382781 None:intergenic 55.0%
GACATGGGTCACACCTTCTC+TGG - chr1_1:6382864-6382883 None:intergenic 55.0%
AAGAGGCTGCAAGGTTCTCC+AGG + chr1_1:6382946-6382965 Msa0003890:CDS 55.0%
! GGGAGCACAAAGAAGGCATG+GGG + chr1_1:6383241-6383260 Msa0003890:CDS 55.0%
!!! GTTTTGGTGTTGGCACGGAG+TGG + chr1_1:6383469-6383488 Msa0003890:CDS 55.0%
TAGGTCCGACCCCACTTAGT+GGG + chr1_1:6384086-6384105 Msa0003890:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG + chr1_1:6384092-6384111 Msa0003890:intron 55.0%
!!! CCAAACGCCCGTTTTCGAGT+AGG - chr1_1:6384538-6384557 None:intergenic 55.0%
CCTACTCGAAAACGGGCGTT+TGG + chr1_1:6384535-6384554 Msa0003890:CDS 55.0%
CTCGAAAACGGGCGTTTGGT+TGG + chr1_1:6384539-6384558 Msa0003890:CDS 55.0%
GGGGTCATACCACAGTCCTT+AGG + chr1_1:6384705-6384724 Msa0003890:three_prime_UTR 55.0%
TGGCAGATGTACTGGGTCAC+TGG + chr1_1:6384943-6384962 Msa0003890:three_prime_UTR 55.0%
GGCAGATGTACTGGGTCACT+GGG + chr1_1:6384944-6384963 Msa0003890:three_prime_UTR 55.0%
GTACTGGGTCACTGGGTCAA+TGG + chr1_1:6384951-6384970 Msa0003890:three_prime_UTR 55.0%
TGGTCGAACCACTGAGTCAC+TGG + chr1_1:6384971-6384990 Msa0003890:three_prime_UTR 55.0%
TGCGTTCCTCTTCTCGCACC+TGG + chr1_1:6379812-6379831 Msa0003890:CDS 60.0%
GCGTTCCTCTTCTCGCACCT+GGG + chr1_1:6379813-6379832 Msa0003890:CDS 60.0%
CACCTGGGTTCGCGTTTGTC+AGG + chr1_1:6379828-6379847 Msa0003890:CDS 60.0%
! TTGGGAGAGGAGGGCTTTGG+GGG - chr1_1:6382332-6382351 None:intergenic 60.0%
TGCAGGCGACTGAAACCTGG+CGG + chr1_1:6382707-6382726 Msa0003890:intron 60.0%
TGATGCCGCAGGTCCTGAAC+TGG + chr1_1:6382754-6382773 Msa0003890:CDS 60.0%
GGGACGACAACAGCATTCCC+AGG - chr1_1:6382815-6382834 None:intergenic 60.0%
!! TTGGTGTTGGCACGGAGTGG+AGG + chr1_1:6383472-6383491 Msa0003890:CDS 60.0%
CTAGGTCCGACCCCACTTAG+TGG + chr1_1:6384085-6384104 Msa0003890:intron 60.0%
!! ACTCGGCTCGGACATCGACT+TGG + chr1_1:6384923-6384942 Msa0003890:three_prime_UTR 60.0%
GCGAACCCAGGTGCGAGAAG+AGG - chr1_1:6379821-6379840 None:intergenic 65.0%
GGAGTTTGGAGGGGAGGGGA+GGG + chr1_1:6382063-6382082 Msa0003890:intron 65.0%
!! AGGGGAGGGCTTTGGGTGGT+AGG + chr1_1:6382077-6382096 Msa0003890:intron 65.0%
!! TGGGAGAGGAGGGCTTTGGG+GGG - chr1_1:6382331-6382350 None:intergenic 65.0%
AGGCGACTGAAACCTGGCGG+TGG + chr1_1:6382710-6382729 Msa0003890:intron 65.0%
CGACTGAAACCTGGCGGTGG+AGG + chr1_1:6382713-6382732 Msa0003890:CDS 65.0%
! GCATTGACACCTCCACCGCC+AGG - chr1_1:6382725-6382744 None:intergenic 65.0%
GGGAGTTTGGAGGGGAGGGG+AGG + chr1_1:6382062-6382081 Msa0003890:intron 70.0%
TGGAGGGGAGGGGAGGGCTT+TGG + chr1_1:6382069-6382088 Msa0003890:intron 70.0%
GGAGGGGAGGGGAGGGCTTT+GGG + chr1_1:6382070-6382089 Msa0003890:intron 70.0%
!! GGGGAGGGGAGGGCTTTGGG+TGG + chr1_1:6382073-6382092 Msa0003890:intron 75.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 6379472 6385111 6379472 ID=Msa0003890;Name=Msa0003890
chr1_1 mRNA 6379472 6385111 6379472 ID=Msa0003890-mRNA-1;Parent=Msa0003890;Name=Msa0003890-mRNA-1;_AED=0.03;_eAED=0.03;_QI=120|1|1|1|1|1|6|534|753
chr1_1 exon 6379472 6379625 6379472 ID=Msa0003890-mRNA-1:exon:2063;Parent=Msa0003890-mRNA-1
chr1_1 exon 6379740 6379849 6379740 ID=Msa0003890-mRNA-1:exon:2064;Parent=Msa0003890-mRNA-1
chr1_1 exon 6380940 6381904 6380940 ID=Msa0003890-mRNA-1:exon:2065;Parent=Msa0003890-mRNA-1
chr1_1 exon 6382712 6383372 6382712 ID=Msa0003890-mRNA-1:exon:2066;Parent=Msa0003890-mRNA-1
chr1_1 exon 6383457 6383627 6383457 ID=Msa0003890-mRNA-1:exon:2067;Parent=Msa0003890-mRNA-1
chr1_1 exon 6384257 6385111 6384257 ID=Msa0003890-mRNA-1:exon:2068;Parent=Msa0003890-mRNA-1
chr1_1 five_prime_UTR 6379472 6379591 6379472 ID=Msa0003890-mRNA-1:five_prime_utr;Parent=Msa0003890-mRNA-1
chr1_1 CDS 6379592 6379625 6379592 ID=Msa0003890-mRNA-1:cds;Parent=Msa0003890-mRNA-1
chr1_1 CDS 6379740 6379849 6379740 ID=Msa0003890-mRNA-1:cds;Parent=Msa0003890-mRNA-1
chr1_1 CDS 6380940 6381904 6380940 ID=Msa0003890-mRNA-1:cds;Parent=Msa0003890-mRNA-1
chr1_1 CDS 6382712 6383372 6382712 ID=Msa0003890-mRNA-1:cds;Parent=Msa0003890-mRNA-1
chr1_1 CDS 6383457 6383627 6383457 ID=Msa0003890-mRNA-1:cds;Parent=Msa0003890-mRNA-1
chr1_1 CDS 6384257 6384577 6384257 ID=Msa0003890-mRNA-1:cds;Parent=Msa0003890-mRNA-1
chr1_1 three_prime_UTR 6384578 6385111 6384578 ID=Msa0003890-mRNA-1:three_prime_utr;Parent=Msa0003890-mRNA-1
Gene Sequence

>Msa0003890

ATGGACATGGACATGGACCTCGACAACAACAAAGATGCAAAACCCATTTTGGTAATCTTAGTTGGTGCACCTGGAAGCGGGAAATCCACCTTCTGTGAAGAGGTTATGCGTTCCTCTTCTCGCACCTGGGTTCGCGTTTGTCAGGACACTATTGGAAACGGTAAAGCAGGAAGTAAAGCTCAATGCCTAAGTAGTGCAGCTAGAGCATTGAAGGATGGGAAGAGTGTATTCATTGACAGGTGCAATCTTAATAGAGAACAGCGGTCAGATTTTTTAAAGCTTCGGGGTGAATCCCAAATAGATATCCATGCAGTTGTACTTGACCTTCCTGCTAAGCTGTGTATTTCTCGATCTGTTAAACGATCTGGGCATGAAGGAAATTTGCAAGGTGGAAAAGCTGCTGCAGTTGTGAATAGAATGCTTCAAAGTAAAGAGTTGCCCAAATTAAGTGAAGGCTTTAACCGAATAACATTTTGTCAGGGTGAGAGTAATGTCAAAGATGCTATTGATACATATCAAAAACTTGGGCCACTGGAGAACCTTTCACATGGCTGCTTCGGTCAGAAAAATCCAGATTCCAAAATCCAATCTAATATAATGAAATTCCTGAAAAAGGTAGAGGTACCAGTTGATACTGCATCTAAAGAAAATACCATTGGAGACTCTACTTCCCAGACTTCTGGAAAAAATGATTCCCTCTGCAAAGATATGGACAAAATCCCAACAGCGCATGCTAATTCCAAGTTAGGGTCAAAAGATATAGAAGGTCAGACTGATAAATCTGCTGGTTCCTGTCACAATCAAGTTTCTCTTGATGATATTCCGACTCTGGCATTTCCATCTATTTCAACAGCAGATTTCCAATTCAACCATGACAAGGCAGCAGATATTATTGTTGAGAAGGTTGCAGAGTACTCAAATAAGATGGGGAATGCCAGACTTGTTCTAGTTGACTTGACACATAGATCAAAAATTTTGTCCTTAGTTAAATCCAAAGCGGCAGAAAAGAACGTCGACACCCAGAAGTTCTTTACCCATGTTGGAGACATCACTCGCCTTTATTCAACTGGAGGTTTGCGCTGTAATGTCATTGCAAATGCTGCGAACTGGCGACTGAAACCTGGCGGTGGAGGTGTCAATGCATCAATTTTTGATGCCGCAGGTCCTGAACTGGAGTCTGCAACCAAAGAAAAAGCAAAGACTCTTTCACCTGGGAATGCTGTTGTCGTCCCTCTACCTTCATCTTCTCCTTTGTTCACCAGAGAAGGTGTGACCCATGTCATACATGTCCTTGGACCTAATATGAATCCACAAAGACCAAATTGTCTGAACAATGATTATGAAAGAGGCTGCAAGGTTCTCCAGGATGCTTATGCATCACTATTTGAAGGTTTTGCATCAATTGTTAGGAACACGGTACATCAAAATGAAAACCTTGGAAAAAAGTCTTTGGAGTTGCAAGATCAGTCTGAACAGTGTTCCAGAAATCATTCTACAAATACTGATCAAAAGAGTAAGAGAGATGCTGATCATGGATTGGAAAAAAGCAAGAAATACAAGGGAACCCTTGATGGTTTTGACACGACCTTTACGGGTTCTAGAGATGAAAAGGTAGATTCAGAGCATAAAAGAACCGATGGGAGCACAAAGAAGGCATGGGGATCATGGGCTCAAGCTCTTCACCTAATAGCTATGCATCCTGAAAAGCATAAGGATGACTTGCTTGAAATTTCAGAGGACATTGTTGTATTGAATGATATGTATCCTAAGGCACAAAAACATGTTTTGGTGTTGGCACGGAGTGGAGGTCTTGATTGCCTGTCAGATGTCCAAAATGAGCACCTTTCGGTATTGAAAAGGATGCACGCAGTGGGTTTAAAATGGGCTGAGAAATTCTTGAGTGAGAATTCTTCACTGGTATTTCGCCTTGGATATCACTCGGTTCCTTCAATGCGACAACTACATTTACATGTTATTAGCCAGGACTTTGACTCAAAACATTTGAAGAATAAGAAGCACTGGAACTCGTTTAACACTGCTTTCTTTCGCGACTCAGTAGATATAATTGATGAGGTATCTATTCATGGAAAAGCAACATTGAAAGATGACGACAAGCTACTGTCTATGGAGTTGAGGTGCCACAAATGTAAAAGTGCACATCCAAACATACCCCGCTTAAAGTCGCATATTAGTAGCTGTCAAGCACCCTTTCCTGCTTACCTACTCGAAAACGGGCGTTTGGTTGGTGCTTGCACCAAGTAA
Protein sequence

>Msa0003890

MDMDMDLDNNKDAKPILVILVGAPGSGKSTFCEEVMRSSSRTWVRVCQDTIGNGKAGSKAQCLSSAARALKDGKSVFIDRCNLNREQRSDFLKLRGESQIDIHAVVLDLPAKLCISRSVKRSGHEGNLQGGKAAAVVNRMLQSKELPKLSEGFNRITFCQGESNVKDAIDTYQKLGPLENLSHGCFGQKNPDSKIQSNIMKFLKKVEVPVDTASKENTIGDSTSQTSGKNDSLCKDMDKIPTAHANSKLGSKDIEGQTDKSAGSCHNQVSLDDIPTLAFPSISTADFQFNHDKAADIIVEKVAEYSNKMGNARLVLVDLTHRSKILSLVKSKAAEKNVDTQKFFTHVGDITRLYSTGGLRCNVIANAANWRLKPGGGGVNASIFDAAGPELESATKEKAKTLSPGNAVVVPLPSSSPLFTREGVTHVIHVLGPNMNPQRPNCLNNDYERGCKVLQDAYASLFEGFASIVRNTVHQNENLGKKSLELQDQSEQCSRNHSTNTDQKSKRDADHGLEKSKKYKGTLDGFDTTFTGSRDEKVDSEHKRTDGSTKKAWGSWAQALHLIAMHPEKHKDDLLEISEDIVVLNDMYPKAQKHVLVLARSGGLDCLSDVQNEHLSVLKRMHAVGLKWAEKFLSENSSLVFRLGYHSVPSMRQLHLHVISQDFDSKHLKNKKHWNSFNTAFFRDSVDIIDEVSIHGKATLKDDDKLLSMELRCHKCKSAHPNIPRLKSHISSCQAPFPAYLLENGRLVGACTK*