Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003890 | Msa1328040 | 0.813845 | 2.082295e-51 | -8.615850e-47 |
| Msa0021510 | Msa1328040 | 0.826430 | 2.724775e-54 | -8.615850e-47 |
| Msa0037570 | Msa1328040 | -0.817721 | 2.847810e-52 | -8.615850e-47 |
| Msa0044330 | Msa1328040 | 0.803559 | 3.290454e-49 | -8.615850e-47 |
| Msa0074240 | Msa1328040 | 0.805513 | 1.287569e-49 | -8.615850e-47 |
| Msa0078900 | Msa1328040 | 0.816370 | 5.725811e-52 | -8.615850e-47 |
| Msa0621490 | Msa1328040 | 0.810019 | 1.419412e-50 | -8.615850e-47 |
| Msa0661650 | Msa1328040 | 0.808435 | 3.101262e-50 | -8.615850e-47 |
| Msa0709400 | Msa1328040 | 0.803329 | 3.672173e-49 | -8.615850e-47 |
| Msa0731940 | Msa1328040 | 0.801834 | 7.468217e-49 | -8.615850e-47 |
| Msa0735170 | Msa1328040 | 0.800677 | 1.288121e-48 | -8.615850e-47 |
| Msa0136070 | Msa1328040 | 0.800032 | 1.742988e-48 | -8.615850e-47 |
| Msa0139060 | Msa1328040 | 0.801956 | 7.050398e-49 | -8.615850e-47 |
| Msa0171540 | Msa1328040 | 0.805442 | 1.332266e-49 | -8.615850e-47 |
| Msa0180500 | Msa1328040 | 0.803561 | 3.286713e-49 | -8.615850e-47 |
| Msa0211150 | Msa1328040 | 0.822262 | 2.602491e-53 | -8.615850e-47 |
| Msa0222890 | Msa1328040 | 0.801682 | 8.022776e-49 | -8.615850e-47 |
| Msa1276890 | Msa1328040 | 0.835884 | 1.293774e-56 | -8.615850e-47 |
| Msa1277660 | Msa1328040 | 0.821215 | 4.544930e-53 | -8.615850e-47 |
| Msa1287460 | Msa1328040 | 0.806908 | 6.545276e-50 | -8.615850e-47 |
| Msa1327980 | Msa1328040 | 0.983998 | 2.675810e-159 | -8.615850e-47 |
| Msa1328040 | Msa1392780 | 0.805508 | 1.290366e-49 | -8.615850e-47 |
| Msa1328040 | Msa1400870 | -0.806460 | 8.140047e-50 | -8.615850e-47 |
| Msa1328040 | Msa1412530 | 0.814755 | 1.310597e-51 | -8.615850e-47 |
| Msa1328040 | Msa1424750 | 0.805251 | 1.460921e-49 | -8.615850e-47 |
| Msa1328040 | Msa1440560 | 0.806744 | 7.087744e-50 | -8.615850e-47 |
| Msa1328040 | Msa1466540 | 0.823263 | 1.521789e-53 | -8.615850e-47 |
| Msa0998690 | Msa1328040 | 0.809312 | 2.014024e-50 | -8.615850e-47 |
| Msa1003620 | Msa1328040 | 0.819749 | 9.862210e-53 | -8.615850e-47 |
| Msa1014540 | Msa1328040 | 0.837377 | 5.389011e-57 | -8.615850e-47 |
| Msa1023120 | Msa1328040 | 0.800973 | 1.121032e-48 | -8.615850e-47 |
| Msa1035480 | Msa1328040 | 0.814331 | 1.626904e-51 | -8.615850e-47 |
| Msa1075540 | Msa1328040 | 0.810138 | 1.337987e-50 | -8.615850e-47 |
| Msa1075650 | Msa1328040 | 0.801542 | 8.572220e-49 | -8.615850e-47 |
| Msa1100050 | Msa1328040 | 0.809434 | 1.896046e-50 | -8.615850e-47 |
| Msa0257460 | Msa1328040 | 0.800226 | 1.591430e-48 | -8.615850e-47 |
| Msa1109680 | Msa1328040 | 0.800348 | 1.503362e-48 | -8.615850e-47 |
| Msa1113170 | Msa1328040 | 0.804229 | 2.388178e-49 | -8.615850e-47 |
| Msa1119480 | Msa1328040 | 0.803244 | 3.824781e-49 | -8.615850e-47 |
| Msa1121490 | Msa1328040 | 0.812157 | 4.882452e-51 | -8.615850e-47 |
| Msa1124960 | Msa1328040 | 0.804030 | 2.626687e-49 | -8.615850e-47 |
| Msa1162270 | Msa1328040 | 0.801903 | 7.227816e-49 | -8.615850e-47 |
| Msa1174910 | Msa1328040 | 0.823978 | 1.035235e-53 | -8.615850e-47 |
| Msa1181910 | Msa1328040 | 0.811922 | 5.492599e-51 | -8.615850e-47 |
| Msa1186950 | Msa1328040 | -0.811148 | 8.093745e-51 | -8.615850e-47 |
| Msa0547320 | Msa1328040 | 0.800424 | 1.450935e-48 | -8.615850e-47 |
| Msa0602390 | Msa1328040 | 0.801780 | 7.661140e-49 | -8.615850e-47 |
| Msa0844490 | Msa1328040 | 0.805962 | 1.036236e-49 | -8.615850e-47 |
| Msa0871270 | Msa1328040 | 0.828475 | 8.805984e-55 | -8.615850e-47 |
| Msa0897330 | Msa1328040 | 0.812387 | 4.350227e-51 | -8.615850e-47 |
| Msa0938220 | Msa1328040 | 0.836612 | 8.448727e-57 | -8.615850e-47 |
| Msa0947660 | Msa1328040 | 0.813517 | 2.458850e-51 | -8.615850e-47 |
| Msa0969810 | Msa1328040 | 0.805055 | 1.605757e-49 | -8.615850e-47 |
| Msa0974070 | Msa1328040 | 0.825085 | 5.681559e-54 | -8.615850e-47 |
| Msa0975340 | Msa1328040 | 0.803325 | 3.678277e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 11 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCGGAGCCGGAAATAAAATT+TGG | 0.310961 | 8_4:-45721804 | Msa1328040:CDS |
| GTCGTATACAGCGGCGGAGC+CGG | 0.460313 | 8_4:-45721817 | Msa1328040:CDS |
| CGTACTGGAGTTAAGTGGTA+TGG | 0.485176 | 8_4:-45721955 | Msa1328040:CDS |
| TAGAATATGATAAAACGTAC+TGG | 0.488816 | 8_4:-45721970 | Msa1328040:CDS |
| AATGAGACGGTGATATGGGA+TGG | 0.537767 | 8_4:+45721916 | None:intergenic |
| AGCCGGAAATAAAATTTGGA+TGG | 0.541216 | 8_4:-45721800 | Msa1328040:CDS |
| ATGACATTGTTACAATGTGA+TGG | 0.550818 | 8_4:+45721871 | None:intergenic |
| GCCGGAAATAAAATTTGGAT+GGG | 0.580839 | 8_4:-45721799 | Msa1328040:CDS |
| GACGGTGATATGGGATGGAG+TGG | 0.602020 | 8_4:+45721921 | None:intergenic |
| TAAAACGTACTGGAGTTAAG+TGG | 0.625133 | 8_4:-45721960 | Msa1328040:CDS |
| TGACATTGTTACAATGTGAT+GGG | 0.627569 | 8_4:+45721872 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGTAGAAAATATAAAATA+TGG | + | chr8_4:45721861-45721880 | None:intergenic | 10.0% |
| !! | AAAGTAGAAAATATAAAATA+TGG | + | chr8_4:45721861-45721880 | None:intergenic | 10.0% |
| !!! | ATTAAGAATTTTTTAACTTC+TGG | - | chr8_4:45721829-45721848 | Msa1328040:CDS | 15.0% |
| !!! | TTAAGAATTTTTTAACTTCT+GGG | - | chr8_4:45721830-45721849 | Msa1328040:CDS | 15.0% |
| !!! | TCTACAAATGTATTTTATTT+AGG | - | chr8_4:45721880-45721899 | Msa1328040:CDS | 15.0% |
| !! | AATCATATTATTTATGTCTA+TGG | - | chr8_4:45722736-45722755 | Msa1328040:intron | 15.0% |
| !!! | ATTAAGAATTTTTTAACTTC+TGG | - | chr8_4:45721829-45721848 | Msa1328040:CDS | 15.0% |
| !!! | TTAAGAATTTTTTAACTTCT+GGG | - | chr8_4:45721830-45721849 | Msa1328040:CDS | 15.0% |
| !!! | TCTACAAATGTATTTTATTT+AGG | - | chr8_4:45721880-45721899 | Msa1328040:CDS | 15.0% |
| !! | AATCATATTATTTATGTCTA+TGG | - | chr8_4:45722736-45722755 | Msa1328040:intron | 15.0% |
| !! | AAATGAATGAAAATATAGAC+TGG | - | chr8_4:45721965-45721984 | Msa1328040:CDS | 20.0% |
| !!! | CTATTTTCGTTTTTGTTAAT+GGG | - | chr8_4:45722559-45722578 | Msa1328040:intron | 20.0% |
| !!! | TATTTTCGTTTTTGTTAATG+GGG | - | chr8_4:45722560-45722579 | Msa1328040:intron | 20.0% |
| !! | ATAAACATAACATAAGCAAA+TGG | + | chr8_4:45722957-45722976 | None:intergenic | 20.0% |
| !! | AGAAAATATCAGTTTCATTA+TGG | + | chr8_4:45723084-45723103 | None:intergenic | 20.0% |
| !! | ACCAATTATAAAAAATGAGA+CGG | + | chr8_4:45723185-45723204 | None:intergenic | 20.0% |
| !! | AAATGAATGAAAATATAGAC+TGG | - | chr8_4:45721965-45721984 | Msa1328040:CDS | 20.0% |
| !!! | CTATTTTCGTTTTTGTTAAT+GGG | - | chr8_4:45722559-45722578 | Msa1328040:intron | 20.0% |
| !!! | TATTTTCGTTTTTGTTAATG+GGG | - | chr8_4:45722560-45722579 | Msa1328040:intron | 20.0% |
| !! | ATAAACATAACATAAGCAAA+TGG | + | chr8_4:45722957-45722976 | None:intergenic | 20.0% |
| !! | AGAAAATATCAGTTTCATTA+TGG | + | chr8_4:45723084-45723103 | None:intergenic | 20.0% |
| !! | ACCAATTATAAAAAATGAGA+CGG | + | chr8_4:45723185-45723204 | None:intergenic | 20.0% |
| ! | TAGGAAGTTATATTATGATG+TGG | - | chr8_4:45721899-45721918 | Msa1328040:CDS | 25.0% |
| !!! | TCTTATTTCTGCTAACTAAT+AGG | - | chr8_4:45722145-45722164 | Msa1328040:intron | 25.0% |
| !!! | CTTATTTCTGCTAACTAATA+GGG | - | chr8_4:45722146-45722165 | Msa1328040:intron | 25.0% |
| !!! | TTATTTCTGCTAACTAATAG+GGG | - | chr8_4:45722147-45722166 | Msa1328040:intron | 25.0% |
| !! | TACTCATAATTTGCAAGAAA+TGG | + | chr8_4:45722401-45722420 | None:intergenic | 25.0% |
| ! | AGCAAATATCTATAGAAGTA+TGG | + | chr8_4:45722478-45722497 | None:intergenic | 25.0% |
| !!! | CTATAGATATTTGCTGATTT+AGG | - | chr8_4:45722483-45722502 | Msa1328040:intron | 25.0% |
| !!! | CTGTTTTAAAGTTTTGTTCT+TGG | - | chr8_4:45722526-45722545 | Msa1328040:intron | 25.0% |
| ! | CCATTAACAAAAACGAAAAT+AGG | + | chr8_4:45722561-45722580 | None:intergenic | 25.0% |
| !!! | CCTATTTTCGTTTTTGTTAA+TGG | - | chr8_4:45722558-45722577 | Msa1328040:intron | 25.0% |
| !!! | TCAACTTACTTCTTTAGTTT+TGG | - | chr8_4:45722626-45722645 | Msa1328040:intron | 25.0% |
| ! | AGTTGTTCTATAATGCTAAA+TGG | - | chr8_4:45722673-45722692 | Msa1328040:intron | 25.0% |
| ! | TAATGTTAAGTTAATGTTGC+AGG | - | chr8_4:45722779-45722798 | Msa1328040:intron | 25.0% |
| !!! | ACTTTGTTAGCTTATTGTTT+TGG | - | chr8_4:45722882-45722901 | Msa1328040:intron | 25.0% |
| !! | CTGTATTTTGCATTTTATCA+AGG | - | chr8_4:45722915-45722934 | Msa1328040:intron | 25.0% |
| ! | TAGAATATGATAAAACGTAC+TGG | - | chr8_4:45723115-45723134 | Msa1328040:intron | 25.0% |
| !!! | ACCGTCTCATTTTTTATAAT+TGG | - | chr8_4:45723181-45723200 | Msa1328040:intron | 25.0% |
| ! | TAGGAAGTTATATTATGATG+TGG | - | chr8_4:45721899-45721918 | Msa1328040:CDS | 25.0% |
| !!! | TCTTATTTCTGCTAACTAAT+AGG | - | chr8_4:45722145-45722164 | Msa1328040:intron | 25.0% |
| !!! | CTTATTTCTGCTAACTAATA+GGG | - | chr8_4:45722146-45722165 | Msa1328040:intron | 25.0% |
| !!! | TTATTTCTGCTAACTAATAG+GGG | - | chr8_4:45722147-45722166 | Msa1328040:intron | 25.0% |
| !! | TACTCATAATTTGCAAGAAA+TGG | + | chr8_4:45722401-45722420 | None:intergenic | 25.0% |
| ! | AGCAAATATCTATAGAAGTA+TGG | + | chr8_4:45722478-45722497 | None:intergenic | 25.0% |
| !!! | CTATAGATATTTGCTGATTT+AGG | - | chr8_4:45722483-45722502 | Msa1328040:intron | 25.0% |
| !!! | CTGTTTTAAAGTTTTGTTCT+TGG | - | chr8_4:45722526-45722545 | Msa1328040:intron | 25.0% |
| ! | CCATTAACAAAAACGAAAAT+AGG | + | chr8_4:45722561-45722580 | None:intergenic | 25.0% |
| !!! | CCTATTTTCGTTTTTGTTAA+TGG | - | chr8_4:45722558-45722577 | Msa1328040:intron | 25.0% |
| !!! | TCAACTTACTTCTTTAGTTT+TGG | - | chr8_4:45722626-45722645 | Msa1328040:intron | 25.0% |
| ! | AGTTGTTCTATAATGCTAAA+TGG | - | chr8_4:45722673-45722692 | Msa1328040:intron | 25.0% |
| ! | TAATGTTAAGTTAATGTTGC+AGG | - | chr8_4:45722779-45722798 | Msa1328040:intron | 25.0% |
| !!! | ACTTTGTTAGCTTATTGTTT+TGG | - | chr8_4:45722882-45722901 | Msa1328040:intron | 25.0% |
| !! | CTGTATTTTGCATTTTATCA+AGG | - | chr8_4:45722915-45722934 | Msa1328040:intron | 25.0% |
| ! | TAGAATATGATAAAACGTAC+TGG | - | chr8_4:45723115-45723134 | Msa1328040:intron | 25.0% |
| !!! | ACCGTCTCATTTTTTATAAT+TGG | - | chr8_4:45723181-45723200 | Msa1328040:intron | 25.0% |
| TTTATTCCTTTCCCATAAGA+TGG | + | chr8_4:45721789-45721808 | None:intergenic | 30.0% | |
| ! | TATCAGTAAGATTTGGTCAA+TGG | + | chr8_4:45721928-45721947 | None:intergenic | 30.0% |
| ATACGAGTTGTTTATTGTAG+AGG | - | chr8_4:45722013-45722032 | Msa1328040:intron | 30.0% | |
| ACTTAGAAATTGTATCAGTC+TGG | + | chr8_4:45722049-45722068 | None:intergenic | 30.0% | |
| ! | TATTTCTGCTAACTAATAGG+GGG | - | chr8_4:45722148-45722167 | Msa1328040:intron | 30.0% |
| ! | CATATCGCTTACAATTTGTT+TGG | - | chr8_4:45722177-45722196 | Msa1328040:intron | 30.0% |
| !! | GAGAATGTCATTGATTTAGT+TGG | + | chr8_4:45722608-45722627 | None:intergenic | 30.0% |
| ! | CTTGTTGGTTACAAATTTGA+CGG | - | chr8_4:45722851-45722870 | Msa1328040:intron | 30.0% |
| AAAAAATGAGACGGTGATAT+GGG | + | chr8_4:45723176-45723195 | None:intergenic | 30.0% | |
| TAAAAAATGAGACGGTGATA+TGG | + | chr8_4:45723177-45723196 | None:intergenic | 30.0% | |
| TGACATTGTTACAATGTGAT+GGG | + | chr8_4:45723216-45723235 | None:intergenic | 30.0% | |
| ATGACATTGTTACAATGTGA+TGG | + | chr8_4:45723217-45723236 | None:intergenic | 30.0% | |
| TTTATTCCTTTCCCATAAGA+TGG | + | chr8_4:45721789-45721808 | None:intergenic | 30.0% | |
| ! | TATCAGTAAGATTTGGTCAA+TGG | + | chr8_4:45721928-45721947 | None:intergenic | 30.0% |
| ATACGAGTTGTTTATTGTAG+AGG | - | chr8_4:45722013-45722032 | Msa1328040:intron | 30.0% | |
| ACTTAGAAATTGTATCAGTC+TGG | + | chr8_4:45722049-45722068 | None:intergenic | 30.0% | |
| ! | TATTTCTGCTAACTAATAGG+GGG | - | chr8_4:45722148-45722167 | Msa1328040:intron | 30.0% |
| ! | CATATCGCTTACAATTTGTT+TGG | - | chr8_4:45722177-45722196 | Msa1328040:intron | 30.0% |
| !! | GAGAATGTCATTGATTTAGT+TGG | + | chr8_4:45722608-45722627 | None:intergenic | 30.0% |
| ! | CTTGTTGGTTACAAATTTGA+CGG | - | chr8_4:45722851-45722870 | Msa1328040:intron | 30.0% |
| AAAAAATGAGACGGTGATAT+GGG | + | chr8_4:45723176-45723195 | None:intergenic | 30.0% | |
| TAAAAAATGAGACGGTGATA+TGG | + | chr8_4:45723177-45723196 | None:intergenic | 30.0% | |
| TGACATTGTTACAATGTGAT+GGG | + | chr8_4:45723216-45723235 | None:intergenic | 30.0% | |
| ATGACATTGTTACAATGTGA+TGG | + | chr8_4:45723217-45723236 | None:intergenic | 30.0% | |
| ! | ATGGTAGTGTTACCATCTTA+TGG | - | chr8_4:45721774-45721793 | Msa1328040:CDS | 35.0% |
| ! | TGGTAGTGTTACCATCTTAT+GGG | - | chr8_4:45721775-45721794 | Msa1328040:CDS | 35.0% |
| TGACCAAATCTTACTGATAG+AGG | - | chr8_4:45721929-45721948 | Msa1328040:CDS | 35.0% | |
| GACCAAATCTTACTGATAGA+GGG | - | chr8_4:45721930-45721949 | Msa1328040:CDS | 35.0% | |
| AACCCTCTATCAGTAAGATT+TGG | + | chr8_4:45721935-45721954 | None:intergenic | 35.0% | |
| AAATTGTATCAGTCTGGTGA+AGG | + | chr8_4:45722043-45722062 | None:intergenic | 35.0% | |
| TGTTAGTGACGTTATAAGGA+TGG | + | chr8_4:45722093-45722112 | None:intergenic | 35.0% | |
| CTTGTGTTAGTGACGTTATA+AGG | + | chr8_4:45722097-45722116 | None:intergenic | 35.0% | |
| AGAACGAGTTTCATCATCTA+TGG | - | chr8_4:45722119-45722138 | Msa1328040:intron | 35.0% | |
| !! | TGGCTCAGATGATTTTGAAA+TGG | + | chr8_4:45722458-45722477 | None:intergenic | 35.0% |
| AGGATGAATCAGTGTAGATT+TGG | - | chr8_4:45722799-45722818 | Msa1328040:intron | 35.0% | |
| GGTTATTCAATCTTCCTTGT+TGG | - | chr8_4:45722836-45722855 | Msa1328040:intron | 35.0% | |
| CGTCAAATTTGTAACCAACA+AGG | + | chr8_4:45722853-45722872 | None:intergenic | 35.0% | |
| GTTTATCTTGTGTAGAACAG+AGG | - | chr8_4:45722971-45722990 | Msa1328040:intron | 35.0% | |
| GCTATAACTCTGTAAAGTTG+TGG | - | chr8_4:45723044-45723063 | Msa1328040:intron | 35.0% | |
| TAAAACGTACTGGAGTTAAG+TGG | - | chr8_4:45723125-45723144 | Msa1328040:intron | 35.0% | |
| AGCCGGAAATAAAATTTGGA+TGG | - | chr8_4:45723285-45723304 | Msa1328040:intron | 35.0% | |
| GCCGGAAATAAAATTTGGAT+GGG | - | chr8_4:45723286-45723305 | Msa1328040:intron | 35.0% | |
| !! | GCCCATCCAAATTTTATTTC+CGG | + | chr8_4:45723290-45723309 | None:intergenic | 35.0% |
| ! | ATGGTAGTGTTACCATCTTA+TGG | - | chr8_4:45721774-45721793 | Msa1328040:CDS | 35.0% |
| ! | TGGTAGTGTTACCATCTTAT+GGG | - | chr8_4:45721775-45721794 | Msa1328040:CDS | 35.0% |
| TGACCAAATCTTACTGATAG+AGG | - | chr8_4:45721929-45721948 | Msa1328040:CDS | 35.0% | |
| GACCAAATCTTACTGATAGA+GGG | - | chr8_4:45721930-45721949 | Msa1328040:CDS | 35.0% | |
| AACCCTCTATCAGTAAGATT+TGG | + | chr8_4:45721935-45721954 | None:intergenic | 35.0% | |
| AAATTGTATCAGTCTGGTGA+AGG | + | chr8_4:45722043-45722062 | None:intergenic | 35.0% | |
| TGTTAGTGACGTTATAAGGA+TGG | + | chr8_4:45722093-45722112 | None:intergenic | 35.0% | |
| CTTGTGTTAGTGACGTTATA+AGG | + | chr8_4:45722097-45722116 | None:intergenic | 35.0% | |
| AGAACGAGTTTCATCATCTA+TGG | - | chr8_4:45722119-45722138 | Msa1328040:intron | 35.0% | |
| !! | TGGCTCAGATGATTTTGAAA+TGG | + | chr8_4:45722458-45722477 | None:intergenic | 35.0% |
| AGGATGAATCAGTGTAGATT+TGG | - | chr8_4:45722799-45722818 | Msa1328040:intron | 35.0% | |
| GGTTATTCAATCTTCCTTGT+TGG | - | chr8_4:45722836-45722855 | Msa1328040:intron | 35.0% | |
| CGTCAAATTTGTAACCAACA+AGG | + | chr8_4:45722853-45722872 | None:intergenic | 35.0% | |
| GTTTATCTTGTGTAGAACAG+AGG | - | chr8_4:45722971-45722990 | Msa1328040:intron | 35.0% | |
| GCTATAACTCTGTAAAGTTG+TGG | - | chr8_4:45723044-45723063 | Msa1328040:intron | 35.0% | |
| TAAAACGTACTGGAGTTAAG+TGG | - | chr8_4:45723125-45723144 | Msa1328040:intron | 35.0% | |
| AGCCGGAAATAAAATTTGGA+TGG | - | chr8_4:45723285-45723304 | Msa1328040:intron | 35.0% | |
| GCCGGAAATAAAATTTGGAT+GGG | - | chr8_4:45723286-45723305 | Msa1328040:intron | 35.0% | |
| !! | GCCCATCCAAATTTTATTTC+CGG | + | chr8_4:45723290-45723309 | None:intergenic | 35.0% |
| GTGTTACCATCTTATGGGAA+AGG | - | chr8_4:45721780-45721799 | Msa1328040:CDS | 40.0% | |
| TGACGTTATAAGGATGGTGA+GGG | + | chr8_4:45722087-45722106 | None:intergenic | 40.0% | |
| CAACACTGTCTACATCAAGA+GGG | + | chr8_4:45722218-45722237 | None:intergenic | 40.0% | |
| GATTTGGCATTTGCACATTC+TGG | - | chr8_4:45722815-45722834 | Msa1328040:intron | 40.0% | |
| GTGTTACCATCTTATGGGAA+AGG | - | chr8_4:45721780-45721799 | Msa1328040:CDS | 40.0% | |
| TGACGTTATAAGGATGGTGA+GGG | + | chr8_4:45722087-45722106 | None:intergenic | 40.0% | |
| CAACACTGTCTACATCAAGA+GGG | + | chr8_4:45722218-45722237 | None:intergenic | 40.0% | |
| GATTTGGCATTTGCACATTC+TGG | - | chr8_4:45722815-45722834 | Msa1328040:intron | 40.0% | |
| TTGTATCAGTCTGGTGAAGG+AGG | + | chr8_4:45722040-45722059 | None:intergenic | 45.0% | |
| GACGTTATAAGGATGGTGAG+GGG | + | chr8_4:45722086-45722105 | None:intergenic | 45.0% | |
| GTGACGTTATAAGGATGGTG+AGG | + | chr8_4:45722088-45722107 | None:intergenic | 45.0% | |
| GCAACACTGTCTACATCAAG+AGG | + | chr8_4:45722219-45722238 | None:intergenic | 45.0% | |
| CGTACTGGAGTTAAGTGGTA+TGG | - | chr8_4:45723130-45723149 | Msa1328040:intron | 45.0% | |
| AATGAGACGGTGATATGGGA+TGG | + | chr8_4:45723172-45723191 | None:intergenic | 45.0% | |
| GCGGAGCCGGAAATAAAATT+TGG | - | chr8_4:45723281-45723300 | Msa1328040:intron | 45.0% | |
| TTGTATCAGTCTGGTGAAGG+AGG | + | chr8_4:45722040-45722059 | None:intergenic | 45.0% | |
| GACGTTATAAGGATGGTGAG+GGG | + | chr8_4:45722086-45722105 | None:intergenic | 45.0% | |
| GTGACGTTATAAGGATGGTG+AGG | + | chr8_4:45722088-45722107 | None:intergenic | 45.0% | |
| GCAACACTGTCTACATCAAG+AGG | + | chr8_4:45722219-45722238 | None:intergenic | 45.0% | |
| CGTACTGGAGTTAAGTGGTA+TGG | - | chr8_4:45723130-45723149 | Msa1328040:intron | 45.0% | |
| AATGAGACGGTGATATGGGA+TGG | + | chr8_4:45723172-45723191 | None:intergenic | 45.0% | |
| GCGGAGCCGGAAATAAAATT+TGG | - | chr8_4:45723281-45723300 | Msa1328040:intron | 45.0% | |
| GACGGTGATATGGGATGGAG+TGG | + | chr8_4:45723167-45723186 | None:intergenic | 55.0% | |
| GCGTGTCTCGTCGTATACAG+CGG | - | chr8_4:45723259-45723278 | Msa1328040:intron | 55.0% | |
| TGTCTCGTCGTATACAGCGG+CGG | - | chr8_4:45723262-45723281 | Msa1328040:intron | 55.0% | |
| GACGGTGATATGGGATGGAG+TGG | + | chr8_4:45723167-45723186 | None:intergenic | 55.0% | |
| GCGTGTCTCGTCGTATACAG+CGG | - | chr8_4:45723259-45723278 | Msa1328040:intron | 55.0% | |
| TGTCTCGTCGTATACAGCGG+CGG | - | chr8_4:45723262-45723281 | Msa1328040:intron | 55.0% | |
| GGATGGTGAGGGGCAGAGTA+AGG | + | chr8_4:45722076-45722095 | None:intergenic | 60.0% | |
| GGATGGTGAGGGGCAGAGTA+AGG | + | chr8_4:45722076-45722095 | None:intergenic | 60.0% | |
| GTCGTATACAGCGGCGGAGC+CGG | - | chr8_4:45723268-45723287 | Msa1328040:intron | 65.0% | |
| GTCGTATACAGCGGCGGAGC+CGG | - | chr8_4:45723268-45723287 | Msa1328040:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 45721774 | 45723333 | 45721774 | ID=Msa1328040;Name=Msa1328040 |
| chr8_4 | mRNA | 45721774 | 45723333 | 45721774 | ID=Msa1328040-mRNA-1;Parent=Msa1328040;Name=Msa1328040-mRNA-1;_AED=0.94;_eAED=0.94;_QI=0|0.25|0|0.8|1|1|5|0|80 |
| chr8_4 | exon | 45723328 | 45723333 | 45723328 | ID=Msa1328040-mRNA-1:exon:12858;Parent=Msa1328040-mRNA-1 |
| chr8_4 | exon | 45722191 | 45722199 | 45722191 | ID=Msa1328040-mRNA-1:exon:12857;Parent=Msa1328040-mRNA-1 |
| chr8_4 | exon | 45722165 | 45722170 | 45722165 | ID=Msa1328040-mRNA-1:exon:12856;Parent=Msa1328040-mRNA-1 |
| chr8_4 | exon | 45722111 | 45722116 | 45722111 | ID=Msa1328040-mRNA-1:exon:12855;Parent=Msa1328040-mRNA-1 |
| chr8_4 | exon | 45721774 | 45721989 | 45721774 | ID=Msa1328040-mRNA-1:exon:12854;Parent=Msa1328040-mRNA-1 |
| chr8_4 | CDS | 45723328 | 45723333 | 45723328 | ID=Msa1328040-mRNA-1:cds;Parent=Msa1328040-mRNA-1 |
| chr8_4 | CDS | 45722191 | 45722199 | 45722191 | ID=Msa1328040-mRNA-1:cds;Parent=Msa1328040-mRNA-1 |
| chr8_4 | CDS | 45722165 | 45722170 | 45722165 | ID=Msa1328040-mRNA-1:cds;Parent=Msa1328040-mRNA-1 |
| chr8_4 | CDS | 45722111 | 45722116 | 45722111 | ID=Msa1328040-mRNA-1:cds;Parent=Msa1328040-mRNA-1 |
| chr8_4 | CDS | 45721774 | 45721989 | 45721774 | ID=Msa1328040-mRNA-1:cds;Parent=Msa1328040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
