AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0021510


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0021510 MtrunA17_Chr1g0173371 98.712 233 3 0 2 234 748 980 5.85e-156 457
Msa0021510 MtrunA17_Chr7g0257461 68.354 237 69 3 2 234 749 983 1.36e-70 232
Msa0021510 MtrunA17_Chr3g0104551 39.062 128 73 2 112 234 757 884 2.36e-15 74.7
Msa0021510 MtrunA17_Chr2g0298121 30.151 199 105 5 50 234 784 962 2.61e-14 72.0
Msa0021510 MtrunA17_Chr4g0072071 29.130 230 133 5 6 234 404 604 3.04e-14 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0021510 AT2G41740.2 58.159 239 87 8 2 234 745 976 3.63e-49 172
Msa0021510 AT2G41740.1 58.159 239 87 8 2 234 745 976 3.63e-49 172
Msa0021510 AT3G57410.4 53.419 234 96 3 1 234 745 965 5.68e-42 152
Msa0021510 AT3G57410.1 53.419 234 96 3 1 234 745 965 5.68e-42 152
Msa0021510 AT3G57410.9 53.419 234 96 3 1 234 745 965 5.68e-42 152
Msa0021510 AT3G57410.5 53.419 234 96 3 1 234 745 965 5.68e-42 152
Msa0021510 AT3G57410.3 53.419 234 96 3 1 234 745 965 5.68e-42 152
Msa0021510 AT3G57410.2 53.419 234 96 3 1 234 745 965 5.68e-42 152
Msa0021510 AT3G57410.7 53.419 234 96 3 1 234 745 965 5.68e-42 152
Msa0021510 AT3G57410.8 53.419 234 96 3 1 234 745 965 5.68e-42 152
Msa0021510 AT4G30160.3 33.824 204 103 5 50 234 784 974 5.21e-19 85.9
Msa0021510 AT4G30160.4 33.824 204 103 5 50 234 784 974 5.21e-19 85.9
Msa0021510 AT4G30160.1 33.824 204 103 5 50 234 784 974 5.21e-19 85.9
Msa0021510 AT4G30160.2 33.824 204 103 5 50 234 793 983 5.91e-19 85.9
Msa0021510 AT2G29890.1 51.667 60 29 0 175 234 850 909 8.48e-13 67.8
Msa0021510 AT2G29890.5 51.667 60 29 0 175 234 850 909 8.48e-13 67.8
Msa0021510 AT2G29890.4 51.667 60 29 0 175 234 833 892 8.69e-13 67.8
Msa0021510 AT2G29890.2 51.667 60 29 0 175 234 852 911 8.81e-13 67.8
Msa0021510 AT5G57320.2 52.459 61 29 0 174 234 902 962 1.06e-12 67.4
Msa0021510 AT5G57320.1 52.459 61 29 0 174 234 902 962 1.06e-12 67.4
Msa0021510 AT2G29890.3 51.667 60 29 0 175 234 874 933 1.07e-12 67.4

Find 70 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTGCTACTGAAAATTATT+TGG 0.157865 1_1:-38426731 Msa0021510:three_prime_UTR
AGAACTAAATGCGGAGTTTA+AGG 0.252036 1_1:+38428525 None:intergenic
GTTCCAGAGAGTAGCATTTC+AGG 0.273762 1_1:-38428352 Msa0021510:intron
CTTGAAATGCACTTACCTAT+TGG 0.281130 1_1:-38427003 Msa0021510:three_prime_UTR
TCCAAGTAGCAGCAATTAAA+AGG 0.290157 1_1:+38426906 None:intergenic
AAAATCTTCGTCTGAAAGAT+AGG 0.326812 1_1:+38427177 None:intergenic
ACTCCTAGGCCATCTGTAAA+AGG 0.329533 1_1:-38428481 Msa0021510:CDS
GCTGCTAAAGCCCTTGCTTT+AGG 0.359579 1_1:-38426853 Msa0021510:three_prime_UTR
CTCCTGATTCCGATAGCAAT+GGG 0.368283 1_1:-38427535 Msa0021510:CDS
CTCTTTGTCTTGGTCCTCCA+TGG 0.382592 1_1:+38428563 None:intergenic
AAAGCTTCTGCCCTTTGTCT+TGG 0.386736 1_1:+38429039 None:intergenic
GGCTTTAGCAGCCTTACCTT+GGG 0.387652 1_1:+38426864 None:intergenic
GCTTGAGAAAACAACGAGTA+TGG 0.390812 1_1:-38428986 Msa0021510:intron
TTTCTTTCATTTGGTTAGAA+AGG 0.393954 1_1:-38426615 Msa0021510:three_prime_UTR
AAGACAAAGGGCAGAAGCTT+TGG 0.411602 1_1:-38429037 Msa0021510:CDS
AGAAACTTCTTCCACTTCCT+TGG 0.413003 1_1:+38427556 None:intergenic
TGAAAATTATTTGGCAACAT+TGG 0.421157 1_1:-38426722 Msa0021510:three_prime_UTR
GATAAAACACACTATCCAAT+AGG 0.431709 1_1:+38426988 None:intergenic
GGGCTTTAGCAGCCTTACCT+TGG 0.431888 1_1:+38426863 None:intergenic
TGTCTAGGATTGATCTTAAA+CGG 0.444135 1_1:-38427409 Msa0021510:CDS
CTTTCATTTGGTTAGAAAGG+TGG 0.445488 1_1:-38426612 Msa0021510:three_prime_UTR
AGCAGGTCTCGCTTCCATCT+TGG 0.446014 1_1:+38427112 None:intergenic
TTTCATTTGGTTAGAAAGGT+GGG 0.446113 1_1:-38426611 None:intergenic
CTGGCCACAGGAGAGGTATC+AGG 0.449973 1_1:+38428385 None:intergenic
AAAGCTTCCGCTCTTTGTCT+TGG 0.456698 1_1:+38428553 None:intergenic
GCAATGAAGACACTAGAAAC+TGG 0.458038 1_1:-38426686 Msa0021510:three_prime_UTR
GATCAATTAAAGACTACATC+AGG 0.462111 1_1:-38427440 Msa0021510:CDS
ATCAAACGGGTCAAGTGGAG+GGG 0.466560 1_1:-38429064 Msa0021510:CDS
CAACATTGGCTTACATATTG+TGG 0.467248 1_1:-38426708 Msa0021510:three_prime_UTR
CAGTCACAAGAGAGATTGAA+TGG 0.470209 1_1:-38428592 Msa0021510:CDS
TCAAACGGGTCAAGTGGAGG+GGG 0.482923 1_1:-38429063 Msa0021510:CDS
GAAATGCTACTCTCTGGAAC+AGG 0.494243 1_1:+38428355 None:intergenic
GCTTATTGATTACCTTTCCT+CGG 0.496574 1_1:-38427030 Msa0021510:three_prime_UTR
TTACCTGAAATGCTACTCTC+TGG 0.510871 1_1:+38428349 None:intergenic
CAACAAAGAAAGTTACTCCT+AGG 0.511920 1_1:-38428495 Msa0021510:CDS
CTCTGGAACAGGACTGTCAC+TGG 0.517307 1_1:+38428366 None:intergenic
AGCTACAGAAGCCAAGGAAG+TGG 0.518580 1_1:-38427567 Msa0021510:CDS
GGAATCTGAACAAGAATATG+TGG 0.523447 1_1:-38427507 Msa0021510:CDS
AATCAAACGGGTCAAGTGGA+GGG 0.527463 1_1:-38429065 Msa0021510:CDS
TGATGAAGCTACAGAAGCCA+AGG 0.540644 1_1:-38427573 Msa0021510:CDS
TTAGCAGCCTTACCTTGGGT+CGG 0.552163 1_1:+38426868 None:intergenic
TGAATGTCCTCTGACTACTT+TGG 0.561085 1_1:+38427468 None:intergenic
GAACAAGAATATGTGGAGGA+TGG 0.562270 1_1:-38427500 Msa0021510:CDS
ATCACAGCCGACCCAAGGTA+AGG 0.562716 1_1:-38426875 Msa0021510:three_prime_UTR
AAATCAAACGGGTCAAGTGG+AGG 0.563964 1_1:-38429066 Msa0021510:CDS
AGATTGAATGGCTTAAACCA+TGG 0.565932 1_1:-38428580 Msa0021510:CDS
TCTCCTGATTCCGATAGCAA+TGG 0.567747 1_1:-38427536 Msa0021510:CDS
ATGTTGGTAGGCCTAAAGCA+AGG 0.573624 1_1:+38426842 None:intergenic
ATTTCAAGATTACCGAGGAA+AGG 0.583369 1_1:+38427018 None:intergenic
ACAGGACTGTCACTGGCCAC+AGG 0.587561 1_1:+38428373 None:intergenic
TGTTGGTAGGCCTAAAGCAA+GGG 0.593197 1_1:+38426843 None:intergenic
GATTGATCTTAAACGGAGAG+AGG 0.596333 1_1:-38427402 Msa0021510:intron
AGGCCATCTGTAAAAGGTCA+AGG 0.608414 1_1:-38428475 Msa0021510:CDS
CGTCAGTTCTTACTGCTGAG+AGG 0.621045 1_1:-38428420 Msa0021510:CDS
TGAAGACACTAGAAACTGGA+CGG 0.624728 1_1:-38426682 Msa0021510:three_prime_UTR
CCTGATTCCGATAGCAATGG+GGG 0.624831 1_1:-38427533 Msa0021510:CDS
GAAGACACTAGAAACTGGAC+GGG 0.627885 1_1:-38426681 Msa0021510:three_prime_UTR
TTTACATCACAGCCGACCCA+AGG 0.630377 1_1:-38426880 Msa0021510:three_prime_UTR
ATATGAACAGTGATGCTGCA+TGG 0.634125 1_1:-38426947 Msa0021510:three_prime_UTR
ACTGTCACTGGCCACAGGAG+AGG 0.635142 1_1:+38428378 None:intergenic
TCCTGATTCCGATAGCAATG+GGG 0.635451 1_1:-38427534 Msa0021510:CDS
TGGAGGACCAAGACAAAGAG+CGG 0.641857 1_1:-38428560 Msa0021510:CDS
CAAACGGGTCAAGTGGAGGG+GGG 0.658548 1_1:-38429062 Msa0021510:CDS
ATCACCTGATACCTCTCCTG+TGG 0.671050 1_1:-38428389 Msa0021510:CDS
ACTGTTCATATGAATCCAAG+CGG 0.671682 1_1:+38426959 None:intergenic
ATAATGACCAAAGTAGTCAG+AGG 0.681044 1_1:-38427475 Msa0021510:CDS
AGTGCATTTCAAGATTACCG+AGG 0.698250 1_1:+38427013 None:intergenic
TGTTGATGAAGAACTAAATG+CGG 0.703179 1_1:+38428516 None:intergenic
ATCTGAACAAGAATATGTGG+AGG 0.712418 1_1:-38427504 Msa0021510:CDS
TTGAATGGCTTAAACCATGG+AGG 0.721883 1_1:-38428577 Msa0021510:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAACTTTAGAATATTATAA+AGG + chr1_1:38426942-38426961 None:intergenic 10.0%
!!! TTTTTTTCATTTTGTTTTTT+TGG - chr1_1:38427582-38427601 Msa0021510:CDS 10.0%
!!! ATTAGATTTTATAAACAAAA+AGG - chr1_1:38429445-38429464 Msa0021510:intron 10.0%
!!! AAAGTAAATTTTTATATATG+GGG + chr1_1:38429493-38429512 None:intergenic 10.0%
!!! TTTATTTAGCTTTGAATTTT+AGG - chr1_1:38426757-38426776 Msa0021510:three_prime_UTR 15.0%
!!! CATTTTTGTATATATTTGAA+GGG + chr1_1:38426885-38426904 None:intergenic 15.0%
!! CAATTGTTTAATTATTTCAA+TGG - chr1_1:38428338-38428357 Msa0021510:intron 15.0%
!! AAAAAGATTTAATAAAGTCA+GGG + chr1_1:38428927-38428946 None:intergenic 15.0%
!! TAAAAAGATTTAATAAAGTC+AGG + chr1_1:38428928-38428947 None:intergenic 15.0%
!! AAAAATAATTTAATGTTGGT+AGG + chr1_1:38429424-38429443 None:intergenic 15.0%
!! AAAGCTAAATAAACAGAAAA+AGG + chr1_1:38426750-38426769 None:intergenic 20.0%
!!! GCATTTTTGTATATATTTGA+AGG + chr1_1:38426886-38426905 None:intergenic 20.0%
!! AGAAAATAAATATTGGAAGA+TGG + chr1_1:38427016-38427035 None:intergenic 20.0%
!! TCGAGAAAGAAAATAAATAT+TGG + chr1_1:38427023-38427042 None:intergenic 20.0%
!! TTTAAGAATATTATTGTTGC+TGG - chr1_1:38427385-38427404 Msa0021510:intron 20.0%
!!! TTTCATTTTGTTTTTTTGGT+AGG - chr1_1:38427586-38427605 Msa0021510:CDS 20.0%
!!! TTTTTGCAACAAATAGAATA+TGG + chr1_1:38427986-38428005 None:intergenic 20.0%
!! GTAATAATCGAATAAACTAT+AGG - chr1_1:38428495-38428514 Msa0021510:CDS 20.0%
!! AAAAGATTTAATAAAGTCAG+GGG + chr1_1:38428926-38428945 None:intergenic 20.0%
!!! TAAATCTTTTTAACTCTTTG+TGG - chr1_1:38428936-38428955 Msa0021510:intron 20.0%
!!! AAATCTTTTTAACTCTTTGT+GGG - chr1_1:38428937-38428956 Msa0021510:intron 20.0%
!!! AAGTTTGTATTTTAAATACG+TGG - chr1_1:38429611-38429630 Msa0021510:intron 20.0%
!! GATCATGTTTACTTCATTTT+TGG + chr1_1:38426624-38426643 None:intergenic 25.0%
! CTAAATAAACAGAAAAAGGA+AGG + chr1_1:38426746-38426765 None:intergenic 25.0%
! TTAAGAATACAGCACATAAT+AGG + chr1_1:38427544-38427563 None:intergenic 25.0%
! CCTAATTTACTTAGAGAATA+AGG + chr1_1:38428159-38428178 None:intergenic 25.0%
! CCTTATTCTCTAAGTAAATT+AGG - chr1_1:38428156-38428175 Msa0021510:intron 25.0%
! TTATATAGAGTTAAGTAGCT+TGG + chr1_1:38428232-38428251 None:intergenic 25.0%
! TGATGTAATTTATTTGACCA+TGG + chr1_1:38428376-38428395 None:intergenic 25.0%
! TCAAATAAATTACATCAGAG+TGG - chr1_1:38428379-38428398 Msa0021510:CDS 25.0%
! TTCTTCTCTTCAAATTCAAA+AGG + chr1_1:38428468-38428487 None:intergenic 25.0%
!!! ATTCATATTTCTTTTTCAGC+AGG + chr1_1:38429159-38429178 None:intergenic 25.0%
!! ACTTGCTACTGAAAATTATT+TGG - chr1_1:38429520-38429539 Msa0021510:intron 25.0%
! TGAAAATTATTTGGCAACAT+TGG - chr1_1:38429529-38429548 Msa0021510:intron 25.0%
! TTTCTTTCATTTGGTTAGAA+AGG - chr1_1:38429636-38429655 Msa0021510:intron 25.0%
! TTTAAGCACTGCAATTGATA+TGG - chr1_1:38426671-38426690 Msa0021510:three_prime_UTR 30.0%
ATATATTTGAAGGGCTATGA+AGG + chr1_1:38426876-38426895 None:intergenic 30.0%
TGGACATTTAGAAATACTGT+TGG + chr1_1:38426996-38427015 None:intergenic 30.0%
! AAATAAGGCTCAATTGATTC+TGG - chr1_1:38427153-38427172 Msa0021510:CDS 30.0%
! CATTCCTTTTTGTATGTGAA+TGG - chr1_1:38427322-38427341 Msa0021510:intron 30.0%
TGATCCATTCACATACAAAA+AGG + chr1_1:38427329-38427348 None:intergenic 30.0%
TTTGTGGATCAATCAATTGT+TGG - chr1_1:38427475-38427494 Msa0021510:CDS 30.0%
GATCAATCAATTGTTGGATT+CGG - chr1_1:38427481-38427500 Msa0021510:CDS 30.0%
AGAAATGGTTGAATGAAAAG+AGG - chr1_1:38427510-38427529 Msa0021510:CDS 30.0%
ATACAGCACATAATAGGATT+TGG + chr1_1:38427538-38427557 None:intergenic 30.0%
!!! TTTTGTTTTTTTGGTAGGAC+TGG - chr1_1:38427591-38427610 Msa0021510:CDS 30.0%
! TGTTGATGAAGAACTAAATG+CGG + chr1_1:38427738-38427757 None:intergenic 30.0%
AAAAGATTTACACAGACTGT+TGG + chr1_1:38428047-38428066 None:intergenic 30.0%
!!! GTCTGTGTAAATCTTTTTTG+TGG - chr1_1:38428050-38428069 Msa0021510:intron 30.0%
!! AAATTCAAAAGGCACTCAAT+AGG + chr1_1:38428457-38428476 None:intergenic 30.0%
GATCAATTAAAGACTACATC+AGG - chr1_1:38428811-38428830 Msa0021510:intron 30.0%
! TGTCTAGGATTGATCTTAAA+CGG - chr1_1:38428842-38428861 Msa0021510:intron 30.0%
TGCAATCTTTCAAATTGTCA+TGG - chr1_1:38428972-38428991 Msa0021510:intron 30.0%
AATGCATATGATTTCTTGTC+TGG - chr1_1:38428995-38429014 Msa0021510:CDS 30.0%
AAAATCTTCGTCTGAAAGAT+AGG + chr1_1:38429077-38429096 None:intergenic 30.0%
!!! GAAGATTTTGAAACTGTGTT+TGG - chr1_1:38429088-38429107 Msa0021510:intron 30.0%
!!! TTTTGAAACTGTGTTTGGAA+TGG - chr1_1:38429093-38429112 Msa0021510:intron 30.0%
! CATTTTATAAGTTGCCAAGA+TGG - chr1_1:38429125-38429144 Msa0021510:intron 30.0%
GATAAAACACACTATCCAAT+AGG + chr1_1:38429266-38429285 None:intergenic 30.0%
! ATAATTTTCAGTAGCAAGTG+AGG + chr1_1:38429519-38429538 None:intergenic 30.0%
! TACGTGGTTTTTCTTTCATT+TGG - chr1_1:38429627-38429646 Msa0021510:intron 30.0%
AACGAGACAGAAATTTACAC+TGG + chr1_1:38426653-38426672 None:intergenic 35.0%
!! TCAATTGAGCCTTATTTAGC+AGG + chr1_1:38427150-38427169 None:intergenic 35.0%
TGGTGACAGGAAAAATCAAA+CGG - chr1_1:38427173-38427192 Msa0021510:CDS 35.0%
AGAAAACAACGAGTATGGTA+TGG - chr1_1:38427270-38427289 Msa0021510:intron 35.0%
CAATTGATTGATCCACAAAG+AGG + chr1_1:38427474-38427493 None:intergenic 35.0%
TGGATTCGGAAAAAGAGAAA+TGG - chr1_1:38427495-38427514 Msa0021510:CDS 35.0%
AGATTGAATGGCTTAAACCA+TGG - chr1_1:38427671-38427690 Msa0021510:intron 35.0%
AGAACTAAATGCGGAGTTTA+AGG + chr1_1:38427729-38427748 None:intergenic 35.0%
CAACAAAGAAAGTTACTCCT+AGG - chr1_1:38427756-38427775 Msa0021510:intron 35.0%
CATACTCAAATTTCAACCAC+TGG - chr1_1:38427959-38427978 Msa0021510:intron 35.0%
ACAAATAGAATATGGACCAG+TGG + chr1_1:38427978-38427997 None:intergenic 35.0%
! AATGGCTAGTATTTTGTCCA+TGG - chr1_1:38428356-38428375 Msa0021510:CDS 35.0%
! CTATAACGCGCTAATTTTTG+TGG - chr1_1:38428412-38428431 Msa0021510:CDS 35.0%
GTGTTTACACAACCATTTCT+GGG - chr1_1:38428585-38428604 Msa0021510:CDS 35.0%
!!! TTTCGGCTTATTTTACCAGT+TGG - chr1_1:38428610-38428629 Msa0021510:intron 35.0%
GGAATCTGAACAAGAATATG+TGG - chr1_1:38428744-38428763 Msa0021510:intron 35.0%
ATCTGAACAAGAATATGTGG+AGG - chr1_1:38428747-38428766 Msa0021510:intron 35.0%
ATAATGACCAAAGTAGTCAG+AGG - chr1_1:38428776-38428795 Msa0021510:intron 35.0%
CATCAGGAAAAAATGTGTCT+AGG - chr1_1:38428827-38428846 Msa0021510:intron 35.0%
! GCTTATTGATTACCTTTCCT+CGG - chr1_1:38429221-38429240 Msa0021510:intron 35.0%
ATTTCAAGATTACCGAGGAA+AGG + chr1_1:38429236-38429255 None:intergenic 35.0%
CTTGAAATGCACTTACCTAT+TGG - chr1_1:38429248-38429267 Msa0021510:intron 35.0%
! TGTTTTATCGATAAACCGCT+TGG - chr1_1:38429277-38429296 Msa0021510:intron 35.0%
ACTGTTCATATGAATCCAAG+CGG + chr1_1:38429295-38429314 None:intergenic 35.0%
!! TCCTTTTAATTGCTGCTACT+TGG - chr1_1:38429344-38429363 Msa0021510:intron 35.0%
TCCAAGTAGCAGCAATTAAA+AGG + chr1_1:38429348-38429367 None:intergenic 35.0%
!! CAACATTGGCTTACATATTG+TGG - chr1_1:38429543-38429562 Msa0021510:intron 35.0%
CACGTAACATACACAACTAC+TGG + chr1_1:38426801-38426820 None:intergenic 40.0%
ATGTCTCGACCTGCTAAATA+AGG - chr1_1:38427138-38427157 Msa0021510:CDS 40.0%
GGTGACAGGAAAAATCAAAC+GGG - chr1_1:38427174-38427193 Msa0021510:CDS 40.0%
GAAAAATCAAACGGGTCAAG+TGG - chr1_1:38427182-38427201 Msa0021510:intron 40.0%
GCTTGAGAAAACAACGAGTA+TGG - chr1_1:38427265-38427284 Msa0021510:intron 40.0%
!! ATTGTTGCTGGTTCTATCTG+TGG - chr1_1:38427397-38427416 Msa0021510:intron 40.0%
!! TTGTTGCTGGTTCTATCTGT+GGG - chr1_1:38427398-38427417 Msa0021510:intron 40.0%
AATGGCTTAGAAGGCAGAAT+GGG + chr1_1:38427441-38427460 None:intergenic 40.0%
CAGTCACAAGAGAGATTGAA+TGG - chr1_1:38427659-38427678 Msa0021510:intron 40.0%
TTGAATGGCTTAAACCATGG+AGG - chr1_1:38427674-38427693 Msa0021510:intron 40.0%
! GATCCTTGACCTTTTACAGA+TGG + chr1_1:38427782-38427801 None:intergenic 40.0%
TTACCTGAAATGCTACTCTC+TGG + chr1_1:38427905-38427924 None:intergenic 40.0%
! GTGGATACCTTTAAAAACCC+TGG - chr1_1:38428431-38428450 Msa0021510:CDS 40.0%
! CAATAGGCCAGGGTTTTTAA+AGG + chr1_1:38428441-38428460 None:intergenic 40.0%
TTGCCTATGAAGATTCCTCT+AGG + chr1_1:38428533-38428552 None:intergenic 40.0%
GAGGAATCTTCATAGGCAAT+AGG - chr1_1:38428534-38428553 Msa0021510:CDS 40.0%
CGTGTTTACACAACCATTTC+TGG - chr1_1:38428584-38428603 Msa0021510:CDS 40.0%
! ACAACCATTTCTGGGTGTTT+CGG - chr1_1:38428593-38428612 Msa0021510:intron 40.0%
AGAAACTTCTTCCACTTCCT+TGG + chr1_1:38428698-38428717 None:intergenic 40.0%
GAACAAGAATATGTGGAGGA+TGG - chr1_1:38428751-38428770 Msa0021510:intron 40.0%
TGAATGTCCTCTGACTACTT+TGG + chr1_1:38428786-38428805 None:intergenic 40.0%
GATTGATCTTAAACGGAGAG+AGG - chr1_1:38428849-38428868 Msa0021510:intron 40.0%
GATTTAATAAAGTCAGGGGC+AGG + chr1_1:38428922-38428941 None:intergenic 40.0%
AGTGCATTTCAAGATTACCG+AGG + chr1_1:38429241-38429260 None:intergenic 40.0%
ATATGAACAGTGATGCTGCA+TGG - chr1_1:38429304-38429323 Msa0021510:intron 40.0%
GCAATGAAGACACTAGAAAC+TGG - chr1_1:38429565-38429584 Msa0021510:intron 40.0%
TGAAGACACTAGAAACTGGA+CGG - chr1_1:38429569-38429588 Msa0021510:intron 40.0%
! GCTCAATTGATTCTGGTGAC+AGG - chr1_1:38427160-38427179 Msa0021510:CDS 45.0%
AAATCAAACGGGTCAAGTGG+AGG - chr1_1:38427185-38427204 Msa0021510:intron 45.0%
AATCAAACGGGTCAAGTGGA+GGG - chr1_1:38427186-38427205 Msa0021510:intron 45.0%
AAAGCTTCTGCCCTTTGTCT+TGG + chr1_1:38427215-38427234 None:intergenic 45.0%
AAGACAAAGGGCAGAAGCTT+TGG - chr1_1:38427214-38427233 Msa0021510:intron 45.0%
!! CTGGTTCTATCTGTGGGATT+TGG - chr1_1:38427404-38427423 Msa0021510:CDS 45.0%
GAATGGCTTAGAAGGCAGAA+TGG + chr1_1:38427442-38427461 None:intergenic 45.0%
GAGGTTGTGAATGGCTTAGA+AGG + chr1_1:38427450-38427469 None:intergenic 45.0%
CAAAGAGGAGAGGTTGTGAA+TGG + chr1_1:38427459-38427478 None:intergenic 45.0%
TTCACAACCTCTCCTCTTTG+TGG - chr1_1:38427459-38427478 Msa0021510:CDS 45.0%
GATTGATCCACAAAGAGGAG+AGG + chr1_1:38427469-38427488 None:intergenic 45.0%
AAAGCTTCCGCTCTTTGTCT+TGG + chr1_1:38427701-38427720 None:intergenic 45.0%
ACTCCTAGGCCATCTGTAAA+AGG - chr1_1:38427770-38427789 Msa0021510:intron 45.0%
! TGACCTTTTACAGATGGCCT+AGG + chr1_1:38427776-38427795 None:intergenic 45.0%
AGGCCATCTGTAAAAGGTCA+AGG - chr1_1:38427776-38427795 Msa0021510:intron 45.0%
!! GAAATGCTACTCTCTGGAAC+AGG + chr1_1:38427899-38427918 None:intergenic 45.0%
GTTCCAGAGAGTAGCATTTC+AGG - chr1_1:38427899-38427918 Msa0021510:intron 45.0%
! CGTAGTGCTATTCAGTCACA+CGG - chr1_1:38428261-38428280 Msa0021510:intron 45.0%
!! AAAAGGCACTCAATAGGCCA+GGG + chr1_1:38428451-38428470 None:intergenic 45.0%
! AGGCTTTTACTTCCACCTAG+AGG - chr1_1:38428515-38428534 Msa0021510:CDS 45.0%
CCTATGAAGATTCCTCTAGG+TGG + chr1_1:38428530-38428549 None:intergenic 45.0%
CCACCTAGAGGAATCTTCAT+AGG - chr1_1:38428527-38428546 Msa0021510:CDS 45.0%
TGGTTGTGTAAACACGAGTC+AGG + chr1_1:38428580-38428599 None:intergenic 45.0%
TAAGCCGAAACACCCAGAAA+TGG + chr1_1:38428600-38428619 None:intergenic 45.0%
TCTGCAGCAAAAACACCAAC+TGG + chr1_1:38428628-38428647 None:intergenic 45.0%
TGATGAAGCTACAGAAGCCA+AGG - chr1_1:38428678-38428697 Msa0021510:intron 45.0%
TCTCCTGATTCCGATAGCAA+TGG - chr1_1:38428715-38428734 Msa0021510:intron 45.0%
CTCCTGATTCCGATAGCAAT+GGG - chr1_1:38428716-38428735 Msa0021510:intron 45.0%
TCCTGATTCCGATAGCAATG+GGG - chr1_1:38428717-38428736 Msa0021510:intron 45.0%
TCAGGGGCAGGAAAATTCAT+GGG + chr1_1:38428910-38428929 None:intergenic 45.0%
GCATAATCTCCACTTCCTGT+TGG - chr1_1:38429046-38429065 Msa0021510:CDS 45.0%
! TGTTGGTAGGCCTAAAGCAA+GGG + chr1_1:38429411-38429430 None:intergenic 45.0%
! ATGTTGGTAGGCCTAAAGCA+AGG + chr1_1:38429412-38429431 None:intergenic 45.0%
GAAGACACTAGAAACTGGAC+GGG - chr1_1:38429570-38429589 Msa0021510:intron 45.0%
!! AAAAAAATAAAAAAATACAA+TGG - chr1_1:38428002-38428021 Msa0021510:intron 5.0%
!! AAAAAATAAAAAAATACAAT+GGG - chr1_1:38428003-38428022 Msa0021510:intron 5.0%
!! AATAAAAAATAATTTAATGT+TGG + chr1_1:38429428-38429447 None:intergenic 5.0%
!!! TAAAGTAAATTTTTATATAT+GGG + chr1_1:38429494-38429513 None:intergenic 5.0%
!!! TTAAAGTAAATTTTTATATA+TGG + chr1_1:38429495-38429514 None:intergenic 5.0%
ATCAAACGGGTCAAGTGGAG+GGG - chr1_1:38427187-38427206 Msa0021510:intron 50.0%
CTCTCTTGTGACTGCAAGAG+TGG + chr1_1:38427653-38427672 None:intergenic 50.0%
CTCTTTGTCTTGGTCCTCCA+TGG + chr1_1:38427691-38427710 None:intergenic 50.0%
TGGAGGACCAAGACAAAGAG+CGG - chr1_1:38427691-38427710 Msa0021510:intron 50.0%
CGTCAGTTCTTACTGCTGAG+AGG - chr1_1:38427831-38427850 Msa0021510:intron 50.0%
ATCACCTGATACCTCTCCTG+TGG - chr1_1:38427862-38427881 Msa0021510:intron 50.0%
!! CAAAAGGCACTCAATAGGCC+AGG + chr1_1:38428452-38428471 None:intergenic 50.0%
AGCTACAGAAGCCAAGGAAG+TGG - chr1_1:38428684-38428703 Msa0021510:intron 50.0%
CCTGATTCCGATAGCAATGG+GGG - chr1_1:38428718-38428737 Msa0021510:intron 50.0%
TTCCAGACCCCCATTGCTAT+CGG + chr1_1:38428728-38428747 None:intergenic 50.0%
GTCAGGGGCAGGAAAATTCA+TGG + chr1_1:38428911-38428930 None:intergenic 50.0%
ATCTCCACTTCCTGTTGGTC+AGG - chr1_1:38429051-38429070 Msa0021510:CDS 50.0%
GAAAGATAGGCCTGACCAAC+AGG + chr1_1:38429064-38429083 None:intergenic 50.0%
TTTACATCACAGCCGACCCA+AGG - chr1_1:38429371-38429390 Msa0021510:intron 50.0%
TTAGCAGCCTTACCTTGGGT+CGG + chr1_1:38429386-38429405 None:intergenic 50.0%
! GGCTTTAGCAGCCTTACCTT+GGG + chr1_1:38429390-38429409 None:intergenic 50.0%
GCTGCTAAAGCCCTTGCTTT+AGG - chr1_1:38429398-38429417 Msa0021510:intron 50.0%
TCAAACGGGTCAAGTGGAGG+GGG - chr1_1:38427188-38427207 Msa0021510:intron 55.0%
GAAGGCAGAATGGGCATGAG+AGG + chr1_1:38427432-38427451 None:intergenic 55.0%
!! CTCTGGAACAGGACTGTCAC+TGG + chr1_1:38427888-38427907 None:intergenic 55.0%
CCCCCATTGCTATCGGAATC+AGG + chr1_1:38428721-38428740 None:intergenic 55.0%
TTCCGATAGCAATGGGGGTC+TGG - chr1_1:38428723-38428742 Msa0021510:intron 55.0%
GGGGCAGGAAAATTCATGGG+AGG + chr1_1:38428907-38428926 None:intergenic 55.0%
TAGGCCTGACCAACAGGAAG+TGG + chr1_1:38429058-38429077 None:intergenic 55.0%
AGCAGGTCTCGCTTCCATCT+TGG + chr1_1:38429142-38429161 None:intergenic 55.0%
ATCACAGCCGACCCAAGGTA+AGG - chr1_1:38429376-38429395 Msa0021510:intron 55.0%
! GGGCTTTAGCAGCCTTACCT+TGG + chr1_1:38429391-38429410 None:intergenic 55.0%
CAAACGGGTCAAGTGGAGGG+GGG - chr1_1:38427189-38427208 Msa0021510:intron 60.0%
TGGAGGGGGGCCAAGACAAA+GGG - chr1_1:38427202-38427221 Msa0021510:intron 60.0%
!! CTGGCCACAGGAGAGGTATC+AGG + chr1_1:38427869-38427888 None:intergenic 60.0%
ACTGTCACTGGCCACAGGAG+AGG + chr1_1:38427876-38427895 None:intergenic 60.0%
ACAGGACTGTCACTGGCCAC+AGG + chr1_1:38427881-38427900 None:intergenic 60.0%
GTGGAGGGGGGCCAAGACAA+AGG - chr1_1:38427201-38427220 Msa0021510:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 38426612 38429661 38426612 ID=Msa0021510;Name=Msa0021510
chr1_1 mRNA 38426612 38429661 38426612 ID=Msa0021510-mRNA-1;Parent=Msa0021510;Name=Msa0021510-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|0.75|0.6|0.8|1|1|5|475|234
chr1_1 exon 38426612 38427200 38426612 ID=Msa0021510-mRNA-1:exon:11881;Parent=Msa0021510-mRNA-1
chr1_1 exon 38427403 38427626 38427403 ID=Msa0021510-mRNA-1:exon:11880;Parent=Msa0021510-mRNA-1
chr1_1 exon 38428353 38428611 38428353 ID=Msa0021510-mRNA-1:exon:11879;Parent=Msa0021510-mRNA-1
chr1_1 exon 38428987 38429091 38428987 ID=Msa0021510-mRNA-1:exon:11878;Parent=Msa0021510-mRNA-1
chr1_1 exon 38429659 38429661 38429659 ID=Msa0021510-mRNA-1:exon:11877;Parent=Msa0021510-mRNA-1
chr1_1 CDS 38429659 38429661 38429659 ID=Msa0021510-mRNA-1:cds;Parent=Msa0021510-mRNA-1
chr1_1 CDS 38428987 38429091 38428987 ID=Msa0021510-mRNA-1:cds;Parent=Msa0021510-mRNA-1
chr1_1 CDS 38428353 38428611 38428353 ID=Msa0021510-mRNA-1:cds;Parent=Msa0021510-mRNA-1
chr1_1 CDS 38427403 38427626 38427403 ID=Msa0021510-mRNA-1:cds;Parent=Msa0021510-mRNA-1
chr1_1 CDS 38427087 38427200 38427087 ID=Msa0021510-mRNA-1:cds;Parent=Msa0021510-mRNA-1
chr1_1 three_prime_UTR 38426612 38427086 38426612 ID=Msa0021510-mRNA-1:three_prime_utr;Parent=Msa0021510-mRNA-1
Gene Sequence

>Msa0021510

ATGGAAAAATCAAACGGGTCAAGTGGAGGGGGGCCAAGACAAAGGGCAGAAGCTTTGGCTGCTTTAACTTCTGCTTTTAAATCATCGCTTGAGAAAACAACGAGTATGTCACAAGAGAGATTGAATGGCTTAAACCATGGAGGACCAAGACAAAGAGCGGAAGCTTTAGCTGCCTTAAACTCCGCATTTAGTTCTTCATCAACAACAAAGAAAGTTACTCCTAGGCCATCTGTAAAAGGTCAAGGATCACAAAGAGCAGCAGCTGTAGCTGCTCTTTCGTCAGTTCTTACTGCTGAGAGGAAGAAACAATCACCTGATACCTCTCCTGTGGCCAGTGACAGTCCTGTTCCAGAGAGTAGCATTTCAGAAGCTAAAAGTGAAAGTGAATATTCTGAAGTTGATGAAGCTACAGAAGCCAAGGAAGTGGAAGAAGTTTCTCCTGATTCCGATAGCAATGGGGGTCTGGAATCTGAACAAGAATATGTGGAGGATGGAGATAATGACCAAAGTAGTCAGAGGACATTCAGTTATGATCAATTAAAGACTACATCAGGAAAAAATGTGTCTAGGATTGATCTTAAACGGAGAGAGGCCTATCTTTCAGACGAAGATTTTGAAACTGTGTTTGGAATGGTAAAAGAAGCATTTTATAAGTTGCCAAGATGGAAGCGAGACCTGCTGAAAAAGAAATATGAATTGTTCTAG

Protein sequence

>Msa0021510

MEKSNGSSGGGPRQRAEALAALTSAFKSSLEKTTSMSQERLNGLNHGGPRQRAEALAALNSAFSSSSTTKKVTPRPSVKGQGSQRAAAVAALSSVLTAERKKQSPDTSPVASDSPVPESSISEAKSESEYSEVDEATEAKEVEEVSPDSDSNGGLESEQEYVEDGDNDQSSQRTFSYDQLKTTSGKNVSRIDLKRREAYLSDEDFETVFGMVKEAFYKLPRWKRDLLKKKYELF*