AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0871270


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0871270 MtrunA17_Chr6g0454081 99.194 124 1 0 11 134 45 168 6.04e-88 253
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0871270 AT3G29280.1 66.667 132 42 1 1 130 43 174 1.06e-62 190
Msa0871270 AT3G29280.2 62.411 141 42 2 1 130 43 183 1.41e-59 182

Find 43 sgRNAs with CRISPR-Local

Find 159 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAATTTCTGGGCTGGATTT+TGG 0.147980 6_1:+6171421 Msa0871270:CDS
GTTGGAAAGATGACAATTTC+TGG 0.233986 6_1:+6171409 Msa0871270:CDS
TATTTAACTTAATAGCTTAA+TGG 0.248649 6_1:-6171501 None:intergenic
ATTTAACTTAATAGCTTAAT+GGG 0.305991 6_1:-6171500 None:intergenic
GCATCCATCCCAGCTAGTTT+TGG 0.340791 6_1:-6170988 None:intergenic
CGAGCACGTGTTTCTATTCC+AGG 0.350155 6_1:-6171605 None:intergenic
CACAGGTATGGTTGAACAAA+AGG 0.398980 6_1:+6170879 Msa0871270:CDS
AAGTTCATGCCAAAACTAGC+TGG 0.442466 6_1:+6170979 Msa0871270:CDS
TTGGAAAGATGACAATTTCT+GGG 0.446900 6_1:+6171410 Msa0871270:CDS
CAACAAGGTAGCATACTAAA+GGG 0.454707 6_1:-6170183 None:intergenic
ATGCAGCTGAAGACCACATC+AGG 0.457770 6_1:+6170956 Msa0871270:CDS
CAAAATTACTGTAAAGAGAA+TGG 0.458889 6_1:-6170252 None:intergenic
TCAACAAGGTAGCATACTAA+AGG 0.472790 6_1:-6170184 None:intergenic
GTGCGAAAGGGAATGCAGTA+AGG 0.476356 6_1:+6170348 Msa0871270:CDS
AAAGATGACAATTTCTGGGC+TGG 0.478819 6_1:+6171414 Msa0871270:CDS
CACTGCATTGATCATGCTCA+TGG 0.480055 6_1:+6170551 Msa0871270:CDS
TTGAATTATGCAGTTAACGT+TGG 0.489090 6_1:+6171391 Msa0871270:intron
AAACTATTCTGTAGAAAGGT+AGG 0.495438 6_1:+6171556 Msa0871270:three_prime_UTR
ACGTGCTCGTCACTTATTGA+AGG 0.495937 6_1:+6171619 Msa0871270:three_prime_UTR
ATTGAATAATTACTTACGTA+TGG 0.499164 6_1:+6170291 Msa0871270:exon
GCAGTAAGGGTGAGGACTAT+CGG 0.514678 6_1:+6170362 Msa0871270:CDS
TAGAAAACTATTCTGTAGAA+AGG 0.514941 6_1:+6171552 Msa0871270:three_prime_UTR
TTGGCATGAACTTCCTGATG+TGG 0.518276 6_1:-6170969 None:intergenic
TGAAAGAATTGGAGTGCGAA+AGG 0.552769 6_1:+6170335 Msa0871270:CDS
CATGCCAAAACTAGCTGGGA+TGG 0.557559 6_1:+6170984 Msa0871270:CDS
GGTATGGTTGAACAAAAGGA+TGG 0.563367 6_1:+6170883 Msa0871270:CDS
GGATAAGGAGATCACAGGTA+TGG 0.582254 6_1:+6170867 Msa0871270:CDS
GAAAGAATTGGAGTGCGAAA+GGG 0.583284 6_1:+6170336 Msa0871270:CDS
AAGGGAATGCAGTAAGGGTG+AGG 0.592308 6_1:+6170354 Msa0871270:CDS
GCCACTGTTGTGGAGTGCAA+AGG 0.593450 6_1:+6170509 Msa0871270:CDS
AGTTCATGCCAAAACTAGCT+GGG 0.594981 6_1:+6170980 Msa0871270:CDS
TGCGAAAGGGAATGCAGTAA+GGG 0.601067 6_1:+6170349 Msa0871270:CDS
ACTGCATTGATCATGCTCAT+GGG 0.609253 6_1:+6170552 Msa0871270:CDS
AGTTGGGATAAGGAGATCAC+AGG 0.611502 6_1:+6170862 Msa0871270:intron
TCTCATGATTCTGCTAAGTG+AGG 0.620530 6_1:+6170229 Msa0871270:five_prime_UTR
ACCTTTGCACTCCACAACAG+TGG 0.620667 6_1:-6170510 None:intergenic
AAAAGAACAAGCCACTGTTG+TGG 0.622805 6_1:+6170499 Msa0871270:CDS
CATGAGCATGATCAATGCAG+TGG 0.642794 6_1:-6170550 None:intergenic
CTAGCTGGGATGGATGCTGT+TGG 0.649663 6_1:+6170994 Msa0871270:CDS
GTATGGTTGAACAAAAGGAT+GGG 0.653224 6_1:+6170884 Msa0871270:CDS
GCTGTGACTATCGTCTCTCA+AGG 0.653772 6_1:+6170151 Msa0871270:five_prime_UTR
AACATACAAATTAATCAACA+AGG 0.684646 6_1:-6170198 None:intergenic
GTGTGAGACACTGAAAGCTG+AGG 0.748209 6_1:+6170933 Msa0871270:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTACTTTTTTATAACTCTAT+TGG + chr6_1:6171063-6171082 Msa0871270:intron 15.0%
!!! AAAACCTTAAAATATTTTGA+AGG - chr6_1:6171211-6171230 None:intergenic 15.0%
!!! ATTTAACTTAATAGCTTAAT+GGG - chr6_1:6171503-6171522 None:intergenic 15.0%
!!! TATTTAACTTAATAGCTTAA+TGG - chr6_1:6171504-6171523 None:intergenic 15.0%
!!! TTACTTTTTTATAACTCTAT+TGG + chr6_1:6171063-6171082 Msa0871270:intron 15.0%
!!! AAAACCTTAAAATATTTTGA+AGG - chr6_1:6171211-6171230 None:intergenic 15.0%
!!! ATTTAACTTAATAGCTTAAT+GGG - chr6_1:6171503-6171522 None:intergenic 15.0%
!!! TATTTAACTTAATAGCTTAA+TGG - chr6_1:6171504-6171523 None:intergenic 15.0%
!! AACATACAAATTAATCAACA+AGG - chr6_1:6170201-6170220 None:intergenic 20.0%
!! ATTGAATAATTACTTACGTA+TGG + chr6_1:6170291-6170310 Msa0871270:exon 20.0%
!! CTGTTATATCAAAAACATAT+AGG - chr6_1:6170474-6170493 None:intergenic 20.0%
!! TAGGAATCAAAATAAAAATC+TGG + chr6_1:6170639-6170658 Msa0871270:intron 20.0%
!! TAATGTAATCAAAGAGAAAT+CGG - chr6_1:6170800-6170819 None:intergenic 20.0%
!!! AAGTCCTTCAAAATATTTTA+AGG + chr6_1:6171204-6171223 Msa0871270:intron 20.0%
!! AACATACAAATTAATCAACA+AGG - chr6_1:6170201-6170220 None:intergenic 20.0%
!! ATTGAATAATTACTTACGTA+TGG + chr6_1:6170291-6170310 Msa0871270:exon 20.0%
!! CTGTTATATCAAAAACATAT+AGG - chr6_1:6170474-6170493 None:intergenic 20.0%
!! TAGGAATCAAAATAAAAATC+TGG + chr6_1:6170639-6170658 Msa0871270:intron 20.0%
!! TAATGTAATCAAAGAGAAAT+CGG - chr6_1:6170800-6170819 None:intergenic 20.0%
!!! AAGTCCTTCAAAATATTTTA+AGG + chr6_1:6171204-6171223 Msa0871270:intron 20.0%
! CAAAATTACTGTAAAGAGAA+TGG - chr6_1:6170255-6170274 None:intergenic 25.0%
!!! CTTTTTTATGGTGAAAGAAT+TGG + chr6_1:6170324-6170343 Msa0871270:CDS 25.0%
! TAGAAAACTATTCTGTAGAA+AGG + chr6_1:6171552-6171571 Msa0871270:three_prime_UTR 25.0%
! CAAAATTACTGTAAAGAGAA+TGG - chr6_1:6170255-6170274 None:intergenic 25.0%
!!! CTTTTTTATGGTGAAAGAAT+TGG + chr6_1:6170324-6170343 Msa0871270:CDS 25.0%
! TAGAAAACTATTCTGTAGAA+AGG + chr6_1:6171552-6171571 Msa0871270:three_prime_UTR 25.0%
TTTCACCATAAAAAAGACAG+AGG - chr6_1:6170320-6170339 None:intergenic 30.0%
TTCTACTCAAGACAAACTAT+AGG + chr6_1:6170620-6170639 Msa0871270:intron 30.0%
!! AGAAATCGGTTTGTAAAACT+AGG - chr6_1:6170786-6170805 None:intergenic 30.0%
TGCAAAACACACAATTTGTA+AGG - chr6_1:6170828-6170847 None:intergenic 30.0%
! CATTCACCTTTTTAACAGTT+GGG + chr6_1:6170846-6170865 Msa0871270:intron 30.0%
GTTATAGTTTCATGTCAGTT+CGG + chr6_1:6171097-6171116 Msa0871270:intron 30.0%
CATTTAAGCAAATCAGAACT+AGG - chr6_1:6171333-6171352 None:intergenic 30.0%
! CTTGACTCTTATATTTTGCT+TGG + chr6_1:6171364-6171383 Msa0871270:intron 30.0%
TTGAATTATGCAGTTAACGT+TGG + chr6_1:6171391-6171410 Msa0871270:intron 30.0%
TTGGAAAGATGACAATTTCT+GGG + chr6_1:6171410-6171429 Msa0871270:CDS 30.0%
AAACTATTCTGTAGAAAGGT+AGG + chr6_1:6171556-6171575 Msa0871270:three_prime_UTR 30.0%
!!! CTATTCCAGGATGATTTTTT+GGG - chr6_1:6171595-6171614 None:intergenic 30.0%
!!! TCTATTCCAGGATGATTTTT+TGG - chr6_1:6171596-6171615 None:intergenic 30.0%
TTTCACCATAAAAAAGACAG+AGG - chr6_1:6170320-6170339 None:intergenic 30.0%
TTCTACTCAAGACAAACTAT+AGG + chr6_1:6170620-6170639 Msa0871270:intron 30.0%
!! AGAAATCGGTTTGTAAAACT+AGG - chr6_1:6170786-6170805 None:intergenic 30.0%
TGCAAAACACACAATTTGTA+AGG - chr6_1:6170828-6170847 None:intergenic 30.0%
! CATTCACCTTTTTAACAGTT+GGG + chr6_1:6170846-6170865 Msa0871270:intron 30.0%
GTTATAGTTTCATGTCAGTT+CGG + chr6_1:6171097-6171116 Msa0871270:intron 30.0%
CATTTAAGCAAATCAGAACT+AGG - chr6_1:6171333-6171352 None:intergenic 30.0%
! CTTGACTCTTATATTTTGCT+TGG + chr6_1:6171364-6171383 Msa0871270:intron 30.0%
TTGAATTATGCAGTTAACGT+TGG + chr6_1:6171391-6171410 Msa0871270:intron 30.0%
TTGGAAAGATGACAATTTCT+GGG + chr6_1:6171410-6171429 Msa0871270:CDS 30.0%
AAACTATTCTGTAGAAAGGT+AGG + chr6_1:6171556-6171575 Msa0871270:three_prime_UTR 30.0%
!!! CTATTCCAGGATGATTTTTT+GGG - chr6_1:6171595-6171614 None:intergenic 30.0%
!!! TCTATTCCAGGATGATTTTT+TGG - chr6_1:6171596-6171615 None:intergenic 30.0%
CAACAAGGTAGCATACTAAA+GGG - chr6_1:6170186-6170205 None:intergenic 35.0%
TCAACAAGGTAGCATACTAA+AGG - chr6_1:6170187-6170206 None:intergenic 35.0%
!!! GGTTTCCTCTGTCTTTTTTA+TGG + chr6_1:6170312-6170331 Msa0871270:CDS 35.0%
GTTTGTAAAACTAGGTACAG+AGG - chr6_1:6170778-6170797 None:intergenic 35.0%
! GCATTCACCTTTTTAACAGT+TGG + chr6_1:6170845-6170864 Msa0871270:intron 35.0%
CCTTATCCCAACTGTTAAAA+AGG - chr6_1:6170855-6170874 None:intergenic 35.0%
! CCTTTTTAACAGTTGGGATA+AGG + chr6_1:6170852-6170871 Msa0871270:intron 35.0%
GTATGGTTGAACAAAAGGAT+GGG + chr6_1:6170884-6170903 Msa0871270:CDS 35.0%
TTCAGTTGTGACAATTGGAA+CGG + chr6_1:6171120-6171139 Msa0871270:intron 35.0%
! GACTCTTATATTTTGCTTGG+TGG + chr6_1:6171367-6171386 Msa0871270:intron 35.0%
GTTGGAAAGATGACAATTTC+TGG + chr6_1:6171409-6171428 Msa0871270:CDS 35.0%
CAACAAGGTAGCATACTAAA+GGG - chr6_1:6170186-6170205 None:intergenic 35.0%
TCAACAAGGTAGCATACTAA+AGG - chr6_1:6170187-6170206 None:intergenic 35.0%
!!! GGTTTCCTCTGTCTTTTTTA+TGG + chr6_1:6170312-6170331 Msa0871270:CDS 35.0%
GTTTGTAAAACTAGGTACAG+AGG - chr6_1:6170778-6170797 None:intergenic 35.0%
! GCATTCACCTTTTTAACAGT+TGG + chr6_1:6170845-6170864 Msa0871270:intron 35.0%
CCTTATCCCAACTGTTAAAA+AGG - chr6_1:6170855-6170874 None:intergenic 35.0%
! CCTTTTTAACAGTTGGGATA+AGG + chr6_1:6170852-6170871 Msa0871270:intron 35.0%
GTATGGTTGAACAAAAGGAT+GGG + chr6_1:6170884-6170903 Msa0871270:CDS 35.0%
TTCAGTTGTGACAATTGGAA+CGG + chr6_1:6171120-6171139 Msa0871270:intron 35.0%
! GACTCTTATATTTTGCTTGG+TGG + chr6_1:6171367-6171386 Msa0871270:intron 35.0%
GTTGGAAAGATGACAATTTC+TGG + chr6_1:6171409-6171428 Msa0871270:CDS 35.0%
TCTCATGATTCTGCTAAGTG+AGG + chr6_1:6170229-6170248 Msa0871270:five_prime_UTR 40.0%
TGAAAGAATTGGAGTGCGAA+AGG + chr6_1:6170335-6170354 Msa0871270:CDS 40.0%
GAAAGAATTGGAGTGCGAAA+GGG + chr6_1:6170336-6170355 Msa0871270:CDS 40.0%
AAAAGAACAAGCCACTGTTG+TGG + chr6_1:6170499-6170518 Msa0871270:CDS 40.0%
! ACTGCATTGATCATGCTCAT+GGG + chr6_1:6170552-6170571 Msa0871270:CDS 40.0%
CCACAAGATGATCAATGTTG+TGG - chr6_1:6170599-6170618 None:intergenic 40.0%
CCACAACATTGATCATCTTG+TGG + chr6_1:6170596-6170615 Msa0871270:intron 40.0%
AAACTAGGTACAGAGGACAA+TGG - chr6_1:6170771-6170790 None:intergenic 40.0%
CACAGGTATGGTTGAACAAA+AGG + chr6_1:6170879-6170898 Msa0871270:CDS 40.0%
GGTATGGTTGAACAAAAGGA+TGG + chr6_1:6170883-6170902 Msa0871270:CDS 40.0%
AAGTTCATGCCAAAACTAGC+TGG + chr6_1:6170979-6170998 Msa0871270:CDS 40.0%
AGTTCATGCCAAAACTAGCT+GGG + chr6_1:6170980-6170999 Msa0871270:CDS 40.0%
TTCGGTTCAGTTGTGACAAT+TGG + chr6_1:6171115-6171134 Msa0871270:intron 40.0%
! AAAGATGACAATTTCTGGGC+TGG + chr6_1:6171414-6171433 Msa0871270:CDS 40.0%
!! ACAATTTCTGGGCTGGATTT+TGG + chr6_1:6171421-6171440 Msa0871270:CDS 40.0%
GTTTGCCCAAAAAATCATCC+TGG + chr6_1:6171587-6171606 Msa0871270:three_prime_UTR 40.0%
CTCGTCACTTATTGAAGGAA+TGG + chr6_1:6171624-6171643 Msa0871270:three_prime_UTR 40.0%
TCTCATGATTCTGCTAAGTG+AGG + chr6_1:6170229-6170248 Msa0871270:five_prime_UTR 40.0%
TGAAAGAATTGGAGTGCGAA+AGG + chr6_1:6170335-6170354 Msa0871270:CDS 40.0%
GAAAGAATTGGAGTGCGAAA+GGG + chr6_1:6170336-6170355 Msa0871270:CDS 40.0%
AAAAGAACAAGCCACTGTTG+TGG + chr6_1:6170499-6170518 Msa0871270:CDS 40.0%
! ACTGCATTGATCATGCTCAT+GGG + chr6_1:6170552-6170571 Msa0871270:CDS 40.0%
CCACAAGATGATCAATGTTG+TGG - chr6_1:6170599-6170618 None:intergenic 40.0%
CCACAACATTGATCATCTTG+TGG + chr6_1:6170596-6170615 Msa0871270:intron 40.0%
AAACTAGGTACAGAGGACAA+TGG - chr6_1:6170771-6170790 None:intergenic 40.0%
CACAGGTATGGTTGAACAAA+AGG + chr6_1:6170879-6170898 Msa0871270:CDS 40.0%
GGTATGGTTGAACAAAAGGA+TGG + chr6_1:6170883-6170902 Msa0871270:CDS 40.0%
AAGTTCATGCCAAAACTAGC+TGG + chr6_1:6170979-6170998 Msa0871270:CDS 40.0%
AGTTCATGCCAAAACTAGCT+GGG + chr6_1:6170980-6170999 Msa0871270:CDS 40.0%
TTCGGTTCAGTTGTGACAAT+TGG + chr6_1:6171115-6171134 Msa0871270:intron 40.0%
! AAAGATGACAATTTCTGGGC+TGG + chr6_1:6171414-6171433 Msa0871270:CDS 40.0%
!! ACAATTTCTGGGCTGGATTT+TGG + chr6_1:6171421-6171440 Msa0871270:CDS 40.0%
GTTTGCCCAAAAAATCATCC+TGG + chr6_1:6171587-6171606 Msa0871270:three_prime_UTR 40.0%
TGCGAAAGGGAATGCAGTAA+GGG + chr6_1:6170349-6170368 Msa0871270:CDS 45.0%
CATGAGCATGATCAATGCAG+TGG - chr6_1:6170553-6170572 None:intergenic 45.0%
! CACTGCATTGATCATGCTCA+TGG + chr6_1:6170551-6170570 Msa0871270:CDS 45.0%
AGGTACAGAGGACAATGGAT+TGG - chr6_1:6170766-6170785 None:intergenic 45.0%
AGTTGGGATAAGGAGATCAC+AGG + chr6_1:6170862-6170881 Msa0871270:intron 45.0%
GGATAAGGAGATCACAGGTA+TGG + chr6_1:6170867-6170886 Msa0871270:CDS 45.0%
TTGGCATGAACTTCCTGATG+TGG - chr6_1:6170972-6170991 None:intergenic 45.0%
ACGTGCTCGTCACTTATTGA+AGG + chr6_1:6171619-6171638 Msa0871270:three_prime_UTR 45.0%
TGCGAAAGGGAATGCAGTAA+GGG + chr6_1:6170349-6170368 Msa0871270:CDS 45.0%
CATGAGCATGATCAATGCAG+TGG - chr6_1:6170553-6170572 None:intergenic 45.0%
! CACTGCATTGATCATGCTCA+TGG + chr6_1:6170551-6170570 Msa0871270:CDS 45.0%
AGGTACAGAGGACAATGGAT+TGG - chr6_1:6170766-6170785 None:intergenic 45.0%
AGTTGGGATAAGGAGATCAC+AGG + chr6_1:6170862-6170881 Msa0871270:intron 45.0%
GGATAAGGAGATCACAGGTA+TGG + chr6_1:6170867-6170886 Msa0871270:CDS 45.0%
TTGGCATGAACTTCCTGATG+TGG - chr6_1:6170972-6170991 None:intergenic 45.0%
ACGTGCTCGTCACTTATTGA+AGG + chr6_1:6171619-6171638 Msa0871270:three_prime_UTR 45.0%
GCTGTGACTATCGTCTCTCA+AGG + chr6_1:6170151-6170170 Msa0871270:five_prime_UTR 50.0%
GTGCGAAAGGGAATGCAGTA+AGG + chr6_1:6170348-6170367 Msa0871270:CDS 50.0%
AAGGGAATGCAGTAAGGGTG+AGG + chr6_1:6170354-6170373 Msa0871270:CDS 50.0%
GCAGTAAGGGTGAGGACTAT+CGG + chr6_1:6170362-6170381 Msa0871270:CDS 50.0%
ACCTTTGCACTCCACAACAG+TGG - chr6_1:6170513-6170532 None:intergenic 50.0%
GTGTGAGACACTGAAAGCTG+AGG + chr6_1:6170933-6170952 Msa0871270:CDS 50.0%
ATGCAGCTGAAGACCACATC+AGG + chr6_1:6170956-6170975 Msa0871270:CDS 50.0%
CATGCCAAAACTAGCTGGGA+TGG + chr6_1:6170984-6171003 Msa0871270:CDS 50.0%
!! GCATCCATCCCAGCTAGTTT+TGG - chr6_1:6170991-6171010 None:intergenic 50.0%
! TTGTTTCTTCCCCTGCATGC+TGG + chr6_1:6171282-6171301 Msa0871270:intron 50.0%
TGTTTCTTCCCCTGCATGCT+GGG + chr6_1:6171283-6171302 Msa0871270:intron 50.0%
AAAACAGACCCAGCATGCAG+GGG - chr6_1:6171294-6171313 None:intergenic 50.0%
CAAAACAGACCCAGCATGCA+GGG - chr6_1:6171295-6171314 None:intergenic 50.0%
ACAAAACAGACCCAGCATGC+AGG - chr6_1:6171296-6171315 None:intergenic 50.0%
! TGCATGCTGGGTCTGTTTTG+TGG + chr6_1:6171295-6171314 Msa0871270:intron 50.0%
! CGAGCACGTGTTTCTATTCC+AGG - chr6_1:6171608-6171627 None:intergenic 50.0%
GCTGTGACTATCGTCTCTCA+AGG + chr6_1:6170151-6170170 Msa0871270:five_prime_UTR 50.0%
GTGCGAAAGGGAATGCAGTA+AGG + chr6_1:6170348-6170367 Msa0871270:CDS 50.0%
AAGGGAATGCAGTAAGGGTG+AGG + chr6_1:6170354-6170373 Msa0871270:CDS 50.0%
GCAGTAAGGGTGAGGACTAT+CGG + chr6_1:6170362-6170381 Msa0871270:CDS 50.0%
ACCTTTGCACTCCACAACAG+TGG - chr6_1:6170513-6170532 None:intergenic 50.0%
GTGTGAGACACTGAAAGCTG+AGG + chr6_1:6170933-6170952 Msa0871270:CDS 50.0%
ATGCAGCTGAAGACCACATC+AGG + chr6_1:6170956-6170975 Msa0871270:CDS 50.0%
CATGCCAAAACTAGCTGGGA+TGG + chr6_1:6170984-6171003 Msa0871270:CDS 50.0%
!! GCATCCATCCCAGCTAGTTT+TGG - chr6_1:6170991-6171010 None:intergenic 50.0%
! TTGTTTCTTCCCCTGCATGC+TGG + chr6_1:6171282-6171301 Msa0871270:intron 50.0%
TGTTTCTTCCCCTGCATGCT+GGG + chr6_1:6171283-6171302 Msa0871270:intron 50.0%
AAAACAGACCCAGCATGCAG+GGG - chr6_1:6171294-6171313 None:intergenic 50.0%
CAAAACAGACCCAGCATGCA+GGG - chr6_1:6171295-6171314 None:intergenic 50.0%
ACAAAACAGACCCAGCATGC+AGG - chr6_1:6171296-6171315 None:intergenic 50.0%
! TGCATGCTGGGTCTGTTTTG+TGG + chr6_1:6171295-6171314 Msa0871270:intron 50.0%
! CGAGCACGTGTTTCTATTCC+AGG - chr6_1:6171608-6171627 None:intergenic 50.0%
GCCACTGTTGTGGAGTGCAA+AGG + chr6_1:6170509-6170528 Msa0871270:CDS 55.0%
CTAGCTGGGATGGATGCTGT+TGG + chr6_1:6170994-6171013 Msa0871270:CDS 55.0%
GCCACTGTTGTGGAGTGCAA+AGG + chr6_1:6170509-6170528 Msa0871270:CDS 55.0%
CTAGCTGGGATGGATGCTGT+TGG + chr6_1:6170994-6171013 Msa0871270:CDS 55.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 6170119 6171645 6170119 ID=Msa0871270;Name=Msa0871270
chr6_1 mRNA 6170119 6171645 6170119 ID=Msa0871270-mRNA-1;Parent=Msa0871270;Name=Msa0871270-mRNA-1;_AED=0.27;_eAED=0.27;_QI=191|1|1|1|1|1|4|174|134
chr6_1 exon 6170119 6170414 6170119 ID=Msa0871270-mRNA-1:exon:1837;Parent=Msa0871270-mRNA-1
chr6_1 exon 6170494 6170573 6170494 ID=Msa0871270-mRNA-1:exon:1838;Parent=Msa0871270-mRNA-1
chr6_1 exon 6170864 6171015 6170864 ID=Msa0871270-mRNA-1:exon:1839;Parent=Msa0871270-mRNA-1
chr6_1 exon 6171404 6171645 6171404 ID=Msa0871270-mRNA-1:exon:1840;Parent=Msa0871270-mRNA-1
chr6_1 five_prime_UTR 6170119 6170309 6170119 ID=Msa0871270-mRNA-1:five_prime_utr;Parent=Msa0871270-mRNA-1
chr6_1 CDS 6170310 6170414 6170310 ID=Msa0871270-mRNA-1:cds;Parent=Msa0871270-mRNA-1
chr6_1 CDS 6170494 6170573 6170494 ID=Msa0871270-mRNA-1:cds;Parent=Msa0871270-mRNA-1
chr6_1 CDS 6170864 6171015 6170864 ID=Msa0871270-mRNA-1:cds;Parent=Msa0871270-mRNA-1
chr6_1 CDS 6171404 6171471 6171404 ID=Msa0871270-mRNA-1:cds;Parent=Msa0871270-mRNA-1
chr6_1 three_prime_UTR 6171472 6171645 6171472 ID=Msa0871270-mRNA-1:three_prime_utr;Parent=Msa0871270-mRNA-1
Gene Sequence

>Msa0871270

ATGGTTTCCTCTGTCTTTTTTATGGTGAAAGAATTGGAGTGCGAAAGGGAATGCAGTAAGGGTGAGGACTATCGGCTAATCAAACTCACAATCACAGATTTCAATACGAAAAAAGAACAAGCCACTGTTGTGGAGTGCAAAGGTCATGATGCTGCTCGATTCCACTGCATTGATCATGCTCATGGTTGGGATAAGGAGATCACAGGTATGGTTGAACAAAAGGATGGGAAGAAAAGAATCACAGTTTCATTTGAGTGTGAGACACTGAAAGCTGAGGATGCAGCTGAAGACCACATCAGGAAGTTCATGCCAAAACTAGCTGGGATGGATGCTGTTGTTAACGTTGGAAAGATGACAATTTCTGGGCTGGATTTTGGAGCAGATGAAGATGATGATACTGAGTAG

Protein sequence

>Msa0871270

MVSSVFFMVKELECERECSKGEDYRLIKLTITDFNTKKEQATVVECKGHDAARFHCIDHAHGWDKEITGMVEQKDGKKRITVSFECETLKAEDAAEDHIRKFMPKLAGMDAVVNVGKMTISGLDFGADEDDDTE*