AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1218360

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1218360 MtrunA17_Chr4g0068011 98.454 647 10 0 1 647 2 648 0.0 1313
Msa1218360 MtrunA17_Chr2g0294901 68.585 643 191 6 6 641 8 646 0.0 882
Msa1218360 MtrunA17_Chr2g0319581 51.535 619 289 8 30 647 53 661 0.0 609
Msa1218360 MtrunA17_Chr5g0394101 57.235 463 188 6 181 641 4 458 0.0 556
Msa1218360 MtrunA17_Chr7g0219921 26.115 471 289 19 188 645 18 442 2.60e-42 159
Msa1218360 MtrunA17_Chr2g0333731 26.452 465 265 21 203 645 35 444 4.59e-40 152
Msa1218360 MtrunA17_Chr6g0455401 26.964 471 284 21 188 645 19 442 1.19e-38 148
Msa1218360 MtrunA17_Chr2g0308371 27.897 466 281 20 192 646 19 440 3.85e-35 138
Msa1218360 MtrunA17_Chr2g0308381 25.107 466 294 18 192 647 29 449 1.47e-34 137
Msa1218360 MtrunA17_Chr6g0455411 26.984 441 253 23 203 627 26 413 5.82e-34 134
Msa1218360 MtrunA17_Chr5g0394091 43.662 142 80 0 28 169 36 177 3.83e-33 127
Msa1218360 MtrunA17_Chr3g0145441 24.057 424 269 15 203 617 49 428 5.41e-33 132
Msa1218360 MtrunA17_Chr6g0455391 25.714 420 257 17 203 617 34 403 3.21e-32 129
Msa1218360 MtrunA17_Chr7g0219931 26.230 427 251 21 203 618 26 399 6.01e-31 125
Msa1218360 MtrunA17_Chr4g0067991 52.273 88 40 2 547 634 7 92 3.04e-17 78.6
Msa1218360 MtrunA17_Chr4g0067991 85.294 34 5 0 164 197 14 47 3.68e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1218360 AT4G16120.1 67.662 603 190 4 31 631 46 645 0.0 860
Msa1218360 AT3G16860.1 64.640 625 207 7 27 646 36 651 0.0 820
Msa1218360 AT5G49270.1 60.806 620 237 5 31 647 45 661 0.0 796
Msa1218360 AT3G20580.1 52.327 623 285 5 27 642 54 671 0.0 658
Msa1218360 AT4G27110.1 51.057 615 293 5 31 645 48 654 0.0 658
Msa1218360 AT5G60920.1 26.531 441 268 19 204 632 44 440 1.11e-36 143
Msa1218360 AT3G29810.1 26.477 457 271 21 204 646 36 441 8.76e-36 140
Msa1218360 AT3G02210.1 26.539 471 284 23 190 646 26 448 6.32e-35 138
Msa1218360 AT5G60920.2 26.316 437 266 19 208 632 1 393 6.43e-35 137
Msa1218360 AT5G15630.1 26.503 449 268 21 203 638 27 426 1.61e-34 136
Msa1218360 AT1G09790.1 26.932 427 246 17 204 618 43 415 8.81e-34 135
Msa1218360 AT1G09790.2 26.932 427 246 17 204 618 32 404 9.57e-34 134
Msa1218360 AT5G15630.3 26.376 436 258 21 220 643 8 392 1.19e-31 127
Msa1218360 AT5G15630.4 26.353 425 247 21 229 643 11 379 1.12e-30 124
Msa1218360 AT5G15630.2 26.353 425 247 21 229 643 11 379 1.12e-30 124
Msa1218360 AT5G15630.5 26.687 326 196 16 203 522 27 315 1.23e-24 106

Find 199 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCGGTAGGGTTGCTTCTT+TGG 0.158531 8_1:+80978853 None:intergenic
TTACTAGGATCCATAGATTT+TGG 0.187680 8_1:+80977361 None:intergenic
TTCTTTCAACCTTGTTATTA+TGG 0.200360 8_1:-80976185 Msa1218360:three_prime_UTR
ACATGTTCTTGCTGTATTCT+TGG 0.221335 8_1:+80977024 None:intergenic
ATTAACACCACCTATTTCTA+TGG 0.228436 8_1:+80976697 None:intergenic
CAAGCCTTCCGAGAGGATTT+TGG 0.236120 8_1:+80977632 None:intergenic
CATGTTCTTGCTGTATTCTT+GGG 0.256699 8_1:+80977025 None:intergenic
CCCATTGAAGAAGACTTTCT+TGG 0.260858 8_1:+80976505 None:intergenic
CTCTCGGAAGGCTTGATAAT+TGG 0.261046 8_1:-80977624 Msa1218360:CDS
TCATCGCTGTTGTGTCTCTT+TGG 0.271570 8_1:+80979028 None:intergenic
CATCGCTGTTGTGTCTCTTT+GGG 0.272122 8_1:+80979029 None:intergenic
CCGTCTGTTCTGGATGCTTC+TGG 0.272420 8_1:-80977544 Msa1218360:CDS
GATCCTATGATTCAAATTAC+TGG 0.274911 8_1:-80977675 Msa1218360:CDS
TACTATATTGCCAAAATCTA+TGG 0.276132 8_1:-80977371 Msa1218360:CDS
ATCGGTAGGGTTGCTTCTTT+GGG 0.305055 8_1:+80978854 None:intergenic
GGAAAATTCCTTCTTGTTGC+CGG 0.319950 8_1:-80977399 Msa1218360:CDS
TTACTGTCAGATTATAATAA+AGG 0.326170 8_1:-80976842 Msa1218360:CDS
TTCCAACCAGTGGTGCTTCC+AGG 0.345344 8_1:-80976457 Msa1218360:CDS
CAGGCTCAGGTCAGTCTTGT+TGG 0.349029 8_1:-80978607 Msa1218360:CDS
AGGAGCTTATCCGTCTGTTC+TGG 0.349215 8_1:-80977554 Msa1218360:CDS
AAGTTTCTGCCGCGTCAAAA+TGG 0.352120 8_1:-80977727 Msa1218360:CDS
GTAATGTTTGCTTTGAACTT+AGG 0.358603 8_1:+80977760 None:intergenic
CCCAAGAAAGTCTTCTTCAA+TGG 0.363886 8_1:-80976506 Msa1218360:CDS
GGTTAAACGCGTTCAAGAAA+TGG 0.369116 8_1:+80979171 None:intergenic
TACGATAATAATGCAAGGTT+TGG 0.371365 8_1:-80976672 Msa1218360:CDS
CCAAGAAAGTCTTCTTCAAT+GGG 0.375765 8_1:-80976505 Msa1218360:CDS
AACGGCAACCCTGTTGGATC+TGG 0.382141 8_1:+80977187 None:intergenic
TCACCGCAAGGTGGTGGGTT+TGG 0.383667 8_1:+80976893 None:intergenic
CCATTGAAGAAGACTTTCTT+GGG 0.383850 8_1:+80976506 None:intergenic
ACCGTTGTTGAGCACGCTTA+AGG 0.403977 8_1:+80978822 None:intergenic
TTGATAATTGGAGGTTGAGC+TGG 0.407068 8_1:-80977612 Msa1218360:CDS
TCAGTATCATTGAATTTAGT+AGG 0.408040 8_1:+80977427 None:intergenic
AATGCAAGCGCCATAGAAAT+AGG 0.411365 8_1:-80976707 Msa1218360:CDS
GGAGGACCGCATTTGTAGTC+AGG 0.413192 8_1:+80977235 None:intergenic
TTCCTTCCTGGAAGCACCAC+TGG 0.414288 8_1:+80976451 None:intergenic
AGCTTTCACCACCACAGAAC+TGG 0.416049 8_1:-80977279 Msa1218360:CDS
CGTACAGATCCTAGGGTGCC+TGG 0.420757 8_1:-80976605 Msa1218360:CDS
GCTTCAAATTTCGAATTTGA+AGG 0.422056 8_1:-80979060 Msa1218360:five_prime_UTR
CGCTTAAGGTTGATTCAAAT+CGG 0.422598 8_1:+80978836 None:intergenic
CTGGTTTACTGCTGTGCAAA+TGG 0.424089 8_1:-80976768 Msa1218360:CDS
GCCAAGGCTTATGCGTGGGC+GGG 0.430061 8_1:-80976935 Msa1218360:CDS
AGTAGGAGGAAGATCAATAA+TGG 0.431671 8_1:+80977444 None:intergenic
TGCCCAGTAATTTGAATCAT+AGG 0.431744 8_1:+80977672 None:intergenic
TTGGCAATATAGTACCGTTC+CGG 0.432627 8_1:+80977380 None:intergenic
AGCAAAGGAAAATTCCTTCC+TGG 0.437794 8_1:+80976439 None:intergenic
GCATTTACTTGATGTTCCCT+TGG 0.438776 8_1:+80977114 None:intergenic
GAGGGATTGAACTACCTTGT+TGG 0.439092 8_1:-80976650 Msa1218360:CDS
GTCTTCGGCAACGGAACATC+AGG 0.440318 8_1:+80978562 None:intergenic
AGGCTCAGGTCAGTCTTGTT+GGG 0.441362 8_1:-80978606 Msa1218360:CDS
TTAGCAAGCTTGATCGTCTT+CGG 0.442830 8_1:+80978547 None:intergenic
TGTTGTTTCCCAGGCACCCT+AGG 0.445041 8_1:+80976596 None:intergenic
CTAACCCTCGTACAGATCCT+AGG 0.448064 8_1:-80976613 Msa1218360:CDS
ACGCATAAGCCTTGGCAGTT+CGG 0.454629 8_1:+80976942 None:intergenic
TCCTGAACCGCAAAATCAAA+TGG 0.454968 8_1:+80976358 None:intergenic
CCACGAACAACACTGATTCC+AGG 0.455604 8_1:+80976542 None:intergenic
CCAAGGCTTATGCGTGGGCG+GGG 0.459506 8_1:-80976934 Msa1218360:CDS
TTGTTACTGTTAGGTAAGAA+TGG 0.460415 8_1:-80977808 Msa1218360:intron
GATAATAATGCAAGGTTTGG+AGG 0.462661 8_1:-80976669 Msa1218360:CDS
CTGTGGAAAACCAGCGAAAA+CGG 0.467332 8_1:+80978678 None:intergenic
CAAGGTGGTGGGTTTGGCGT+TGG 0.470344 8_1:+80976899 None:intergenic
CAGTTATCACCGCAAGGTGG+TGG 0.470714 8_1:+80976887 None:intergenic
ACTGAGAATCCAGATCCAAC+AGG 0.471504 8_1:-80977196 Msa1218360:CDS
TTGGCAGTTCGGTTCTCAAA+AGG 0.472608 8_1:+80976953 None:intergenic
TCGGAAGGCTTGATAATTGG+AGG 0.474793 8_1:-80977621 Msa1218360:CDS
TACCTTGTTGGAGAAACAAA+TGG 0.475054 8_1:-80976638 Msa1218360:CDS
TTCTTTGGGTCGGTGACGTT+AGG 0.475843 8_1:+80978868 None:intergenic
ACGATCAAGCTTGCTAATGA+TGG 0.476555 8_1:-80978541 Msa1218360:CDS
ACTGCGGTGTGAGCATCAAC+TGG 0.476725 8_1:-80976868 Msa1218360:CDS
TTCACAAAGAAAACTACTCC+TGG 0.480154 8_1:-80976560 Msa1218360:CDS
AAACGGTGCCGTTTCCAACT+AGG 0.480916 8_1:+80978695 None:intergenic
AACTGTAATGGCAAGTTGGC+AGG 0.483520 8_1:-80977158 Msa1218360:CDS
ATTACTGACTGTTGTTTCCC+AGG 0.485126 8_1:+80976587 None:intergenic
GTGTTGTTCGTGGTGGTGAC+GGG 0.485449 8_1:-80976532 Msa1218360:CDS
TGTTACTGTTAGGTAAGAAT+GGG 0.485556 8_1:-80977807 Msa1218360:intron
CCCCGCCCACGCATAAGCCT+TGG 0.486167 8_1:+80976934 None:intergenic
TCAGTAGGACTAACACGAAC+CGG 0.494414 8_1:+80977214 None:intergenic
TTAGTATGATTGTTGCTAAG+AGG 0.496024 8_1:+80978971 None:intergenic
TCATTCTTGTTTCTGTGACA+AGG 0.496740 8_1:+80976297 None:intergenic
GTAGGGTTGCTTCTTTGGGT+CGG 0.497835 8_1:+80978858 None:intergenic
AACGGTGCCGTTTCCAACTA+GGG 0.498754 8_1:+80978696 None:intergenic
ATTGGAGGTTGAGCTGGGAC+TGG 0.498839 8_1:-80977606 Msa1218360:CDS
CCACAGAACTGGAAGATTAG+TGG 0.499210 8_1:-80977268 Msa1218360:CDS
AGTGTTGTTCGTGGTGGTGA+CGG 0.500030 8_1:-80976533 Msa1218360:CDS
TGTCAGATTATAATAAAGGC+TGG 0.507071 8_1:-80976838 Msa1218360:CDS
AATTCAATGATACTGACGTT+GGG 0.508579 8_1:-80977420 Msa1218360:CDS
GTGCCGTTTCCAACTAGGGC+AGG 0.511181 8_1:+80978700 None:intergenic
ATGTTCTTGCTGTATTCTTG+GGG 0.511347 8_1:+80977026 None:intergenic
ATAATAAAGGCTGGAGTGCA+AGG 0.512659 8_1:-80976829 Msa1218360:CDS
GTATGAATCAAATTCTATCC+AGG 0.513520 8_1:+80976325 None:intergenic
ACCGTCAGCGAGAACAGCAT+TGG 0.514805 8_1:+80978732 None:intergenic
GCCGTTAAACAAAACTGTAA+TGG 0.515209 8_1:-80977170 Msa1218360:CDS
TCCAATGCTGTTCTCGCTGA+CGG 0.515524 8_1:-80978733 Msa1218360:CDS
CTCCATTTGTTTCTCCAACA+AGG 0.515735 8_1:+80976636 None:intergenic
TCGTCTTCTTGTTATAGTAG+TGG 0.516006 8_1:-80976388 Msa1218360:exon
AATCTCGAAATAGACTTACT+AGG 0.517229 8_1:+80977346 None:intergenic
TGATAATTGGAGGTTGAGCT+GGG 0.519457 8_1:-80977611 Msa1218360:CDS
TGACTACAAATGCGGTCCTC+CGG 0.521089 8_1:-80977233 Msa1218360:CDS
TGCCAAGGCTTATGCGTGGG+CGG 0.522498 8_1:-80976936 Msa1218360:CDS
ACTACCCTCCCTGCCCTAGT+TGG 0.525815 8_1:-80978709 Msa1218360:CDS
TTCCTGGAAGCACCACTGGT+TGG 0.528051 8_1:+80976455 None:intergenic
ATTCCTTCTTGTTGCCGGAA+CGG 0.530325 8_1:-80977394 Msa1218360:CDS
CAAATGGACAAAGCAGCTGC+AGG 0.530745 8_1:-80976752 Msa1218360:CDS
GTTGGATCTGGATTCTCAGT+AGG 0.538813 8_1:+80977199 None:intergenic
TTTGACTCAGATGCAGGCTC+AGG 0.539352 8_1:-80978620 Msa1218360:CDS
ACAAAACTGTAATGGCAAGT+TGG 0.539967 8_1:-80977162 Msa1218360:CDS
CTCCCTGCCCTAGTTGGAAA+CGG 0.540667 8_1:-80978703 Msa1218360:CDS
AGCTCGGATCGGTTAAGCAC+TGG 0.541846 8_1:+80977298 None:intergenic
TCGGAGGGAAGCCACATGGC+AGG 0.542326 8_1:+80976989 None:intergenic
AGCTTGATCGTCTTCGGCAA+CGG 0.542358 8_1:+80978553 None:intergenic
AACTGCCAAGGCTTATGCGT+GGG 0.543903 8_1:-80976939 Msa1218360:CDS
TGATTCAAATTACTGGGCAG+AGG 0.546438 8_1:-80977668 Msa1218360:CDS
GGGTGATTTGACTCAGATGC+AGG 0.546490 8_1:-80978626 Msa1218360:CDS
ATCCTATGATTCAAATTACT+GGG 0.547534 8_1:-80977674 Msa1218360:CDS
TTGTTTAACGGCAACCCTGT+TGG 0.548344 8_1:+80977181 None:intergenic
TAAGGTTGATTCAAATCGGT+AGG 0.548344 8_1:+80978840 None:intergenic
GTACAGATCCTAGGGTGCCT+GGG 0.550393 8_1:-80976604 Msa1218360:CDS
GGAAAAGAAGGTACCTTGAC+CGG 0.550526 8_1:+80978498 None:intergenic
GTTCTGTGGTGGTGAAAGCT+CGG 0.556715 8_1:+80977282 None:intergenic
ATAATAATGCAAGGTTTGGA+GGG 0.559550 8_1:-80976668 Msa1218360:CDS
CAGTTGAACTCCGACGGAGG+AGG 0.559901 8_1:+80978894 None:intergenic
GTCTCGATGAACTCAAGTCA+TGG 0.560708 8_1:-80978801 Msa1218360:CDS
AACGCGTTCAAGAAATGGAA+AGG 0.561656 8_1:+80979176 None:intergenic
CCTGGAATCAGTGTTGTTCG+TGG 0.565292 8_1:-80976542 Msa1218360:CDS
AGGAACAAGGACAGCATCGG+AGG 0.565981 8_1:+80976973 None:intergenic
GAGTTCATATTTACAATGAA+AGG 0.567142 8_1:-80977574 Msa1218360:CDS
GTGTAACATTACAGCAGCCA+AGG 0.568058 8_1:-80977131 Msa1218360:CDS
TATTTCGAGATTCCAAATGC+AGG 0.568240 8_1:-80977335 Msa1218360:CDS
AAGACTGCTGTTGAAACGGC+GGG 0.569772 8_1:-80978646 Msa1218360:CDS
TCTGAAGACTGCTGTTGAAA+CGG 0.571130 8_1:-80978650 Msa1218360:CDS
AGTTATCACCGCAAGGTGGT+GGG 0.573185 8_1:+80976888 None:intergenic
AAGGTTGATTCAAATCGGTA+GGG 0.577202 8_1:+80978841 None:intergenic
TATATTTCGTTTCTCTCACA+CGG 0.579508 8_1:-80979082 Msa1218360:five_prime_UTR
TTTGGGTCGGTGACGTTAGG+CGG 0.582203 8_1:+80978871 None:intergenic
CCACTGGTTGGAAGTACAGA+AGG 0.582721 8_1:+80976467 None:intergenic
CTAATGTATTGAATTGTCAG+AGG 0.584525 8_1:-80977474 Msa1218360:CDS
TCTAATCTAGACATAAAGCA+TGG 0.584608 8_1:+80976239 None:intergenic
TGCCGTTTCCAACTAGGGCA+GGG 0.587865 8_1:+80978701 None:intergenic
AAAAGGAACAAGGACAGCAT+CGG 0.590596 8_1:+80976970 None:intergenic
ATCGGTAACCAAAATCCTCT+CGG 0.591098 8_1:-80977640 Msa1218360:CDS
AAATTCAATGATACTGACGT+TGG 0.593430 8_1:-80977421 Msa1218360:CDS
ACGCGTTCAAGAAATGGAAA+GGG 0.594937 8_1:+80979177 None:intergenic
TAGAAGCATCAAAGTAGCAA+AGG 0.598275 8_1:+80976424 None:intergenic
TTCGGCAACGGAACATCAGG+CGG 0.599231 8_1:+80978565 None:intergenic
GTTTCCAACTAGGGCAGGGA+GGG 0.601267 8_1:+80978705 None:intergenic
TAACCCTCGTACAGATCCTA+GGG 0.603078 8_1:-80976612 Msa1218360:CDS
GTCTCATACTCCTCCTCCGT+CGG 0.603483 8_1:-80978904 Msa1218360:CDS
CCTTCTGTACTTCCAACCAG+TGG 0.607323 8_1:-80976467 Msa1218360:CDS
AGCATCGGAGGGAAGCCACA+TGG 0.607549 8_1:+80976985 None:intergenic
CCAGAAGCATCCAGAACAGA+CGG 0.608061 8_1:+80977544 None:intergenic
GGAGGAAGATCAATAATGGT+AGG 0.609021 8_1:+80977448 None:intergenic
GTAACCAAAATCCTCTCGGA+AGG 0.609632 8_1:-80977636 Msa1218360:CDS
ACCTTAAGCGTGCTCAACAA+CGG 0.611367 8_1:-80978823 Msa1218360:CDS
CCACTAATCTTCCAGTTCTG+TGG 0.611751 8_1:+80977268 None:intergenic
AATAATACGATAATAATGCA+AGG 0.613339 8_1:-80976677 Msa1218360:CDS
AACCAGTGGTGCTTCCAGGA+AGG 0.613395 8_1:-80976453 Msa1218360:CDS
GAAAGTCTTCTTCAATGGGG+AGG 0.614351 8_1:-80976501 Msa1218360:CDS
GAGGACCGCATTTGTAGTCA+GGG 0.616412 8_1:+80977236 None:intergenic
ATCGTTACACGATTGTGCAT+CGG 0.620456 8_1:+80978933 None:intergenic
TACTGGGCAGAGGTTACGAT+CGG 0.620728 8_1:-80977658 Msa1218360:CDS
AGGCGGCAGTTGAACTCCGA+CGG 0.621931 8_1:+80978888 None:intergenic
GTACCGTTCCGGCAACAAGA+AGG 0.625866 8_1:+80977391 None:intergenic
GGAACAAGGACAGCATCGGA+GGG 0.627005 8_1:+80976974 None:intergenic
CGGCAGTTGAACTCCGACGG+AGG 0.628137 8_1:+80978891 None:intergenic
CTCGTCGTGCTGAAACTCAA+CGG 0.629703 8_1:+80978771 None:intergenic
GGACGTTGAAGAAGCTACAA+TGG 0.631853 8_1:+80978992 None:intergenic
TCGAGGACTGAGTCGCGGTG+TGG 0.632795 8_1:-80976268 Msa1218360:three_prime_UTR
CTAATCTTCCAGTTCTGTGG+TGG 0.635482 8_1:+80977271 None:intergenic
TAATAAAGGCTGGAGTGCAA+GGG 0.636466 8_1:-80976828 Msa1218360:CDS
AACAAGAATGAGAAATATCG+AGG 0.636951 8_1:-80976285 Msa1218360:three_prime_UTR
AAGAAGACGACTAGCAACAA+TGG 0.639469 8_1:+80976401 None:intergenic
GTGGTGGTGAAAGCTCGGAT+CGG 0.642389 8_1:+80977287 None:intergenic
GTATCATTGAATTTAGTAGG+AGG 0.642696 8_1:+80977430 None:intergenic
CTGAGAATCCAGATCCAACA+GGG 0.643968 8_1:-80977195 Msa1218360:CDS
TTCGGTTCTCAAAAGGAACA+AGG 0.646440 8_1:+80976960 None:intergenic
TCGGATCGGTTAAGCACTGG+CGG 0.651916 8_1:+80977301 None:intergenic
CCACCTTGCGGTGATAACTG+CGG 0.653782 8_1:-80976884 Msa1218360:CDS
CGTTTCCAACTAGGGCAGGG+AGG 0.655032 8_1:+80978704 None:intergenic
CCTTGCAAAACGTGTGCATG+TGG 0.655324 8_1:-80977052 Msa1218360:CDS
ACGCCAAACCCACCACCTTG+CGG 0.656219 8_1:-80976896 Msa1218360:CDS
TGTAACATTACAGCAGCCAA+GGG 0.657044 8_1:-80977130 Msa1218360:CDS
ATGTATTGAATTGTCAGAGG+AGG 0.658273 8_1:-80977471 Msa1218360:CDS
GGCACCCTAGGATCTGTACG+AGG 0.663910 8_1:+80976608 None:intergenic
GCAGTCTTCAGATCCGTCTG+TGG 0.665018 8_1:+80978661 None:intergenic
GAACTGCCAAGGCTTATGCG+TGG 0.665041 8_1:-80976940 Msa1218360:CDS
GAAGACTGCTGTTGAAACGG+CGG 0.671765 8_1:-80978647 Msa1218360:CDS
CTTAACCCTGACTACAAATG+CGG 0.671840 8_1:-80977241 Msa1218360:CDS
GTACTACTGCACCTGCCATG+TGG 0.672557 8_1:-80977000 Msa1218360:CDS
AAAGAAGGTACCTTGACCGG+TGG 0.672787 8_1:+80978501 None:intergenic
ACACCGCAGTTATCACCGCA+AGG 0.673011 8_1:+80976881 None:intergenic
GGAATCAGTGTTGTTCGTGG+TGG 0.683056 8_1:-80976539 Msa1218360:CDS
TAAAAGGAAAATGAATAACA+CGG 0.684492 8_1:+80979150 None:intergenic
TCTTCTGTACCATAATAACA+AGG 0.688785 8_1:+80976176 None:intergenic
GCAAGCGCCATAGAAATAGG+TGG 0.697809 8_1:-80976704 Msa1218360:CDS
GTAGGACTAACACGAACCGG+AGG 0.701832 8_1:+80977217 None:intergenic
CAAGAAAGTCTTCTTCAATG+GGG 0.710859 8_1:-80976504 Msa1218360:CDS
AAATATCGAGGACTGAGTCG+CGG 0.712727 8_1:-80976273 Msa1218360:three_prime_UTR
CAATTATCAAGCCTTCCGAG+AGG 0.713612 8_1:+80977625 None:intergenic
GCACCCTAGGATCTGTACGA+GGG 0.745402 8_1:+80976609 None:intergenic
CCGCAGTTATCACCGCAAGG+TGG 0.768131 8_1:+80976884 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTTAATTAAAGATAC+TGG + chr8_1:80976181-80976200 None:intergenic 10.0%
!!! TTTAACCTTTTTTTTTTAAA+TGG - chr8_1:80977465-80977484 Msa1218360:CDS 10.0%
!!! AGATAAAATTGTTTTTTCTT+AGG + chr8_1:80977351-80977370 None:intergenic 15.0%
!! AACAACCATTTAAAAAAAAA+AGG + chr8_1:80977473-80977492 None:intergenic 15.0%
!! TAAAAGGAAAATGAATAACA+CGG + chr8_1:80976149-80976168 None:intergenic 20.0%
!!! ATACTGGTTAATTTTGTAAA+AGG + chr8_1:80976165-80976184 None:intergenic 20.0%
!!! AAAGCAAAAAATCTAAAACA+AGG + chr8_1:80976822-80976841 None:intergenic 20.0%
!! TTGAATTTATATGTATCGTT+TGG - chr8_1:80977012-80977031 Msa1218360:CDS 20.0%
!!! TTTTTCCAATTAATGTTACA+AGG - chr8_1:80977095-80977114 Msa1218360:CDS 20.0%
!!! TTTTCCAATTAATGTTACAA+GGG - chr8_1:80977096-80977115 Msa1218360:CDS 20.0%
!! ACAACTTAATTAAAAGCTTA+AGG + chr8_1:80977425-80977444 None:intergenic 20.0%
!!! ATTAAGTTGTTTATTGAAAC+AGG - chr8_1:80977435-80977454 Msa1218360:CDS 20.0%
!! TTACTGTCAGATTATAATAA+AGG - chr8_1:80978454-80978473 Msa1218360:intron 20.0%
!! AATAATACGATAATAATGCA+AGG - chr8_1:80978619-80978638 Msa1218360:CDS 20.0%
!!! GAAATATGTTACTTTTCTAT+TGG - chr8_1:80979162-80979181 Msa1218360:five_prime_UTR 20.0%
!! AATCTAAAACAAGGAAAAGA+AGG + chr8_1:80976813-80976832 None:intergenic 25.0%
!!! TAGATTTTTTGCTTTTGTCT+AGG - chr8_1:80976827-80976846 Msa1218360:CDS 25.0%
!! TCTAAGATTTGTTTCAAATC+AGG - chr8_1:80976865-80976884 Msa1218360:CDS 25.0%
!!! AGGGTTTTGTAATTTGAATA+AGG - chr8_1:80976895-80976914 Msa1218360:CDS 25.0%
!! AATTCAATGATCTAGCTTAT+GGG + chr8_1:80976999-80977018 None:intergenic 25.0%
!! AAATTCAATGATCTAGCTTA+TGG + chr8_1:80977000-80977019 None:intergenic 25.0%
! AATACCCTTGTAACATTAAT+TGG + chr8_1:80977103-80977122 None:intergenic 25.0%
! TTGACTAAAAAAGAACCATT+TGG + chr8_1:80977191-80977210 None:intergenic 25.0%
! CAATTATCAAAAGTTCTCTA+GGG + chr8_1:80977328-80977347 None:intergenic 25.0%
! TTTAAATGGTTGTTACTGTT+AGG - chr8_1:80977479-80977498 Msa1218360:CDS 25.0%
! ATCCTATGATTCAAATTACT+GGG - chr8_1:80977622-80977641 Msa1218360:CDS 25.0%
! GAGTTCATATTTACAATGAA+AGG - chr8_1:80977722-80977741 Msa1218360:CDS 25.0%
! TCAGTATCATTGAATTTAGT+AGG + chr8_1:80977872-80977891 None:intergenic 25.0%
! TACTATATTGCCAAAATCTA+TGG - chr8_1:80977925-80977944 Msa1218360:intron 25.0%
!!! TTATGTTCCATTTGATTTTG+CGG - chr8_1:80978931-80978950 Msa1218360:CDS 25.0%
!!! TTCTTTCAACCTTGTTATTA+TGG - chr8_1:80979111-80979130 Msa1218360:five_prime_UTR 25.0%
TATATTTCGTTTCTCTCACA+CGG - chr8_1:80976214-80976233 Msa1218360:three_prime_UTR 30.0%
GCTTCAAATTTCGAATTTGA+AGG - chr8_1:80976236-80976255 Msa1218360:three_prime_UTR 30.0%
TTAGTATGATTGTTGCTAAG+AGG + chr8_1:80976328-80976347 None:intergenic 30.0%
TTTCAAATCAGGTGTGATAA+GGG - chr8_1:80976876-80976895 Msa1218360:CDS 30.0%
AATTTGAATAAGGCTCTGTT+TGG - chr8_1:80976905-80976924 Msa1218360:CDS 30.0%
CGTTTGGTAAAATTCATTGT+TGG - chr8_1:80977028-80977047 Msa1218360:CDS 30.0%
TGTCTATAAGCTCAAATATG+TGG - chr8_1:80977234-80977253 Msa1218360:CDS 30.0%
GCAATTATCAAAAGTTCTCT+AGG + chr8_1:80977329-80977348 None:intergenic 30.0%
TTGTTACTGTTAGGTAAGAA+TGG - chr8_1:80977488-80977507 Msa1218360:CDS 30.0%
TGTTACTGTTAGGTAAGAAT+GGG - chr8_1:80977489-80977508 Msa1218360:CDS 30.0%
! GTAATGTTTGCTTTGAACTT+AGG + chr8_1:80977539-80977558 None:intergenic 30.0%
GATCCTATGATTCAAATTAC+TGG - chr8_1:80977621-80977640 Msa1218360:CDS 30.0%
CTAATGTATTGAATTGTCAG+AGG - chr8_1:80977822-80977841 Msa1218360:intron 30.0%
GTATCATTGAATTTAGTAGG+AGG + chr8_1:80977869-80977888 None:intergenic 30.0%
AAATTCAATGATACTGACGT+TGG - chr8_1:80977875-80977894 Msa1218360:intron 30.0%
AATTCAATGATACTGACGTT+GGG - chr8_1:80977876-80977895 Msa1218360:intron 30.0%
! TTACTAGGATCCATAGATTT+TGG + chr8_1:80977938-80977957 None:intergenic 30.0%
AATCTCGAAATAGACTTACT+AGG + chr8_1:80977953-80977972 None:intergenic 30.0%
!!! GCCATTACAGTTTTGTTTAA+CGG + chr8_1:80978130-80978149 None:intergenic 30.0%
TGTCAGATTATAATAAAGGC+TGG - chr8_1:80978458-80978477 Msa1218360:intron 30.0%
!! ATTAACACCACCTATTTCTA+TGG + chr8_1:80978602-80978621 None:intergenic 30.0%
TACGATAATAATGCAAGGTT+TGG - chr8_1:80978624-80978643 Msa1218360:CDS 30.0%
ATAATAATGCAAGGTTTGGA+GGG - chr8_1:80978628-80978647 Msa1218360:CDS 30.0%
GTATGAATCAAATTCTATCC+AGG + chr8_1:80978974-80978993 None:intergenic 30.0%
AACAAGAATGAGAAATATCG+AGG - chr8_1:80979011-80979030 Msa1218360:CDS 30.0%
TCTAATCTAGACATAAAGCA+TGG + chr8_1:80979060-80979079 None:intergenic 30.0%
TCTTCTGTACCATAATAACA+AGG + chr8_1:80979123-80979142 None:intergenic 30.0%
! AAGGTTGATTCAAATCGGTA+GGG + chr8_1:80976458-80976477 None:intergenic 35.0%
! TAAGGTTGATTCAAATCGGT+AGG + chr8_1:80976459-80976478 None:intergenic 35.0%
! CGCTTAAGGTTGATTCAAAT+CGG + chr8_1:80976463-80976482 None:intergenic 35.0%
TTCATCTGTCAAAAAACCAC+CGG - chr8_1:80976779-80976798 Msa1218360:CDS 35.0%
GTTTCAAATCAGGTGTGATA+AGG - chr8_1:80976875-80976894 Msa1218360:CDS 35.0%
ATAAGCTCGTAAGAAAGTGA+TGG - chr8_1:80977162-80977181 Msa1218360:CDS 35.0%
AGAAAGTGATGGTTACCAAA+TGG - chr8_1:80977173-80977192 Msa1218360:CDS 35.0%
TAAGCAGATAAACTCTCTCA+TGG + chr8_1:80977273-80977292 None:intergenic 35.0%
TGCCCAGTAATTTGAATCAT+AGG + chr8_1:80977627-80977646 None:intergenic 35.0%
!! GATGCTTCTGGTTGTATTTT+TGG - chr8_1:80977764-80977783 Msa1218360:CDS 35.0%
!!! GGTTGTATTTTTGGTAAGCA+AGG - chr8_1:80977773-80977792 Msa1218360:CDS 35.0%
ATGTATTGAATTGTCAGAGG+AGG - chr8_1:80977825-80977844 Msa1218360:intron 35.0%
AGTAGGAGGAAGATCAATAA+TGG + chr8_1:80977855-80977874 None:intergenic 35.0%
TATTTCGAGATTCCAAATGC+AGG - chr8_1:80977961-80977980 Msa1218360:intron 35.0%
GCCGTTAAACAAAACTGTAA+TGG - chr8_1:80978126-80978145 Msa1218360:intron 35.0%
ACAAAACTGTAATGGCAAGT+TGG - chr8_1:80978134-80978153 Msa1218360:intron 35.0%
! ATGTTCTTGCTGTATTCTTG+GGG + chr8_1:80978273-80978292 None:intergenic 35.0%
! CATGTTCTTGCTGTATTCTT+GGG + chr8_1:80978274-80978293 None:intergenic 35.0%
! ACATGTTCTTGCTGTATTCT+TGG + chr8_1:80978275-80978294 None:intergenic 35.0%
! AAGGGTCACACTTTTCAATT+GGG - chr8_1:80978486-80978505 Msa1218360:intron 35.0%
GATAATAATGCAAGGTTTGG+AGG - chr8_1:80978627-80978646 Msa1218360:CDS 35.0%
TACCTTGTTGGAGAAACAAA+TGG - chr8_1:80978658-80978677 Msa1218360:CDS 35.0%
TTCACAAAGAAAACTACTCC+TGG - chr8_1:80978736-80978755 Msa1218360:CDS 35.0%
CCATTGAAGAAGACTTTCTT+GGG + chr8_1:80978793-80978812 None:intergenic 35.0%
CCAAGAAAGTCTTCTTCAAT+GGG - chr8_1:80978791-80978810 Msa1218360:CDS 35.0%
CAAGAAAGTCTTCTTCAATG+GGG - chr8_1:80978792-80978811 Msa1218360:CDS 35.0%
!! TAGAAGCATCAAAGTAGCAA+AGG + chr8_1:80978875-80978894 None:intergenic 35.0%
! TCGTCTTCTTGTTATAGTAG+TGG - chr8_1:80978908-80978927 Msa1218360:CDS 35.0%
!! TCATTCTTGTTTCTGTGACA+AGG + chr8_1:80979002-80979021 None:intergenic 35.0%
ACGCGTTCAAGAAATGGAAA+GGG + chr8_1:80976122-80976141 None:intergenic 40.0%
AACGCGTTCAAGAAATGGAA+AGG + chr8_1:80976123-80976142 None:intergenic 40.0%
GGTTAAACGCGTTCAAGAAA+TGG + chr8_1:80976128-80976147 None:intergenic 40.0%
ATCGTTACACGATTGTGCAT+CGG + chr8_1:80976366-80976385 None:intergenic 40.0%
TCTGAAGACTGCTGTTGAAA+CGG - chr8_1:80976646-80976665 Msa1218360:CDS 40.0%
!!! AGTCTTGTTGGGACTGTTTT+TGG - chr8_1:80976701-80976720 Msa1218360:CDS 40.0%
TTAGCAAGCTTGATCGTCTT+CGG + chr8_1:80976752-80976771 None:intergenic 40.0%
!! ACGATCAAGCTTGCTAATGA+TGG - chr8_1:80976755-80976774 Msa1218360:CDS 40.0%
! CTGTTTGGATCGACTTATTG+AGG - chr8_1:80976920-80976939 Msa1218360:CDS 40.0%
! CGACTTATTGAGGCTCTTTT+TGG - chr8_1:80976930-80976949 Msa1218360:CDS 40.0%
AAACTCTCTCATGGTCTGTT+TGG + chr8_1:80977264-80977283 None:intergenic 40.0%
!! GTAAGATCACCATTTTGACG+CGG + chr8_1:80977581-80977600 None:intergenic 40.0%
TGATTCAAATTACTGGGCAG+AGG - chr8_1:80977628-80977647 Msa1218360:CDS 40.0%
ATCGGTAACCAAAATCCTCT+CGG - chr8_1:80977656-80977675 Msa1218360:CDS 40.0%
! TTGATAATTGGAGGTTGAGC+TGG - chr8_1:80977684-80977703 Msa1218360:CDS 40.0%
TGATAATTGGAGGTTGAGCT+GGG - chr8_1:80977685-80977704 Msa1218360:CDS 40.0%
GGAGGAAGATCAATAATGGT+AGG + chr8_1:80977851-80977870 None:intergenic 40.0%
GGAAAATTCCTTCTTGTTGC+CGG - chr8_1:80977897-80977916 Msa1218360:intron 40.0%
TTGGCAATATAGTACCGTTC+CGG + chr8_1:80977919-80977938 None:intergenic 40.0%
! GCATTTTGTACACCTGCATT+TGG + chr8_1:80977976-80977995 None:intergenic 40.0%
CTTAACCCTGACTACAAATG+CGG - chr8_1:80978055-80978074 Msa1218360:intron 40.0%
TGTAACATTACAGCAGCCAA+GGG - chr8_1:80978166-80978185 Msa1218360:intron 40.0%
GCATTTACTTGATGTTCCCT+TGG + chr8_1:80978185-80978204 None:intergenic 40.0%
AAAAGGAACAAGGACAGCAT+CGG + chr8_1:80978329-80978348 None:intergenic 40.0%
TTCGGTTCTCAAAAGGAACA+AGG + chr8_1:80978339-80978358 None:intergenic 40.0%
ATAATAAAGGCTGGAGTGCA+AGG - chr8_1:80978467-80978486 Msa1218360:intron 40.0%
TAATAAAGGCTGGAGTGCAA+GGG - chr8_1:80978468-80978487 Msa1218360:intron 40.0%
! CAAGGGTCACACTTTTCAAT+TGG - chr8_1:80978485-80978504 Msa1218360:intron 40.0%
! AGGGTCACACTTTTCAATTG+GGG - chr8_1:80978487-80978506 Msa1218360:intron 40.0%
! GTGAGACTAATTTTGCAGAC+TGG - chr8_1:80978509-80978528 Msa1218360:intron 40.0%
AATGCAAGCGCCATAGAAAT+AGG - chr8_1:80978589-80978608 Msa1218360:CDS 40.0%
! CTCCATTTGTTTCTCCAACA+AGG + chr8_1:80978663-80978682 None:intergenic 40.0%
!! ATTACTGACTGTTGTTTCCC+AGG + chr8_1:80978712-80978731 None:intergenic 40.0%
CCCAAGAAAGTCTTCTTCAA+TGG - chr8_1:80978790-80978809 Msa1218360:CDS 40.0%
CCCATTGAAGAAGACTTTCT+TGG + chr8_1:80978794-80978813 None:intergenic 40.0%
AGCAAAGGAAAATTCCTTCC+TGG + chr8_1:80978860-80978879 None:intergenic 40.0%
AAGAAGACGACTAGCAACAA+TGG + chr8_1:80978898-80978917 None:intergenic 40.0%
!! TCCATTTGATTTTGCGGTTC+AGG - chr8_1:80978937-80978956 Msa1218360:CDS 40.0%
TCCTGAACCGCAAAATCAAA+TGG + chr8_1:80978941-80978960 None:intergenic 40.0%
CATCGCTGTTGTGTCTCTTT+GGG + chr8_1:80976270-80976289 None:intergenic 45.0%
TCATCGCTGTTGTGTCTCTT+TGG + chr8_1:80976271-80976290 None:intergenic 45.0%
GGACGTTGAAGAAGCTACAA+TGG + chr8_1:80976307-80976326 None:intergenic 45.0%
ATCGGTAGGGTTGCTTCTTT+GGG + chr8_1:80976445-80976464 None:intergenic 45.0%
AATCGGTAGGGTTGCTTCTT+TGG + chr8_1:80976446-80976465 None:intergenic 45.0%
ACCTTAAGCGTGCTCAACAA+CGG - chr8_1:80976473-80976492 Msa1218360:CDS 45.0%
GTCTCGATGAACTCAAGTCA+TGG - chr8_1:80976495-80976514 Msa1218360:CDS 45.0%
CTGTGGAAAACCAGCGAAAA+CGG + chr8_1:80976621-80976640 None:intergenic 45.0%
!!! TTTCGCTGGTTTTCCACAGA+CGG - chr8_1:80976622-80976641 Msa1218360:CDS 45.0%
TGTCAAAAAACCACCGGTCA+AGG - chr8_1:80976785-80976804 Msa1218360:CDS 45.0%
!! GGAAAAGAAGGTACCTTGAC+CGG + chr8_1:80976801-80976820 None:intergenic 45.0%
AAGTTTCTGCCGCGTCAAAA+TGG - chr8_1:80977569-80977588 Msa1218360:CDS 45.0%
GTAACCAAAATCCTCTCGGA+AGG - chr8_1:80977660-80977679 Msa1218360:CDS 45.0%
CAATTATCAAGCCTTCCGAG+AGG + chr8_1:80977674-80977693 None:intergenic 45.0%
! CTCTCGGAAGGCTTGATAAT+TGG - chr8_1:80977672-80977691 Msa1218360:CDS 45.0%
! TCGGAAGGCTTGATAATTGG+AGG - chr8_1:80977675-80977694 Msa1218360:CDS 45.0%
ATTCCTTCTTGTTGCCGGAA+CGG - chr8_1:80977902-80977921 Msa1218360:intron 45.0%
CTAATCTTCCAGTTCTGTGG+TGG + chr8_1:80978028-80978047 None:intergenic 45.0%
CCACTAATCTTCCAGTTCTG+TGG + chr8_1:80978031-80978050 None:intergenic 45.0%
CCACAGAACTGGAAGATTAG+TGG - chr8_1:80978028-80978047 Msa1218360:intron 45.0%
TCAGTAGGACTAACACGAAC+CGG + chr8_1:80978085-80978104 None:intergenic 45.0%
GTTGGATCTGGATTCTCAGT+AGG + chr8_1:80978100-80978119 None:intergenic 45.0%
ACTGAGAATCCAGATCCAAC+AGG - chr8_1:80978100-80978119 Msa1218360:intron 45.0%
CTGAGAATCCAGATCCAACA+GGG - chr8_1:80978101-80978120 Msa1218360:intron 45.0%
TTGTTTAACGGCAACCCTGT+TGG + chr8_1:80978118-80978137 None:intergenic 45.0%
! AACTGTAATGGCAAGTTGGC+AGG - chr8_1:80978138-80978157 Msa1218360:intron 45.0%
GTGTAACATTACAGCAGCCA+AGG - chr8_1:80978165-80978184 Msa1218360:intron 45.0%
TTGGCAGTTCGGTTCTCAAA+AGG + chr8_1:80978346-80978365 None:intergenic 45.0%
!! TTTTGAGAACCGAACTGCCA+AGG - chr8_1:80978345-80978364 Msa1218360:intron 45.0%
CTGGTTTACTGCTGTGCAAA+TGG - chr8_1:80978528-80978547 Msa1218360:CDS 45.0%
GAGGGATTGAACTACCTTGT+TGG - chr8_1:80978646-80978665 Msa1218360:CDS 45.0%
TAACCCTCGTACAGATCCTA+GGG - chr8_1:80978684-80978703 Msa1218360:CDS 45.0%
GAAAGTCTTCTTCAATGGGG+AGG - chr8_1:80978795-80978814 Msa1218360:CDS 45.0%
!!! GTTCAGGATTGCTGTTTTCC+TGG - chr8_1:80978953-80978972 Msa1218360:CDS 45.0%
AAATATCGAGGACTGAGTCG+CGG - chr8_1:80979023-80979042 Msa1218360:exon 45.0%
TTCTTTGGGTCGGTGACGTT+AGG + chr8_1:80976431-80976450 None:intergenic 50.0%
GTAGGGTTGCTTCTTTGGGT+CGG + chr8_1:80976441-80976460 None:intergenic 50.0%
ACCGTTGTTGAGCACGCTTA+AGG + chr8_1:80976477-80976496 None:intergenic 50.0%
CTCGTCGTGCTGAAACTCAA+CGG + chr8_1:80976528-80976547 None:intergenic 50.0%
TCCAATGCTGTTCTCGCTGA+CGG - chr8_1:80976563-80976582 Msa1218360:CDS 50.0%
!! AACGGTGCCGTTTCCAACTA+GGG + chr8_1:80976603-80976622 None:intergenic 50.0%
!! AAACGGTGCCGTTTCCAACT+AGG + chr8_1:80976604-80976623 None:intergenic 50.0%
GAAGACTGCTGTTGAAACGG+CGG - chr8_1:80976649-80976668 Msa1218360:CDS 50.0%
AAGACTGCTGTTGAAACGGC+GGG - chr8_1:80976650-80976669 Msa1218360:CDS 50.0%
GGGTGATTTGACTCAGATGC+AGG - chr8_1:80976670-80976689 Msa1218360:CDS 50.0%
TTTGACTCAGATGCAGGCTC+AGG - chr8_1:80976676-80976695 Msa1218360:CDS 50.0%
!! AGGCTCAGGTCAGTCTTGTT+GGG - chr8_1:80976690-80976709 Msa1218360:CDS 50.0%
AGCTTGATCGTCTTCGGCAA+CGG + chr8_1:80976746-80976765 None:intergenic 50.0%
!! AAAGAAGGTACCTTGACCGG+TGG + chr8_1:80976798-80976817 None:intergenic 50.0%
TACTGGGCAGAGGTTACGAT+CGG - chr8_1:80977638-80977657 Msa1218360:CDS 50.0%
! CAAGCCTTCCGAGAGGATTT+TGG + chr8_1:80977667-80977686 None:intergenic 50.0%
AGGAGCTTATCCGTCTGTTC+TGG - chr8_1:80977742-80977761 Msa1218360:CDS 50.0%
!! CCAGAAGCATCCAGAACAGA+CGG + chr8_1:80977755-80977774 None:intergenic 50.0%
! GTTCTGTGGTGGTGAAAGCT+CGG + chr8_1:80978017-80978036 None:intergenic 50.0%
AGCTTTCACCACCACAGAAC+TGG - chr8_1:80978017-80978036 Msa1218360:intron 50.0%
GAGGACCGCATTTGTAGTCA+GGG + chr8_1:80978063-80978082 None:intergenic 50.0%
TGACTACAAATGCGGTCCTC+CGG - chr8_1:80978063-80978082 Msa1218360:intron 50.0%
! CCACATGCACACGTTTTGCA+AGG + chr8_1:80978247-80978266 None:intergenic 50.0%
CCTTGCAAAACGTGTGCATG+TGG - chr8_1:80978244-80978263 Msa1218360:intron 50.0%
ACGCATAAGCCTTGGCAGTT+CGG + chr8_1:80978357-80978376 None:intergenic 50.0%
AACTGCCAAGGCTTATGCGT+GGG - chr8_1:80978357-80978376 Msa1218360:intron 50.0%
AGTTATCACCGCAAGGTGGT+GGG + chr8_1:80978411-80978430 None:intergenic 50.0%
CAAATGGACAAAGCAGCTGC+AGG - chr8_1:80978544-80978563 Msa1218360:CDS 50.0%
GCAAGCGCCATAGAAATAGG+TGG - chr8_1:80978592-80978611 Msa1218360:CDS 50.0%
CTAACCCTCGTACAGATCCT+AGG - chr8_1:80978683-80978702 Msa1218360:CDS 50.0%
!! CCACGAACAACACTGATTCC+AGG + chr8_1:80978757-80978776 None:intergenic 50.0%
! CCTGGAATCAGTGTTGTTCG+TGG - chr8_1:80978754-80978773 Msa1218360:CDS 50.0%
! GGAATCAGTGTTGTTCGTGG+TGG - chr8_1:80978757-80978776 Msa1218360:CDS 50.0%
! AGTGTTGTTCGTGGTGGTGA+CGG - chr8_1:80978763-80978782 Msa1218360:CDS 50.0%
! CCACTGGTTGGAAGTACAGA+AGG + chr8_1:80978832-80978851 None:intergenic 50.0%
CCTTCTGTACTTCCAACCAG+TGG - chr8_1:80978829-80978848 Msa1218360:CDS 50.0%
GTCTCATACTCCTCCTCCGT+CGG - chr8_1:80976392-80976411 Msa1218360:exon 55.0%
TTTGGGTCGGTGACGTTAGG+CGG + chr8_1:80976428-80976447 None:intergenic 55.0%
ACCGTCAGCGAGAACAGCAT+TGG + chr8_1:80976567-80976586 None:intergenic 55.0%
GTTTCCAACTAGGGCAGGGA+GGG + chr8_1:80976594-80976613 None:intergenic 55.0%
CTCCCTGCCCTAGTTGGAAA+CGG - chr8_1:80976593-80976612 Msa1218360:CDS 55.0%
! TGCCGTTTCCAACTAGGGCA+GGG + chr8_1:80976598-80976617 None:intergenic 55.0%
GCAGTCTTCAGATCCGTCTG+TGG + chr8_1:80976638-80976657 None:intergenic 55.0%
! CAGGCTCAGGTCAGTCTTGT+TGG - chr8_1:80976689-80976708 Msa1218360:CDS 55.0%
TTCGGCAACGGAACATCAGG+CGG + chr8_1:80976734-80976753 None:intergenic 55.0%
GTCTTCGGCAACGGAACATC+AGG + chr8_1:80976737-80976756 None:intergenic 55.0%
ATTGGAGGTTGAGCTGGGAC+TGG - chr8_1:80977690-80977709 Msa1218360:CDS 55.0%
! CCGTCTGTTCTGGATGCTTC+TGG - chr8_1:80977752-80977771 Msa1218360:CDS 55.0%
GTACCGTTCCGGCAACAAGA+AGG + chr8_1:80977908-80977927 None:intergenic 55.0%
!! TCGGATCGGTTAAGCACTGG+CGG + chr8_1:80977998-80978017 None:intergenic 55.0%
AGCTCGGATCGGTTAAGCAC+TGG + chr8_1:80978001-80978020 None:intergenic 55.0%
! GTGGTGGTGAAAGCTCGGAT+CGG + chr8_1:80978012-80978031 None:intergenic 55.0%
GGAGGACCGCATTTGTAGTC+AGG + chr8_1:80978064-80978083 None:intergenic 55.0%
GTAGGACTAACACGAACCGG+AGG + chr8_1:80978082-80978101 None:intergenic 55.0%
AACGGCAACCCTGTTGGATC+TGG + chr8_1:80978112-80978131 None:intergenic 55.0%
GTACTACTGCACCTGCCATG+TGG - chr8_1:80978296-80978315 Msa1218360:intron 55.0%
! GGAACAAGGACAGCATCGGA+GGG + chr8_1:80978325-80978344 None:intergenic 55.0%
! AGGAACAAGGACAGCATCGG+AGG + chr8_1:80978326-80978345 None:intergenic 55.0%
GAACTGCCAAGGCTTATGCG+TGG - chr8_1:80978356-80978375 Msa1218360:intron 55.0%
CAGTTATCACCGCAAGGTGG+TGG + chr8_1:80978412-80978431 None:intergenic 55.0%
CCACCTTGCGGTGATAACTG+CGG - chr8_1:80978412-80978431 Msa1218360:intron 55.0%
ACACCGCAGTTATCACCGCA+AGG + chr8_1:80978418-80978437 None:intergenic 55.0%
ACTGCGGTGTGAGCATCAAC+TGG - chr8_1:80978428-80978447 Msa1218360:intron 55.0%
GCACCCTAGGATCTGTACGA+GGG + chr8_1:80978690-80978709 None:intergenic 55.0%
! GTACAGATCCTAGGGTGCCT+GGG - chr8_1:80978692-80978711 Msa1218360:CDS 55.0%
!! TGTTGTTTCCCAGGCACCCT+AGG + chr8_1:80978703-80978722 None:intergenic 55.0%
! GTGTTGTTCGTGGTGGTGAC+GGG - chr8_1:80978764-80978783 Msa1218360:CDS 55.0%
TTCCAACCAGTGGTGCTTCC+AGG - chr8_1:80978839-80978858 Msa1218360:CDS 55.0%
!! TTCCTGGAAGCACCACTGGT+TGG + chr8_1:80978844-80978863 None:intergenic 55.0%
AACCAGTGGTGCTTCCAGGA+AGG - chr8_1:80978843-80978862 Msa1218360:CDS 55.0%
!! TTCCTTCCTGGAAGCACCAC+TGG + chr8_1:80978848-80978867 None:intergenic 55.0%
CAGTTGAACTCCGACGGAGG+AGG + chr8_1:80976405-80976424 None:intergenic 60.0%
AGGCGGCAGTTGAACTCCGA+CGG + chr8_1:80976411-80976430 None:intergenic 60.0%
ACTACCCTCCCTGCCCTAGT+TGG - chr8_1:80976587-80976606 Msa1218360:CDS 60.0%
CGTTTCCAACTAGGGCAGGG+AGG + chr8_1:80976595-80976614 None:intergenic 60.0%
!! GTGCCGTTTCCAACTAGGGC+AGG + chr8_1:80976599-80976618 None:intergenic 60.0%
! GGAAACGGCACCGTTTTCGC+TGG - chr8_1:80976608-80976627 Msa1218360:CDS 60.0%
! AGCATCGGAGGGAAGCCACA+TGG + chr8_1:80978314-80978333 None:intergenic 60.0%
TGCCAAGGCTTATGCGTGGG+CGG - chr8_1:80978360-80978379 Msa1218360:intron 60.0%
!! CAAGGTGGTGGGTTTGGCGT+TGG + chr8_1:80978400-80978419 None:intergenic 60.0%
ACGCCAAACCCACCACCTTG+CGG - chr8_1:80978400-80978419 Msa1218360:intron 60.0%
!! TCACCGCAAGGTGGTGGGTT+TGG + chr8_1:80978406-80978425 None:intergenic 60.0%
CCGCAGTTATCACCGCAAGG+TGG + chr8_1:80978415-80978434 None:intergenic 60.0%
GGCACCCTAGGATCTGTACG+AGG + chr8_1:80978691-80978710 None:intergenic 60.0%
! CGTACAGATCCTAGGGTGCC+TGG - chr8_1:80978691-80978710 Msa1218360:CDS 60.0%
CGGCAGTTGAACTCCGACGG+AGG + chr8_1:80976408-80976427 None:intergenic 65.0%
TCGGAGGGAAGCCACATGGC+AGG + chr8_1:80978310-80978329 None:intergenic 65.0%
GCCAAGGCTTATGCGTGGGC+GGG - chr8_1:80978361-80978380 Msa1218360:intron 65.0%
CCAAGGCTTATGCGTGGGCG+GGG - chr8_1:80978362-80978381 Msa1218360:intron 65.0%
TCGAGGACTGAGTCGCGGTG+TGG - chr8_1:80979028-80979047 Msa1218360:exon 65.0%
CCCCGCCCACGCATAAGCCT+TGG + chr8_1:80978365-80978384 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 80976115 80979203 80976115 ID=Msa1218360;Name=Msa1218360
chr8_1 mRNA 80976115 80979203 80976115 ID=Msa1218360-mRNA-1;Parent=Msa1218360;Name=Msa1218360-mRNA-1;_AED=0.24;_eAED=0.24;_QI=172|1|1|1|1|1|2|279|647
chr8_1 exon 80976115 80977817 80976115 ID=Msa1218360-mRNA-1:exon:28562;Parent=Msa1218360-mRNA-1
chr8_1 exon 80978512 80979203 80978512 ID=Msa1218360-mRNA-1:exon:28561;Parent=Msa1218360-mRNA-1
chr8_1 five_prime_UTR 80979032 80979203 80979032 ID=Msa1218360-mRNA-1:five_prime_utr;Parent=Msa1218360-mRNA-1
chr8_1 CDS 80978512 80979031 80978512 ID=Msa1218360-mRNA-1:cds;Parent=Msa1218360-mRNA-1
chr8_1 CDS 80976394 80977817 80976394 ID=Msa1218360-mRNA-1:cds;Parent=Msa1218360-mRNA-1
chr8_1 three_prime_UTR 80976115 80976393 80976115 ID=Msa1218360-mRNA-1:three_prime_utr;Parent=Msa1218360-mRNA-1
Gene Sequence

>Msa1218360

ATGATTTCGCTACGAAACCATTGTAGCTTCTTCAACGTCCTCTTAGCAACAATCATACTAACAACGACGTCGTTTACCGATGCACAATCGTGTAACGATATACTCGTCTCATACTCCTCCTCCGTCGGAGTTCAACTGCCGCCTAACGTCACCGACCCAAAGAAGCAACCCTACCGATTTGAATCAACCTTAAGCGTGCTCAACAACGGTCTCGATGAACTCAAGTCATGGAAAGTCGCCGTTGAGTTTCAGCACGACGAGTATCTTGTTTCTGCTTCCAATGCTGTTCTCGCTGACGGTACTACCCTCCCTGCCCTAGTTGGAAACGGCACCGTTTTCGCTGGTTTTCCACAGACGGATCTGAAGACTGCTGTTGAAACGGCGGGTGATTTGACTCAGATGCAGGCTCAGGTCAGTCTTGTTGGGACTGTTTTTGGTGTAGCGCCGCCTGATGTTCCGTTGCCGAAGACGATCAAGCTTGCTAATGATGGATTCATCTGTCAAAAAACCACCGGTCAAGGTAAGAATGGGACTAATGTTTGTTGCACAAGAGATCCTAAGTTCAAAGCAAACATTACTACAGATGAAAAGTTTCTGCCGCGTCAAAATGGTGATCTTACGATCATGTATGATGTGATTAGATCCTATGATTCAAATTACTGGGCAGAGGTTACGATCGGTAACCAAAATCCTCTCGGAAGGCTTGATAATTGGAGGTTGAGCTGGGACTGGATGAATGACGAGTTCATATTTACAATGAAAGGAGCTTATCCGTCTGTTCTGGATGCTTCTGGTTGTATTTTTGGTAAGCAAGGTACATACTACAAAGAGCTTGATTTTGCTAATGTATTGAATTGTCAGAGGAGGCCTACCATTATTGATCTTCCTCCTACTAAATTCAATGATACTGACGTTGGGAAAATTCCTTCTTGTTGCCGGAACGGTACTATATTGCCAAAATCTATGGATCCTAGTAAGTCTATTTCGAGATTCCAAATGCAGGTGTACAAAATGCCGCCAGTGCTTAACCGATCCGAGCTTTCACCACCACAGAACTGGAAGATTAGTGGTTCACTTAACCCTGACTACAAATGCGGTCCTCCGGTTCGTGTTAGTCCTACTGAGAATCCAGATCCAACAGGGTTGCCGTTAAACAAAACTGTAATGGCAAGTTGGCAGGTTGTGTGTAACATTACAGCAGCCAAGGGAACATCAAGTAAATGCTGTGTCTCATTTTCAGCTTATTACAATGAATCAGTTATTCCTTGCAAAACGTGTGCATGTGGATGCCCCAAGAATACAGCAAGAACATGTAGTACTACTGCACCTGCCATGTGGCTTCCCTCCGATGCTGTCCTTGTTCCTTTTGAGAACCGAACTGCCAAGGCTTATGCGTGGGCGGGGATAAAACATCTACCAACGCCAAACCCACCACCTTGCGGTGATAACTGCGGTGTGAGCATCAACTGGCATTTACTGTCAGATTATAATAAAGGCTGGAGTGCAAGGGTCACACTTTTCAATTGGGGTGAGACTAATTTTGCAGACTGGTTTACTGCTGTGCAAATGGACAAAGCAGCTGCAGGTTTTGAGAAAATGTACTCGTTCAATGCAAGCGCCATAGAAATAGGTGGTGTTAATAATACGATAATAATGCAAGGTTTGGAGGGATTGAACTACCTTGTTGGAGAAACAAATGGAGCTAACCCTCGTACAGATCCTAGGGTGCCTGGGAAACAACAGTCAGTAATCTCATTCACAAAGAAAACTACTCCTGGAATCAGTGTTGTTCGTGGTGGTGACGGGTTTCCCAAGAAAGTCTTCTTCAATGGGGAGGAATGTTCTCTTCCTTCTGTACTTCCAACCAGTGGTGCTTCCAGGAAGGAATTTTCCTTTGCTACTTTGATGCTTCTACCATTGTTGCTAGTCGTCTTCTTGTTATAG
Protein sequence

>Msa1218360

MISLRNHCSFFNVLLATIILTTTSFTDAQSCNDILVSYSSSVGVQLPPNVTDPKKQPYRFESTLSVLNNGLDELKSWKVAVEFQHDEYLVSASNAVLADGTTLPALVGNGTVFAGFPQTDLKTAVETAGDLTQMQAQVSLVGTVFGVAPPDVPLPKTIKLANDGFICQKTTGQGKNGTNVCCTRDPKFKANITTDEKFLPRQNGDLTIMYDVIRSYDSNYWAEVTIGNQNPLGRLDNWRLSWDWMNDEFIFTMKGAYPSVLDASGCIFGKQGTYYKELDFANVLNCQRRPTIIDLPPTKFNDTDVGKIPSCCRNGTILPKSMDPSKSISRFQMQVYKMPPVLNRSELSPPQNWKISGSLNPDYKCGPPVRVSPTENPDPTGLPLNKTVMASWQVVCNITAAKGTSSKCCVSFSAYYNESVIPCKTCACGCPKNTARTCSTTAPAMWLPSDAVLVPFENRTAKAYAWAGIKHLPTPNPPPCGDNCGVSINWHLLSDYNKGWSARVTLFNWGETNFADWFTAVQMDKAAAGFEKMYSFNASAIEIGGVNNTIIMQGLEGLNYLVGETNGANPRTDPRVPGKQQSVISFTKKTTPGISVVRGGDGFPKKVFFNGEECSLPSVLPTSGASRKEFSFATLMLLPLLLVVFLL*