Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0444010 | XP_039687781.1 | 87.225 | 227 | 11 | 2 | 1 | 209 | 238 | 464 | 2.10e-135 | 398 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0444010 | sp|Q9ZWB4|3AT1_ARATH | 29.386 | 228 | 131 | 6 | 1 | 207 | 247 | 465 | 9.20e-27 | 109 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0444010 | A0A396IPG6 | 87.225 | 227 | 11 | 2 | 1 | 209 | 238 | 464 | 1.00e-135 | 398 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005050 | Msa0444010 | 0.801898 | 7.245552e-49 | -8.615850e-47 |
| Msa0012440 | Msa0444010 | 0.844069 | 9.499190e-59 | -8.615850e-47 |
| Msa0016120 | Msa0444010 | 0.808427 | 3.114454e-50 | -8.615850e-47 |
| Msa0036430 | Msa0444010 | 0.850048 | 2.184149e-60 | -8.615850e-47 |
| Msa0050040 | Msa0444010 | 0.838479 | 2.806278e-57 | -8.615850e-47 |
| Msa0053110 | Msa0444010 | 0.815605 | 8.486415e-52 | -8.615850e-47 |
| Msa0057240 | Msa0444010 | 0.841134 | 5.713725e-58 | -8.615850e-47 |
| Msa0084500 | Msa0444010 | 0.830178 | 3.399796e-55 | -8.615850e-47 |
| Msa0098440 | Msa0444010 | 0.813925 | 1.999751e-51 | -8.615850e-47 |
| Msa0102990 | Msa0444010 | 0.839101 | 1.938188e-57 | -8.615850e-47 |
| Msa0106790 | Msa0444010 | 0.829912 | 3.947771e-55 | -8.615850e-47 |
| Msa0109950 | Msa0444010 | 0.802793 | 4.739481e-49 | -8.615850e-47 |
| Msa0118400 | Msa0444010 | 0.801928 | 7.143705e-49 | -8.615850e-47 |
| Msa0120330 | Msa0444010 | 0.803768 | 2.978218e-49 | -8.615850e-47 |
| Msa0130570 | Msa0444010 | 0.840351 | 9.161079e-58 | -8.615850e-47 |
| Msa0134130 | Msa0444010 | 0.841609 | 4.282333e-58 | -8.615850e-47 |
| Msa0141600 | Msa0444010 | 0.805236 | 1.471797e-49 | -8.615850e-47 |
| Msa0148780 | Msa0444010 | 0.803417 | 3.521843e-49 | -8.615850e-47 |
| Msa0149560 | Msa0444010 | 0.845170 | 4.797906e-59 | -8.615850e-47 |
| Msa0153420 | Msa0444010 | 0.800512 | 1.392171e-48 | -8.615850e-47 |
| Msa0161100 | Msa0444010 | 0.807701 | 4.443934e-50 | -8.615850e-47 |
| Msa0161200 | Msa0444010 | 0.828000 | 1.146620e-54 | -8.615850e-47 |
| Msa0176470 | Msa0444010 | 0.823216 | 1.560817e-53 | -8.615850e-47 |
| Msa0203030 | Msa0444010 | 0.846284 | 2.392219e-59 | -8.615850e-47 |
| Msa0203160 | Msa0444010 | 0.835472 | 1.644656e-56 | -8.615850e-47 |
| Msa0219190 | Msa0444010 | 0.866045 | 3.797290e-65 | -8.615850e-47 |
| Msa0235890 | Msa0444010 | 0.825670 | 4.130480e-54 | -8.615850e-47 |
| Msa0236110 | Msa0444010 | 0.808273 | 3.358663e-50 | -8.615850e-47 |
| Msa0370600 | Msa0444010 | 0.814763 | 1.305127e-51 | -8.615850e-47 |
| Msa0378500 | Msa0444010 | 0.801482 | 8.818595e-49 | -8.615850e-47 |
| Msa0382010 | Msa0444010 | 0.805226 | 1.478659e-49 | -8.615850e-47 |
| Msa0408630 | Msa0444010 | 0.808097 | 3.661916e-50 | -8.615850e-47 |
| Msa0413930 | Msa0444010 | 0.865735 | 4.761404e-65 | -8.615850e-47 |
| Msa0418200 | Msa0444010 | 0.825442 | 4.678035e-54 | -8.615850e-47 |
| Msa0436460 | Msa0444010 | 0.812039 | 5.180437e-51 | -8.615850e-47 |
| Msa0436500 | Msa0444010 | 0.842474 | 2.529650e-58 | -8.615850e-47 |
| Msa0444010 | Msa0458950 | 0.841357 | 4.992367e-58 | -8.615850e-47 |
| Msa0444010 | Msa0464540 | 0.817606 | 3.022771e-52 | -8.615850e-47 |
| Msa0444010 | Msa0537920 | 0.800252 | 1.572645e-48 | -8.615850e-47 |
| Msa0444010 | Msa0538220 | 0.816113 | 6.538045e-52 | -8.615850e-47 |
| Msa0444010 | Msa0585730 | 0.811523 | 6.709980e-51 | -8.615850e-47 |
| Msa0444010 | Msa0619980 | 0.828201 | 1.025430e-54 | -8.615850e-47 |
| Msa0444010 | Msa0625890 | 0.806264 | 8.950114e-50 | -8.615850e-47 |
| Msa0444010 | Msa0645050 | 0.805702 | 1.175097e-49 | -8.615850e-47 |
| Msa0444010 | Msa0663590 | 0.813096 | 3.042307e-51 | -8.615850e-47 |
| Msa0444010 | Msa0663680 | 0.815196 | 1.046164e-51 | -8.615850e-47 |
| Msa0444010 | Msa0669840 | 0.814753 | 1.311872e-51 | -8.615850e-47 |
| Msa0444010 | Msa0678890 | 0.806864 | 6.688649e-50 | -8.615850e-47 |
| Msa0444010 | Msa0682530 | 0.803157 | 3.986189e-49 | -8.615850e-47 |
| Msa0444010 | Msa0685330 | 0.840441 | 8.680942e-58 | -8.615850e-47 |
| Msa0444010 | Msa0688500 | 0.812140 | 4.925571e-51 | -8.615850e-47 |
| Msa0444010 | Msa0691160 | 0.820097 | 8.210892e-53 | -8.615850e-47 |
| Msa0444010 | Msa0706370 | 0.825515 | 4.494377e-54 | -8.615850e-47 |
| Msa0444010 | Msa0707220 | 0.850508 | 1.622947e-60 | -8.615850e-47 |
| Msa0444010 | Msa0741900 | 0.819469 | 1.142837e-52 | -8.615850e-47 |
| Msa0444010 | Msa0747780 | 0.813976 | 1.948879e-51 | -8.615850e-47 |
| Msa0444010 | Msa0757870 | 0.802645 | 5.085778e-49 | -8.615850e-47 |
| Msa0444010 | Msa0764820 | 0.800999 | 1.107121e-48 | -8.615850e-47 |
| Msa0444010 | Msa0802840 | 0.807308 | 5.385336e-50 | -8.615850e-47 |
| Msa0444010 | Msa0810020 | 0.845590 | 3.693011e-59 | -8.615850e-47 |
| Msa0444010 | Msa0822990 | 0.824234 | 9.013791e-54 | -8.615850e-47 |
| Msa0444010 | Msa0833040 | 0.800628 | 1.318037e-48 | -8.615850e-47 |
| Msa0444010 | Msa0841320 | 0.806760 | 7.035374e-50 | -8.615850e-47 |
| Msa0444010 | Msa0850500 | 0.825067 | 5.736009e-54 | -8.615850e-47 |
| Msa0444010 | Msa0862100 | 0.846705 | 1.836696e-59 | -8.615850e-47 |
| Msa0444010 | Msa0867350 | 0.830549 | 2.758935e-55 | -8.615850e-47 |
| Msa0444010 | Msa0872310 | 0.842041 | 3.294800e-58 | -8.615850e-47 |
| Msa0444010 | Msa0873190 | 0.835536 | 1.584756e-56 | -8.615850e-47 |
| Msa0444010 | Msa0885060 | 0.858936 | 5.850815e-63 | -8.615850e-47 |
| Msa0444010 | Msa0896970 | 0.810738 | 9.927127e-51 | -8.615850e-47 |
| Msa0444010 | Msa0898730 | 0.825089 | 5.669819e-54 | -8.615850e-47 |
| Msa0444010 | Msa0905550 | 0.846517 | 2.067152e-59 | -8.615850e-47 |
| Msa0444010 | Msa0906370 | 0.827221 | 1.763865e-54 | -8.615850e-47 |
| Msa0444010 | Msa0911990 | 0.807407 | 5.131328e-50 | -8.615850e-47 |
| Msa0444010 | Msa0937550 | 0.829882 | 4.014351e-55 | -8.615850e-47 |
| Msa0444010 | Msa0938430 | 0.828300 | 9.707159e-55 | -8.615850e-47 |
| Msa0444010 | Msa0961690 | 0.800272 | 1.558031e-48 | -8.615850e-47 |
| Msa0444010 | Msa0974750 | 0.822582 | 2.192923e-53 | -8.615850e-47 |
| Msa0444010 | Msa0975580 | 0.830929 | 2.225819e-55 | -8.615850e-47 |
| Msa0444010 | Msa1007350 | 0.822589 | 2.184767e-53 | -8.615850e-47 |
| Msa0444010 | Msa1014270 | 0.805864 | 1.086369e-49 | -8.615850e-47 |
| Msa0444010 | Msa1018790 | 0.826974 | 2.020839e-54 | -8.615850e-47 |
| Msa0444010 | Msa1032450 | 0.831670 | 1.463778e-55 | -8.615850e-47 |
| Msa0444010 | Msa1033560 | 0.852139 | 5.615116e-61 | -8.615850e-47 |
| Msa0444010 | Msa1037900 | 0.802150 | 6.431909e-49 | -8.615850e-47 |
| Msa0444010 | Msa1037920 | 0.826366 | 2.822232e-54 | -8.615850e-47 |
| Msa0444010 | Msa1041530 | 0.849862 | 2.462838e-60 | -8.615850e-47 |
| Msa0444010 | Msa1042670 | 0.814904 | 1.214705e-51 | -8.615850e-47 |
| Msa0444010 | Msa1055260 | 0.814468 | 1.516995e-51 | -8.615850e-47 |
| Msa0444010 | Msa1055280 | 0.821266 | 4.425061e-53 | -8.615850e-47 |
| Msa0444010 | Msa1055500 | 0.853628 | 2.107424e-61 | -8.615850e-47 |
| Msa0444010 | Msa1073340 | 0.817373 | 3.410653e-52 | -8.615850e-47 |
| Msa0444010 | Msa1073350 | 0.817574 | 3.073611e-52 | -8.615850e-47 |
| Msa0444010 | Msa1081570 | 0.836059 | 1.168415e-56 | -8.615850e-47 |
| Msa0444010 | Msa1106810 | 0.809376 | 1.950956e-50 | -8.615850e-47 |
| Msa0444010 | Msa1113850 | 0.839238 | 1.785769e-57 | -8.615850e-47 |
| Msa0444010 | Msa1123880 | 0.817872 | 2.632843e-52 | -8.615850e-47 |
| Msa0444010 | Msa1127140 | 0.845638 | 3.584121e-59 | -8.615850e-47 |
| Msa0444010 | Msa1129960 | 0.807291 | 5.429500e-50 | -8.615850e-47 |
| Msa0444010 | Msa1129980 | 0.818314 | 2.090829e-52 | -8.615850e-47 |
| Msa0444010 | Msa1130010 | 0.801135 | 1.038626e-48 | -8.615850e-47 |
| Msa0444010 | Msa1136230 | 0.816564 | 5.180840e-52 | -8.615850e-47 |
| Msa0444010 | Msa1139810 | 0.832907 | 7.231381e-56 | -8.615850e-47 |
| Msa0444010 | Msa1145020 | 0.840354 | 9.145834e-58 | -8.615850e-47 |
| Msa0444010 | Msa1160400 | 0.854197 | 1.444998e-61 | -8.615850e-47 |
| Msa0444010 | Msa1166400 | 0.834964 | 2.209682e-56 | -8.615850e-47 |
| Msa0444010 | Msa1169990 | 0.816640 | 4.982324e-52 | -8.615850e-47 |
| Msa0444010 | Msa1201110 | 0.805498 | 1.296498e-49 | -8.615850e-47 |
| Msa0444010 | Msa1221560 | 0.806283 | 8.866969e-50 | -8.615850e-47 |
| Msa0444010 | Msa1228610 | 0.848270 | 6.821541e-60 | -8.615850e-47 |
| Msa0444010 | Msa1281720 | 0.805851 | 1.093252e-49 | -8.615850e-47 |
| Msa0444010 | Msa1321000 | 0.825022 | 5.880179e-54 | -8.615850e-47 |
| Msa0444010 | Msa1340670 | 0.802949 | 4.400084e-49 | -8.615850e-47 |
| Msa0444010 | Msa1355400 | 0.820841 | 5.542932e-53 | -8.615850e-47 |
| Msa0444010 | Msa1365200 | 0.808080 | 3.691825e-50 | -8.615850e-47 |
| Msa0444010 | Msa1379990 | 0.822461 | 2.340183e-53 | -8.615850e-47 |
| Msa0444010 | Msa1414930 | 0.823933 | 1.060944e-53 | -8.615850e-47 |
| Msa0444010 | Msa1420060 | 0.891308 | 4.471761e-74 | -8.615850e-47 |
| Msa0444010 | Msa1421550 | 0.818417 | 1.982239e-52 | -8.615850e-47 |
| Msa0444010 | Msa1424690 | 0.806391 | 8.415662e-50 | -8.615850e-47 |
| Msa0444010 | Msa1429420 | 0.846821 | 1.706526e-59 | -8.615850e-47 |
| Msa0444010 | Msa1455590 | 0.800899 | 1.160896e-48 | -8.615850e-47 |
| Msa0238890 | Msa0444010 | 0.803546 | 3.311611e-49 | -8.615850e-47 |
| Msa0273990 | Msa0444010 | 0.801883 | 7.297196e-49 | -8.615850e-47 |
| Msa0298240 | Msa0444010 | 0.840651 | 7.646023e-58 | -8.615850e-47 |
| Msa0300620 | Msa0444010 | 0.801488 | 8.794970e-49 | -8.615850e-47 |
| Msa0314630 | Msa0444010 | 0.818167 | 2.257141e-52 | -8.615850e-47 |
| Msa0315990 | Msa0444010 | 0.809704 | 1.658866e-50 | -8.615850e-47 |
| Msa0322830 | Msa0444010 | 0.849251 | 3.644665e-60 | -8.615850e-47 |
| Msa0322840 | Msa0444010 | 0.806243 | 9.040307e-50 | -8.615850e-47 |
| Msa0322860 | Msa0444010 | 0.823871 | 1.096538e-53 | -8.615850e-47 |
| Msa0326540 | Msa0444010 | 0.800732 | 1.255261e-48 | -8.615850e-47 |
| Msa0337850 | Msa0444010 | 0.821767 | 3.389195e-53 | -8.615850e-47 |
| Msa0351770 | Msa0444010 | 0.820129 | 8.075547e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0444010 | MtrunA17_Chr3g0083761 | 87.225 | 227 | 11 | 2 | 1 | 209 | 238 | 464 | 1.93e-139 | 398 |
| Msa0444010 | MtrunA17_Chr7g0219881 | 58.296 | 223 | 73 | 4 | 1 | 208 | 245 | 462 | 2.68e-80 | 247 |
| Msa0444010 | MtrunA17_Chr2g0323511 | 38.326 | 227 | 116 | 6 | 2 | 209 | 264 | 485 | 5.81e-41 | 145 |
| Msa0444010 | MtrunA17_Chr2g0323471 | 40.741 | 216 | 113 | 6 | 2 | 209 | 272 | 480 | 4.37e-38 | 137 |
| Msa0444010 | MtrunA17_Chr8g0339641 | 39.381 | 226 | 118 | 6 | 2 | 209 | 251 | 475 | 6.74e-37 | 134 |
| Msa0444010 | MtrunA17_Chr2g0323501 | 32.420 | 219 | 133 | 6 | 2 | 207 | 260 | 476 | 2.44e-28 | 110 |
| Msa0444010 | MtrunA17_Chr3g0087901 | 33.032 | 221 | 135 | 5 | 1 | 209 | 248 | 467 | 3.91e-28 | 110 |
| Msa0444010 | MtrunA17_Chr7g0219301 | 35.714 | 210 | 121 | 7 | 3 | 202 | 672 | 877 | 5.28e-28 | 110 |
| Msa0444010 | MtrunA17_Chr7g0219301 | 33.333 | 210 | 126 | 6 | 3 | 202 | 249 | 454 | 7.60e-28 | 110 |
| Msa0444010 | MtrunA17_Chr2g0323481 | 34.703 | 219 | 126 | 7 | 2 | 207 | 248 | 462 | 1.10e-27 | 108 |
| Msa0444010 | MtrunA17_Chr7g0219331 | 32.857 | 210 | 127 | 6 | 3 | 202 | 342 | 547 | 9.25e-27 | 106 |
| Msa0444010 | MtrunA17_Chr2g0323421 | 33.929 | 224 | 127 | 8 | 2 | 209 | 294 | 512 | 1.12e-26 | 106 |
| Msa0444010 | MtrunA17_Chr7g0219241 | 32.512 | 203 | 122 | 4 | 2 | 190 | 256 | 457 | 9.95e-24 | 97.8 |
| Msa0444010 | MtrunA17_Chr7g0219121 | 33.816 | 207 | 117 | 7 | 2 | 191 | 259 | 462 | 1.30e-23 | 97.4 |
| Msa0444010 | MtrunA17_Chr7g0219181 | 30.263 | 228 | 119 | 7 | 2 | 202 | 257 | 471 | 3.82e-23 | 96.3 |
| Msa0444010 | MtrunA17_Chr6g0454761 | 31.754 | 211 | 133 | 6 | 6 | 209 | 739 | 945 | 4.72e-23 | 96.3 |
| Msa0444010 | MtrunA17_Chr6g0454761 | 29.646 | 226 | 125 | 6 | 2 | 209 | 248 | 457 | 4.54e-20 | 87.8 |
| Msa0444010 | MtrunA17_Chr7g0219291 | 31.193 | 218 | 128 | 6 | 2 | 202 | 599 | 811 | 1.58e-21 | 92.0 |
| Msa0444010 | MtrunA17_Chr7g0219291 | 32.020 | 203 | 122 | 6 | 2 | 190 | 112 | 312 | 1.30e-20 | 89.4 |
| Msa0444010 | MtrunA17_Chr6g0455341 | 29.302 | 215 | 139 | 4 | 2 | 209 | 255 | 463 | 1.68e-21 | 91.7 |
| Msa0444010 | MtrunA17_Chr3g0124341 | 31.455 | 213 | 125 | 7 | 12 | 207 | 265 | 473 | 3.63e-21 | 90.5 |
| Msa0444010 | MtrunA17_Chr6g0455361 | 29.630 | 216 | 138 | 6 | 1 | 209 | 252 | 460 | 5.40e-20 | 87.0 |
| Msa0444010 | MtrunA17_Chr7g0219101 | 29.911 | 224 | 135 | 7 | 2 | 208 | 210 | 428 | 2.22e-19 | 85.5 |
| Msa0444010 | MtrunA17_Chr7g0219221 | 36.879 | 141 | 79 | 3 | 59 | 190 | 3 | 142 | 4.43e-18 | 77.8 |
| Msa0444010 | MtrunA17_Chr7g0219311 | 33.562 | 146 | 87 | 6 | 52 | 189 | 2 | 145 | 3.92e-17 | 75.1 |
| Msa0444010 | MtrunA17_Chr7g0219341 | 31.973 | 147 | 91 | 5 | 64 | 202 | 1 | 146 | 2.24e-16 | 73.2 |
| Msa0444010 | MtrunA17_Chr7g0219201 | 30.159 | 189 | 122 | 3 | 20 | 199 | 8 | 195 | 3.41e-15 | 71.2 |
| Msa0444010 | MtrunA17_Chr2g0323491 | 37.333 | 75 | 47 | 0 | 135 | 209 | 6 | 80 | 3.55e-13 | 62.8 |
| Msa0444010 | MtrunA17_Chr3g0092001 | 33.065 | 124 | 73 | 4 | 92 | 209 | 1 | 120 | 4.49e-13 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0444010 | AT1G03940.1 | 29.386 | 228 | 131 | 6 | 1 | 207 | 247 | 465 | 9.35e-28 | 109 |
| Msa0444010 | AT3G29635.1 | 31.731 | 208 | 127 | 7 | 1 | 198 | 244 | 446 | 2.52e-22 | 94.4 |
| Msa0444010 | AT3G29670.1 | 28.502 | 207 | 125 | 8 | 1 | 195 | 243 | 438 | 5.93e-21 | 90.1 |
| Msa0444010 | AT5G39090.1 | 28.837 | 215 | 141 | 6 | 1 | 207 | 238 | 448 | 1.02e-18 | 84.0 |
| Msa0444010 | AT3G29680.1 | 30.435 | 207 | 129 | 9 | 1 | 198 | 239 | 439 | 4.85e-18 | 82.0 |
| Msa0444010 | AT3G29590.1 | 28.571 | 217 | 139 | 5 | 1 | 206 | 237 | 448 | 2.28e-17 | 80.1 |
| Msa0444010 | AT5G61160.1 | 29.143 | 175 | 114 | 6 | 32 | 198 | 270 | 442 | 5.17e-17 | 79.0 |
| Msa0444010 | AT5G39050.1 | 25.248 | 202 | 142 | 5 | 14 | 208 | 270 | 469 | 1.41e-16 | 77.8 |
| Msa0444010 | AT5G39080.1 | 25.463 | 216 | 149 | 7 | 1 | 206 | 248 | 461 | 5.93e-16 | 75.9 |
Find 30 sgRNAs with CRISPR-Local
Find 45 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGATTTCAACAAATTATTT+TGG | 0.164463 | 3_3:-16577243 | Msa0444010:CDS |
| TTCTATTGGAATAGAAATTA+AGG | 0.170988 | 3_3:-16577142 | Msa0444010:CDS |
| TTGTTGCATGTTCTTTGTTT+TGG | 0.232091 | 3_3:-16577389 | Msa0444010:CDS |
| TTTGAAGATAATTACGGTTT+TGG | 0.233969 | 3_3:-16577294 | Msa0444010:intron |
| GTTTGATTGATCCACTAAAA+AGG | 0.238232 | 3_3:-16577119 | Msa0444010:CDS |
| TGTGAAGCAGTTAATTCTAT+TGG | 0.291099 | 3_3:-16577156 | Msa0444010:CDS |
| TATCTCTAAGTTGAGCTTCT+AGG | 0.296611 | 3_3:+16576844 | None:intergenic |
| ACTTCCAAAGAGGAAGTTAT+TGG | 0.300492 | 3_3:-16577193 | Msa0444010:CDS |
| TCTCCCAATAACTTCCTCTT+TGG | 0.322116 | 3_3:+16577189 | None:intergenic |
| TGAAGAATTTCACTCAAAAC+TGG | 0.343769 | 3_3:+16576975 | None:intergenic |
| AATGTGTATGAAACTAATTT+TGG | 0.344845 | 3_3:-16577008 | Msa0444010:CDS |
| TCTATTGGAATAGAAATTAA+GGG | 0.350626 | 3_3:-16577141 | Msa0444010:CDS |
| TGAAGTTGGGATGGTGTTAG+AGG | 0.372013 | 3_3:-16576895 | Msa0444010:CDS |
| AATTTGTTGAAATCTCAAAA+TGG | 0.424170 | 3_3:+16577250 | None:intergenic |
| GAAGATCATGGCATTGAAGT+TGG | 0.433604 | 3_3:-16576909 | Msa0444010:CDS |
| CTTCCAAAGAGGAAGTTATT+GGG | 0.437547 | 3_3:-16577192 | Msa0444010:CDS |
| TTTACAACGTGCTAGGGACT+TGG | 0.441330 | 3_3:-16577078 | Msa0444010:intron |
| AGGAAGTTATTGGGAGAGAA+TGG | 0.458911 | 3_3:-16577183 | Msa0444010:CDS |
| GTTTCATACACATTAAACTT+TGG | 0.462228 | 3_3:+16577017 | None:intergenic |
| TTACAACGTGCTAGGGACTT+GGG | 0.476923 | 3_3:-16577077 | Msa0444010:intron |
| AAGATCATGGCATTGAAGTT+GGG | 0.519789 | 3_3:-16576908 | Msa0444010:CDS |
| GATGGTGTTAGAGGCAGCTC+AGG | 0.527956 | 3_3:-16576886 | Msa0444010:CDS |
| TTGTTTAGGCTCTTGTGTTG+CGG | 0.539510 | 3_3:-16577217 | Msa0444010:CDS |
| TTTGAGTGAAATTCTTCATG+TGG | 0.546331 | 3_3:-16576970 | Msa0444010:CDS |
| AGTTCTAAAGATGAAGATCA+TGG | 0.559685 | 3_3:-16576921 | Msa0444010:CDS |
| TATATTAACACATCATCAAG+CGG | 0.578546 | 3_3:-16577484 | Msa0444010:CDS |
| TACAACGTGCTAGGGACTTG+GGG | 0.583528 | 3_3:-16577076 | Msa0444010:intron |
| CAAAGAACATGCAACAACAA+AGG | 0.618163 | 3_3:+16577395 | None:intergenic |
| GTGTTGCGGCACTTCCAAAG+AGG | 0.623285 | 3_3:-16577203 | Msa0444010:CDS |
| TCATGGCATTGAAGTTGGGA+TGG | 0.653838 | 3_3:-16576904 | Msa0444010:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATGATTTTGAAGATAATTA+CGG | - | chr3_3:16577043-16577062 | Msa0444010:CDS | 15.0% |
| !!! | AATTATTTTGGAAATTGTTT+AGG | - | chr3_3:16577112-16577131 | Msa0444010:CDS | 15.0% |
| !! | GTTACAAAAAGTAAAACTAT+TGG | - | chr3_3:16576902-16576921 | Msa0444010:CDS | 20.0% |
| !!! | AATTTGTTGAAATCTCAAAA+TGG | + | chr3_3:16577096-16577115 | None:intergenic | 20.0% |
| !!! | GAGATTTCAACAAATTATTT+TGG | - | chr3_3:16577100-16577119 | Msa0444010:intron | 20.0% |
| !! | TTCTATTGGAATAGAAATTA+AGG | - | chr3_3:16577201-16577220 | Msa0444010:CDS | 20.0% |
| !! | TCTATTGGAATAGAAATTAA+GGG | - | chr3_3:16577202-16577221 | Msa0444010:CDS | 20.0% |
| !!! | AATGTGTATGAAACTAATTT+TGG | - | chr3_3:16577335-16577354 | Msa0444010:intron | 20.0% |
| ! | TATATTAACACATCATCAAG+CGG | - | chr3_3:16576859-16576878 | Msa0444010:CDS | 25.0% |
| ! | AAGCGGAAAAATTGAAAAAA+TGG | - | chr3_3:16576876-16576895 | Msa0444010:CDS | 25.0% |
| !! | TTTGAAGATAATTACGGTTT+TGG | - | chr3_3:16577049-16577068 | Msa0444010:CDS | 25.0% |
| !!! | TTACGGTTTTGGATTTTTAA+TGG | - | chr3_3:16577060-16577079 | Msa0444010:CDS | 25.0% |
| ! | TTTGATTGATCCACTAAAAA+GGG | - | chr3_3:16577225-16577244 | Msa0444010:CDS | 25.0% |
| ! | GTTTCATACACATTAAACTT+TGG | + | chr3_3:16577329-16577348 | None:intergenic | 25.0% |
| !! | TGTATGAAACTAATTTTGGA+TGG | - | chr3_3:16577339-16577358 | Msa0444010:intron | 25.0% |
| !! | GTATGAAACTAATTTTGGAT+GGG | - | chr3_3:16577340-16577359 | Msa0444010:intron | 25.0% |
| !! | TATGAAACTAATTTTGGATG+GGG | - | chr3_3:16577341-16577360 | Msa0444010:intron | 25.0% |
| !! | TTGTTGCATGTTCTTTGTTT+TGG | - | chr3_3:16576954-16576973 | Msa0444010:CDS | 30.0% |
| !!! | TGTTGCATGTTCTTTGTTTT+GGG | - | chr3_3:16576955-16576974 | Msa0444010:CDS | 30.0% |
| !!! | TTCTTTGTTTTGGGTATGTA+AGG | - | chr3_3:16576964-16576983 | Msa0444010:CDS | 30.0% |
| TGTGAAGCAGTTAATTCTAT+TGG | - | chr3_3:16577187-16577206 | Msa0444010:CDS | 30.0% | |
| GTTTGATTGATCCACTAAAA+AGG | - | chr3_3:16577224-16577243 | Msa0444010:CDS | 30.0% | |
| !!! | TATGTTTTTTACAACGTGCT+AGG | - | chr3_3:16577258-16577277 | Msa0444010:CDS | 30.0% |
| !!! | ATGTTTTTTACAACGTGCTA+GGG | - | chr3_3:16577259-16577278 | Msa0444010:CDS | 30.0% |
| ! | ATGAAACTAATTTTGGATGG+GGG | - | chr3_3:16577342-16577361 | Msa0444010:intron | 30.0% |
| TGAAGAATTTCACTCAAAAC+TGG | + | chr3_3:16577371-16577390 | None:intergenic | 30.0% | |
| TTTGAGTGAAATTCTTCATG+TGG | - | chr3_3:16577373-16577392 | Msa0444010:CDS | 30.0% | |
| !! | AGTTCTAAAGATGAAGATCA+TGG | - | chr3_3:16577422-16577441 | Msa0444010:CDS | 30.0% |
| CAAAGAACATGCAACAACAA+AGG | + | chr3_3:16576951-16576970 | None:intergenic | 35.0% | |
| ACTTCCAAAGAGGAAGTTAT+TGG | - | chr3_3:16577150-16577169 | Msa0444010:CDS | 35.0% | |
| CTTCCAAAGAGGAAGTTATT+GGG | - | chr3_3:16577151-16577170 | Msa0444010:CDS | 35.0% | |
| ! | AGATCTTCAACCCTTTTTAG+TGG | + | chr3_3:16577238-16577257 | None:intergenic | 35.0% |
| ! | AAGATCATGGCATTGAAGTT+GGG | - | chr3_3:16577435-16577454 | Msa0444010:CDS | 35.0% |
| ! | TATCTCTAAGTTGAGCTTCT+AGG | + | chr3_3:16577502-16577521 | None:intergenic | 35.0% |
| TTGTTTAGGCTCTTGTGTTG+CGG | - | chr3_3:16577126-16577145 | Msa0444010:CDS | 40.0% | |
| TCTCCCAATAACTTCCTCTT+TGG | + | chr3_3:16577157-16577176 | None:intergenic | 40.0% | |
| AGGAAGTTATTGGGAGAGAA+TGG | - | chr3_3:16577160-16577179 | Msa0444010:CDS | 40.0% | |
| ! | GAAGATCATGGCATTGAAGT+TGG | - | chr3_3:16577434-16577453 | Msa0444010:CDS | 40.0% |
| TTTACAACGTGCTAGGGACT+TGG | - | chr3_3:16577265-16577284 | Msa0444010:CDS | 45.0% | |
| TTACAACGTGCTAGGGACTT+GGG | - | chr3_3:16577266-16577285 | Msa0444010:CDS | 45.0% | |
| ! | TCATGGCATTGAAGTTGGGA+TGG | - | chr3_3:16577439-16577458 | Msa0444010:CDS | 45.0% |
| ! | TGAAGTTGGGATGGTGTTAG+AGG | - | chr3_3:16577448-16577467 | Msa0444010:CDS | 45.0% |
| TACAACGTGCTAGGGACTTG+GGG | - | chr3_3:16577267-16577286 | Msa0444010:CDS | 50.0% | |
| GTGTTGCGGCACTTCCAAAG+AGG | - | chr3_3:16577140-16577159 | Msa0444010:CDS | 55.0% | |
| ! | GATGGTGTTAGAGGCAGCTC+AGG | - | chr3_3:16577457-16577476 | Msa0444010:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 16576842 | 16577523 | 16576842 | ID=Msa0444010;Name=Msa0444010 |
| chr3_3 | mRNA | 16576842 | 16577523 | 16576842 | ID=Msa0444010-mRNA-1;Parent=Msa0444010;Name=Msa0444010-mRNA-1;_AED=0.27;_eAED=0.27;_QI=0|0|0|1|0|0|3|0|209 |
| chr3_3 | exon | 16577346 | 16577523 | 16577346 | ID=Msa0444010-mRNA-1:exon:3465;Parent=Msa0444010-mRNA-1 |
| chr3_3 | exon | 16577105 | 16577309 | 16577105 | ID=Msa0444010-mRNA-1:exon:3464;Parent=Msa0444010-mRNA-1 |
| chr3_3 | exon | 16576842 | 16577085 | 16576842 | ID=Msa0444010-mRNA-1:exon:3463;Parent=Msa0444010-mRNA-1 |
| chr3_3 | CDS | 16577346 | 16577523 | 16577346 | ID=Msa0444010-mRNA-1:cds;Parent=Msa0444010-mRNA-1 |
| chr3_3 | CDS | 16577105 | 16577309 | 16577105 | ID=Msa0444010-mRNA-1:cds;Parent=Msa0444010-mRNA-1 |
| chr3_3 | CDS | 16576842 | 16577085 | 16576842 | ID=Msa0444010-mRNA-1:cds;Parent=Msa0444010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
