AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0776560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0776560 MtrunA17_Chr3g0143691 100.000 108 0 0 1 108 1 108 7.87e-74 214
Msa0776560 MtrunA17_Chr8g0373451 43.519 108 55 3 1 108 1 102 1.26e-20 79.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0776560 AT1G20460.1 80.556 108 19 1 1 108 1 106 1.07e-52 160
Msa0776560 AT1G76185.1 77.778 108 22 1 1 108 1 106 6.05e-42 134

Find 90 sgRNAs with CRISPR-Local

Find 475 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTAACCACATTCGTTTCT+AGG 0.163156 5_2:+54795498 Msa0776560:five_prime_UTR
AATGCCAATATTTGACAATT+TGG 0.189532 5_2:-54802252 Msa0776570:CDS
CTTATGATTCATCAATGATA+TGG 0.219940 5_2:+54801671 Msa0776560:three_prime_UTR
ACTTGTTATATTAGCTTTCT+TGG 0.251758 5_2:+54800983 Msa0776560:CDS
TGATTATAACAGGAGCAATT+TGG 0.259052 5_2:-54801962 Msa0776570:CDS
AATTCCAAATTGTCAAATAT+TGG 0.263642 5_2:+54802248 Msa0776560:three_prime_UTR
GATTATAACAGGAGCAATTT+GGG 0.286205 5_2:-54801961 Msa0776570:CDS
CTTGGAAGTGTTGGTGATAT+TGG 0.288093 5_2:-54795714 None:intergenic
CAGGGATAAGCTAATGTTAT+TGG 0.303074 5_2:+54802080 Msa0776560:three_prime_UTR
ATGTGGTGGTCTTTGTAATA+TGG 0.308754 5_2:+54800958 Msa0776560:CDS
CCAAGTTTGGCAGGCCTCAT+TGG 0.309414 5_2:-54802116 Msa0776570:CDS
ACAAGGTCTGTTCCATTTGC+TGG 0.320898 5_2:+54802217 Msa0776560:three_prime_UTR
ATATTGGCATTGCATAGATT+TGG 0.333932 5_2:+54802264 Msa0776560:three_prime_UTR
CAACTATCAAAGTTTGATCT+TGG 0.344411 5_2:+54801169 Msa0776560:three_prime_UTR
GTTACCATTCTTGCCAAGTT+TGG 0.346473 5_2:-54802129 Msa0776570:CDS
TAAAATCAAAACGACGACTA+TGG 0.346667 5_2:-54795534 None:intergenic
TAATCTGAATCTTACTACTA+TGG 0.355474 5_2:+54801900 Msa0776560:three_prime_UTR
CGTTATCATGGTATTGCTCC+TGG 0.359499 5_2:-54795603 None:intergenic
AATCAGTATCCACATGAAAC+AGG 0.375042 5_2:+54802061 Msa0776560:three_prime_UTR
GCACAACTTGGTATCTAAAC+TGG 0.375967 5_2:-54802019 Msa0776570:CDS
TTCACATATAAGTTCGTAAA+GGG 0.388893 5_2:-54801501 None:intergenic
GACAGAGGCCCAGTCATGTT+TGG 0.389709 5_2:-54795669 None:intergenic
CCAATGAGGCCTGCCAAACT+TGG 0.398074 5_2:+54802116 Msa0776560:three_prime_UTR
TCCAACCGGATAAGCTTGTT+TGG 0.405272 5_2:-54801352 None:intergenic
CTAAGTGTACTGATTATAAC+AGG 0.406004 5_2:-54801972 Msa0776570:CDS
AACTATCAAAGTTTGATCTT+GGG 0.408392 5_2:+54801170 Msa0776560:three_prime_UTR
CCATTCTTGCCAAGTTTGGC+AGG 0.412295 5_2:-54802125 Msa0776570:CDS
TACATCCAAACAAGCTTATC+CGG 0.412396 5_2:+54801347 Msa0776560:three_prime_UTR
TAACGCTACAGAAATGAAAA+AGG 0.435226 5_2:+54802148 Msa0776560:three_prime_UTR
GGAAGAAGTAGAAGAGAAGA+AGG 0.442136 5_2:-54795693 None:intergenic
CCTGCCAAACTTGGCAAGAA+TGG 0.448920 5_2:+54802125 Msa0776560:three_prime_UTR
AACTGGACGCTAGGAGCAGT+TGG 0.454856 5_2:-54802002 Msa0776570:CDS
TGGTGTAACTTAGTTGTGCC+AGG 0.460930 5_2:+54801377 Msa0776560:three_prime_UTR
AAGATTCGATCGCGTTATCA+TGG 0.461012 5_2:-54795615 None:intergenic
TTGATTTGCCAGCATTTGCT+AGG 0.463022 5_2:-54801790 None:intergenic
AATTTGGGGCATTGTAGCAC+TGG 0.471998 5_2:-54801946 Msa0776570:CDS
TTCAATGACGAATGAGAAGC+TGG 0.477316 5_2:-54801265 None:intergenic
TTATGATTCATCAATGATAT+GGG 0.486486 5_2:+54801672 Msa0776560:three_prime_UTR
CTTCCATTGTCAATGTAAAG+TGG 0.495198 5_2:+54801143 Msa0776560:exon
AATTCAGATACACCAGCAAA+TGG 0.496255 5_2:-54802229 Msa0776570:CDS
GTTGTGTTGCAGGGTGGATG+TGG 0.497670 5_2:+54800941 Msa0776560:intron
TGTGGTGGTCTTTGTAATAT+GGG 0.499279 5_2:+54800959 Msa0776560:CDS
GTTATCATGGTATTGCTCCT+GGG 0.514041 5_2:-54795602 None:intergenic
TCTTTACACAAGAGTTCGCC+TGG 0.515467 5_2:-54801537 None:intergenic
ACTGGACGCTAGGAGCAGTT+GGG 0.517354 5_2:-54802001 Msa0776570:CDS
TAAGTTACACCACCTCCAAC+CGG 0.519203 5_2:-54801366 None:intergenic
ATAGCCTTCAGAAGTCTCTT+CGG 0.519501 5_2:-54802179 Msa0776570:CDS
AATTACAAAGCAAGTAAGAC+TGG 0.525332 5_2:+54801094 Msa0776560:CDS
AGATTCGATCCAAACATGAC+TGG 0.525414 5_2:+54795660 Msa0776560:CDS
AATACAACAAAGTTAATATG+TGG 0.532838 5_2:-54801624 None:intergenic
TAGCTGTGATATTATGCAGA+AGG 0.533940 5_2:+54801581 Msa0776560:three_prime_UTR
TTTCACATATAAGTTCGTAA+AGG 0.541820 5_2:-54801502 None:intergenic
AGTTTGGCAGGCCTCATTGG+AGG 0.545784 5_2:-54802113 Msa0776570:CDS
CAAGCTTATCCGGTTGGAGG+TGG 0.549742 5_2:+54801357 Msa0776560:three_prime_UTR
ACTACTATGGATTGAAGAAG+TGG 0.554728 5_2:+54801913 Msa0776560:three_prime_UTR
TGTAAAACCCTAGCAAATGC+TGG 0.556081 5_2:+54801782 Msa0776560:three_prime_UTR
TAGCTTATCCCTGTTTCATG+TGG 0.559338 5_2:-54802070 Msa0776570:CDS
TGATTTGCCAGCATTTGCTA+GGG 0.562661 5_2:-54801789 None:intergenic
TCCAAACAAGCTTATCCGGT+TGG 0.566894 5_2:+54801351 Msa0776560:three_prime_UTR
ATTGGCATACTTGGAAGTGT+TGG 0.574281 5_2:-54795723 None:intergenic
AAACAAGCTTATCCGGTTGG+AGG 0.575266 5_2:+54801354 Msa0776560:three_prime_UTR
AAGTTGACTAGAGAATATAA+AGG 0.582501 5_2:+54801317 Msa0776560:three_prime_UTR
CTTATAGAGAGAGAGGACCC+AGG 0.586727 5_2:+54795585 Msa0776560:five_prime_UTR
AAATTAAACAATAGTTGTGG+TGG 0.589861 5_2:+54801695 Msa0776560:three_prime_UTR
GTTCGTGCTTATAGAGAGAG+AGG 0.591700 5_2:+54795578 Msa0776560:five_prime_UTR
AGATATATGTGACAAGAACC+TGG 0.592487 5_2:-54801395 None:intergenic
ATACCACTTTACATTGACAA+TGG 0.594407 5_2:-54801146 None:intergenic
AGACTAATATAAAAGCAAGC+TGG 0.596382 5_2:-54801040 None:intergenic
TCAATGTAAATGCTCATGAA+TGG 0.597739 5_2:-54801241 None:intergenic
ATTTGGGGCATTGTAGCACT+GGG 0.597853 5_2:-54801945 Msa0776570:CDS
ATTCGAAGCCACCTTGGACA+AGG 0.601009 5_2:+54802200 Msa0776560:three_prime_UTR
TGGTATCTAAACTGGACGCT+AGG 0.603358 5_2:-54802011 Msa0776570:CDS
AAGGCTATTCGAAGCCACCT+TGG 0.605278 5_2:+54802194 Msa0776560:three_prime_UTR
GGGAAATTAAACAATAGTTG+TGG 0.607700 5_2:+54801692 Msa0776560:three_prime_UTR
GTGTTGCAGGGTGGATGTGG+TGG 0.608417 5_2:+54800944 Msa0776560:intron
AGAAGAGAAGAAGGAGACAG+AGG 0.608463 5_2:-54795684 None:intergenic
TTCAAACCTAGAAACGAATG+TGG 0.608755 5_2:-54795504 None:intergenic
GATTCGATCCAAACATGACT+GGG 0.609935 5_2:+54795661 Msa0776560:CDS
TTCTCTAGTCAACTTGCGAT+AGG 0.610918 5_2:-54801309 None:intergenic
ATCAGTATCCACATGAAACA+GGG 0.613528 5_2:+54802062 Msa0776560:three_prime_UTR
CAAAGCAAGTAAGACTGGCA+AGG 0.617265 5_2:+54801099 Msa0776560:CDS
GTGAAAGTTCGAATACTACC+AGG 0.632377 5_2:+54801519 Msa0776560:three_prime_UTR
ATTATAACAGGAGCAATTTG+GGG 0.641883 5_2:-54801960 Msa0776570:CDS
TGCTGGCAAATCAATGTCTG+CGG 0.644552 5_2:+54801799 Msa0776560:three_prime_UTR
AATGGAACAGACCTTGTCCA+AGG 0.646427 5_2:-54802211 Msa0776570:CDS
AAAATATAACTTACACTACA+GGG 0.656372 5_2:+54801854 Msa0776560:three_prime_UTR
TGGCAAGGAAGAAGAAACGA+AGG 0.664230 5_2:+54801114 Msa0776560:CDS
GCAGCCGAAGAGACTTCTGA+AGG 0.664301 5_2:+54802175 Msa0776560:three_prime_UTR
GTAGAGCAACTCCTCCAATG+AGG 0.679984 5_2:+54802102 Msa0776560:three_prime_UTR
GGAACAGACCTTGTCCAAGG+TGG 0.695952 5_2:-54802208 Msa0776570:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATTATATTATTAATTA+AGG - chr5_2:54797564-54797583 None:intergenic 0.0%
!!! ATCAATTGATAATTTTTTTT+TGG + chr5_2:54796416-54796435 Msa0776560:intron 10.0%
!! TCTATTTAAATAACAAATAA+GGG + chr5_2:54800594-54800613 Msa0776560:intron 10.0%
!! ATTTCATAGAATAAATTTGT+AGG + chr5_2:54796033-54796052 Msa0776560:intron 15.0%
!!! TCACTAAATATTTTTGTTTA+AGG + chr5_2:54796279-54796298 Msa0776560:intron 15.0%
!!! TAAATATTTTTGTTTAAGGA+GGG + chr5_2:54796283-54796302 Msa0776560:intron 15.0%
!!! TTTGTTAGTATTGTTTTATT+AGG + chr5_2:54796372-54796391 Msa0776560:intron 15.0%
!! TAGAATAATAAAGAATAATG+TGG - chr5_2:54796994-54797013 None:intergenic 15.0%
!! AGAATTATAAAGAAAATGTA+TGG - chr5_2:54798001-54798020 None:intergenic 15.0%
!!! AAATTGTTTTTGAGTAAAAT+TGG + chr5_2:54798709-54798728 Msa0776560:intron 15.0%
!! GTCTATTTAAATAACAAATA+AGG + chr5_2:54800593-54800612 Msa0776560:intron 15.0%
!!! TTGGATTGATTATTATTTTA+TGG + chr5_2:54800778-54800797 Msa0776560:intron 15.0%
!! AAAATGAATAGAGTTTGAAT+TGG - chr5_2:54795744-54795763 None:intergenic 20.0%
!! CAAGAGAAATATTCATAATT+GGG - chr5_2:54795778-54795797 None:intergenic 20.0%
!! ACAAGAGAAATATTCATAAT+TGG - chr5_2:54795779-54795798 None:intergenic 20.0%
!! AACAAGAGAAATATATACAT+GGG - chr5_2:54795826-54795845 None:intergenic 20.0%
!! AAACAAGAGAAATATATACA+TGG - chr5_2:54795827-54795846 None:intergenic 20.0%
!! GCTTCAATTATAAGATTAAT+TGG + chr5_2:54796170-54796189 Msa0776560:intron 20.0%
!! AAAAATATTTAGTGATACCA+AGG - chr5_2:54796274-54796293 None:intergenic 20.0%
!!! CTAAATATTTTTGTTTAAGG+AGG + chr5_2:54796282-54796301 Msa0776560:intron 20.0%
!!! AAATATTTTTGTTTAAGGAG+GGG + chr5_2:54796284-54796303 Msa0776560:intron 20.0%
!! TAAATCATAATGCAAATAGA+GGG - chr5_2:54796636-54796655 None:intergenic 20.0%
!! ATAAATCATAATGCAAATAG+AGG - chr5_2:54796637-54796656 None:intergenic 20.0%
!!! TCATTTTGACTGTAAAAAAA+AGG - chr5_2:54797396-54797415 None:intergenic 20.0%
!! AAATGTTGTATCAAACTATA+TGG - chr5_2:54798141-54798160 None:intergenic 20.0%
!! TAATATCATTCATATGAAGT+TGG + chr5_2:54799000-54799019 Msa0776560:intron 20.0%
!!! TTGTCGATGATTTTTTTTTT+GGG + chr5_2:54799219-54799238 Msa0776560:intron 20.0%
!! CAGAATAATAAAGAATAATG+TGG - chr5_2:54799865-54799884 None:intergenic 20.0%
!! CACATTATTCTTTATTATTC+TGG + chr5_2:54796992-54797011 Msa0776560:intron 20.0%
!! CAAAATTATATCAACGTTAA+GGG - chr5_2:54800197-54800216 None:intergenic 20.0%
!! TCAAAATTATATCAACGTTA+AGG - chr5_2:54800198-54800217 None:intergenic 20.0%
!! CAAATAAAGGACATAATTAT+CGG + chr5_2:54800420-54800439 Msa0776560:intron 20.0%
!! ATTTAAATAACAAATAAGGG+AGG + chr5_2:54800597-54800616 Msa0776560:intron 20.0%
!! TGTAATTTACTTCTTGATAA+TGG + chr5_2:54800685-54800704 Msa0776560:intron 20.0%
!!! AAGTTTTTATAAGAAACTCA+AGG - chr5_2:54800833-54800852 None:intergenic 20.0%
!!! ATCTTTTTATTAATGCTCTT+TGG + chr5_2:54800875-54800894 Msa0776560:intron 20.0%
!!! TCTTTTTATTAATGCTCTTT+GGG + chr5_2:54800876-54800895 Msa0776560:intron 20.0%
!! AATACAACAAAGTTAATATG+TGG - chr5_2:54801627-54801646 None:intergenic 20.0%
!! TTATGATTCATCAATGATAT+GGG + chr5_2:54801672-54801691 Msa0776560:three_prime_UTR 20.0%
!! AAAAATATAACTTACACTAC+AGG + chr5_2:54801853-54801872 Msa0776560:three_prime_UTR 20.0%
!! AAAATATAACTTACACTACA+GGG + chr5_2:54801854-54801873 Msa0776560:three_prime_UTR 20.0%
!! AATTCCAAATTGTCAAATAT+TGG + chr5_2:54802248-54802267 Msa0776560:three_prime_UTR 20.0%
! TCAGATAGGTTAATGAAAAA+TGG - chr5_2:54795896-54795915 None:intergenic 25.0%
! CATCATAAGAATTATTTCAG+AGG - chr5_2:54795978-54795997 None:intergenic 25.0%
!!! CTCTGAAATAATTCTTATGA+TGG + chr5_2:54795976-54795995 Msa0776560:intron 25.0%
! ATGACTAACATTCTAACAAA+AGG - chr5_2:54796130-54796149 None:intergenic 25.0%
! TAGAATGTTAGTCATAATCT+TGG + chr5_2:54796135-54796154 Msa0776560:intron 25.0%
! ATAATCTTGGATGTGAAAAT+TGG + chr5_2:54796148-54796167 Msa0776560:intron 25.0%
!!! AGTCTGAGATATTTTTATAG+AGG - chr5_2:54796310-54796329 None:intergenic 25.0%
! AATTGAATAGAAAAGAGTCA+CGG - chr5_2:54796339-54796358 None:intergenic 25.0%
! ATGATTATAAGATGATTCAG+AGG - chr5_2:54796398-54796417 None:intergenic 25.0%
!!! TTTTTTTGGTTGAACTCATA+TGG + chr5_2:54796430-54796449 Msa0776560:intron 25.0%
!!! TTTTTTGGTTGAACTCATAT+GGG + chr5_2:54796431-54796450 Msa0776560:intron 25.0%
! TTGTCAATTGAGTTATTTGT+CGG + chr5_2:54796536-54796555 Msa0776560:intron 25.0%
!! ACAACTTTCTTTGAGAATAT+TGG - chr5_2:54796709-54796728 None:intergenic 25.0%
! TTCCTAGAGTAGTATAAATA+AGG - chr5_2:54796782-54796801 None:intergenic 25.0%
!! TTATTTATACTACTCTAGGA+AGG + chr5_2:54796781-54796800 Msa0776560:intron 25.0%
!!! TAGATATTTCGAGTTTGTAA+TGG - chr5_2:54796811-54796830 None:intergenic 25.0%
! TAGAAACAAAGAAAAGTCTA+TGG + chr5_2:54796829-54796848 Msa0776560:intron 25.0%
! ACATTACTAAATAAGCACTA+GGG - chr5_2:54796901-54796920 None:intergenic 25.0%
! AGTATAATATAGAAGTCTCT+AGG - chr5_2:54796953-54796972 None:intergenic 25.0%
! GAGACTTCTATATTATACTT+TGG + chr5_2:54796954-54796973 Msa0776560:intron 25.0%
! GAGAATGATGAAGAATAATA+TGG - chr5_2:54797024-54797043 None:intergenic 25.0%
!!! AACTTTGTTTTATCCTTGAA+TGG + chr5_2:54797758-54797777 Msa0776560:intron 25.0%
!! CCAATATATGATGATGAATA+CGG - chr5_2:54798335-54798354 None:intergenic 25.0%
! ATTTACGATGAAGAATATGT+TGG - chr5_2:54798401-54798420 None:intergenic 25.0%
! ACATATTCTTCATCGTAAAT+TGG + chr5_2:54798401-54798420 Msa0776560:intron 25.0%
! GAAATTCATGAATCATTTGA+AGG - chr5_2:54798443-54798462 None:intergenic 25.0%
!!! AAATTGGCTTGATAATAATG+AGG + chr5_2:54798725-54798744 Msa0776560:intron 25.0%
!!! TCTTTACTTTTTTTCCCTTA+TGG + chr5_2:54798882-54798901 Msa0776560:intron 25.0%
! TGAACATGTATTTGAGTATA+AGG - chr5_2:54798913-54798932 None:intergenic 25.0%
!!! GTTGTCGATGATTTTTTTTT+TGG + chr5_2:54799218-54799237 Msa0776560:intron 25.0%
! TTCCTAGAGTAGTATAAATA+AGG - chr5_2:54796782-54796801 None:intergenic 25.0%
!! TTATTTATACTACTCTAGGA+AGG + chr5_2:54796781-54796800 Msa0776560:intron 25.0%
!!! TAGATATTTCGAGTTTGTAA+TGG - chr5_2:54796811-54796830 None:intergenic 25.0%
! TAGAAACAAAGAAAAGTCTA+TGG + chr5_2:54796829-54796848 Msa0776560:intron 25.0%
! ACATTACTAAATAAGCACTA+GGG - chr5_2:54796901-54796920 None:intergenic 25.0%
! TAGAATACTAGGGAATAATA+AGG - chr5_2:54799805-54799824 None:intergenic 25.0%
! GAGACTTCTATATTATACTT+TGG + chr5_2:54796954-54796973 Msa0776560:intron 25.0%
! GAGAATGATGAAGAATAATA+TGG - chr5_2:54797024-54797043 None:intergenic 25.0%
!! AAACTGATAATGAATTGGTT+TGG - chr5_2:54799974-54799993 None:intergenic 25.0%
!! GAATCAAACTGATAATGAAT+TGG - chr5_2:54799979-54799998 None:intergenic 25.0%
! AGTGTAGTTATTTATGGAAA+AGG - chr5_2:54800001-54800020 None:intergenic 25.0%
! GATTTGAGTGTAGTTATTTA+TGG - chr5_2:54800007-54800026 None:intergenic 25.0%
! AATTATGTGAAAAGATTCCA+GGG - chr5_2:54800029-54800048 None:intergenic 25.0%
!! TTTTCACATAATTCCCTATA+TGG + chr5_2:54800036-54800055 Msa0776560:intron 25.0%
! ATGAGTTTCAATAAGCTAAT+CGG + chr5_2:54800105-54800124 Msa0776560:intron 25.0%
! CTACAAAAAACAATCTTTGT+TGG + chr5_2:54800131-54800150 Msa0776560:intron 25.0%
! CGATAATTATGTCCTTTATT+TGG - chr5_2:54800422-54800441 None:intergenic 25.0%
!! TTGATTAAGTGATAATTTGC+TGG - chr5_2:54800446-54800465 None:intergenic 25.0%
! AGTGTTTAGTTAAAAACTAG+AGG + chr5_2:54800622-54800641 Msa0776560:intron 25.0%
! GTGTTTAGTTAAAAACTAGA+GGG + chr5_2:54800623-54800642 Msa0776560:intron 25.0%
! TGTTTAGTTAAAAACTAGAG+GGG + chr5_2:54800624-54800643 Msa0776560:intron 25.0%
!! TTTTATGGTGTAGTTGTTTA+CGG + chr5_2:54800793-54800812 Msa0776560:intron 25.0%
! GAGTTTCTTATAAAAACTTG+TGG + chr5_2:54800834-54800853 Msa0776560:intron 25.0%
!!! ACTTGTTATATTAGCTTTCT+TGG + chr5_2:54800983-54801002 Msa0776560:CDS 25.0%
! AACTATCAAAGTTTGATCTT+GGG + chr5_2:54801170-54801189 Msa0776560:three_prime_UTR 25.0%
! AAGTTGACTAGAGAATATAA+AGG + chr5_2:54801317-54801336 Msa0776560:three_prime_UTR 25.0%
! TTCACATATAAGTTCGTAAA+GGG - chr5_2:54801504-54801523 None:intergenic 25.0%
! TTTCACATATAAGTTCGTAA+AGG - chr5_2:54801505-54801524 None:intergenic 25.0%
! CTTATGATTCATCAATGATA+TGG + chr5_2:54801671-54801690 Msa0776560:three_prime_UTR 25.0%
! AAATTAAACAATAGTTGTGG+TGG + chr5_2:54801695-54801714 Msa0776560:three_prime_UTR 25.0%
!!! TTTTTGTTGTTGTTACAAGA+TGG + chr5_2:54801828-54801847 Msa0776560:three_prime_UTR 25.0%
! TAATCTGAATCTTACTACTA+TGG + chr5_2:54801900-54801919 Msa0776560:three_prime_UTR 25.0%
! AATGCCAATATTTGACAATT+TGG - chr5_2:54802255-54802274 Msa0776570:CDS 25.0%
TAAAATCAAAACGACGACTA+TGG - chr5_2:54795537-54795556 None:intergenic 30.0%
!!! ACATGGGTTAGATTTTGATT+TGG - chr5_2:54795810-54795829 None:intergenic 30.0%
!!! ACATGGGTTAGATTTTGATT+TGG - chr5_2:54795810-54795829 None:intergenic 30.0%
GTCAAATTTGTGATTCAGAT+AGG - chr5_2:54795910-54795929 None:intergenic 30.0%
TCTGAATCACAAATTTGACA+TGG + chr5_2:54795911-54795930 Msa0776560:intron 30.0%
!! TTTGGATTGGTATTTCAACA+TGG + chr5_2:54796067-54796086 Msa0776560:intron 30.0%
!! TTGGATTGGTATTTCAACAT+GGG + chr5_2:54796068-54796087 Msa0776560:intron 30.0%
! GTTTAGAATGTTTGAATGAG+AGG + chr5_2:54796225-54796244 Msa0776560:intron 30.0%
TTACAAACCAAAAGTTTCCT+TGG + chr5_2:54796254-54796273 Msa0776560:intron 30.0%
ATTGAATAGAAAAGAGTCAC+GGG - chr5_2:54796338-54796357 None:intergenic 30.0%
!!! TTTTTGGTTGAACTCATATG+GGG + chr5_2:54796432-54796451 Msa0776560:intron 30.0%
CGACAAGAAAAAGCTTAATA+AGG - chr5_2:54796488-54796507 None:intergenic 30.0%
GGTACAATTGTAGAAACTTA+GGG + chr5_2:54796563-54796582 Msa0776560:intron 30.0%
!! AGCCTTATTTATACTACTCT+AGG + chr5_2:54796777-54796796 Msa0776560:intron 30.0%
GACATTACTAAATAAGCACT+AGG - chr5_2:54796902-54796921 None:intergenic 30.0%
TAGGATACTAGGGAATAATA+AGG - chr5_2:54796934-54796953 None:intergenic 30.0%
ACAGTCAAAATGAAGAAGAA+AGG + chr5_2:54797403-54797422 Msa0776560:intron 30.0%
CAGTCAAAATGAAGAAGAAA+GGG + chr5_2:54797404-54797423 Msa0776560:intron 30.0%
GGATGTGATTAAAATCAAGT+TGG - chr5_2:54797849-54797868 None:intergenic 30.0%
ATACTTGTCACATTCATCTT+GGG - chr5_2:54797937-54797956 None:intergenic 30.0%
GTGTGATGTAAGAAAATGTA+TGG - chr5_2:54797979-54797998 None:intergenic 30.0%
AAAATTAAAGTTGCCGACAA+AGG - chr5_2:54798114-54798133 None:intergenic 30.0%
AGATAGTCTTCGTCATATAT+TGG + chr5_2:54798263-54798282 Msa0776560:intron 30.0%
AATCACTTCATGAATGTTAG+CGG + chr5_2:54798307-54798326 Msa0776560:intron 30.0%
CCGTATTCATCATCATATAT+TGG + chr5_2:54798332-54798351 Msa0776560:intron 30.0%
TATACGATTCACACAATCTA+AGG + chr5_2:54798517-54798536 Msa0776560:intron 30.0%
ACATGAAACGTTTAGGTATA+TGG + chr5_2:54798561-54798580 Msa0776560:intron 30.0%
CATGAAACGTTTAGGTATAT+GGG + chr5_2:54798562-54798581 Msa0776560:intron 30.0%
! TAAATGAGGAAATAGGTTGA+TGG + chr5_2:54798618-54798637 Msa0776560:intron 30.0%
! TTGAGAATCGGTATGATTTT+TGG + chr5_2:54798652-54798671 Msa0776560:intron 30.0%
!! AGTTGGTATGAAGAGTTTTT+AGG + chr5_2:54798686-54798705 Msa0776560:intron 30.0%
AATGAGGAGGTAAATTCTTA+CGG + chr5_2:54798741-54798760 Msa0776560:intron 30.0%
AAAATGAAAAGCAAGTGTGA+AGG - chr5_2:54798812-54798831 None:intergenic 30.0%
TGAAGAAACATGCTTCAATT+TGG - chr5_2:54798847-54798866 None:intergenic 30.0%
ACATGTATTTGAGTATAAGG+AGG - chr5_2:54798910-54798929 None:intergenic 30.0%
! TAGACATTCCAGATTTTGAA+GGG - chr5_2:54798977-54798996 None:intergenic 30.0%
TTTCTCAAAACTTCACTTTG+CGG - chr5_2:54799304-54799323 None:intergenic 30.0%
!! AGCCTTATTTATACTACTCT+AGG + chr5_2:54796777-54796796 Msa0776560:intron 30.0%
GACATTACTAAATAAGCACT+AGG - chr5_2:54796902-54796921 None:intergenic 30.0%
!! TAGAAGTCTCTAGAATACTA+GGG - chr5_2:54799815-54799834 None:intergenic 30.0%
!! ATAGAAGTCTCTAGAATACT+AGG - chr5_2:54799816-54799835 None:intergenic 30.0%
GAATTATGTGAAAAGATTCC+AGG - chr5_2:54800030-54800049 None:intergenic 30.0%
AATGTTTGTGAGAGAATTCA+TGG - chr5_2:54800076-54800095 None:intergenic 30.0%
TTATTGAAACTCATCAACTC+TGG - chr5_2:54800099-54800118 None:intergenic 30.0%
GAACACAACTTTCAAATCAA+TGG - chr5_2:54800157-54800176 None:intergenic 30.0%
!!! TTTTTTCTTCTTGCTTTTCC+TGG + chr5_2:54800227-54800246 Msa0776560:intron 30.0%
ATCAGGTGTAAACCAAATAA+AGG + chr5_2:54800407-54800426 Msa0776560:intron 30.0%
AGAGACTAATAGTGTTAGAT+AGG + chr5_2:54800557-54800576 Msa0776560:intron 30.0%
ACTAATAGTGTTAGATAGGA+AGG + chr5_2:54800561-54800580 Msa0776560:intron 30.0%
CTAATAGTGTTAGATAGGAA+GGG + chr5_2:54800562-54800581 Msa0776560:intron 30.0%
GTTTAGTTAAAAACTAGAGG+GGG + chr5_2:54800625-54800644 Msa0776560:intron 30.0%
! TGTCATTTAAGAATACCTCA+AGG + chr5_2:54800654-54800673 Msa0776560:intron 30.0%
GTCATTTAAGAATACCTCAA+GGG + chr5_2:54800655-54800674 Msa0776560:intron 30.0%
!! GATGAAATGTGTTATTTGCT+TGG + chr5_2:54800759-54800778 Msa0776560:intron 30.0%
AGACTAATATAAAAGCAAGC+TGG - chr5_2:54801043-54801062 None:intergenic 30.0%
AATTACAAAGCAAGTAAGAC+TGG + chr5_2:54801094-54801113 Msa0776560:CDS 30.0%
ATACCACTTTACATTGACAA+TGG - chr5_2:54801149-54801168 None:intergenic 30.0%
CAACTATCAAAGTTTGATCT+TGG + chr5_2:54801169-54801188 Msa0776560:three_prime_UTR 30.0%
TCAATGTAAATGCTCATGAA+TGG - chr5_2:54801244-54801263 None:intergenic 30.0%
GGGAAATTAAACAATAGTTG+TGG + chr5_2:54801692-54801711 Msa0776560:three_prime_UTR 30.0%
ATTATAACAGGAGCAATTTG+GGG - chr5_2:54801963-54801982 Msa0776570:CDS 30.0%
GATTATAACAGGAGCAATTT+GGG - chr5_2:54801964-54801983 Msa0776570:CDS 30.0%
TGATTATAACAGGAGCAATT+TGG - chr5_2:54801965-54801984 Msa0776570:CDS 30.0%
!! CTAAGTGTACTGATTATAAC+AGG - chr5_2:54801975-54801994 Msa0776570:CDS 30.0%
TAACGCTACAGAAATGAAAA+AGG + chr5_2:54802148-54802167 Msa0776560:three_prime_UTR 30.0%
AACTAACCACATTCGTTTCT+AGG + chr5_2:54795498-54795517 Msa0776560:five_prime_UTR 35.0%
TTCAAACCTAGAAACGAATG+TGG - chr5_2:54795507-54795526 None:intergenic 35.0%
AGAGTTTGAATTGGCATACT+TGG - chr5_2:54795735-54795754 None:intergenic 35.0%
GAATAAATTTGTAGGCAGCT+TGG + chr5_2:54796041-54796060 Msa0776560:intron 35.0%
! AGTGATACCAAGGAAACTTT+TGG - chr5_2:54796264-54796283 None:intergenic 35.0%
!! AAGCTTTTTCTTGTCGATGT+TGG + chr5_2:54796492-54796511 Msa0776560:intron 35.0%
ATTGAGTTATTTGTCGGTGA+CGG + chr5_2:54796542-54796561 Msa0776560:intron 35.0%
CGGTACAATTGTAGAAACTT+AGG + chr5_2:54796562-54796581 Msa0776560:intron 35.0%
! TGTCATTTAAGAATACCTCG+TGG - chr5_2:54796605-54796624 None:intergenic 35.0%
TGACAACAACTTTGACTCTA+TGG + chr5_2:54796658-54796677 Msa0776560:intron 35.0%
CTCTAGTACATAAGACTAGA+AGG + chr5_2:54796855-54796874 Msa0776560:intron 35.0%
!! TAGAAGTCTCTAGGATACTA+GGG - chr5_2:54796944-54796963 None:intergenic 35.0%
!! ATAGAAGTCTCTAGGATACT+AGG - chr5_2:54796945-54796964 None:intergenic 35.0%
! AACAAGAAAATCTTGACTCG+AGG - chr5_2:54797078-54797097 None:intergenic 35.0%
!! TATTCTGAAATCTTGACTCG+AGG - chr5_2:54797104-54797123 None:intergenic 35.0%
! AGAACAGAGATGAGATTTTG+TGG - chr5_2:54797362-54797381 None:intergenic 35.0%
GATTAGAGATCTAGAGATCT+AGG + chr5_2:54797442-54797461 Msa0776560:intron 35.0%
TTGGAACATAGTTGTCAAAG+CGG - chr5_2:54797679-54797698 None:intergenic 35.0%
AAAGCGGAATTCAATCTACT+TGG - chr5_2:54797803-54797822 None:intergenic 35.0%
GATACTTGTCACATTCATCT+TGG - chr5_2:54797938-54797957 None:intergenic 35.0%
TGAATGTGACAAGTATCCAT+TGG + chr5_2:54797941-54797960 Msa0776560:intron 35.0%
ATGGTGTGATGTTATTCCAA+TGG - chr5_2:54797960-54797979 None:intergenic 35.0%
TGAATATGGTGAATCTTTGG+AGG - chr5_2:54798237-54798256 None:intergenic 35.0%
TGGTGAATATGGTGAATCTT+TGG - chr5_2:54798240-54798259 None:intergenic 35.0%
AAAGATTCACCATATTCACC+AGG + chr5_2:54798239-54798258 Msa0776560:intron 35.0%
! TGTGAAGTGTTTGAAGAAGA+GGG - chr5_2:54798368-54798387 None:intergenic 35.0%
! TTGTGAAGTGTTTGAAGAAG+AGG - chr5_2:54798369-54798388 None:intergenic 35.0%
TAGTATTCACCATCGTCAAT+GGG - chr5_2:54798499-54798518 None:intergenic 35.0%
ATAGTATTCACCATCGTCAA+TGG - chr5_2:54798500-54798519 None:intergenic 35.0%
CTAAACGTTTCATGTGTCAA+GGG - chr5_2:54798556-54798575 None:intergenic 35.0%
TCTCTTTGATTGTGTTACGT+TGG + chr5_2:54798591-54798610 Msa0776560:intron 35.0%
CTCTTTGATTGTGTTACGTT+GGG + chr5_2:54798592-54798611 Msa0776560:intron 35.0%
TCTTTGATTGTGTTACGTTG+GGG + chr5_2:54798593-54798612 Msa0776560:intron 35.0%
!! AGGAAATAGGTTGATGGATT+AGG + chr5_2:54798624-54798643 Msa0776560:intron 35.0%
!! GGAAATAGGTTGATGGATTA+GGG + chr5_2:54798625-54798644 Msa0776560:intron 35.0%
!! GAAATAGGTTGATGGATTAG+GGG + chr5_2:54798626-54798645 Msa0776560:intron 35.0%
!! GATTAGGGGTTTTTGAGAAT+CGG + chr5_2:54798640-54798659 Msa0776560:intron 35.0%
!! AGAATCGGTATGATTTTTGG+TGG + chr5_2:54798655-54798674 Msa0776560:intron 35.0%
!!! GAATCGGTATGATTTTTGGT+GGG + chr5_2:54798656-54798675 Msa0776560:intron 35.0%
!!! AATCGGTATGATTTTTGGTG+GGG + chr5_2:54798657-54798676 Msa0776560:intron 35.0%
! TTGGCTTGATAATAATGAGG+AGG + chr5_2:54798728-54798747 Msa0776560:intron 35.0%
ATGAGGAGGTAAATTCTTAC+GGG + chr5_2:54798742-54798761 Msa0776560:intron 35.0%
AAAAAGCAAGATCAAGACGT+GGG - chr5_2:54798789-54798808 None:intergenic 35.0%
AGTATAAGGAGGTTCCATAA+GGG - chr5_2:54798899-54798918 None:intergenic 35.0%
AACCAATCCAGAAAATCATC+TGG + chr5_2:54798942-54798961 Msa0776560:intron 35.0%
! AACCAGATGATTTTCTGGAT+TGG - chr5_2:54798947-54798966 None:intergenic 35.0%
! TCTACAACCAGATGATTTTC+TGG - chr5_2:54798952-54798971 None:intergenic 35.0%
TGTAGATTCCCTTCAAAATC+TGG + chr5_2:54798966-54798985 Msa0776560:intron 35.0%
! GTAGACATTCCAGATTTTGA+AGG - chr5_2:54798978-54798997 None:intergenic 35.0%
TGAAAGAAGTTTGCAAGAGA+TGG - chr5_2:54799168-54799187 None:intergenic 35.0%
! CTTCTTTCATTTTGTCTTCG+AGG + chr5_2:54799179-54799198 Msa0776560:intron 35.0%
!!! TTTTTTTTGGGTGAAGATCG+TGG + chr5_2:54799231-54799250 Msa0776560:intron 35.0%
AGTTTGAGCGAAGAAATCAA+CGG - chr5_2:54799360-54799379 None:intergenic 35.0%
TCGCTCAAACTCAAACAAAA+TGG + chr5_2:54799369-54799388 Msa0776560:intron 35.0%
CTCAAACTCAAACAAAATGG+AGG + chr5_2:54799372-54799391 Msa0776560:intron 35.0%
! TGTTAGTTTCGCGAACAAAA+TGG + chr5_2:54799395-54799414 Msa0776560:intron 35.0%
CTTTGTGAAACTTCACTTTG+CGG - chr5_2:54799421-54799440 None:intergenic 35.0%
CTCTAGTACATAAGACTAGA+AGG + chr5_2:54796855-54796874 Msa0776560:intron 35.0%
!! TACGATTTTGATGTTCGAGA+GGG - chr5_2:54799946-54799965 None:intergenic 35.0%
!! TTACGATTTTGATGTTCGAG+AGG - chr5_2:54799947-54799966 None:intergenic 35.0%
AATAACTACACTCAAATCCC+TGG + chr5_2:54800009-54800028 Msa0776560:intron 35.0%
TGAGAGAATTCATGGTGTTT+GGG - chr5_2:54800068-54800087 None:intergenic 35.0%
CAACGTTAAGGGAGATATAT+AGG - chr5_2:54800186-54800205 None:intergenic 35.0%
!!! TTTTGTTCGTTTTGCTGTTG+AGG + chr5_2:54800303-54800322 Msa0776560:intron 35.0%
!!! TTTGTTCGTTTTGCTGTTGA+GGG + chr5_2:54800304-54800323 Msa0776560:intron 35.0%
! TTGAGGGTTTTGCAGAATTT+TGG + chr5_2:54800320-54800339 Msa0776560:intron 35.0%
! TGAGGGTTTTGCAGAATTTT+GGG + chr5_2:54800321-54800340 Msa0776560:intron 35.0%
ATCGACAGAAAACTTTGATC+AGG + chr5_2:54800390-54800409 Msa0776560:intron 35.0%
! TGTTTACGGCAATTGATTTC+AGG + chr5_2:54800807-54800826 Msa0776560:intron 35.0%
TCTTATAAAAACTTGTGGCG+TGG + chr5_2:54800839-54800858 Msa0776560:intron 35.0%
! TTTACTCTTTGTTGTGTTGC+AGG + chr5_2:54800931-54800950 Msa0776560:intron 35.0%
! TTACTCTTTGTTGTGTTGCA+GGG + chr5_2:54800932-54800951 Msa0776560:intron 35.0%
ATGTGGTGGTCTTTGTAATA+TGG + chr5_2:54800958-54800977 Msa0776560:CDS 35.0%
TGTGGTGGTCTTTGTAATAT+GGG + chr5_2:54800959-54800978 Msa0776560:CDS 35.0%
CTTCCATTGTCAATGTAAAG+TGG + chr5_2:54801143-54801162 Msa0776560:exon 35.0%
TCCAATTCCAGTAAAAAAGG+CGG - chr5_2:54801215-54801234 None:intergenic 35.0%
CGATCCAATTCCAGTAAAAA+AGG - chr5_2:54801218-54801237 None:intergenic 35.0%
! TTTTTACTGGAATTGGATCG+CGG + chr5_2:54801218-54801237 Msa0776560:three_prime_UTR 35.0%
TACATCCAAACAAGCTTATC+CGG + chr5_2:54801347-54801366 Msa0776560:three_prime_UTR 35.0%
AGATATATGTGACAAGAACC+TGG - chr5_2:54801398-54801417 None:intergenic 35.0%
TAGCTGTGATATTATGCAGA+AGG + chr5_2:54801581-54801600 Msa0776560:three_prime_UTR 35.0%
! ACTACTATGGATTGAAGAAG+TGG + chr5_2:54801913-54801932 Msa0776560:three_prime_UTR 35.0%
! CAAAAAAGCATAGCACAACT+TGG - chr5_2:54802034-54802053 Msa0776570:CDS 35.0%
!!! CAAGTTGTGCTATGCTTTTT+TGG + chr5_2:54802032-54802051 Msa0776560:three_prime_UTR 35.0%
AATCAGTATCCACATGAAAC+AGG + chr5_2:54802061-54802080 Msa0776560:three_prime_UTR 35.0%
ATCAGTATCCACATGAAACA+GGG + chr5_2:54802062-54802081 Msa0776560:three_prime_UTR 35.0%
CAGGGATAAGCTAATGTTAT+TGG + chr5_2:54802080-54802099 Msa0776560:three_prime_UTR 35.0%
CTACAGAAATGAAAAAGGTC+AGG + chr5_2:54802153-54802172 Msa0776560:three_prime_UTR 35.0%
AATTCAGATACACCAGCAAA+TGG - chr5_2:54802232-54802251 Msa0776570:CDS 35.0%
GTTATCATGGTATTGCTCCT+GGG - chr5_2:54795605-54795624 None:intergenic 40.0%
AAGATTCGATCGCGTTATCA+TGG - chr5_2:54795618-54795637 None:intergenic 40.0%
AGATTCGATCCAAACATGAC+TGG + chr5_2:54795660-54795679 Msa0776560:CDS 40.0%
GATTCGATCCAAACATGACT+GGG + chr5_2:54795661-54795680 Msa0776560:CDS 40.0%
GGAAGAAGTAGAAGAGAAGA+AGG - chr5_2:54795696-54795715 None:intergenic 40.0%
!! CTTGGAAGTGTTGGTGATAT+TGG - chr5_2:54795717-54795736 None:intergenic 40.0%
! ATTGGCATACTTGGAAGTGT+TGG - chr5_2:54795726-54795745 None:intergenic 40.0%
CATTTAAGAATACCTCGTGG+AGG - chr5_2:54796602-54796621 None:intergenic 40.0%
AACTTTGACTCTATGGCTCA+GGG + chr5_2:54796665-54796684 Msa0776560:intron 40.0%
CTTGACTATCCCAAAACACT+AGG + chr5_2:54796749-54796768 Msa0776560:intron 40.0%
TCATTCTCTATCATTCTCCC+CGG + chr5_2:54797036-54797055 Msa0776560:intron 40.0%
AACAGAGCCTTGGAATACTT+TGG - chr5_2:54797142-54797161 None:intergenic 40.0%
GCTTTGACAACTATGTTCCA+AGG + chr5_2:54797678-54797697 Msa0776560:intron 40.0%
!! GTTGGAACTGATTTTGTCCT+TGG - chr5_2:54797698-54797717 None:intergenic 40.0%
! ACCACTCAATGATGGAAAAG+CGG - chr5_2:54797819-54797838 None:intergenic 40.0%
CAAAACCTACACTTTCGTGA+AGG - chr5_2:54797870-54797889 None:intergenic 40.0%
!! CTTCACGAAAGTGTAGGTTT+TGG + chr5_2:54797868-54797887 Msa0776560:intron 40.0%
GATCGTCATGCATTATTCGA+GGG - chr5_2:54797899-54797918 None:intergenic 40.0%
TGATCGTCATGCATTATTCG+AGG - chr5_2:54797900-54797919 None:intergenic 40.0%
ATGGCTCGATAAGGATAATG+AGG - chr5_2:54798066-54798085 None:intergenic 40.0%
TAGTCTACAATGGCTCGATA+AGG - chr5_2:54798075-54798094 None:intergenic 40.0%
CATTGTAGACTACATGGATG+CGG + chr5_2:54798083-54798102 Msa0776560:intron 40.0%
ATTGTAGACTACATGGATGC+GGG + chr5_2:54798084-54798103 Msa0776560:intron 40.0%
GACATTACAAACCATGTCTC+TGG + chr5_2:54798184-54798203 Msa0776560:intron 40.0%
GACTATCTTCCTGGTGAATA+TGG - chr5_2:54798251-54798270 None:intergenic 40.0%
TATGACGAAGACTATCTTCC+TGG - chr5_2:54798260-54798279 None:intergenic 40.0%
TCATTTGAAGGAGAGTCGAT+GGG - chr5_2:54798431-54798450 None:intergenic 40.0%
ATCATTTGAAGGAGAGTCGA+TGG - chr5_2:54798432-54798451 None:intergenic 40.0%
AGTATTCACCATCGTCAATG+GGG - chr5_2:54798498-54798517 None:intergenic 40.0%
CCTAAACGTTTCATGTGTCA+AGG - chr5_2:54798557-54798576 None:intergenic 40.0%
CCTTGACACATGAAACGTTT+AGG + chr5_2:54798554-54798573 Msa0776560:intron 40.0%
TGGGGTCTAAATGAGGAAAT+AGG + chr5_2:54798611-54798630 Msa0776560:intron 40.0%
!!! ATCGGTATGATTTTTGGTGG+GGG + chr5_2:54798658-54798677 Msa0776560:intron 40.0%
GAAAAAGCAAGATCAAGACG+TGG - chr5_2:54798790-54798809 None:intergenic 40.0%
TGAAGCATGTTTCTTCAGCT+TGG + chr5_2:54798850-54798869 Msa0776560:intron 40.0%
GAGTATAAGGAGGTTCCATA+AGG - chr5_2:54798900-54798919 None:intergenic 40.0%
AGATTCGAAGATGATGTCTC+CGG - chr5_2:54799068-54799087 None:intergenic 40.0%
! TCCTTTGTTGTGCTTCCAAA+AGG + chr5_2:54799087-54799106 Msa0776560:intron 40.0%
! CCTTTGTTGTGCTTCCAAAA+GGG + chr5_2:54799088-54799107 Msa0776560:intron 40.0%
TGCAAGAGATGGAAGAAATG+AGG - chr5_2:54799157-54799176 None:intergenic 40.0%
! CTTTCATTTTGTCTTCGAGG+TGG + chr5_2:54799182-54799201 Msa0776560:intron 40.0%
CGCAAAGTGAAGTTTCACAA+AGG + chr5_2:54799419-54799438 Msa0776560:intron 40.0%
!!! AGTGAGTTTTCAAGTGAGCA+AGG - chr5_2:54799450-54799469 None:intergenic 40.0%
CTTGACTATCCCAAAACACT+AGG + chr5_2:54796749-54796768 Msa0776560:intron 40.0%
GTTTGGGAGAGATCCATATA+GGG - chr5_2:54800052-54800071 None:intergenic 40.0%
TGTTTGGGAGAGATCCATAT+AGG - chr5_2:54800053-54800072 None:intergenic 40.0%
GTGAGAGAATTCATGGTGTT+TGG - chr5_2:54800069-54800088 None:intergenic 40.0%
CTTTCCAAATTCCACACCTA+GGG - chr5_2:54800264-54800283 None:intergenic 40.0%
ACTTTCCAAATTCCACACCT+AGG - chr5_2:54800265-54800284 None:intergenic 40.0%
TAGGTGTGGAATTTGGAAAG+TGG + chr5_2:54800264-54800283 Msa0776560:intron 40.0%
TCTCTCTTATCCATACTGCT+GGG - chr5_2:54800495-54800514 None:intergenic 40.0%
TTCTCTCTTATCCATACTGC+TGG - chr5_2:54800496-54800515 None:intergenic 40.0%
TAAGAGAGAATGTGAGTGTG+AGG + chr5_2:54800506-54800525 Msa0776560:intron 40.0%
AGTGTGAGGATGAGTGAAAT+TGG + chr5_2:54800520-54800539 Msa0776560:intron 40.0%
ATAGTGTTAGATAGGAAGGG+AGG + chr5_2:54800565-54800584 Msa0776560:intron 40.0%
AATTACACTCACTTCCCTTG+AGG - chr5_2:54800672-54800691 None:intergenic 40.0%
!!! ACCGCCTTTTTTACTGGAAT+TGG + chr5_2:54801211-54801230 Msa0776560:three_prime_UTR 40.0%
TTCAATGACGAATGAGAAGC+TGG - chr5_2:54801268-54801287 None:intergenic 40.0%
TTCTCTAGTCAACTTGCGAT+AGG - chr5_2:54801312-54801331 None:intergenic 40.0%
GTGAAAGTTCGAATACTACC+AGG + chr5_2:54801519-54801538 Msa0776560:three_prime_UTR 40.0%
TGTAAAACCCTAGCAAATGC+TGG + chr5_2:54801782-54801801 Msa0776560:three_prime_UTR 40.0%
! TGATTTGCCAGCATTTGCTA+GGG - chr5_2:54801792-54801811 None:intergenic 40.0%
!! TTGATTTGCCAGCATTTGCT+AGG - chr5_2:54801793-54801812 None:intergenic 40.0%
GCACAACTTGGTATCTAAAC+TGG - chr5_2:54802022-54802041 Msa0776570:CDS 40.0%
TAGCTTATCCCTGTTTCATG+TGG - chr5_2:54802073-54802092 Msa0776570:CDS 40.0%
GTTACCATTCTTGCCAAGTT+TGG - chr5_2:54802132-54802151 Msa0776570:CDS 40.0%
ATAGCCTTCAGAAGTCTCTT+CGG - chr5_2:54802182-54802201 Msa0776570:CDS 40.0%
GTTCGTGCTTATAGAGAGAG+AGG + chr5_2:54795578-54795597 Msa0776560:five_prime_UTR 45.0%
CGTTATCATGGTATTGCTCC+TGG - chr5_2:54795606-54795625 None:intergenic 45.0%
AGAAGAGAAGAAGGAGACAG+AGG - chr5_2:54795687-54795706 None:intergenic 45.0%
TTGTAGGCAGCTTGGTTGTT+TGG + chr5_2:54796049-54796068 Msa0776560:intron 45.0%
GGTTGAACTCATATGGGGTA+AGG + chr5_2:54796437-54796456 Msa0776560:intron 45.0%
TGAACTCATATGGGGTAAGG+AGG + chr5_2:54796440-54796459 Msa0776560:intron 45.0%
GAACTCATATGGGGTAAGGA+GGG + chr5_2:54796441-54796460 Msa0776560:intron 45.0%
AAATTACACTCACCTCCACG+AGG + chr5_2:54796587-54796606 Msa0776560:intron 45.0%
CAACTTTGACTCTATGGCTC+AGG + chr5_2:54796664-54796683 Msa0776560:intron 45.0%
GACTATCCCAAAACACTAGG+TGG + chr5_2:54796752-54796771 Msa0776560:intron 45.0%
CATTCTCTATCATTCTCCCC+GGG + chr5_2:54797037-54797056 Msa0776560:intron 45.0%
! GCAGAGTCCAAAGTATTCCA+AGG + chr5_2:54797132-54797151 Msa0776560:intron 45.0%
CAAGGCTCTGTTGTCAATAG+CGG + chr5_2:54797150-54797169 Msa0776560:intron 45.0%
TTGTCAATAGCGGTCTAACG+CGG + chr5_2:54797160-54797179 Msa0776560:intron 45.0%
AGGCAAAAGCGGAACAAAAG+CGG + chr5_2:54797248-54797267 Msa0776560:intron 45.0%
TAGTTGTCAAAGCGGAAACG+CGG - chr5_2:54797671-54797690 None:intergenic 45.0%
! TCAGTTCCAACATTTTCCCG+AGG + chr5_2:54797707-54797726 Msa0776560:intron 45.0%
ACTCGCAAAGGAACCATTCA+AGG - chr5_2:54797774-54797793 None:intergenic 45.0%
ACTTGGACTTTCACTCGCAA+AGG - chr5_2:54797786-54797805 None:intergenic 45.0%
!! TCCGCTTTTCCATCATTGAG+TGG + chr5_2:54797815-54797834 Msa0776560:intron 45.0%
GCACTTCTACCACTCAATGA+TGG - chr5_2:54797827-54797846 None:intergenic 45.0%
! CACATCCTTCACGAAAGTGT+AGG + chr5_2:54797862-54797881 Msa0776560:intron 45.0%
GCATGACGATCATATTGCCA+AGG + chr5_2:54797908-54797927 Msa0776560:intron 45.0%
CTTGTCACATTCATCTTGGG+AGG - chr5_2:54797934-54797953 None:intergenic 45.0%
TCGAGCCATTGTAGACTACA+TGG + chr5_2:54798077-54798096 Msa0776560:intron 45.0%
CGCATCCATGTAGTCTACAA+TGG - chr5_2:54798085-54798104 None:intergenic 45.0%
AACAACAATCGCCAGAGACA+TGG - chr5_2:54798198-54798217 None:intergenic 45.0%
GTTTATCTCCCCATTGACGA+TGG + chr5_2:54798487-54798506 Msa0776560:intron 45.0%
CGTTTCATGTGTCAAGGGTA+TGG - chr5_2:54798551-54798570 None:intergenic 45.0%
GTTACGTTGGGGTCTAAATG+AGG + chr5_2:54798604-54798623 Msa0776560:intron 45.0%
! TTTTGGTGGGGGAAAGAAGT+TGG + chr5_2:54798669-54798688 Msa0776560:intron 45.0%
AGATGATGAAGAGTCCCTAC+CGG + chr5_2:54799046-54799065 Msa0776560:intron 45.0%
!! CCCTTTTGGAAGCACAACAA+AGG - chr5_2:54799091-54799110 None:intergenic 45.0%
! TGCTTCCAAAAGGGCTTGTT+GGG + chr5_2:54799097-54799116 Msa0776560:intron 45.0%
!! TCGAGGTGGCATTTTGACAA+TGG + chr5_2:54799196-54799215 Msa0776560:intron 45.0%
!!! TTTTTGGGTGAAGATCGTGG+CGG + chr5_2:54799234-54799253 Msa0776560:intron 45.0%
! GTGTTAGCTTCGCGAACAAA+TGG + chr5_2:54799278-54799297 Msa0776560:intron 45.0%
AAGAGCTGGTTACGATACCT+CGG - chr5_2:54799503-54799522 None:intergenic 45.0%
ACCAGCTCTTATGCCAAATC+TGG + chr5_2:54799513-54799532 Msa0776560:intron 45.0%
! TCTTATGCCAAATCTGGCTC+AGG + chr5_2:54799519-54799538 Msa0776560:intron 45.0%
! CTTATGCCAAATCTGGCTCA+GGG + chr5_2:54799520-54799539 Msa0776560:intron 45.0%
! TTTTGTCCCTGAGCCAGATT+TGG - chr5_2:54799529-54799548 None:intergenic 45.0%
! AAATCTGGCTCAGGGACAAA+AGG + chr5_2:54799528-54799547 Msa0776560:intron 45.0%
GACTATCCCAAAACACTAGG+TGG + chr5_2:54796752-54796771 Msa0776560:intron 45.0%
!!! AGTTTTGAGTTCCCTAGGTG+TGG + chr5_2:54800250-54800269 Msa0776560:intron 45.0%
AGTTCCCTAGGTGTGGAATT+TGG + chr5_2:54800257-54800276 Msa0776560:intron 45.0%
GTAAAGATTGCCCAGCAGTA+TGG + chr5_2:54800482-54800501 Msa0776560:intron 45.0%
GTGAGGATGAGTGAAATTGG+AGG + chr5_2:54800523-54800542 Msa0776560:intron 45.0%
!! CTTTGGGTTGCATGATACGA+TGG + chr5_2:54800892-54800911 Msa0776560:intron 45.0%
CAAAGCAAGTAAGACTGGCA+AGG + chr5_2:54801099-54801118 Msa0776560:CDS 45.0%
TGGCAAGGAAGAAGAAACGA+AGG + chr5_2:54801114-54801133 Msa0776560:CDS 45.0%
AAAAAAGGCGGTGAGAGAGA+AGG - chr5_2:54801203-54801222 None:intergenic 45.0%
!!! TCTCTCACCGCCTTTTTTAC+TGG + chr5_2:54801205-54801224 Msa0776560:three_prime_UTR 45.0%
TCCAAACAAGCTTATCCGGT+TGG + chr5_2:54801351-54801370 Msa0776560:three_prime_UTR 45.0%
! TCCAACCGGATAAGCTTGTT+TGG - chr5_2:54801355-54801374 None:intergenic 45.0%
AAACAAGCTTATCCGGTTGG+AGG + chr5_2:54801354-54801373 Msa0776560:three_prime_UTR 45.0%
TAAGTTACACCACCTCCAAC+CGG - chr5_2:54801369-54801388 None:intergenic 45.0%
TGGTGTAACTTAGTTGTGCC+AGG + chr5_2:54801377-54801396 Msa0776560:three_prime_UTR 45.0%
TCTTTACACAAGAGTTCGCC+TGG - chr5_2:54801540-54801559 None:intergenic 45.0%
TGCTGGCAAATCAATGTCTG+CGG + chr5_2:54801799-54801818 Msa0776560:three_prime_UTR 45.0%
!! ATTTGGGGCATTGTAGCACT+GGG - chr5_2:54801948-54801967 Msa0776570:CDS 45.0%
!! AATTTGGGGCATTGTAGCAC+TGG - chr5_2:54801949-54801968 Msa0776570:CDS 45.0%
TGGTATCTAAACTGGACGCT+AGG - chr5_2:54802014-54802033 Msa0776570:CDS 45.0%
AATGGAACAGACCTTGTCCA+AGG - chr5_2:54802214-54802233 Msa0776570:CDS 45.0%
ACAAGGTCTGTTCCATTTGC+TGG + chr5_2:54802217-54802236 Msa0776560:three_prime_UTR 45.0%
!! AATAAAAAAATAAAATACAT+GGG - chr5_2:54795872-54795891 None:intergenic 5.0%
!! AAATAAAAAAATAAAATACA+TGG - chr5_2:54795873-54795892 None:intergenic 5.0%
CTTATAGAGAGAGAGGACCC+AGG + chr5_2:54795585-54795604 Msa0776560:five_prime_UTR 50.0%
GGCAGCTTGGTTGTTTGGAT+TGG + chr5_2:54796054-54796073 Msa0776560:intron 50.0%
ATATGGGGTAAGGAGGGTGA+AGG + chr5_2:54796447-54796466 Msa0776560:intron 50.0%
! GGCTCACCACCTAGTGTTTT+GGG - chr5_2:54796761-54796780 None:intergenic 50.0%
! AGGCTCACCACCTAGTGTTT+TGG - chr5_2:54796762-54796781 None:intergenic 50.0%
CGCTATTGACAACAGAGCCT+TGG - chr5_2:54797152-54797171 None:intergenic 50.0%
GGCAAAAGCGGAACAAAAGC+GGG + chr5_2:54797249-54797268 Msa0776560:intron 50.0%
! GTTCCAACATTTTCCCGAGG+TGG + chr5_2:54797710-54797729 Msa0776560:intron 50.0%
AAGCCACCTCGGGAAAATGT+TGG - chr5_2:54797716-54797735 None:intergenic 50.0%
! ACATTTTCCCGAGGTGGCTT+AGG + chr5_2:54797716-54797735 Msa0776560:intron 50.0%
ACATTCATCTTGGGAGGCCT+TGG - chr5_2:54797928-54797947 None:intergenic 50.0%
CGAAGATGATGTCTCCGGTA+GGG - chr5_2:54799063-54799082 None:intergenic 50.0%
TCGAAGATGATGTCTCCGGT+AGG - chr5_2:54799064-54799083 None:intergenic 50.0%
GTGCTTCCAAAAGGGCTTGT+TGG + chr5_2:54799096-54799115 Msa0776560:intron 50.0%
! CAATGCCCAACAAGCCCTTT+TGG - chr5_2:54799105-54799124 None:intergenic 50.0%
!! GTGCGTGGTTGTTTTGTCGA+TGG + chr5_2:54799256-54799275 Msa0776560:intron 50.0%
GCCAGATTTGGCATAAGAGC+TGG - chr5_2:54799517-54799536 None:intergenic 50.0%
TGGCTCAGGGACAAAAGGTA+AGG + chr5_2:54799533-54799552 Msa0776560:intron 50.0%
! GGCTCACCACCTAGTGTTTT+GGG - chr5_2:54796761-54796780 None:intergenic 50.0%
! AGGCTCACCACCTAGTGTTT+TGG - chr5_2:54796762-54796781 None:intergenic 50.0%
CGAGAGGGAAGAGATTGAAG+AGG - chr5_2:54799931-54799950 None:intergenic 50.0%
CCTAGGGAACTCAAAACTCC+AGG - chr5_2:54800248-54800267 None:intergenic 50.0%
!!! CCTGGAGTTTTGAGTTCCCT+AGG + chr5_2:54800245-54800264 Msa0776560:intron 50.0%
TGCTGGGCAATCTTTACTCG+TGG - chr5_2:54800479-54800498 None:intergenic 50.0%
! CTCTTTGTTGTGTTGCAGGG+TGG + chr5_2:54800935-54800954 Msa0776560:intron 50.0%
GTAGAGCAACTCCTCCAATG+AGG + chr5_2:54802102-54802121 Msa0776560:three_prime_UTR 50.0%
CCATTCTTGCCAAGTTTGGC+AGG - chr5_2:54802128-54802147 Msa0776570:CDS 50.0%
CCTGCCAAACTTGGCAAGAA+TGG + chr5_2:54802125-54802144 Msa0776560:three_prime_UTR 50.0%
AAGGCTATTCGAAGCCACCT+TGG + chr5_2:54802194-54802213 Msa0776560:three_prime_UTR 50.0%
ATTCGAAGCCACCTTGGACA+AGG + chr5_2:54802200-54802219 Msa0776560:three_prime_UTR 50.0%
GACAGAGGCCCAGTCATGTT+TGG - chr5_2:54795672-54795691 None:intergenic 55.0%
CTCTATCATTCTCCCCGGGT+TGG + chr5_2:54797041-54797060 Msa0776560:intron 55.0%
AGGACGAGTCTCTTCCAACC+CGG - chr5_2:54797058-54797077 None:intergenic 55.0%
! CTTTTGCCTAACGCGCGACT+CGG - chr5_2:54797237-54797256 None:intergenic 55.0%
AGTCGCGCGTTAGGCAAAAG+CGG + chr5_2:54797237-54797256 Msa0776560:intron 55.0%
GGGCAAAAAGCGGGTCAATG+CGG + chr5_2:54797279-54797298 Msa0776560:intron 55.0%
GGCAAAAAGCGGGTCAATGC+GGG + chr5_2:54797280-54797299 Msa0776560:intron 55.0%
! TACCGCGCCGCGTCAATTTT+TGG + chr5_2:54797630-54797649 Msa0776560:intron 55.0%
! ACCGCGCCGCGTCAATTTTT+GGG + chr5_2:54797631-54797650 Msa0776560:intron 55.0%
GGCCACCCCAAAAATTGACG+CGG - chr5_2:54797640-54797659 None:intergenic 55.0%
TCCAGTTCCTAAGCCACCTC+GGG - chr5_2:54797726-54797745 None:intergenic 55.0%
GTCCAGTTCCTAAGCCACCT+CGG - chr5_2:54797727-54797746 None:intergenic 55.0%
GTTGTGTTGCAGGGTGGATG+TGG + chr5_2:54800941-54800960 Msa0776560:intron 55.0%
CAAGCTTATCCGGTTGGAGG+TGG + chr5_2:54801357-54801376 Msa0776560:three_prime_UTR 55.0%
ACTGGACGCTAGGAGCAGTT+GGG - chr5_2:54802004-54802023 Msa0776570:CDS 55.0%
AACTGGACGCTAGGAGCAGT+TGG - chr5_2:54802005-54802024 Msa0776570:CDS 55.0%
AGTTTGGCAGGCCTCATTGG+AGG - chr5_2:54802116-54802135 Msa0776570:CDS 55.0%
CCAAGTTTGGCAGGCCTCAT+TGG - chr5_2:54802119-54802138 Msa0776570:CDS 55.0%
CCAATGAGGCCTGCCAAACT+TGG + chr5_2:54802116-54802135 Msa0776560:three_prime_UTR 55.0%
GCAGCCGAAGAGACTTCTGA+AGG + chr5_2:54802175-54802194 Msa0776560:three_prime_UTR 55.0%
GGAACAGACCTTGTCCAAGG+TGG - chr5_2:54802211-54802230 Msa0776570:CDS 55.0%
GACGAGTCTCTTCCAACCCG+GGG - chr5_2:54797056-54797075 None:intergenic 60.0%
GGACGAGTCTCTTCCAACCC+GGG - chr5_2:54797057-54797076 None:intergenic 60.0%
GGAACAAAAGCGGGTCAGCG+CGG + chr5_2:54797258-54797277 Msa0776560:intron 60.0%
GAACAAAAGCGGGTCAGCGC+GGG + chr5_2:54797259-54797278 Msa0776560:intron 60.0%
AGCGGGTCAATGCGGGCAAA+AGG + chr5_2:54797287-54797306 Msa0776560:intron 60.0%
GGGTCAATGCGGGCAAAAGG+CGG + chr5_2:54797290-54797309 Msa0776560:intron 60.0%
GGTCAATGCGGGCAAAAGGC+GGG + chr5_2:54797291-54797310 Msa0776560:intron 60.0%
GGGTCAACGCGGGCAAAAAG+CGG + chr5_2:54797311-54797330 Msa0776560:intron 60.0%
GGTCAACGCGGGCAAAAAGC+GGG + chr5_2:54797312-54797331 Msa0776560:intron 60.0%
!! ATGTAAAAGCGCCCGCGTCG+CGG + chr5_2:54797602-54797621 Msa0776560:intron 60.0%
AATTGACGCGGCGCGGTAAG+CGG - chr5_2:54797628-54797647 None:intergenic 60.0%
CCCCAAAAATTGACGCGGCG+CGG - chr5_2:54797635-54797654 None:intergenic 60.0%
! CCGCGCCGCGTCAATTTTTG+GGG + chr5_2:54797632-54797651 Msa0776560:intron 60.0%
!! CGCCGCGTCAATTTTTGGGG+TGG + chr5_2:54797635-54797654 Msa0776560:intron 60.0%
TCCCGAGGTGGCTTAGGAAC+TGG + chr5_2:54797722-54797741 Msa0776560:intron 60.0%
GGATGCGGGTGCTCCTTTGT+CGG + chr5_2:54798098-54798117 Msa0776560:intron 60.0%
GTGTTGCAGGGTGGATGTGG+TGG + chr5_2:54800944-54800963 Msa0776560:intron 60.0%
GGGTCAGCGCGGGCAAAAAG+CGG + chr5_2:54797269-54797288 Msa0776560:intron 65.0%
GGTCAGCGCGGGCAAAAAGC+GGG + chr5_2:54797270-54797289 Msa0776560:intron 65.0%
GGGCAAAAGGCGGGTCAACG+CGG + chr5_2:54797300-54797319 Msa0776560:intron 65.0%
GGCAAAAGGCGGGTCAACGC+GGG + chr5_2:54797301-54797320 Msa0776560:intron 65.0%
GTCAAAGCGGAAACGCGGCG+CGG - chr5_2:54797666-54797685 None:intergenic 65.0%
GTGAAGATCGTGGCGGTGCG+TGG + chr5_2:54799241-54799260 Msa0776560:intron 65.0%
GGTCTAACGCGGCGCGATCG+CGG + chr5_2:54797171-54797190 Msa0776560:intron 70.0%
CGGTCGCGTTCTGACGCGCT+AGG - chr5_2:54797217-54797236 None:intergenic 70.0%
ACGCGACCGAGTCGCGCGTT+AGG + chr5_2:54797228-54797247 Msa0776560:intron 70.0%
! AACGCGGCGCGATCGCGGCG+CGG + chr5_2:54797176-54797195 Msa0776560:intron 80.0%
! GCGGTAAGCGGCCGCGACGC+GGG - chr5_2:54797616-54797635 None:intergenic 80.0%
! CGCGGTAAGCGGCCGCGACG+CGG - chr5_2:54797617-54797636 None:intergenic 80.0%
! AGCGGAAACGCGGCGCGGCG+CGG - chr5_2:54797661-54797680 None:intergenic 80.0%
! GGCGCGATCGCGGCGCGGAG+CGG + chr5_2:54797181-54797200 Msa0776560:intron 85.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 54795493 54802286 54795493 ID=Msa0776560;Name=Msa0776560
chr5_2 mRNA 54795493 54802286 54795493 ID=Msa0776560-mRNA-1;Parent=Msa0776560;Name=Msa0776560-mRNA-1;_AED=0.00;_eAED=0.00;_QI=124|1|1|1|0|1|2|1126|108
chr5_2 exon 54795493 54795735 54795493 ID=Msa0776560-mRNA-1:exon:16276;Parent=Msa0776560-mRNA-1
chr5_2 exon 54800953 54802286 54800953 ID=Msa0776560-mRNA-1:exon:16277;Parent=Msa0776560-mRNA-1
chr5_2 five_prime_UTR 54795493 54795616 54795493 ID=Msa0776560-mRNA-1:five_prime_utr;Parent=Msa0776560-mRNA-1
chr5_2 CDS 54795617 54795735 54795617 ID=Msa0776560-mRNA-1:cds;Parent=Msa0776560-mRNA-1
chr5_2 CDS 54800953 54801160 54800953 ID=Msa0776560-mRNA-1:cds;Parent=Msa0776560-mRNA-1
chr5_2 three_prime_UTR 54801161 54802286 54801161 ID=Msa0776560-mRNA-1:three_prime_utr;Parent=Msa0776560-mRNA-1
Gene Sequence

>Msa0776560

ATGATAACGCGATCGAATCTTGCAGAACAGCTGCGAGATTATCAGATTCGATCCAAACATGACTGGGCCTCTGTCTCCTTCTTCTCTTCTACTTCTTCCAATATCACCAACACTTCCAAGGTGGATGTGGTGGTCTTTGTAATATGGGAACTTGTTATATTAGCTTTCTTGGTTTTTTCAGTTGTTTCTTTGTACTTTAAGCACATCCAGCTTGCTTTTATATTAGTCTGCATCACAGTGCTTTTGCTTTTATGCATGAAAATTACAAAGCAAGTAAGACTGGCAAGGAAGAAGAAACGAAGGATGCTTCTTCCATTGTCAATGTAA
Protein sequence

>Msa0776560

MITRSNLAEQLRDYQIRSKHDWASVSFFSSTSSNITNTSKVDVVVFVIWELVILAFLVFSVVSLYFKHIQLAFILVCITVLLLLCMKITKQVRLARKKKRRMLLPLSM*