AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0385740

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0385740 MtrunA17_Chr3g0143691 100.000 108 0 0 1 108 1 108 7.87e-74 214
Msa0385740 MtrunA17_Chr8g0373451 43.519 108 55 3 1 108 1 102 1.26e-20 79.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0385740 AT1G20460.1 80.556 108 19 1 1 108 1 106 1.07e-52 160
Msa0385740 AT1G76185.1 77.778 108 22 1 1 108 1 106 6.05e-42 134

Find 90 sgRNAs with CRISPR-Local

Find 474 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTAACCACATTCGTTTCT+AGG 0.163156 3_1:+89439096 Msa0385740:five_prime_UTR
AATGCCAATATTTGACAATT+TGG 0.189532 3_1:-89445842 Msa0385750:CDS
CTTATGATTCATCAATGATA+TGG 0.219940 3_1:+89445261 Msa0385740:three_prime_UTR
ACTTGTTATATTAGCTTTCT+TGG 0.251758 3_1:+89444573 Msa0385740:CDS
TGATTATAACAGGAGCAATT+TGG 0.259052 3_1:-89445552 Msa0385750:CDS
AATTCCAAATTGTCAAATAT+TGG 0.263642 3_1:+89445838 Msa0385740:three_prime_UTR
GATTATAACAGGAGCAATTT+GGG 0.286205 3_1:-89445551 Msa0385750:CDS
CTTGGAAGTGTTGGTGATAT+TGG 0.288093 3_1:-89439312 None:intergenic
CAGGGATAAGCTAATGTTAT+TGG 0.303074 3_1:+89445670 Msa0385740:three_prime_UTR
ATGTGGTGGTCTTTGTAATA+TGG 0.308754 3_1:+89444548 Msa0385740:CDS
CCAAGTTTGGCAGGCCTCAT+TGG 0.309414 3_1:-89445706 Msa0385750:CDS
ACAAGGTCTGTTCCATTTGC+TGG 0.320898 3_1:+89445807 Msa0385740:three_prime_UTR
ATATTGGCATTGCATAGATT+TGG 0.333932 3_1:+89445854 Msa0385740:three_prime_UTR
CAACTATCAAAGTTTGATCT+TGG 0.344411 3_1:+89444759 Msa0385740:three_prime_UTR
GTTACCATTCTTGCCAAGTT+TGG 0.346473 3_1:-89445719 Msa0385750:CDS
TAAAATCAAAACGACGACTA+TGG 0.346667 3_1:-89439132 None:intergenic
TAATCTGAATCTTACTACTA+TGG 0.355474 3_1:+89445490 Msa0385740:three_prime_UTR
CGTTATCATGGTATTGCTCC+TGG 0.359499 3_1:-89439201 None:intergenic
AATCAGTATCCACATGAAAC+AGG 0.375042 3_1:+89445651 Msa0385740:three_prime_UTR
GCACAACTTGGTATCTAAAC+TGG 0.375967 3_1:-89445609 Msa0385750:CDS
TTCACATATAAGTTCGTAAA+GGG 0.388893 3_1:-89445091 None:intergenic
GACAGAGGCCCAGTCATGTT+TGG 0.389709 3_1:-89439267 None:intergenic
CCAATGAGGCCTGCCAAACT+TGG 0.398074 3_1:+89445706 Msa0385740:three_prime_UTR
TCCAACCGGATAAGCTTGTT+TGG 0.405272 3_1:-89444942 None:intergenic
CTAAGTGTACTGATTATAAC+AGG 0.406004 3_1:-89445562 Msa0385750:CDS
AACTATCAAAGTTTGATCTT+GGG 0.408392 3_1:+89444760 Msa0385740:three_prime_UTR
CCATTCTTGCCAAGTTTGGC+AGG 0.412295 3_1:-89445715 Msa0385750:CDS
TACATCCAAACAAGCTTATC+CGG 0.412396 3_1:+89444937 Msa0385740:three_prime_UTR
TAACGCTACAGAAATGAAAA+AGG 0.435226 3_1:+89445738 Msa0385740:three_prime_UTR
GGAAGAAGTAGAAGAGAAGA+AGG 0.442136 3_1:-89439291 None:intergenic
CCTGCCAAACTTGGCAAGAA+TGG 0.448920 3_1:+89445715 Msa0385740:three_prime_UTR
AACTGGACGCTAGGAGCAGT+TGG 0.454856 3_1:-89445592 Msa0385750:CDS
TGGTGTAACTTAGTTGTGCC+AGG 0.460930 3_1:+89444967 Msa0385740:three_prime_UTR
AAGATTCGATCGCGTTATCA+TGG 0.461012 3_1:-89439213 None:intergenic
TTGATTTGCCAGCATTTGCT+AGG 0.463022 3_1:-89445380 None:intergenic
AATTTGGGGCATTGTAGCAC+TGG 0.471998 3_1:-89445536 Msa0385750:CDS
TTCAATGACGAATGAGAAGC+TGG 0.477316 3_1:-89444855 None:intergenic
TTATGATTCATCAATGATAT+GGG 0.486486 3_1:+89445262 Msa0385740:three_prime_UTR
CTTCCATTGTCAATGTAAAG+TGG 0.495198 3_1:+89444733 Msa0385740:exon
AATTCAGATACACCAGCAAA+TGG 0.496255 3_1:-89445819 Msa0385750:CDS
GTTGTGTTGCAGGGTGGATG+TGG 0.497670 3_1:+89444531 Msa0385740:intron
TGTGGTGGTCTTTGTAATAT+GGG 0.499279 3_1:+89444549 Msa0385740:CDS
GTTATCATGGTATTGCTCCT+GGG 0.514041 3_1:-89439200 None:intergenic
TCTTTACACAAGAGTTCGCC+TGG 0.515467 3_1:-89445127 None:intergenic
ACTGGACGCTAGGAGCAGTT+GGG 0.517354 3_1:-89445591 Msa0385750:CDS
TAAGTTACACCACCTCCAAC+CGG 0.519203 3_1:-89444956 None:intergenic
ATAGCCTTCAGAAGTCTCTT+CGG 0.519501 3_1:-89445769 Msa0385750:CDS
AATTACAAAGCAAGTAAGAC+TGG 0.525332 3_1:+89444684 Msa0385740:CDS
AGATTCGATCCAAACATGAC+TGG 0.525414 3_1:+89439258 Msa0385740:CDS
AATACAACAAAGTTAATATG+TGG 0.532838 3_1:-89445214 None:intergenic
TAGCTGTGATATTATGCAGA+AGG 0.533940 3_1:+89445171 Msa0385740:three_prime_UTR
TTTCACATATAAGTTCGTAA+AGG 0.541820 3_1:-89445092 None:intergenic
AGTTTGGCAGGCCTCATTGG+AGG 0.545784 3_1:-89445703 Msa0385750:CDS
CAAGCTTATCCGGTTGGAGG+TGG 0.549742 3_1:+89444947 Msa0385740:three_prime_UTR
ACTACTATGGATTGAAGAAG+TGG 0.554728 3_1:+89445503 Msa0385740:three_prime_UTR
TGTAAAACCCTAGCAAATGC+TGG 0.556081 3_1:+89445372 Msa0385740:three_prime_UTR
TAGCTTATCCCTGTTTCATG+TGG 0.559338 3_1:-89445660 Msa0385750:CDS
TGATTTGCCAGCATTTGCTA+GGG 0.562661 3_1:-89445379 None:intergenic
TCCAAACAAGCTTATCCGGT+TGG 0.566894 3_1:+89444941 Msa0385740:three_prime_UTR
ATTGGCATACTTGGAAGTGT+TGG 0.574281 3_1:-89439321 None:intergenic
AAACAAGCTTATCCGGTTGG+AGG 0.575266 3_1:+89444944 Msa0385740:three_prime_UTR
AAGTTGACTAGAGAATATAA+AGG 0.582501 3_1:+89444907 Msa0385740:three_prime_UTR
CTTATAGAGAGAGAGGACCC+AGG 0.586727 3_1:+89439183 Msa0385740:five_prime_UTR
AAATTAAACAATAGTTGTGG+TGG 0.589861 3_1:+89445285 Msa0385740:three_prime_UTR
GTTCGTGCTTATAGAGAGAG+AGG 0.591700 3_1:+89439176 Msa0385740:five_prime_UTR
AGATATATGTGACAAGAACC+TGG 0.592487 3_1:-89444985 None:intergenic
ATACCACTTTACATTGACAA+TGG 0.594407 3_1:-89444736 None:intergenic
AGACTAATATAAAAGCAAGC+TGG 0.596382 3_1:-89444630 None:intergenic
TCAATGTAAATGCTCATGAA+TGG 0.597739 3_1:-89444831 None:intergenic
ATTTGGGGCATTGTAGCACT+GGG 0.597853 3_1:-89445535 Msa0385750:CDS
ATTCGAAGCCACCTTGGACA+AGG 0.601009 3_1:+89445790 Msa0385740:three_prime_UTR
TGGTATCTAAACTGGACGCT+AGG 0.603358 3_1:-89445601 Msa0385750:CDS
AAGGCTATTCGAAGCCACCT+TGG 0.605278 3_1:+89445784 Msa0385740:three_prime_UTR
GGGAAATTAAACAATAGTTG+TGG 0.607700 3_1:+89445282 Msa0385740:three_prime_UTR
GTGTTGCAGGGTGGATGTGG+TGG 0.608417 3_1:+89444534 Msa0385740:intron
AGAAGAGAAGAAGGAGACAG+AGG 0.608463 3_1:-89439282 None:intergenic
TTCAAACCTAGAAACGAATG+TGG 0.608755 3_1:-89439102 None:intergenic
GATTCGATCCAAACATGACT+GGG 0.609935 3_1:+89439259 Msa0385740:CDS
TTCTCTAGTCAACTTGCGAT+AGG 0.610918 3_1:-89444899 None:intergenic
ATCAGTATCCACATGAAACA+GGG 0.613528 3_1:+89445652 Msa0385740:three_prime_UTR
CAAAGCAAGTAAGACTGGCA+AGG 0.617265 3_1:+89444689 Msa0385740:CDS
GTGAAAGTTCGAATACTACC+AGG 0.632377 3_1:+89445109 Msa0385740:three_prime_UTR
ATTATAACAGGAGCAATTTG+GGG 0.641883 3_1:-89445550 Msa0385750:CDS
TGCTGGCAAATCAATGTCTG+CGG 0.644552 3_1:+89445389 Msa0385740:three_prime_UTR
AATGGAACAGACCTTGTCCA+AGG 0.646427 3_1:-89445801 Msa0385750:CDS
AAAATATAACTTACACTACA+GGG 0.656372 3_1:+89445444 Msa0385740:three_prime_UTR
TGGCAAGGAAGAAGAAACGA+AGG 0.664230 3_1:+89444704 Msa0385740:CDS
GCAGCCGAAGAGACTTCTGA+AGG 0.664301 3_1:+89445765 Msa0385740:three_prime_UTR
GTAGAGCAACTCCTCCAATG+AGG 0.679984 3_1:+89445692 Msa0385740:three_prime_UTR
GGAACAGACCTTGTCCAAGG+TGG 0.695952 3_1:-89445798 Msa0385750:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATTATATTATTAATTA+AGG - chr3_1:89441152-89441171 None:intergenic 0.0%
!!! ATCAATTGATAATTTTTTTT+TGG + chr3_1:89440014-89440033 Msa0385740:intron 10.0%
!! TCTATTTAAATAACAAATAA+GGG + chr3_1:89444184-89444203 Msa0385740:intron 10.0%
!! ATTTCATAGAATAAATTTGT+AGG + chr3_1:89439631-89439650 Msa0385740:intron 15.0%
!!! TCACTAAATATTTTTGTTTA+AGG + chr3_1:89439877-89439896 Msa0385740:intron 15.0%
!!! TAAATATTTTTGTTTAAGGA+GGG + chr3_1:89439881-89439900 Msa0385740:intron 15.0%
!!! TTTGTTAGTATTGTTTTATT+AGG + chr3_1:89439970-89439989 Msa0385740:intron 15.0%
!! TAGAATAATAAAGAATAATG+TGG - chr3_1:89440592-89440611 None:intergenic 15.0%
!! AGAATTATAAAGAAAATGTA+TGG - chr3_1:89441589-89441608 None:intergenic 15.0%
!!! AAATTGTTTTTGAGTAAAAT+TGG + chr3_1:89442297-89442316 Msa0385740:intron 15.0%
!! GTCTATTTAAATAACAAATA+AGG + chr3_1:89444183-89444202 Msa0385740:intron 15.0%
!!! TTGGATTGATTATTATTTTA+TGG + chr3_1:89444368-89444387 Msa0385740:intron 15.0%
!! AAAATGAATAGAGTTTGAAT+TGG - chr3_1:89439342-89439361 None:intergenic 20.0%
!! CAAGAGAAATATTCATAATT+GGG - chr3_1:89439376-89439395 None:intergenic 20.0%
!! ACAAGAGAAATATTCATAAT+TGG - chr3_1:89439377-89439396 None:intergenic 20.0%
!! AACAAGAGAAATATATACAT+GGG - chr3_1:89439424-89439443 None:intergenic 20.0%
!! AAACAAGAGAAATATATACA+TGG - chr3_1:89439425-89439444 None:intergenic 20.0%
!! GCTTCAATTATAAGATTAAT+TGG + chr3_1:89439768-89439787 Msa0385740:intron 20.0%
!! AAAAATATTTAGTGATACCA+AGG - chr3_1:89439872-89439891 None:intergenic 20.0%
!!! CTAAATATTTTTGTTTAAGG+AGG + chr3_1:89439880-89439899 Msa0385740:intron 20.0%
!!! AAATATTTTTGTTTAAGGAG+GGG + chr3_1:89439882-89439901 Msa0385740:intron 20.0%
!! TAAATCATAATGCAAATAGA+GGG - chr3_1:89440234-89440253 None:intergenic 20.0%
!! ATAAATCATAATGCAAATAG+AGG - chr3_1:89440235-89440254 None:intergenic 20.0%
!!! TCATTTTGACTGTAAAAAAA+AGG - chr3_1:89440984-89441003 None:intergenic 20.0%
!! AAATGTTGTATCAAACTATA+TGG - chr3_1:89441729-89441748 None:intergenic 20.0%
!! TAATATCATTCATATGAAGT+TGG + chr3_1:89442588-89442607 Msa0385740:intron 20.0%
!!! TTGTCGATGATTTTTTTTTT+GGG + chr3_1:89442807-89442826 Msa0385740:intron 20.0%
!! CAGAATAATAAAGAATAATG+TGG - chr3_1:89443453-89443472 None:intergenic 20.0%
!! CACATTATTCTTTATTATTC+TGG + chr3_1:89440590-89440609 Msa0385740:intron 20.0%
!! CAAAATTATATCAACGTTAA+GGG - chr3_1:89443785-89443804 None:intergenic 20.0%
!! TCAAAATTATATCAACGTTA+AGG - chr3_1:89443786-89443805 None:intergenic 20.0%
!! CAAATAAAGGACATAATTAT+CGG + chr3_1:89444010-89444029 Msa0385740:intron 20.0%
!! ATTTAAATAACAAATAAGGG+AGG + chr3_1:89444187-89444206 Msa0385740:intron 20.0%
!! TGTAATTTACTTCTTGATAA+TGG + chr3_1:89444275-89444294 Msa0385740:intron 20.0%
!!! AAGTTTTTATAAGAAACTCA+AGG - chr3_1:89444423-89444442 None:intergenic 20.0%
!!! ATCTTTTTATTAATGCTCTT+TGG + chr3_1:89444465-89444484 Msa0385740:intron 20.0%
!!! TCTTTTTATTAATGCTCTTT+GGG + chr3_1:89444466-89444485 Msa0385740:intron 20.0%
!! AATACAACAAAGTTAATATG+TGG - chr3_1:89445217-89445236 None:intergenic 20.0%
!! TTATGATTCATCAATGATAT+GGG + chr3_1:89445262-89445281 Msa0385740:three_prime_UTR 20.0%
!! AAAAATATAACTTACACTAC+AGG + chr3_1:89445443-89445462 Msa0385740:three_prime_UTR 20.0%
!! AAAATATAACTTACACTACA+GGG + chr3_1:89445444-89445463 Msa0385740:three_prime_UTR 20.0%
!! AATTCCAAATTGTCAAATAT+TGG + chr3_1:89445838-89445857 Msa0385740:three_prime_UTR 20.0%
! TCAGATAGGTTAATGAAAAA+TGG - chr3_1:89439494-89439513 None:intergenic 25.0%
! CATCATAAGAATTATTTCAG+AGG - chr3_1:89439576-89439595 None:intergenic 25.0%
!!! CTCTGAAATAATTCTTATGA+TGG + chr3_1:89439574-89439593 Msa0385740:intron 25.0%
! ATGACTAACATTCTAACAAA+AGG - chr3_1:89439728-89439747 None:intergenic 25.0%
! TAGAATGTTAGTCATAATCT+TGG + chr3_1:89439733-89439752 Msa0385740:intron 25.0%
! ATAATCTTGGATGTGAAAAT+TGG + chr3_1:89439746-89439765 Msa0385740:intron 25.0%
!!! AGTCTGAGATATTTTTATAG+AGG - chr3_1:89439908-89439927 None:intergenic 25.0%
! AATTGAATAGAAAAGAGTCA+CGG - chr3_1:89439937-89439956 None:intergenic 25.0%
! ATGATTATAAGATGATTCAG+AGG - chr3_1:89439996-89440015 None:intergenic 25.0%
!!! TTTTTTTGGTTGAACTCATA+TGG + chr3_1:89440028-89440047 Msa0385740:intron 25.0%
!!! TTTTTTGGTTGAACTCATAT+GGG + chr3_1:89440029-89440048 Msa0385740:intron 25.0%
! TTGTCAATTGAGTTATTTGT+CGG + chr3_1:89440134-89440153 Msa0385740:intron 25.0%
!! ACAACTTTCTTTGAGAATAT+TGG - chr3_1:89440307-89440326 None:intergenic 25.0%
! TTCCTAGAGTAGTATAAATA+AGG - chr3_1:89440380-89440399 None:intergenic 25.0%
!! TTATTTATACTACTCTAGGA+AGG + chr3_1:89440379-89440398 Msa0385740:intron 25.0%
!!! TAGATATTTCGAGTTTGTAA+TGG - chr3_1:89440409-89440428 None:intergenic 25.0%
! TAGAAACAAAGAAAAGTCTA+TGG + chr3_1:89440427-89440446 Msa0385740:intron 25.0%
! ACATTACTAAATAAGCACTA+GGG - chr3_1:89440499-89440518 None:intergenic 25.0%
! AGTATAATATAGAAGTCTCT+AGG - chr3_1:89440551-89440570 None:intergenic 25.0%
! GAGACTTCTATATTATACTT+TGG + chr3_1:89440552-89440571 Msa0385740:intron 25.0%
! GAGAATGATGAAGAATAATA+TGG - chr3_1:89440622-89440641 None:intergenic 25.0%
!!! AACTTTGTTTTATCCTTGAA+TGG + chr3_1:89441346-89441365 Msa0385740:intron 25.0%
!! CCAATATATGATGATGAATA+CGG - chr3_1:89441923-89441942 None:intergenic 25.0%
! ATTTACGATGAAGAATATGT+TGG - chr3_1:89441989-89442008 None:intergenic 25.0%
! ACATATTCTTCATCGTAAAT+TGG + chr3_1:89441989-89442008 Msa0385740:intron 25.0%
! GAAATTCATGAATCATTTGA+AGG - chr3_1:89442031-89442050 None:intergenic 25.0%
!!! AAATTGGCTTGATAATAATG+AGG + chr3_1:89442313-89442332 Msa0385740:intron 25.0%
!!! TCTTTACTTTTTTTCCCTTA+TGG + chr3_1:89442470-89442489 Msa0385740:intron 25.0%
! TGAACATGTATTTGAGTATA+AGG - chr3_1:89442501-89442520 None:intergenic 25.0%
!!! GTTGTCGATGATTTTTTTTT+TGG + chr3_1:89442806-89442825 Msa0385740:intron 25.0%
! TTCCTAGAGTAGTATAAATA+AGG - chr3_1:89440380-89440399 None:intergenic 25.0%
!! TTATTTATACTACTCTAGGA+AGG + chr3_1:89440379-89440398 Msa0385740:intron 25.0%
!!! TAGATATTTCGAGTTTGTAA+TGG - chr3_1:89440409-89440428 None:intergenic 25.0%
! TAGAAACAAAGAAAAGTCTA+TGG + chr3_1:89440427-89440446 Msa0385740:intron 25.0%
! ACATTACTAAATAAGCACTA+GGG - chr3_1:89440499-89440518 None:intergenic 25.0%
! TAGAATACTAGGGAATAATA+AGG - chr3_1:89443393-89443412 None:intergenic 25.0%
! GAGACTTCTATATTATACTT+TGG + chr3_1:89440552-89440571 Msa0385740:intron 25.0%
! GAGAATGATGAAGAATAATA+TGG - chr3_1:89440622-89440641 None:intergenic 25.0%
!! AAACTGATAATGAATTGGTT+TGG - chr3_1:89443562-89443581 None:intergenic 25.0%
!! GAATCAAACTGATAATGAAT+TGG - chr3_1:89443567-89443586 None:intergenic 25.0%
! AGTGTAGTTATTTATGGAAA+AGG - chr3_1:89443589-89443608 None:intergenic 25.0%
! GATTTGAGTGTAGTTATTTA+TGG - chr3_1:89443595-89443614 None:intergenic 25.0%
! AATTATGTGAAAAGATTCCA+GGG - chr3_1:89443617-89443636 None:intergenic 25.0%
!! TTTTCACATAATTCCCTATA+TGG + chr3_1:89443624-89443643 Msa0385740:intron 25.0%
! ATGAGTTTCAATAAGCTAAT+CGG + chr3_1:89443693-89443712 Msa0385740:intron 25.0%
! CTACAAAAAACAATCTTTGT+TGG + chr3_1:89443719-89443738 Msa0385740:intron 25.0%
! CGATAATTATGTCCTTTATT+TGG - chr3_1:89444012-89444031 None:intergenic 25.0%
!! TTGATTAAGTGATAATTTGC+TGG - chr3_1:89444036-89444055 None:intergenic 25.0%
! AGTGTTTAGTTAAAAACTAG+AGG + chr3_1:89444212-89444231 Msa0385740:intron 25.0%
! GTGTTTAGTTAAAAACTAGA+GGG + chr3_1:89444213-89444232 Msa0385740:intron 25.0%
! TGTTTAGTTAAAAACTAGAG+GGG + chr3_1:89444214-89444233 Msa0385740:intron 25.0%
!! TTTTATGGTGTAGTTGTTTA+CGG + chr3_1:89444383-89444402 Msa0385740:intron 25.0%
! GAGTTTCTTATAAAAACTTG+TGG + chr3_1:89444424-89444443 Msa0385740:intron 25.0%
!!! ACTTGTTATATTAGCTTTCT+TGG + chr3_1:89444573-89444592 Msa0385740:CDS 25.0%
! AACTATCAAAGTTTGATCTT+GGG + chr3_1:89444760-89444779 Msa0385740:three_prime_UTR 25.0%
! AAGTTGACTAGAGAATATAA+AGG + chr3_1:89444907-89444926 Msa0385740:three_prime_UTR 25.0%
! TTCACATATAAGTTCGTAAA+GGG - chr3_1:89445094-89445113 None:intergenic 25.0%
! TTTCACATATAAGTTCGTAA+AGG - chr3_1:89445095-89445114 None:intergenic 25.0%
! CTTATGATTCATCAATGATA+TGG + chr3_1:89445261-89445280 Msa0385740:three_prime_UTR 25.0%
! AAATTAAACAATAGTTGTGG+TGG + chr3_1:89445285-89445304 Msa0385740:three_prime_UTR 25.0%
!!! TTTTTGTTGTTGTTACAAGA+TGG + chr3_1:89445418-89445437 Msa0385740:three_prime_UTR 25.0%
! TAATCTGAATCTTACTACTA+TGG + chr3_1:89445490-89445509 Msa0385740:three_prime_UTR 25.0%
! AATGCCAATATTTGACAATT+TGG - chr3_1:89445845-89445864 Msa0385750:CDS 25.0%
TAAAATCAAAACGACGACTA+TGG - chr3_1:89439135-89439154 None:intergenic 30.0%
!!! ACATGGGTTAGATTTTGATT+TGG - chr3_1:89439408-89439427 None:intergenic 30.0%
!!! ACATGGGTTAGATTTTGATT+TGG - chr3_1:89439408-89439427 None:intergenic 30.0%
GTCAAATTTGTGATTCAGAT+AGG - chr3_1:89439508-89439527 None:intergenic 30.0%
TCTGAATCACAAATTTGACA+TGG + chr3_1:89439509-89439528 Msa0385740:intron 30.0%
!! TTTGGATTGGTATTTCAACA+TGG + chr3_1:89439665-89439684 Msa0385740:intron 30.0%
!! TTGGATTGGTATTTCAACAT+GGG + chr3_1:89439666-89439685 Msa0385740:intron 30.0%
! GTTTAGAATGTTTGAATGAG+AGG + chr3_1:89439823-89439842 Msa0385740:intron 30.0%
TTACAAACCAAAAGTTTCCT+TGG + chr3_1:89439852-89439871 Msa0385740:intron 30.0%
ATTGAATAGAAAAGAGTCAC+GGG - chr3_1:89439936-89439955 None:intergenic 30.0%
!!! TTTTTGGTTGAACTCATATG+GGG + chr3_1:89440030-89440049 Msa0385740:intron 30.0%
CGACAAGAAAAAGCTTAATA+AGG - chr3_1:89440086-89440105 None:intergenic 30.0%
GGTACAATTGTAGAAACTTA+GGG + chr3_1:89440161-89440180 Msa0385740:intron 30.0%
!! AGCCTTATTTATACTACTCT+AGG + chr3_1:89440375-89440394 Msa0385740:intron 30.0%
GACATTACTAAATAAGCACT+AGG - chr3_1:89440500-89440519 None:intergenic 30.0%
TAGGATACTAGGGAATAATA+AGG - chr3_1:89440532-89440551 None:intergenic 30.0%
ACAGTCAAAATGAAGAAGAA+AGG + chr3_1:89440991-89441010 Msa0385740:intron 30.0%
CAGTCAAAATGAAGAAGAAA+GGG + chr3_1:89440992-89441011 Msa0385740:intron 30.0%
GGATGTGATTAAAATCAAGT+TGG - chr3_1:89441437-89441456 None:intergenic 30.0%
ATACTTGTCACATTCATCTT+GGG - chr3_1:89441525-89441544 None:intergenic 30.0%
GTGTGATGTAAGAAAATGTA+TGG - chr3_1:89441567-89441586 None:intergenic 30.0%
AAAATTAAAGTTGCCGACAA+AGG - chr3_1:89441702-89441721 None:intergenic 30.0%
AGATAGTCTTCGTCATATAT+TGG + chr3_1:89441851-89441870 Msa0385740:intron 30.0%
AATCACTTCATGAATGTTAG+CGG + chr3_1:89441895-89441914 Msa0385740:intron 30.0%
CCGTATTCATCATCATATAT+TGG + chr3_1:89441920-89441939 Msa0385740:intron 30.0%
TATACGATTCACACAATCTA+AGG + chr3_1:89442105-89442124 Msa0385740:intron 30.0%
ACATGAAACGTTTAGGTATA+TGG + chr3_1:89442149-89442168 Msa0385740:intron 30.0%
CATGAAACGTTTAGGTATAT+GGG + chr3_1:89442150-89442169 Msa0385740:intron 30.0%
! TAAATGAGGAAATAGGTTGA+TGG + chr3_1:89442206-89442225 Msa0385740:intron 30.0%
! TTGAGAATCGGTATGATTTT+TGG + chr3_1:89442240-89442259 Msa0385740:intron 30.0%
!! AGTTGGTATGAAGAGTTTTT+AGG + chr3_1:89442274-89442293 Msa0385740:intron 30.0%
AATGAGGAGGTAAATTCTTA+CGG + chr3_1:89442329-89442348 Msa0385740:intron 30.0%
AAAATGAAAAGCAAGTGTGA+AGG - chr3_1:89442400-89442419 None:intergenic 30.0%
TGAAGAAACATGCTTCAATT+TGG - chr3_1:89442435-89442454 None:intergenic 30.0%
ACATGTATTTGAGTATAAGG+AGG - chr3_1:89442498-89442517 None:intergenic 30.0%
! TAGACATTCCAGATTTTGAA+GGG - chr3_1:89442565-89442584 None:intergenic 30.0%
TTTCTCAAAACTTCACTTTG+CGG - chr3_1:89442892-89442911 None:intergenic 30.0%
AGTTTGTGCGAAAAAATCAA+CGG - chr3_1:89443063-89443082 None:intergenic 30.0%
!! AGCCTTATTTATACTACTCT+AGG + chr3_1:89440375-89440394 Msa0385740:intron 30.0%
GACATTACTAAATAAGCACT+AGG - chr3_1:89440500-89440519 None:intergenic 30.0%
!! TAGAAGTCTCTAGAATACTA+GGG - chr3_1:89443403-89443422 None:intergenic 30.0%
!! ATAGAAGTCTCTAGAATACT+AGG - chr3_1:89443404-89443423 None:intergenic 30.0%
GAATTATGTGAAAAGATTCC+AGG - chr3_1:89443618-89443637 None:intergenic 30.0%
AATGTTTGTGAGAGAATTCA+TGG - chr3_1:89443664-89443683 None:intergenic 30.0%
TTATTGAAACTCATCAACTC+TGG - chr3_1:89443687-89443706 None:intergenic 30.0%
GAACACAACTTTCAAATCAA+TGG - chr3_1:89443745-89443764 None:intergenic 30.0%
ATTGACAGAAAACTTTGATC+AGG + chr3_1:89443980-89443999 Msa0385740:intron 30.0%
ATCAGGTGTAAACCAAATAA+AGG + chr3_1:89443997-89444016 Msa0385740:intron 30.0%
AGAGACTAATAGTGTTAGAT+AGG + chr3_1:89444147-89444166 Msa0385740:intron 30.0%
ACTAATAGTGTTAGATAGGA+AGG + chr3_1:89444151-89444170 Msa0385740:intron 30.0%
CTAATAGTGTTAGATAGGAA+GGG + chr3_1:89444152-89444171 Msa0385740:intron 30.0%
GTTTAGTTAAAAACTAGAGG+GGG + chr3_1:89444215-89444234 Msa0385740:intron 30.0%
! TGTCATTTAAGAATACCTCA+AGG + chr3_1:89444244-89444263 Msa0385740:intron 30.0%
GTCATTTAAGAATACCTCAA+GGG + chr3_1:89444245-89444264 Msa0385740:intron 30.0%
!! GATGAAATGTGTTATTTGCT+TGG + chr3_1:89444349-89444368 Msa0385740:intron 30.0%
AGACTAATATAAAAGCAAGC+TGG - chr3_1:89444633-89444652 None:intergenic 30.0%
AATTACAAAGCAAGTAAGAC+TGG + chr3_1:89444684-89444703 Msa0385740:CDS 30.0%
ATACCACTTTACATTGACAA+TGG - chr3_1:89444739-89444758 None:intergenic 30.0%
CAACTATCAAAGTTTGATCT+TGG + chr3_1:89444759-89444778 Msa0385740:three_prime_UTR 30.0%
TCAATGTAAATGCTCATGAA+TGG - chr3_1:89444834-89444853 None:intergenic 30.0%
GGGAAATTAAACAATAGTTG+TGG + chr3_1:89445282-89445301 Msa0385740:three_prime_UTR 30.0%
ATTATAACAGGAGCAATTTG+GGG - chr3_1:89445553-89445572 Msa0385750:CDS 30.0%
GATTATAACAGGAGCAATTT+GGG - chr3_1:89445554-89445573 Msa0385750:CDS 30.0%
TGATTATAACAGGAGCAATT+TGG - chr3_1:89445555-89445574 Msa0385750:CDS 30.0%
!! CTAAGTGTACTGATTATAAC+AGG - chr3_1:89445565-89445584 Msa0385750:CDS 30.0%
TAACGCTACAGAAATGAAAA+AGG + chr3_1:89445738-89445757 Msa0385740:three_prime_UTR 30.0%
AACTAACCACATTCGTTTCT+AGG + chr3_1:89439096-89439115 Msa0385740:five_prime_UTR 35.0%
TTCAAACCTAGAAACGAATG+TGG - chr3_1:89439105-89439124 None:intergenic 35.0%
AGAGTTTGAATTGGCATACT+TGG - chr3_1:89439333-89439352 None:intergenic 35.0%
GAATAAATTTGTAGGCAGCT+TGG + chr3_1:89439639-89439658 Msa0385740:intron 35.0%
! AGTGATACCAAGGAAACTTT+TGG - chr3_1:89439862-89439881 None:intergenic 35.0%
!! AAGCTTTTTCTTGTCGATGT+TGG + chr3_1:89440090-89440109 Msa0385740:intron 35.0%
ATTGAGTTATTTGTCGGTGA+CGG + chr3_1:89440140-89440159 Msa0385740:intron 35.0%
CGGTACAATTGTAGAAACTT+AGG + chr3_1:89440160-89440179 Msa0385740:intron 35.0%
! TGTCATTTAAGAATACCTCG+TGG - chr3_1:89440203-89440222 None:intergenic 35.0%
TGACAACAACTTTGACTCTA+TGG + chr3_1:89440256-89440275 Msa0385740:intron 35.0%
CTCTAGTACATAAGACTAGA+AGG + chr3_1:89440453-89440472 Msa0385740:intron 35.0%
!! TAGAAGTCTCTAGGATACTA+GGG - chr3_1:89440542-89440561 None:intergenic 35.0%
!! ATAGAAGTCTCTAGGATACT+AGG - chr3_1:89440543-89440562 None:intergenic 35.0%
! AACAAGAAAATCTTGACTCG+AGG - chr3_1:89440676-89440695 None:intergenic 35.0%
!! TATTCTGAAATCTTGACTCG+AGG - chr3_1:89440702-89440721 None:intergenic 35.0%
! AGAACAGAGATGAGATTTTG+TGG - chr3_1:89440950-89440969 None:intergenic 35.0%
GATTAGAGATCTAGAGATCT+AGG + chr3_1:89441030-89441049 Msa0385740:intron 35.0%
TTGGAACATAGTTGTCAAAG+CGG - chr3_1:89441267-89441286 None:intergenic 35.0%
AAAGCGGAATTCAATCTACT+TGG - chr3_1:89441391-89441410 None:intergenic 35.0%
GATACTTGTCACATTCATCT+TGG - chr3_1:89441526-89441545 None:intergenic 35.0%
TGAATGTGACAAGTATCCAT+TGG + chr3_1:89441529-89441548 Msa0385740:intron 35.0%
ATGGTGTGATGTTATTCCAA+TGG - chr3_1:89441548-89441567 None:intergenic 35.0%
TGAATATGGTGAATCTTTGG+AGG - chr3_1:89441825-89441844 None:intergenic 35.0%
TGGTGAATATGGTGAATCTT+TGG - chr3_1:89441828-89441847 None:intergenic 35.0%
AAAGATTCACCATATTCACC+AGG + chr3_1:89441827-89441846 Msa0385740:intron 35.0%
! TGTGAAGTGTTTGAAGAAGA+GGG - chr3_1:89441956-89441975 None:intergenic 35.0%
! TTGTGAAGTGTTTGAAGAAG+AGG - chr3_1:89441957-89441976 None:intergenic 35.0%
TAGTATTCACCATCGTCAAT+GGG - chr3_1:89442087-89442106 None:intergenic 35.0%
ATAGTATTCACCATCGTCAA+TGG - chr3_1:89442088-89442107 None:intergenic 35.0%
CTAAACGTTTCATGTGTCAA+GGG - chr3_1:89442144-89442163 None:intergenic 35.0%
TCTCTTTGATTGTGTTACGT+TGG + chr3_1:89442179-89442198 Msa0385740:intron 35.0%
CTCTTTGATTGTGTTACGTT+GGG + chr3_1:89442180-89442199 Msa0385740:intron 35.0%
TCTTTGATTGTGTTACGTTG+GGG + chr3_1:89442181-89442200 Msa0385740:intron 35.0%
!! AGGAAATAGGTTGATGGATT+AGG + chr3_1:89442212-89442231 Msa0385740:intron 35.0%
!! GGAAATAGGTTGATGGATTA+GGG + chr3_1:89442213-89442232 Msa0385740:intron 35.0%
!! GAAATAGGTTGATGGATTAG+GGG + chr3_1:89442214-89442233 Msa0385740:intron 35.0%
!! GATTAGGGGTTTTTGAGAAT+CGG + chr3_1:89442228-89442247 Msa0385740:intron 35.0%
!! AGAATCGGTATGATTTTTGG+TGG + chr3_1:89442243-89442262 Msa0385740:intron 35.0%
!!! GAATCGGTATGATTTTTGGT+GGG + chr3_1:89442244-89442263 Msa0385740:intron 35.0%
!!! AATCGGTATGATTTTTGGTG+GGG + chr3_1:89442245-89442264 Msa0385740:intron 35.0%
! TTGGCTTGATAATAATGAGG+AGG + chr3_1:89442316-89442335 Msa0385740:intron 35.0%
ATGAGGAGGTAAATTCTTAC+GGG + chr3_1:89442330-89442349 Msa0385740:intron 35.0%
AAAAAGCAAGATCAAGACGT+GGG - chr3_1:89442377-89442396 None:intergenic 35.0%
AGTATAAGGAGGTTCCATAA+GGG - chr3_1:89442487-89442506 None:intergenic 35.0%
AACCAATCCAGAAAATCATC+TGG + chr3_1:89442530-89442549 Msa0385740:intron 35.0%
! AACCAGATGATTTTCTGGAT+TGG - chr3_1:89442535-89442554 None:intergenic 35.0%
! TCTACAACCAGATGATTTTC+TGG - chr3_1:89442540-89442559 None:intergenic 35.0%
TGTAGATTCCCTTCAAAATC+TGG + chr3_1:89442554-89442573 Msa0385740:intron 35.0%
! GTAGACATTCCAGATTTTGA+AGG - chr3_1:89442566-89442585 None:intergenic 35.0%
TGAAAGAAGTTTGCAAGAGA+TGG - chr3_1:89442756-89442775 None:intergenic 35.0%
! CTTCTTTCATTTTGTCTTCG+AGG + chr3_1:89442767-89442786 Msa0385740:intron 35.0%
!!! TTTTTTTTGGGTGAAGATCG+TGG + chr3_1:89442819-89442838 Msa0385740:intron 35.0%
AGTTTGAGCGAAGAAATCAA+CGG - chr3_1:89442948-89442967 None:intergenic 35.0%
TCGCTCAAACTCAAACAAAA+TGG + chr3_1:89442957-89442976 Msa0385740:intron 35.0%
CTCAAACTCAAACAAAATGG+AGG + chr3_1:89442960-89442979 Msa0385740:intron 35.0%
! TGTTAGTTTCGCGAACAAAA+TGG + chr3_1:89442983-89443002 Msa0385740:intron 35.0%
CTTTGTGAAACTTCACTTTG+CGG - chr3_1:89443009-89443028 None:intergenic 35.0%
CTCTAGTACATAAGACTAGA+AGG + chr3_1:89440453-89440472 Msa0385740:intron 35.0%
!! TACGATTTTGATGTTCGAGA+GGG - chr3_1:89443534-89443553 None:intergenic 35.0%
!! TTACGATTTTGATGTTCGAG+AGG - chr3_1:89443535-89443554 None:intergenic 35.0%
AATAACTACACTCAAATCCC+TGG + chr3_1:89443597-89443616 Msa0385740:intron 35.0%
TGAGAGAATTCATGGTGTTT+GGG - chr3_1:89443656-89443675 None:intergenic 35.0%
CAACGTTAAGGGAGATATAT+AGG - chr3_1:89443774-89443793 None:intergenic 35.0%
!! TTTCTTCTTCTTGCTTTTCC+TGG + chr3_1:89443818-89443837 Msa0385740:intron 35.0%
!!! TTTTGTTCGTTTTGCTGTTG+AGG + chr3_1:89443893-89443912 Msa0385740:intron 35.0%
!!! TTTGTTCGTTTTGCTGTTGA+GGG + chr3_1:89443894-89443913 Msa0385740:intron 35.0%
! TTGAGGGTTTTGCAGAATTT+TGG + chr3_1:89443910-89443929 Msa0385740:intron 35.0%
! TGAGGGTTTTGCAGAATTTT+GGG + chr3_1:89443911-89443930 Msa0385740:intron 35.0%
! TGTTTACGGCAATTGATTTC+AGG + chr3_1:89444397-89444416 Msa0385740:intron 35.0%
TCTTATAAAAACTTGTGGCG+TGG + chr3_1:89444429-89444448 Msa0385740:intron 35.0%
! TTTACTCTTTGTTGTGTTGC+AGG + chr3_1:89444521-89444540 Msa0385740:intron 35.0%
! TTACTCTTTGTTGTGTTGCA+GGG + chr3_1:89444522-89444541 Msa0385740:intron 35.0%
ATGTGGTGGTCTTTGTAATA+TGG + chr3_1:89444548-89444567 Msa0385740:CDS 35.0%
TGTGGTGGTCTTTGTAATAT+GGG + chr3_1:89444549-89444568 Msa0385740:CDS 35.0%
CTTCCATTGTCAATGTAAAG+TGG + chr3_1:89444733-89444752 Msa0385740:exon 35.0%
TCCAATTCCAGTAAAAAAGG+CGG - chr3_1:89444805-89444824 None:intergenic 35.0%
CGATCCAATTCCAGTAAAAA+AGG - chr3_1:89444808-89444827 None:intergenic 35.0%
! TTTTTACTGGAATTGGATCG+CGG + chr3_1:89444808-89444827 Msa0385740:three_prime_UTR 35.0%
TACATCCAAACAAGCTTATC+CGG + chr3_1:89444937-89444956 Msa0385740:three_prime_UTR 35.0%
AGATATATGTGACAAGAACC+TGG - chr3_1:89444988-89445007 None:intergenic 35.0%
TAGCTGTGATATTATGCAGA+AGG + chr3_1:89445171-89445190 Msa0385740:three_prime_UTR 35.0%
! ACTACTATGGATTGAAGAAG+TGG + chr3_1:89445503-89445522 Msa0385740:three_prime_UTR 35.0%
! CAAAAAAGCATAGCACAACT+TGG - chr3_1:89445624-89445643 Msa0385750:CDS 35.0%
!!! CAAGTTGTGCTATGCTTTTT+TGG + chr3_1:89445622-89445641 Msa0385740:three_prime_UTR 35.0%
AATCAGTATCCACATGAAAC+AGG + chr3_1:89445651-89445670 Msa0385740:three_prime_UTR 35.0%
ATCAGTATCCACATGAAACA+GGG + chr3_1:89445652-89445671 Msa0385740:three_prime_UTR 35.0%
CAGGGATAAGCTAATGTTAT+TGG + chr3_1:89445670-89445689 Msa0385740:three_prime_UTR 35.0%
CTACAGAAATGAAAAAGGTC+AGG + chr3_1:89445743-89445762 Msa0385740:three_prime_UTR 35.0%
AATTCAGATACACCAGCAAA+TGG - chr3_1:89445822-89445841 Msa0385750:CDS 35.0%
GTTATCATGGTATTGCTCCT+GGG - chr3_1:89439203-89439222 None:intergenic 40.0%
AAGATTCGATCGCGTTATCA+TGG - chr3_1:89439216-89439235 None:intergenic 40.0%
AGATTCGATCCAAACATGAC+TGG + chr3_1:89439258-89439277 Msa0385740:CDS 40.0%
GATTCGATCCAAACATGACT+GGG + chr3_1:89439259-89439278 Msa0385740:CDS 40.0%
GGAAGAAGTAGAAGAGAAGA+AGG - chr3_1:89439294-89439313 None:intergenic 40.0%
!! CTTGGAAGTGTTGGTGATAT+TGG - chr3_1:89439315-89439334 None:intergenic 40.0%
! ATTGGCATACTTGGAAGTGT+TGG - chr3_1:89439324-89439343 None:intergenic 40.0%
CATTTAAGAATACCTCGTGG+AGG - chr3_1:89440200-89440219 None:intergenic 40.0%
AACTTTGACTCTATGGCTCA+GGG + chr3_1:89440263-89440282 Msa0385740:intron 40.0%
CTTGACTATCCCAAAACACT+AGG + chr3_1:89440347-89440366 Msa0385740:intron 40.0%
TCATTCTCTATCATTCTCCC+CGG + chr3_1:89440634-89440653 Msa0385740:intron 40.0%
AACAGAGCCTTGGAATACTT+TGG - chr3_1:89440740-89440759 None:intergenic 40.0%
GCTTTGACAACTATGTTCCA+AGG + chr3_1:89441266-89441285 Msa0385740:intron 40.0%
!! GTTGGAACTGATTTTGTCCT+TGG - chr3_1:89441286-89441305 None:intergenic 40.0%
! ACCACTCAATGATGGAAAAG+CGG - chr3_1:89441407-89441426 None:intergenic 40.0%
CAAAACCTACACTTTCGTGA+AGG - chr3_1:89441458-89441477 None:intergenic 40.0%
!! CTTCACGAAAGTGTAGGTTT+TGG + chr3_1:89441456-89441475 Msa0385740:intron 40.0%
GATCGTCATGCATTATTCGA+GGG - chr3_1:89441487-89441506 None:intergenic 40.0%
TGATCGTCATGCATTATTCG+AGG - chr3_1:89441488-89441507 None:intergenic 40.0%
ATGGCTCGATAAGGATAATG+AGG - chr3_1:89441654-89441673 None:intergenic 40.0%
TAGTCTACAATGGCTCGATA+AGG - chr3_1:89441663-89441682 None:intergenic 40.0%
CATTGTAGACTACATGGATG+CGG + chr3_1:89441671-89441690 Msa0385740:intron 40.0%
ATTGTAGACTACATGGATGC+GGG + chr3_1:89441672-89441691 Msa0385740:intron 40.0%
GACATTACAAACCATGTCTC+TGG + chr3_1:89441772-89441791 Msa0385740:intron 40.0%
GACTATCTTCCTGGTGAATA+TGG - chr3_1:89441839-89441858 None:intergenic 40.0%
TATGACGAAGACTATCTTCC+TGG - chr3_1:89441848-89441867 None:intergenic 40.0%
TCATTTGAAGGAGAGTCGAT+GGG - chr3_1:89442019-89442038 None:intergenic 40.0%
ATCATTTGAAGGAGAGTCGA+TGG - chr3_1:89442020-89442039 None:intergenic 40.0%
AGTATTCACCATCGTCAATG+GGG - chr3_1:89442086-89442105 None:intergenic 40.0%
CCTAAACGTTTCATGTGTCA+AGG - chr3_1:89442145-89442164 None:intergenic 40.0%
CCTTGACACATGAAACGTTT+AGG + chr3_1:89442142-89442161 Msa0385740:intron 40.0%
TGGGGTCTAAATGAGGAAAT+AGG + chr3_1:89442199-89442218 Msa0385740:intron 40.0%
!!! ATCGGTATGATTTTTGGTGG+GGG + chr3_1:89442246-89442265 Msa0385740:intron 40.0%
GAAAAAGCAAGATCAAGACG+TGG - chr3_1:89442378-89442397 None:intergenic 40.0%
TGAAGCATGTTTCTTCAGCT+TGG + chr3_1:89442438-89442457 Msa0385740:intron 40.0%
GAGTATAAGGAGGTTCCATA+AGG - chr3_1:89442488-89442507 None:intergenic 40.0%
AGATTCGAAGATGATGTCTC+CGG - chr3_1:89442656-89442675 None:intergenic 40.0%
! TCCTTTGTTGTGCTTCCAAA+AGG + chr3_1:89442675-89442694 Msa0385740:intron 40.0%
! CCTTTGTTGTGCTTCCAAAA+GGG + chr3_1:89442676-89442695 Msa0385740:intron 40.0%
TGCAAGAGATGGAAGAAATG+AGG - chr3_1:89442745-89442764 None:intergenic 40.0%
! CTTTCATTTTGTCTTCGAGG+TGG + chr3_1:89442770-89442789 Msa0385740:intron 40.0%
CGCAAAGTGAAGTTTCACAA+AGG + chr3_1:89443007-89443026 Msa0385740:intron 40.0%
!!! AGTGAGTTTTCAAGTGAGCA+AGG - chr3_1:89443038-89443057 None:intergenic 40.0%
CTTGACTATCCCAAAACACT+AGG + chr3_1:89440347-89440366 Msa0385740:intron 40.0%
GTTTGGGAGAGATCCATATA+GGG - chr3_1:89443640-89443659 None:intergenic 40.0%
TGTTTGGGAGAGATCCATAT+AGG - chr3_1:89443641-89443660 None:intergenic 40.0%
GTGAGAGAATTCATGGTGTT+TGG - chr3_1:89443657-89443676 None:intergenic 40.0%
CTTTCCAAATTCCACACCTA+GGG - chr3_1:89443855-89443874 None:intergenic 40.0%
ACTTTCCAAATTCCACACCT+AGG - chr3_1:89443856-89443875 None:intergenic 40.0%
TAGGTGTGGAATTTGGAAAG+TGG + chr3_1:89443855-89443874 Msa0385740:intron 40.0%
TCTCTCTTATCCATACTGCT+GGG - chr3_1:89444085-89444104 None:intergenic 40.0%
TTCTCTCTTATCCATACTGC+TGG - chr3_1:89444086-89444105 None:intergenic 40.0%
TAAGAGAGAATGTGAGTGTG+AGG + chr3_1:89444096-89444115 Msa0385740:intron 40.0%
AGTGTGAGGATGAGTGAAAT+TGG + chr3_1:89444110-89444129 Msa0385740:intron 40.0%
ATAGTGTTAGATAGGAAGGG+AGG + chr3_1:89444155-89444174 Msa0385740:intron 40.0%
AATTACACTCACTTCCCTTG+AGG - chr3_1:89444262-89444281 None:intergenic 40.0%
!!! ACCGCCTTTTTTACTGGAAT+TGG + chr3_1:89444801-89444820 Msa0385740:three_prime_UTR 40.0%
TTCAATGACGAATGAGAAGC+TGG - chr3_1:89444858-89444877 None:intergenic 40.0%
TTCTCTAGTCAACTTGCGAT+AGG - chr3_1:89444902-89444921 None:intergenic 40.0%
GTGAAAGTTCGAATACTACC+AGG + chr3_1:89445109-89445128 Msa0385740:three_prime_UTR 40.0%
TGTAAAACCCTAGCAAATGC+TGG + chr3_1:89445372-89445391 Msa0385740:three_prime_UTR 40.0%
! TGATTTGCCAGCATTTGCTA+GGG - chr3_1:89445382-89445401 None:intergenic 40.0%
!! TTGATTTGCCAGCATTTGCT+AGG - chr3_1:89445383-89445402 None:intergenic 40.0%
GCACAACTTGGTATCTAAAC+TGG - chr3_1:89445612-89445631 Msa0385750:CDS 40.0%
TAGCTTATCCCTGTTTCATG+TGG - chr3_1:89445663-89445682 Msa0385750:CDS 40.0%
GTTACCATTCTTGCCAAGTT+TGG - chr3_1:89445722-89445741 Msa0385750:CDS 40.0%
ATAGCCTTCAGAAGTCTCTT+CGG - chr3_1:89445772-89445791 Msa0385750:CDS 40.0%
GTTCGTGCTTATAGAGAGAG+AGG + chr3_1:89439176-89439195 Msa0385740:five_prime_UTR 45.0%
CGTTATCATGGTATTGCTCC+TGG - chr3_1:89439204-89439223 None:intergenic 45.0%
AGAAGAGAAGAAGGAGACAG+AGG - chr3_1:89439285-89439304 None:intergenic 45.0%
TTGTAGGCAGCTTGGTTGTT+TGG + chr3_1:89439647-89439666 Msa0385740:intron 45.0%
GGTTGAACTCATATGGGGTA+AGG + chr3_1:89440035-89440054 Msa0385740:intron 45.0%
TGAACTCATATGGGGTAAGG+AGG + chr3_1:89440038-89440057 Msa0385740:intron 45.0%
GAACTCATATGGGGTAAGGA+GGG + chr3_1:89440039-89440058 Msa0385740:intron 45.0%
AAATTACACTCACCTCCACG+AGG + chr3_1:89440185-89440204 Msa0385740:intron 45.0%
CAACTTTGACTCTATGGCTC+AGG + chr3_1:89440262-89440281 Msa0385740:intron 45.0%
GACTATCCCAAAACACTAGG+TGG + chr3_1:89440350-89440369 Msa0385740:intron 45.0%
CATTCTCTATCATTCTCCCC+GGG + chr3_1:89440635-89440654 Msa0385740:intron 45.0%
! GCAGAGTCCAAAGTATTCCA+AGG + chr3_1:89440730-89440749 Msa0385740:intron 45.0%
CAAGGCTCTGTTGTCAATAG+CGG + chr3_1:89440748-89440767 Msa0385740:intron 45.0%
TTGTCAATAGCGGTCTAACG+CGG + chr3_1:89440758-89440777 Msa0385740:intron 45.0%
AGGCAAAAGCGGAACAAAAG+CGG + chr3_1:89440836-89440855 Msa0385740:intron 45.0%
TAGTTGTCAAAGCGGAAACG+CGG - chr3_1:89441259-89441278 None:intergenic 45.0%
! TCAGTTCCAACATTTTCCCG+AGG + chr3_1:89441295-89441314 Msa0385740:intron 45.0%
ACTCGCAAAGGAACCATTCA+AGG - chr3_1:89441362-89441381 None:intergenic 45.0%
ACTTGGACTTTCACTCGCAA+AGG - chr3_1:89441374-89441393 None:intergenic 45.0%
!! TCCGCTTTTCCATCATTGAG+TGG + chr3_1:89441403-89441422 Msa0385740:intron 45.0%
GCACTTCTACCACTCAATGA+TGG - chr3_1:89441415-89441434 None:intergenic 45.0%
! CACATCCTTCACGAAAGTGT+AGG + chr3_1:89441450-89441469 Msa0385740:intron 45.0%
GCATGACGATCATATTGCCA+AGG + chr3_1:89441496-89441515 Msa0385740:intron 45.0%
CTTGTCACATTCATCTTGGG+AGG - chr3_1:89441522-89441541 None:intergenic 45.0%
TCGAGCCATTGTAGACTACA+TGG + chr3_1:89441665-89441684 Msa0385740:intron 45.0%
CGCATCCATGTAGTCTACAA+TGG - chr3_1:89441673-89441692 None:intergenic 45.0%
AACAACAATCGCCAGAGACA+TGG - chr3_1:89441786-89441805 None:intergenic 45.0%
GTTTATCTCCCCATTGACGA+TGG + chr3_1:89442075-89442094 Msa0385740:intron 45.0%
CGTTTCATGTGTCAAGGGTA+TGG - chr3_1:89442139-89442158 None:intergenic 45.0%
GTTACGTTGGGGTCTAAATG+AGG + chr3_1:89442192-89442211 Msa0385740:intron 45.0%
! TTTTGGTGGGGGAAAGAAGT+TGG + chr3_1:89442257-89442276 Msa0385740:intron 45.0%
AGATGATGAAGAGTCCCTAC+CGG + chr3_1:89442634-89442653 Msa0385740:intron 45.0%
!! CCCTTTTGGAAGCACAACAA+AGG - chr3_1:89442679-89442698 None:intergenic 45.0%
! TGCTTCCAAAAGGGCTTGTT+GGG + chr3_1:89442685-89442704 Msa0385740:intron 45.0%
!! TCGAGGTGGCATTTTGACAA+TGG + chr3_1:89442784-89442803 Msa0385740:intron 45.0%
!!! TTTTTGGGTGAAGATCGTGG+CGG + chr3_1:89442822-89442841 Msa0385740:intron 45.0%
! GTGTTAGCTTCGCGAACAAA+TGG + chr3_1:89442866-89442885 Msa0385740:intron 45.0%
ACCAGCTCTTATGCCAAATC+TGG + chr3_1:89443101-89443120 Msa0385740:intron 45.0%
! TCTTATGCCAAATCTGGCTC+AGG + chr3_1:89443107-89443126 Msa0385740:intron 45.0%
! CTTATGCCAAATCTGGCTCA+GGG + chr3_1:89443108-89443127 Msa0385740:intron 45.0%
! TTTTGTCCCTGAGCCAGATT+TGG - chr3_1:89443117-89443136 None:intergenic 45.0%
! AAATCTGGCTCAGGGACAAA+AGG + chr3_1:89443116-89443135 Msa0385740:intron 45.0%
GACTATCCCAAAACACTAGG+TGG + chr3_1:89440350-89440369 Msa0385740:intron 45.0%
!!! AGTTTTGAGTTCCCTAGGTG+TGG + chr3_1:89443841-89443860 Msa0385740:intron 45.0%
AGTTCCCTAGGTGTGGAATT+TGG + chr3_1:89443848-89443867 Msa0385740:intron 45.0%
GTAAAGATTGCCCAGCAGTA+TGG + chr3_1:89444072-89444091 Msa0385740:intron 45.0%
GTGAGGATGAGTGAAATTGG+AGG + chr3_1:89444113-89444132 Msa0385740:intron 45.0%
!! CTTTGGGTTGCATGATACGA+TGG + chr3_1:89444482-89444501 Msa0385740:intron 45.0%
CAAAGCAAGTAAGACTGGCA+AGG + chr3_1:89444689-89444708 Msa0385740:CDS 45.0%
TGGCAAGGAAGAAGAAACGA+AGG + chr3_1:89444704-89444723 Msa0385740:CDS 45.0%
AAAAAAGGCGGTGAGAGAGA+AGG - chr3_1:89444793-89444812 None:intergenic 45.0%
!!! TCTCTCACCGCCTTTTTTAC+TGG + chr3_1:89444795-89444814 Msa0385740:three_prime_UTR 45.0%
TCCAAACAAGCTTATCCGGT+TGG + chr3_1:89444941-89444960 Msa0385740:three_prime_UTR 45.0%
! TCCAACCGGATAAGCTTGTT+TGG - chr3_1:89444945-89444964 None:intergenic 45.0%
AAACAAGCTTATCCGGTTGG+AGG + chr3_1:89444944-89444963 Msa0385740:three_prime_UTR 45.0%
TAAGTTACACCACCTCCAAC+CGG - chr3_1:89444959-89444978 None:intergenic 45.0%
TGGTGTAACTTAGTTGTGCC+AGG + chr3_1:89444967-89444986 Msa0385740:three_prime_UTR 45.0%
TCTTTACACAAGAGTTCGCC+TGG - chr3_1:89445130-89445149 None:intergenic 45.0%
TGCTGGCAAATCAATGTCTG+CGG + chr3_1:89445389-89445408 Msa0385740:three_prime_UTR 45.0%
!! ATTTGGGGCATTGTAGCACT+GGG - chr3_1:89445538-89445557 Msa0385750:CDS 45.0%
!! AATTTGGGGCATTGTAGCAC+TGG - chr3_1:89445539-89445558 Msa0385750:CDS 45.0%
TGGTATCTAAACTGGACGCT+AGG - chr3_1:89445604-89445623 Msa0385750:CDS 45.0%
AATGGAACAGACCTTGTCCA+AGG - chr3_1:89445804-89445823 Msa0385750:CDS 45.0%
ACAAGGTCTGTTCCATTTGC+TGG + chr3_1:89445807-89445826 Msa0385740:three_prime_UTR 45.0%
!! AATAAAAAAATAAAATACAT+GGG - chr3_1:89439470-89439489 None:intergenic 5.0%
!! AAATAAAAAAATAAAATACA+TGG - chr3_1:89439471-89439490 None:intergenic 5.0%
CTTATAGAGAGAGAGGACCC+AGG + chr3_1:89439183-89439202 Msa0385740:five_prime_UTR 50.0%
GGCAGCTTGGTTGTTTGGAT+TGG + chr3_1:89439652-89439671 Msa0385740:intron 50.0%
ATATGGGGTAAGGAGGGTGA+AGG + chr3_1:89440045-89440064 Msa0385740:intron 50.0%
! GGCTCACCACCTAGTGTTTT+GGG - chr3_1:89440359-89440378 None:intergenic 50.0%
! AGGCTCACCACCTAGTGTTT+TGG - chr3_1:89440360-89440379 None:intergenic 50.0%
CGCTATTGACAACAGAGCCT+TGG - chr3_1:89440750-89440769 None:intergenic 50.0%
! CTTTTGCCTAACACGCGACT+CGG - chr3_1:89440825-89440844 None:intergenic 50.0%
AGTCGCGTGTTAGGCAAAAG+CGG + chr3_1:89440825-89440844 Msa0385740:intron 50.0%
GGCAAAAGCGGAACAAAAGC+GGG + chr3_1:89440837-89440856 Msa0385740:intron 50.0%
! GTTCCAACATTTTCCCGAGG+TGG + chr3_1:89441298-89441317 Msa0385740:intron 50.0%
AAGCCACCTCGGGAAAATGT+TGG - chr3_1:89441304-89441323 None:intergenic 50.0%
! ACATTTTCCCGAGGTGGCTT+AGG + chr3_1:89441304-89441323 Msa0385740:intron 50.0%
TCCAATTCCTAAGCCACCTC+GGG - chr3_1:89441314-89441333 None:intergenic 50.0%
GTCCAATTCCTAAGCCACCT+CGG - chr3_1:89441315-89441334 None:intergenic 50.0%
ACATTCATCTTGGGAGGCCT+TGG - chr3_1:89441516-89441535 None:intergenic 50.0%
CGAAGATGATGTCTCCGGTA+GGG - chr3_1:89442651-89442670 None:intergenic 50.0%
TCGAAGATGATGTCTCCGGT+AGG - chr3_1:89442652-89442671 None:intergenic 50.0%
GTGCTTCCAAAAGGGCTTGT+TGG + chr3_1:89442684-89442703 Msa0385740:intron 50.0%
! CAATGCCCAACAAGCCCTTT+TGG - chr3_1:89442693-89442712 None:intergenic 50.0%
!! GTGCGTGGTTGTTTTGTCGA+TGG + chr3_1:89442844-89442863 Msa0385740:intron 50.0%
GCCAGATTTGGCATAAGAGC+TGG - chr3_1:89443105-89443124 None:intergenic 50.0%
TGGCTCAGGGACAAAAGGTA+AGG + chr3_1:89443121-89443140 Msa0385740:intron 50.0%
! GGCTCACCACCTAGTGTTTT+GGG - chr3_1:89440359-89440378 None:intergenic 50.0%
! AGGCTCACCACCTAGTGTTT+TGG - chr3_1:89440360-89440379 None:intergenic 50.0%
CGAGAGGGAAGAGATTGAAG+AGG - chr3_1:89443519-89443538 None:intergenic 50.0%
CCTAGGGAACTCAAAACTCC+AGG - chr3_1:89443839-89443858 None:intergenic 50.0%
!!! CCTGGAGTTTTGAGTTCCCT+AGG + chr3_1:89443836-89443855 Msa0385740:intron 50.0%
TGCTGGGCAATCTTTACTCG+TGG - chr3_1:89444069-89444088 None:intergenic 50.0%
! CTCTTTGTTGTGTTGCAGGG+TGG + chr3_1:89444525-89444544 Msa0385740:intron 50.0%
GTAGAGCAACTCCTCCAATG+AGG + chr3_1:89445692-89445711 Msa0385740:three_prime_UTR 50.0%
CCATTCTTGCCAAGTTTGGC+AGG - chr3_1:89445718-89445737 Msa0385750:CDS 50.0%
CCTGCCAAACTTGGCAAGAA+TGG + chr3_1:89445715-89445734 Msa0385740:three_prime_UTR 50.0%
AAGGCTATTCGAAGCCACCT+TGG + chr3_1:89445784-89445803 Msa0385740:three_prime_UTR 50.0%
ATTCGAAGCCACCTTGGACA+AGG + chr3_1:89445790-89445809 Msa0385740:three_prime_UTR 50.0%
GACAGAGGCCCAGTCATGTT+TGG - chr3_1:89439270-89439289 None:intergenic 55.0%
CTCTATCATTCTCCCCGGGT+TGG + chr3_1:89440639-89440658 Msa0385740:intron 55.0%
AGGACGAGTCTCTTCCAACC+CGG - chr3_1:89440656-89440675 None:intergenic 55.0%
! TACCGCGCCGCGTCAATTTT+TGG + chr3_1:89441218-89441237 Msa0385740:intron 55.0%
! ACCGCGCCGCGTCAATTTTT+GGG + chr3_1:89441219-89441238 Msa0385740:intron 55.0%
GGCCACCCCAAAAATTGACG+CGG - chr3_1:89441228-89441247 None:intergenic 55.0%
TCCCGAGGTGGCTTAGGAAT+TGG + chr3_1:89441310-89441329 Msa0385740:intron 55.0%
GTTGTGTTGCAGGGTGGATG+TGG + chr3_1:89444531-89444550 Msa0385740:intron 55.0%
CAAGCTTATCCGGTTGGAGG+TGG + chr3_1:89444947-89444966 Msa0385740:three_prime_UTR 55.0%
ACTGGACGCTAGGAGCAGTT+GGG - chr3_1:89445594-89445613 Msa0385750:CDS 55.0%
AACTGGACGCTAGGAGCAGT+TGG - chr3_1:89445595-89445614 Msa0385750:CDS 55.0%
AGTTTGGCAGGCCTCATTGG+AGG - chr3_1:89445706-89445725 Msa0385750:CDS 55.0%
CCAAGTTTGGCAGGCCTCAT+TGG - chr3_1:89445709-89445728 Msa0385750:CDS 55.0%
CCAATGAGGCCTGCCAAACT+TGG + chr3_1:89445706-89445725 Msa0385740:three_prime_UTR 55.0%
GCAGCCGAAGAGACTTCTGA+AGG + chr3_1:89445765-89445784 Msa0385740:three_prime_UTR 55.0%
GGAACAGACCTTGTCCAAGG+TGG - chr3_1:89445801-89445820 Msa0385750:CDS 55.0%
GACGAGTCTCTTCCAACCCG+GGG - chr3_1:89440654-89440673 None:intergenic 60.0%
GGACGAGTCTCTTCCAACCC+GGG - chr3_1:89440655-89440674 None:intergenic 60.0%
GGAACAAAAGCGGGTCAGCG+CGG + chr3_1:89440846-89440865 Msa0385740:intron 60.0%
GAACAAAAGCGGGTCAGCGC+GGG + chr3_1:89440847-89440866 Msa0385740:intron 60.0%
GGGCAAAAAGCGGGTCAACG+CGG + chr3_1:89440867-89440886 Msa0385740:intron 60.0%
GGCAAAAAGCGGGTCAACGC+GGG + chr3_1:89440868-89440887 Msa0385740:intron 60.0%
GGGTCAACGCGGGCAAAAAG+CGG + chr3_1:89440899-89440918 Msa0385740:intron 60.0%
GGTCAACGCGGGCAAAAAGC+GGG + chr3_1:89440900-89440919 Msa0385740:intron 60.0%
! GCGGGCGCTTTTACATGACG+CGG - chr3_1:89441186-89441205 None:intergenic 60.0%
!! ATGTAAAAGCGCCCGCGTCG+CGG + chr3_1:89441190-89441209 Msa0385740:intron 60.0%
AATTGACGCGGCGCGGTAAG+CGG - chr3_1:89441216-89441235 None:intergenic 60.0%
CCCCAAAAATTGACGCGGCG+CGG - chr3_1:89441223-89441242 None:intergenic 60.0%
! CCGCGCCGCGTCAATTTTTG+GGG + chr3_1:89441220-89441239 Msa0385740:intron 60.0%
!! CGCCGCGTCAATTTTTGGGG+TGG + chr3_1:89441223-89441242 Msa0385740:intron 60.0%
GGATGCGGGTGCTCCTTTGT+CGG + chr3_1:89441686-89441705 Msa0385740:intron 60.0%
GTGTTGCAGGGTGGATGTGG+TGG + chr3_1:89444534-89444553 Msa0385740:intron 60.0%
ACGCGACCGAGTCGCGTGTT+AGG + chr3_1:89440816-89440835 Msa0385740:intron 65.0%
GGGTCAGCGCGGGCAAAAAG+CGG + chr3_1:89440857-89440876 Msa0385740:intron 65.0%
GGTCAGCGCGGGCAAAAAGC+GGG + chr3_1:89440858-89440877 Msa0385740:intron 65.0%
AGCGGGTCAACGCGGGCAAA+AGG + chr3_1:89440875-89440894 Msa0385740:intron 65.0%
GGGTCAACGCGGGCAAAAGG+CGG + chr3_1:89440878-89440897 Msa0385740:intron 65.0%
GGTCAACGCGGGCAAAAGGC+GGG + chr3_1:89440879-89440898 Msa0385740:intron 65.0%
GGGCAAAAGGCGGGTCAACG+CGG + chr3_1:89440888-89440907 Msa0385740:intron 65.0%
GGCAAAAGGCGGGTCAACGC+GGG + chr3_1:89440889-89440908 Msa0385740:intron 65.0%
GTCAAAGCGGAAACGCGGCG+CGG - chr3_1:89441254-89441273 None:intergenic 65.0%
GTGAAGATCGTGGCGGTGCG+TGG + chr3_1:89442829-89442848 Msa0385740:intron 65.0%
GGTCTAACGCGGCGCGATCG+CGG + chr3_1:89440769-89440788 Msa0385740:intron 70.0%
CGGTCGCGTTCTGACGCGCT+AGG - chr3_1:89440805-89440824 None:intergenic 70.0%
! GCGGTAAGCGGCCGCGACGC+GGG - chr3_1:89441204-89441223 None:intergenic 80.0%
! CGCGGTAAGCGGCCGCGACG+CGG - chr3_1:89441205-89441224 None:intergenic 80.0%
! AGCGGAAACGCGGCGCGGCG+CGG - chr3_1:89441249-89441268 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 89439091 89445876 89439091 ID=Msa0385740;Name=Msa0385740
chr3_1 mRNA 89439091 89445876 89439091 ID=Msa0385740-mRNA-1;Parent=Msa0385740;Name=Msa0385740-mRNA-1;_AED=0.00;_eAED=0.00;_QI=124|1|1|1|1|1|2|1126|108
chr3_1 exon 89439091 89439333 89439091 ID=Msa0385740-mRNA-1:exon:24333;Parent=Msa0385740-mRNA-1
chr3_1 exon 89444543 89445876 89444543 ID=Msa0385740-mRNA-1:exon:24334;Parent=Msa0385740-mRNA-1
chr3_1 five_prime_UTR 89439091 89439214 89439091 ID=Msa0385740-mRNA-1:five_prime_utr;Parent=Msa0385740-mRNA-1
chr3_1 CDS 89439215 89439333 89439215 ID=Msa0385740-mRNA-1:cds;Parent=Msa0385740-mRNA-1
chr3_1 CDS 89444543 89444750 89444543 ID=Msa0385740-mRNA-1:cds;Parent=Msa0385740-mRNA-1
chr3_1 three_prime_UTR 89444751 89445876 89444751 ID=Msa0385740-mRNA-1:three_prime_utr;Parent=Msa0385740-mRNA-1
Gene Sequence

>Msa0385740

ATGATAACGCGATCGAATCTTGCAGAACAGCTGCGAGATTATCAGATTCGATCCAAACATGACTGGGCCTCTGTCTCCTTCTTCTCTTCTACTTCTTCCAATATCACCAACACTTCCAAGGTGGATGTGGTGGTCTTTGTAATATGGGAACTTGTTATATTAGCTTTCTTGGTTTTTTCAGTTGTTTCTTTGTACTTTAAGCACATCCAGCTTGCTTTTATATTAGTCTGCATCACAGTGCTTTTGCTTTTATGCATGAAAATTACAAAGCAAGTAAGACTGGCAAGGAAGAAGAAACGAAGGATGCTTCTTCCATTGTCAATGTAA
Protein sequence

>Msa0385740

MITRSNLAEQLRDYQIRSKHDWASVSFFSSTSSNITNTSKVDVVVFVIWELVILAFLVFSVVSLYFKHIQLAFILVCITVLLLLCMKITKQVRLARKKKRRMLLPLSM*