AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1131560


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1131560 MtrunA17_Chr4g0073971 96.610 236 8 0 6 241 332 567 9.30e-166 469
Msa1131560 MtrunA17_Chr2g0305841 84.322 236 37 0 6 241 348 583 8.76e-148 424
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1131560 AT2G24200.3 85.593 236 34 0 6 241 248 483 1.07e-149 426
Msa1131560 AT2G24200.2 85.593 236 34 0 6 241 284 519 3.32e-149 426
Msa1131560 AT2G24200.1 85.593 236 34 0 6 241 284 519 3.32e-149 426
Msa1131560 AT4G30920.1 82.627 236 41 0 6 241 347 582 3.28e-143 413
Msa1131560 AT4G30910.1 78.390 236 51 0 6 241 346 581 3.93e-132 385
Msa1131560 AT4G30910.2 71.429 259 51 1 6 241 346 604 8.91e-127 372

Find 72 sgRNAs with CRISPR-Local

Find 231 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGAAATCTTCAAATATTAT+TGG 0.177832 7_3:-84111934 Msa1131560:three_prime_UTR
TAGATGCTTAACTGAATTAT+TGG 0.179256 7_3:+84111741 None:intergenic
ATTAAGCACGCACCTGTTTC+AGG 0.219303 7_3:+84112396 None:intergenic
ATTGATTTGGCAACCTTAAC+TGG 0.220073 7_3:-84112874 Msa1131560:CDS
TGAACTCATGAAATTTGATA+TGG 0.264305 7_3:-84114950 Msa1131560:CDS
TCTTCTTCAGATTATTGATT+TGG 0.273791 7_3:-84112887 Msa1131560:intron
TCCCAGTAGCTTTCCTCTAT+TGG 0.292216 7_3:+84112494 None:intergenic
TGAACTGGTAAAAGAAGTTT+TGG 0.297980 7_3:-84112555 Msa1131560:CDS
GCTCTTGGGCCCTCAATTGC+AGG 0.355562 7_3:-84112838 Msa1131560:intron
GAAATCAGGAGTGGCTGATA+TGG 0.370259 7_3:-84112465 Msa1131560:CDS
AGGTGAGTGGGGAGAAACTA+TGG 0.382649 7_3:-84112523 Msa1131560:CDS
GGGGCATGTGTAGTTGCTCT+TGG 0.391607 7_3:-84112853 Msa1131560:CDS
CGTTGCTACTCTAGTGGAAT+GGG 0.404049 7_3:-84111984 Msa1131560:CDS
TTGGTCAAATCAAACCTCTT+GGG 0.406712 7_3:-84114891 Msa1131560:CDS
TACTGGGAATCAATGAAATC+AGG 0.417445 7_3:-84112479 Msa1131560:CDS
GGGCATGTGTAGTTGCTCTT+GGG 0.422892 7_3:-84112852 Msa1131560:CDS
GCGTTGCTACTCTAGTGGAA+TGG 0.434843 7_3:-84111985 Msa1131560:CDS
AACTACACATGCCCCAGTTA+AGG 0.441925 7_3:+84112861 None:intergenic
GAGAATATGATCAGTGGAAC+AGG 0.442053 7_3:-84114549 Msa1131560:CDS
TGGAAGCTTCTGAGGTGAGT+GGG 0.445335 7_3:-84112535 Msa1131560:CDS
TTTATGAATAAGTAATTTGA+TGG 0.452718 7_3:-84111845 Msa1131560:three_prime_UTR
CTTGGTCAAATCAAACCTCT+TGG 0.456662 7_3:-84114892 Msa1131560:CDS
GACAAGAAGCGCTCAGCGAC+AGG 0.458688 7_3:-84112013 Msa1131560:CDS
TTTGTAGTTTGTTGATGAAA+AGG 0.465143 7_3:-84112077 Msa1131560:intron
ACTATGGAGGCTGCCAATAG+AGG 0.468865 7_3:-84112507 Msa1131560:CDS
GATGTTGTCACAGCTTCAAA+TGG 0.489147 7_3:-84114513 Msa1131560:CDS
AATCAAACCTCTTGGGGTGG+AGG 0.496211 7_3:-84114884 Msa1131560:intron
TGCCAATAGAGGAAAGCTAC+TGG 0.500297 7_3:-84112496 Msa1131560:CDS
ACTCACACTGGCAGATGCTC+TGG 0.502116 7_3:-84113962 Msa1131560:CDS
TTGTAACCAAGGTGTTGAAA+AGG 0.505556 7_3:-84113932 Msa1131560:intron
GAACTCATGAAATTTGATAT+GGG 0.511960 7_3:-84114949 Msa1131560:CDS
CGGGAAGAAGAAAACACTAC+TGG 0.514621 7_3:+84111679 None:intergenic
TTGATTTGGCAACCTTAACT+GGG 0.515543 7_3:-84112873 Msa1131560:CDS
GAAGCTGTGACAACATCTCC+AGG 0.517489 7_3:+84114519 None:intergenic
AGTGGAACAGGTATGAGGCC+TGG 0.518327 7_3:-84114537 Msa1131560:CDS
TTAGGCGCTGCAAAAGCACT+TGG 0.530667 7_3:-84114910 Msa1131560:CDS
ATGAGTTCAATTGAACAGCC+AGG 0.536964 7_3:+84114964 None:intergenic
TGATCAGTGGAACAGGTATG+AGG 0.537047 7_3:-84114542 Msa1131560:CDS
TACAACATCAAGACTGGACC+TGG 0.549144 7_3:-84114982 Msa1131560:CDS
ATTTGGCGTTGCTACTCTAG+TGG 0.550785 7_3:-84111990 Msa1131560:CDS
GCCAATAGAGGAAAGCTACT+GGG 0.555482 7_3:-84112495 Msa1131560:CDS
TTGTTGATGAAAAGGTTCAA+TGG 0.556752 7_3:-84112069 Msa1131560:CDS
TGGTCAAATCAAACCTCTTG+GGG 0.558742 7_3:-84114890 Msa1131560:CDS
GGTGGCTACAACATCAAGAC+TGG 0.559048 7_3:-84114988 Msa1131560:CDS
ATAAGTAATTTGATGGTGGA+TGG 0.561782 7_3:-84111838 Msa1131560:three_prime_UTR
GTAAACACTGGTGGTAGACC+AGG 0.562483 7_3:-84112443 Msa1131560:CDS
ATGAATAAGTAATTTGATGG+TGG 0.565978 7_3:-84111842 Msa1131560:three_prime_UTR
TTGGAAGCTTCTGAGGTGAG+TGG 0.576502 7_3:-84112536 Msa1131560:CDS
CTGGTATATGCTTGTAACCA+AGG 0.587703 7_3:-84113943 Msa1131560:CDS
GGAAGCTTCTGAGGTGAGTG+GGG 0.596647 7_3:-84112534 Msa1131560:CDS
TGGTTGCATATTGACATGGC+TGG 0.610791 7_3:-84112049 Msa1131560:CDS
TGACTAACCTCCACCCCAAG+AGG 0.623663 7_3:+84114877 None:intergenic
TTGATGGTGGATGGAAAAGG+TGG 0.625881 7_3:-84111829 Msa1131560:three_prime_UTR
ATGGAAAAGGTGGTAAGCTG+AGG 0.629229 7_3:-84111819 Msa1131560:three_prime_UTR
TCAAATCAAACCTCTTGGGG+TGG 0.629691 7_3:-84114887 Msa1131560:CDS
CGCTTCTTGTCATTCCACAC+AGG 0.634105 7_3:+84112025 None:intergenic
TGATTTGGCAACCTTAACTG+GGG 0.658915 7_3:-84112872 Msa1131560:CDS
TGCTGAGGGAAGACTCACAC+TGG 0.659444 7_3:-84113974 Msa1131560:CDS
AATTTGATGGTGGATGGAAA+AGG 0.660741 7_3:-84111832 Msa1131560:three_prime_UTR
TTGACATGGCTGGTCCTGTG+TGG 0.671937 7_3:-84112039 Msa1131560:CDS
TCAATGGTTGCATATTGACA+TGG 0.673345 7_3:-84112053 Msa1131560:CDS
GGTGAACAACACTGATGCTG+AGG 0.673515 7_3:-84113989 Msa1131560:CDS
AACACTACTGGAAGCTACGT+AGG 0.675510 7_3:+84111691 None:intergenic
GTGAACAACACTGATGCTGA+GGG 0.676137 7_3:-84113988 Msa1131560:CDS
CTCATGAAATTTGATATGGG+TGG 0.679380 7_3:-84114946 Msa1131560:CDS
GGAATCAATGAAATCAGGAG+TGG 0.685410 7_3:-84112474 Msa1131560:CDS
AACACTGGTGGTAGACCAGG+TGG 0.694030 7_3:-84112440 Msa1131560:CDS
GCTTGTGAGAATATGATCAG+TGG 0.702653 7_3:-84114555 Msa1131560:CDS
GCAGCAGTGATAGAACCACC+TGG 0.709003 7_3:+84112425 None:intergenic
GTGGCTGATATGGTAAACAC+TGG 0.719705 7_3:-84112455 Msa1131560:CDS
TGAGTGGGGAGAAACTATGG+AGG 0.741229 7_3:-84112520 Msa1131560:CDS
GCTGATATGGTAAACACTGG+TGG 0.751322 7_3:-84112452 Msa1131560:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAGTGATTAAAAATTTTATA+GGG + chr7_3:84112919-84112938 None:intergenic 10.0%
!!! TATGATTTTACTTTAAAATA+GGG + chr7_3:84112950-84112969 None:intergenic 10.0%
!!! ATATGATTTTACTTTAAAAT+AGG + chr7_3:84112951-84112970 None:intergenic 10.0%
!!! ACAAAAATTAACTTTAAAAT+AGG - chr7_3:84113201-84113220 Msa1131560:intron 10.0%
!!! CAAAAATTAACTTTAAAATA+GGG - chr7_3:84113202-84113221 Msa1131560:intron 10.0%
!!! TATTTTAAGAAACTTATTAT+TGG - chr7_3:84114463-84114482 Msa1131560:intron 10.0%
!! AAAAAAAATCAAATGAGATT+AGG + chr7_3:84111913-84111932 None:intergenic 15.0%
!! AAATATGTATATATGTCATA+AGG - chr7_3:84112282-84112301 Msa1131560:intron 15.0%
!! AAATCTGTTTATGATTTATA+GGG + chr7_3:84112776-84112795 None:intergenic 15.0%
!! TATAAATCATAAACAGATTT+CGG - chr7_3:84112776-84112795 Msa1131560:intron 15.0%
!! TTTGCTTAACATTTAATATT+TGG - chr7_3:84112815-84112834 Msa1131560:intron 15.0%
!! TTGCTTAACATTTAATATTT+GGG - chr7_3:84112816-84112835 Msa1131560:intron 15.0%
!!! GTAGTGATTAAAAATTTTAT+AGG + chr7_3:84112920-84112939 None:intergenic 15.0%
!!! AAATTTTTAATCACTACTTT+TGG - chr7_3:84112923-84112942 Msa1131560:intron 15.0%
!!! TAGTGATTGAAAATTTTATA+GGG - chr7_3:84113233-84113252 Msa1131560:intron 15.0%
!! CAAATCTATCAAAATATTAA+GGG + chr7_3:84113334-84113353 None:intergenic 15.0%
!! GAAGTTTGTAAATATAAAAA+AGG + chr7_3:84113633-84113652 None:intergenic 15.0%
!!! CTAAGTTCATATATTATTTT+GGG - chr7_3:84113951-84113970 Msa1131560:CDS 15.0%
!!! TAAGTTCATATATTATTTTG+GGG - chr7_3:84113952-84113971 Msa1131560:CDS 15.0%
!!! TGAAAGATATATTATTTTGA+AGG - chr7_3:84114046-84114065 Msa1131560:intron 15.0%
!!! GAAATTTTTACTATAGATTA+GGG + chr7_3:84114429-84114448 None:intergenic 15.0%
!!! TGAAATTTTTACTATAGATT+AGG + chr7_3:84114430-84114449 None:intergenic 15.0%
!!! ATATACTAGTTTCTTAAATA+TGG - chr7_3:84114492-84114511 Msa1131560:intron 15.0%
!! ATAAGATAAAAATCATGTTA+TGG - chr7_3:84114751-84114770 Msa1131560:intron 15.0%
!! TTTATGAATAAGTAATTTGA+TGG - chr7_3:84114797-84114816 Msa1131560:intron 15.0%
!!! TCCATTTGTTTTTTTTTTTT+TGG - chr7_3:84115030-84115049 Msa1131560:CDS 15.0%
!! TCCAAAAAAAAAAAAACAAA+TGG + chr7_3:84115034-84115053 None:intergenic 15.0%
!! ACATGAAATTGAAAAATTGA+AGG + chr7_3:84111805-84111824 None:intergenic 20.0%
!! GTACAATAGGTTAAATTTAT+TGG + chr7_3:84112202-84112221 None:intergenic 20.0%
!! TAAATTTAACCTATTGTACA+TGG - chr7_3:84112203-84112222 Msa1131560:intron 20.0%
!!! GCTTCTTCAAATATTTTATT+TGG - chr7_3:84112329-84112348 Msa1131560:intron 20.0%
!!! ATTGCGAAACTTTTTTAAAA+TGG + chr7_3:84112388-84112407 None:intergenic 20.0%
!! AATAATCATTTATGATGCTT+GGG - chr7_3:84112405-84112424 Msa1131560:intron 20.0%
!! AAATCTATTGTAGTTATACT+TGG - chr7_3:84112474-84112493 Msa1131560:CDS 20.0%
!! GTTAATACTTAACAAAATCA+AGG + chr7_3:84112584-84112603 None:intergenic 20.0%
!!! AACATTTTATATGATGTACT+AGG - chr7_3:84112601-84112620 Msa1131560:intron 20.0%
!! GAAATCTGTTTATGATTTAT+AGG + chr7_3:84112777-84112796 None:intergenic 20.0%
!! AAATGTTAAGCAAATGATTT+GGG + chr7_3:84112809-84112828 None:intergenic 20.0%
!! TAAATGTTAAGCAAATGATT+TGG + chr7_3:84112810-84112829 None:intergenic 20.0%
!!! ATTTGGGTTAAATATGTTTT+TGG - chr7_3:84112832-84112851 Msa1131560:intron 20.0%
!!! GAAAAGTTGGTATATTTATA+GGG + chr7_3:84113293-84113312 None:intergenic 20.0%
!!! TGAAAAGTTGGTATATTTAT+AGG + chr7_3:84112860-84112879 None:intergenic 20.0%
!!! AAATTTTCAATCACTACTTT+TGG + chr7_3:84113229-84113248 None:intergenic 20.0%
!!! GTAGTGATTGAAAATTTTAT+AGG - chr7_3:84113232-84113251 Msa1131560:intron 20.0%
!!! AAGTTGAAGGAAAATTTTAT+AGG - chr7_3:84113261-84113280 Msa1131560:intron 20.0%
!!! AGTTGAAGGAAAATTTTATA+GGG - chr7_3:84113262-84113281 Msa1131560:intron 20.0%
!!! GAAAAGTTGGTATATTTATA+GGG - chr7_3:84113293-84113312 Msa1131560:intron 20.0%
!!! TATTAAGGGTTAAATGTTTT+TGG + chr7_3:84113320-84113339 None:intergenic 20.0%
!! CCAAATCTATCAAAATATTA+AGG + chr7_3:84113335-84113354 None:intergenic 20.0%
!!! CCTTAATATTTTGATAGATT+TGG - chr7_3:84113332-84113351 Msa1131560:intron 20.0%
!! ATATTCTTAAAGAATGAGAA+TGG + chr7_3:84113548-84113567 None:intergenic 20.0%
!!! TCATTCTTTAAGAATATCTA+TGG - chr7_3:84113551-84113570 Msa1131560:intron 20.0%
!! CCAAAATAATATATGAACTT+AGG + chr7_3:84113953-84113972 None:intergenic 20.0%
!!! CCTAAGTTCATATATTATTT+TGG - chr7_3:84113950-84113969 Msa1131560:CDS 20.0%
!! GAAAAATTCAAACAATAACA+CGG + chr7_3:84114283-84114302 None:intergenic 20.0%
!!! ATTTTTCTTCTCAATGTAAT+TGG - chr7_3:84114296-84114315 Msa1131560:intron 20.0%
!! TTTAAGAAACTTATTATTGG+AGG - chr7_3:84114466-84114485 Msa1131560:intron 20.0%
!! CTGAAATCTTCAAATATTAT+TGG - chr7_3:84114708-84114727 Msa1131560:intron 20.0%
!!! AAAGAATACTTTGTATTTTC+AGG - chr7_3:84114873-84114892 Msa1131560:intron 20.0%
!!! AAGAATACTTTGTATTTTCA+GGG - chr7_3:84114874-84114893 Msa1131560:intron 20.0%
! AACGTAATAAAAAAGCAGTA+AGG + chr7_3:84111617-84111636 None:intergenic 25.0%
! TGAACTCATGAAATTTGATA+TGG - chr7_3:84111692-84111711 Msa1131560:three_prime_UTR 25.0%
! GAACTCATGAAATTTGATAT+GGG - chr7_3:84111693-84111712 Msa1131560:three_prime_UTR 25.0%
!! TTTATACAAACCCGTTATTT+TGG + chr7_3:84111871-84111890 None:intergenic 25.0%
! ATAATAAGAGTTGTTGAGTA+TGG - chr7_3:84111948-84111967 Msa1131560:exon 25.0%
!!! GGATTTTCATTTTACTTTTC+TGG - chr7_3:84111969-84111988 Msa1131560:CDS 25.0%
!!! TTTTCATTTTACTTTTCTGG+TGG - chr7_3:84111972-84111991 Msa1131560:CDS 25.0%
!!! AATGATTTGTTTGGAATACT+TGG - chr7_3:84112009-84112028 Msa1131560:CDS 25.0%
! TTCAAATGGAAAAACTATTG+AGG - chr7_3:84112143-84112162 Msa1131560:intron 25.0%
! CAATAATCATTTATGATGCT+TGG - chr7_3:84112404-84112423 Msa1131560:intron 25.0%
! ATATGTTTACAGAGTTCATA+GGG + chr7_3:84112551-84112570 None:intergenic 25.0%
!! AGTTGAAGGAAAATTTTAGA+GGG + chr7_3:84112890-84112909 None:intergenic 25.0%
!! AAGTTGAAGGAAAATTTTAG+AGG + chr7_3:84112891-84112910 None:intergenic 25.0%
!!! CGAAAAGTTGGTATATTTAT+AGG - chr7_3:84113292-84113311 Msa1131560:intron 25.0%
! AGTCAAAATGTGAATTTAGT+TGG + chr7_3:84113502-84113521 None:intergenic 25.0%
!! TCTTCTTCAGATTATTGATT+TGG - chr7_3:84113755-84113774 Msa1131560:intron 25.0%
!!! TTATTTTTACCTGCAATTGA+GGG + chr7_3:84113816-84113835 None:intergenic 25.0%
!!! TTTATTTTTACCTGCAATTG+AGG + chr7_3:84113817-84113836 None:intergenic 25.0%
! GGAATATGGTAATAAAAAAG+AGG + chr7_3:84113872-84113891 None:intergenic 25.0%
!!! TTGCAAGAAATTTTGGAATA+TGG + chr7_3:84113886-84113905 None:intergenic 25.0%
!! CTAATTCTTGCAAGAAATTT+TGG + chr7_3:84113893-84113912 None:intergenic 25.0%
! CAAAATTTCTTGCAAGAATT+AGG - chr7_3:84113891-84113910 Msa1131560:intron 25.0%
!! AAAAAACTCTCTATTTTGCT+TGG - chr7_3:84113916-84113935 Msa1131560:intron 25.0%
! GGAAATAGTAAAGTTAAACT+CGG - chr7_3:84113973-84113992 Msa1131560:CDS 25.0%
! GAAATAGTAAAGTTAAACTC+GGG - chr7_3:84113974-84113993 Msa1131560:CDS 25.0%
!!! TTTGTAGTTTGTTGATGAAA+AGG - chr7_3:84114565-84114584 Msa1131560:CDS 25.0%
!! AAATCATGTTATGGTTTTTC+TGG - chr7_3:84114760-84114779 Msa1131560:intron 25.0%
!!! TTATGGTTTTTCTGGTTATT+TGG - chr7_3:84114768-84114787 Msa1131560:intron 25.0%
!!! TATGGTTTTTCTGGTTATTT+GGG - chr7_3:84114769-84114788 Msa1131560:intron 25.0%
! ATGAATAAGTAATTTGATGG+TGG - chr7_3:84114800-84114819 Msa1131560:intron 25.0%
!! TTTTTGTATTGAATACACTG+TGG + chr7_3:84114855-84114874 None:intergenic 25.0%
! TAGATGCTTAACTGAATTAT+TGG + chr7_3:84114904-84114923 None:intergenic 25.0%
! TTTCATGTCAAGATTTGCTT+AGG - chr7_3:84111817-84111836 Msa1131560:three_prime_UTR 30.0%
! TTCATGTCAAGATTTGCTTA+GGG - chr7_3:84111818-84111837 Msa1131560:three_prime_UTR 30.0%
! AAGATTTGCTTAGGGATTAT+TGG - chr7_3:84111826-84111845 Msa1131560:three_prime_UTR 30.0%
! AGATTTGCTTAGGGATTATT+GGG - chr7_3:84111827-84111846 Msa1131560:three_prime_UTR 30.0%
ATTCCAAACAAATCATTCCA+CGG + chr7_3:84112006-84112025 None:intergenic 30.0%
AATAAAAAGCTTGCATATGC+AGG - chr7_3:84112047-84112066 Msa1131560:CDS 30.0%
! TTGCAATTGAAGAGAAGTTT+TGG - chr7_3:84112524-84112543 Msa1131560:CDS 30.0%
TATGTTTACAGAGTTCATAG+GGG + chr7_3:84112550-84112569 None:intergenic 30.0%
CATATGTTTACAGAGTTCAT+AGG + chr7_3:84112552-84112571 None:intergenic 30.0%
ATGTACTAGGAATTTGACAT+TGG - chr7_3:84112614-84112633 Msa1131560:intron 30.0%
! ATTGGTGTAACTTTTTGTGT+AGG - chr7_3:84112632-84112651 Msa1131560:intron 30.0%
TTATAGGGACTAAAAGTTGA+AGG + chr7_3:84113248-84113267 None:intergenic 30.0%
TTATAGGGACTAAAAGTTGA+AGG - chr7_3:84113248-84113267 Msa1131560:intron 30.0%
GATGAAAGAGAATTACTAGT+AGG - chr7_3:84113373-84113392 Msa1131560:intron 30.0%
! ATATAAGAGTGTACTCAAGA+CGG + chr7_3:84113423-84113442 None:intergenic 30.0%
!! GGACAAGTTTACTTTTGTTT+CGG - chr7_3:84113572-84113591 Msa1131560:intron 30.0%
!! CTCATATGTTGTTTGTTTTC+TGG - chr7_3:84113652-84113671 Msa1131560:intron 30.0%
!!! AGTTTTAGAATACTGCTAAC+TGG - chr7_3:84113723-84113742 Msa1131560:intron 30.0%
!! GTTTGACAGTTTTATCTTTC+AGG + chr7_3:84114010-84114029 None:intergenic 30.0%
! TCTTTTACCAGTTCATCATT+GGG + chr7_3:84114082-84114101 None:intergenic 30.0%
! TTCTTTTACCAGTTCATCAT+TGG + chr7_3:84114083-84114102 None:intergenic 30.0%
! TGAACTGGTAAAAGAAGTTT+TGG - chr7_3:84114087-84114106 Msa1131560:intron 30.0%
CACAATCACTTGGATAAATA+TGG + chr7_3:84114386-84114405 None:intergenic 30.0%
! TTGTTGATGAAAAGGTTCAA+TGG - chr7_3:84114573-84114592 Msa1131560:CDS 30.0%
!!! ATGGTTTTTCTGGTTATTTG+GGG - chr7_3:84114770-84114789 Msa1131560:intron 30.0%
!! ATAAGTAATTTGATGGTGGA+TGG - chr7_3:84114804-84114823 Msa1131560:intron 30.0%
!!! CGTTTTCTGCTTTTTATCAG+TGG - chr7_3:84111633-84111652 Msa1131560:three_prime_UTR 35.0%
!!! TTTCTGCTTTTTATCAGTGG+TGG - chr7_3:84111636-84111655 Msa1131560:three_prime_UTR 35.0%
CTCATGAAATTTGATATGGG+TGG - chr7_3:84111696-84111715 Msa1131560:three_prime_UTR 35.0%
TTGGTCAAATCAAACCTCTT+GGG - chr7_3:84111751-84111770 Msa1131560:three_prime_UTR 35.0%
! AGGTTAGTCACTTAAGTCAT+TGG - chr7_3:84111778-84111797 Msa1131560:three_prime_UTR 35.0%
GATTATTGGGTGATGTAGTA+CGG - chr7_3:84111840-84111859 Msa1131560:three_prime_UTR 35.0%
ATTATTGGGTGATGTAGTAC+GGG - chr7_3:84111841-84111860 Msa1131560:three_prime_UTR 35.0%
!! TTTCCGTGGAATGATTTGTT+TGG - chr7_3:84112000-84112019 Msa1131560:CDS 35.0%
! GATTTGTTTGGAATACTTGG+TGG - chr7_3:84112012-84112031 Msa1131560:CDS 35.0%
ATGGAAAAACTATTGAGGTG+AGG - chr7_3:84112148-84112167 Msa1131560:intron 35.0%
TGGAAAAACTATTGAGGTGA+GGG - chr7_3:84112149-84112168 Msa1131560:intron 35.0%
GCATCAATACCATGTACAAT+AGG + chr7_3:84112215-84112234 None:intergenic 35.0%
ATATATGTCATAAGGTCCAG+TGG - chr7_3:84112290-84112309 Msa1131560:intron 35.0%
!! TTGTAACCAAGGTGTTGAAA+AGG - chr7_3:84112710-84112729 Msa1131560:intron 35.0%
! AGTATACCTTTTCAACACCT+TGG + chr7_3:84112719-84112738 None:intergenic 35.0%
! GTTAAGCAAATGATTTGGGA+AGG + chr7_3:84112805-84112824 None:intergenic 35.0%
GAGGGACTAAAATGAAAAGT+TGG + chr7_3:84112872-84112891 None:intergenic 35.0%
TAGGGACTAAAACGAAAAGT+TGG - chr7_3:84113280-84113299 Msa1131560:intron 35.0%
CTCAAGACGGTGTAAAAAAT+GGG + chr7_3:84113410-84113429 None:intergenic 35.0%
ACTCAAGACGGTGTAAAAAA+TGG + chr7_3:84113411-84113430 None:intergenic 35.0%
!! ATTGATTTGGCAACCTTAAC+TGG - chr7_3:84113768-84113787 Msa1131560:intron 35.0%
!! TTGATTTGGCAACCTTAACT+GGG - chr7_3:84113769-84113788 Msa1131560:intron 35.0%
TACTGGGAATCAATGAAATC+AGG - chr7_3:84114163-84114182 Msa1131560:intron 35.0%
TCAATGGTTGCATATTGACA+TGG - chr7_3:84114589-84114608 Msa1131560:intron 35.0%
!! AATTTGATGGTGGATGGAAA+AGG - chr7_3:84114810-84114829 Msa1131560:intron 35.0%
!!! TGCGTTTGTTTGTTTTTGAC+GGG + chr7_3:84114985-84115004 None:intergenic 35.0%
!!! CTGCGTTTGTTTGTTTTTGA+CGG + chr7_3:84114986-84115005 None:intergenic 35.0%
ATGAGTTCAATTGAACAGCC+AGG + chr7_3:84111681-84111700 None:intergenic 40.0%
CTTGGTCAAATCAAACCTCT+TGG - chr7_3:84111750-84111769 Msa1131560:three_prime_UTR 40.0%
TGGTCAAATCAAACCTCTTG+GGG - chr7_3:84111752-84111771 Msa1131560:three_prime_UTR 40.0%
GTACGGGATCTCCAAAATAA+CGG - chr7_3:84111857-84111876 Msa1131560:three_prime_UTR 40.0%
TACGGGATCTCCAAAATAAC+GGG - chr7_3:84111858-84111877 Msa1131560:three_prime_UTR 40.0%
GCTTGTGAGAATATGATCAG+TGG - chr7_3:84112087-84112106 Msa1131560:intron 40.0%
GAGAATATGATCAGTGGAAC+AGG - chr7_3:84112093-84112112 Msa1131560:intron 40.0%
GATGTTGTCACAGCTTCAAA+TGG - chr7_3:84112129-84112148 Msa1131560:intron 40.0%
TATTGAGGTGAGGGTTTACT+AGG - chr7_3:84112158-84112177 Msa1131560:intron 40.0%
ACAAATTACATGCTGTCCAC+TGG + chr7_3:84112309-84112328 None:intergenic 40.0%
CTGGTATATGCTTGTAACCA+AGG - chr7_3:84112699-84112718 Msa1131560:intron 40.0%
! TGATTTGGCAACCTTAACTG+GGG - chr7_3:84113770-84113789 Msa1131560:intron 40.0%
! GTTTTCACCCAATGATGAAC+TGG - chr7_3:84114072-84114091 Msa1131560:intron 40.0%
!!! AGAAGTTTTGGAAGCTTCTG+AGG - chr7_3:84114099-84114118 Msa1131560:intron 40.0%
GGAATCAATGAAATCAGGAG+TGG - chr7_3:84114168-84114187 Msa1131560:intron 40.0%
ATGTAATTGGACAGCTGTGT+TGG - chr7_3:84114309-84114328 Msa1131560:intron 40.0%
TGTAATTGGACAGCTGTGTT+GGG - chr7_3:84114310-84114329 Msa1131560:intron 40.0%
CAGATGTTATTACCACTCCA+CGG + chr7_3:84114338-84114357 None:intergenic 40.0%
! GCAGTGTCTTCTTTTGCAAA+GGG - chr7_3:84115002-84115021 Msa1131560:CDS 40.0%
! CAGTGTCTTCTTTTGCAAAG+GGG - chr7_3:84115003-84115022 Msa1131560:CDS 40.0%
! AGTGTCTTCTTTTGCAAAGG+GGG - chr7_3:84115004-84115023 Msa1131560:CDS 40.0%
TACAACATCAAGACTGGACC+TGG - chr7_3:84111660-84111679 Msa1131560:three_prime_UTR 45.0%
! TTTTGCAGCGCCTAAAACTG+CGG + chr7_3:84111727-84111746 None:intergenic 45.0%
TCAAATCAAACCTCTTGGGG+TGG - chr7_3:84111755-84111774 Msa1131560:three_prime_UTR 45.0%
TGATCAGTGGAACAGGTATG+AGG - chr7_3:84112100-84112119 Msa1131560:intron 45.0%
GTGAACAACACTGATGCTGA+GGG - chr7_3:84112654-84112673 Msa1131560:intron 45.0%
! AGCACTTGCTAGGCAAATCT+TGG + chr7_3:84113602-84113621 None:intergenic 45.0%
AACTACACATGCCCCAGTTA+AGG + chr7_3:84113784-84113803 None:intergenic 45.0%
AAGTTAAACTCGGGAGAGAC+TGG - chr7_3:84113983-84114002 Msa1131560:CDS 45.0%
TGCCAATAGAGGAAAGCTAC+TGG - chr7_3:84114146-84114165 Msa1131560:intron 45.0%
GCCAATAGAGGAAAGCTACT+GGG - chr7_3:84114147-84114166 Msa1131560:intron 45.0%
TCCCAGTAGCTTTCCTCTAT+TGG + chr7_3:84114151-84114170 None:intergenic 45.0%
GAAATCAGGAGTGGCTGATA+TGG - chr7_3:84114177-84114196 Msa1131560:intron 45.0%
GTGGCTGATATGGTAAACAC+TGG - chr7_3:84114187-84114206 Msa1131560:intron 45.0%
GCTGATATGGTAAACACTGG+TGG - chr7_3:84114190-84114209 Msa1131560:intron 45.0%
! TGCTGCTCTTTTCCTGAAAC+AGG - chr7_3:84114234-84114253 Msa1131560:intron 45.0%
ATTAAGCACGCACCTGTTTC+AGG + chr7_3:84114249-84114268 None:intergenic 45.0%
TCCAAGTGATTGTGTGCCAA+TGG - chr7_3:84114392-84114411 Msa1131560:intron 45.0%
TCCATTGGCACACAATCACT+TGG + chr7_3:84114396-84114415 None:intergenic 45.0%
! TAGGGCAGTTCAAGTTCCAT+TGG + chr7_3:84114411-84114430 None:intergenic 45.0%
TGGTTGCATATTGACATGGC+TGG - chr7_3:84114593-84114612 Msa1131560:intron 45.0%
ATTTGGCGTTGCTACTCTAG+TGG - chr7_3:84114652-84114671 Msa1131560:intron 45.0%
CGTTGCTACTCTAGTGGAAT+GGG - chr7_3:84114658-84114677 Msa1131560:intron 45.0%
!! TTGATGGTGGATGGAAAAGG+TGG - chr7_3:84114813-84114832 Msa1131560:intron 45.0%
ATGGAAAAGGTGGTAAGCTG+AGG - chr7_3:84114823-84114842 Msa1131560:intron 45.0%
AACACTACTGGAAGCTACGT+AGG + chr7_3:84114954-84114973 None:intergenic 45.0%
CGGGAAGAAGAAAACACTAC+TGG + chr7_3:84114966-84114985 None:intergenic 45.0%
! CGCAGTGTCTTCTTTTGCAA+AGG - chr7_3:84115001-84115020 Msa1131560:CDS 45.0%
!!! AAAAAATTCTAAATTTTTTT+GGG + chr7_3:84113035-84113054 None:intergenic 5.0%
!!! TAAAAAATTCTAAATTTTTT+TGG + chr7_3:84113036-84113055 None:intergenic 5.0%
!!! ATGAATTTTTATATTTTTTA+TGG - chr7_3:84113074-84113093 Msa1131560:intron 5.0%
!!! TAAAAAATTCTAATTTTTTT+TGG - chr7_3:84113127-84113146 Msa1131560:intron 5.0%
!!! AAAAAATTCTAATTTTTTTT+GGG - chr7_3:84113128-84113147 Msa1131560:intron 5.0%
GGTGGCTACAACATCAAGAC+TGG - chr7_3:84111654-84111673 Msa1131560:three_prime_UTR 50.0%
!! TTAGGCGCTGCAAAAGCACT+TGG - chr7_3:84111732-84111751 Msa1131560:three_prime_UTR 50.0%
AATCAAACCTCTTGGGGTGG+AGG - chr7_3:84111758-84111777 Msa1131560:three_prime_UTR 50.0%
GAAGCTGTGACAACATCTCC+AGG + chr7_3:84112126-84112145 None:intergenic 50.0%
GGTGAACAACACTGATGCTG+AGG - chr7_3:84112653-84112672 Msa1131560:intron 50.0%
!! TGCCTAGCAAGTGCTGACTT+TGG - chr7_3:84113607-84113626 Msa1131560:intron 50.0%
GGGCATGTGTAGTTGCTCTT+GGG - chr7_3:84113790-84113809 Msa1131560:intron 50.0%
!! TTGGAAGCTTCTGAGGTGAG+TGG - chr7_3:84114106-84114125 Msa1131560:intron 50.0%
!! TGGAAGCTTCTGAGGTGAGT+GGG - chr7_3:84114107-84114126 Msa1131560:intron 50.0%
AGGTGAGTGGGGAGAAACTA+TGG - chr7_3:84114119-84114138 Msa1131560:intron 50.0%
TGAGTGGGGAGAAACTATGG+AGG - chr7_3:84114122-84114141 Msa1131560:intron 50.0%
ACTATGGAGGCTGCCAATAG+AGG - chr7_3:84114135-84114154 Msa1131560:intron 50.0%
GTAAACACTGGTGGTAGACC+AGG - chr7_3:84114199-84114218 Msa1131560:intron 50.0%
CGCTTCTTGTCATTCCACAC+AGG + chr7_3:84114620-84114639 None:intergenic 50.0%
GCGTTGCTACTCTAGTGGAA+TGG - chr7_3:84114657-84114676 Msa1131560:intron 50.0%
! GTCTTCTTTTGCAAAGGGGG+TGG - chr7_3:84115007-84115026 Msa1131560:CDS 50.0%
! GGTGGTTCAGCCGCAGTTTT+AGG - chr7_3:84111714-84111733 Msa1131560:three_prime_UTR 55.0%
TGACTAACCTCCACCCCAAG+AGG + chr7_3:84111768-84111787 None:intergenic 55.0%
!!! TTCTGGTGGCTGCTTTTCCG+TGG - chr7_3:84111986-84112005 Msa1131560:CDS 55.0%
AGTGGAACAGGTATGAGGCC+TGG - chr7_3:84112105-84112124 Msa1131560:intron 55.0%
TGCTGAGGGAAGACTCACAC+TGG - chr7_3:84112668-84112687 Msa1131560:intron 55.0%
ACTCACACTGGCAGATGCTC+TGG - chr7_3:84112680-84112699 Msa1131560:intron 55.0%
GGCCAAAGTCAGCACTTGCT+AGG + chr7_3:84113612-84113631 None:intergenic 55.0%
GGGGCATGTGTAGTTGCTCT+TGG - chr7_3:84113789-84113808 Msa1131560:intron 55.0%
!! GGAAGCTTCTGAGGTGAGTG+GGG - chr7_3:84114108-84114127 Msa1131560:intron 55.0%
AACACTGGTGGTAGACCAGG+TGG - chr7_3:84114202-84114221 Msa1131560:intron 55.0%
GCAGCAGTGATAGAACCACC+TGG + chr7_3:84114220-84114239 None:intergenic 55.0%
! TTGACATGGCTGGTCCTGTG+TGG - chr7_3:84114603-84114622 Msa1131560:intron 55.0%
AAGCGCTCAGCGACAGGATT+TGG - chr7_3:84114635-84114654 Msa1131560:intron 55.0%
GCTCTTGGGCCCTCAATTGC+AGG - chr7_3:84113804-84113823 Msa1131560:intron 60.0%
! GACAGCTGTGTTGGGTACCG+TGG - chr7_3:84114318-84114337 Msa1131560:intron 60.0%
! CTGTGTTGGGTACCGTGGAG+TGG - chr7_3:84114323-84114342 Msa1131560:intron 60.0%
!! GACAAGAAGCGCTCAGCGAC+AGG - chr7_3:84114629-84114648 Msa1131560:intron 60.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 84111606 84115058 84111606 ID=Msa1131560;Name=Msa1131560
chr7_3 mRNA 84111606 84115058 84111606 ID=Msa1131560-mRNA-1;Parent=Msa1131560;Name=Msa1131560-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|1|0.83|1|1|1|6|358|241
chr7_3 exon 84111606 84112092 84111606 ID=Msa1131560-mRNA-1:exon:25049;Parent=Msa1131560-mRNA-1
chr7_3 exon 84112409 84112596 84112409 ID=Msa1131560-mRNA-1:exon:25048;Parent=Msa1131560-mRNA-1
chr7_3 exon 84112839 84112899 84112839 ID=Msa1131560-mRNA-1:exon:25047;Parent=Msa1131560-mRNA-1
chr7_3 exon 84113933 84114010 84113933 ID=Msa1131560-mRNA-1:exon:25046;Parent=Msa1131560-mRNA-1
chr7_3 exon 84114500 84114595 84114500 ID=Msa1131560-mRNA-1:exon:25045;Parent=Msa1131560-mRNA-1
chr7_3 exon 84114885 84115058 84114885 ID=Msa1131560-mRNA-1:exon:25044;Parent=Msa1131560-mRNA-1
chr7_3 CDS 84114885 84115058 84114885 ID=Msa1131560-mRNA-1:cds;Parent=Msa1131560-mRNA-1
chr7_3 CDS 84114500 84114595 84114500 ID=Msa1131560-mRNA-1:cds;Parent=Msa1131560-mRNA-1
chr7_3 CDS 84113933 84114010 84113933 ID=Msa1131560-mRNA-1:cds;Parent=Msa1131560-mRNA-1
chr7_3 CDS 84112839 84112899 84112839 ID=Msa1131560-mRNA-1:cds;Parent=Msa1131560-mRNA-1
chr7_3 CDS 84112409 84112596 84112409 ID=Msa1131560-mRNA-1:cds;Parent=Msa1131560-mRNA-1
chr7_3 CDS 84111964 84112092 84111964 ID=Msa1131560-mRNA-1:cds;Parent=Msa1131560-mRNA-1
chr7_3 three_prime_UTR 84111606 84111963 84111606 ID=Msa1131560-mRNA-1:three_prime_utr;Parent=Msa1131560-mRNA-1
Gene Sequence

>Msa1131560

TTTTTTTTCCTTACTGCTTTTTTATTACGTTTTCTGCTTTTTATCAGTGGTGGCTACAACATCAAGACTGGACCTGGCTGTTCAATTGAACTCATGAAATTTGATATGGGTGGTTCAGCCGCAGTTTTAGGCGCTGCAAAAGCACTTGGTCAAATCAAACCTCTTGGGGTGGAGGTTCATTTTATAGTTGCAGCTTGTGAGAATATGATCAGTGGAACAGGTATGAGGCCTGGAGATGTTGTCACAGCTTCAAATGGAAAAACTATTGAGGTGAACAACACTGATGCTGAGGGAAGACTCACACTGGCAGATGCTCTGGTATATGCTTGTAACCAAGGTGTTGAAAAGATTATTGATTTGGCAACCTTAACTGGGGCATGTGTAGTTGCTCTTGGGCCCTCAATTGCAGGTGTGTTTTCACCCAATGATGAACTGGTAAAAGAAGTTTTGGAAGCTTCTGAGGTGAGTGGGGAGAAACTATGGAGGCTGCCAATAGAGGAAAGCTACTGGGAATCAATGAAATCAGGAGTGGCTGATATGGTAAACACTGGTGGTAGACCAGGTGGTTCTATCACTGCTGCTCTTTTCCTGAAACAGTTTGTTGATGAAAAGGTTCAATGGTTGCATATTGACATGGCTGGTCCTGTGTGGAATGACAAGAAGCGCTCAGCGACAGGATTTGGCGTTGCTACTCTAGTGGAATGGGTTTTGAAAAATTCTTCTTAA

Protein sequence

>Msa1131560

FFFLTAFLLRFLLFISGGYNIKTGPGCSIELMKFDMGGSAAVLGAAKALGQIKPLGVEVHFIVAACENMISGTGMRPGDVVTASNGKTIEVNNTDAEGRLTLADALVYACNQGVEKIIDLATLTGACVVALGPSIAGVFSPNDELVKEVLEASEVSGEKLWRLPIEESYWESMKSGVADMVNTGGRPGGSITAALFLKQFVDEKVQWLHIDMAGPVWNDKKRSATGFGVATLVEWVLKNSS*