AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0126880

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0126880 MtrunA17_Chr1g0190121 100.000 319 0 0 30 348 1 319 0.0 669
Msa0126880 MtrunA17_Chr7g0274931 92.790 319 23 0 30 348 1 319 0.0 636
Msa0126880 MtrunA17_Chr5g0436061 89.073 302 32 1 30 330 17 318 0.0 572
Msa0126880 MtrunA17_Chr1g0186811 83.013 312 53 0 30 341 1 312 0.0 568
Msa0126880 MtrunA17_Chr1g0167751 82.812 320 54 1 30 348 1 320 0.0 566
Msa0126880 MtrunA17_Chr8g0387541 79.114 316 64 2 30 344 1 315 0.0 543
Msa0126880 MtrunA17_Chr7g0272371 77.097 310 65 2 28 337 3 306 1.15e-180 509
Msa0126880 MtrunA17_Chr8g0334361 80.623 289 56 0 35 323 4 292 1.84e-180 508
Msa0126880 MtrunA17_Chr7g0268381 45.608 296 159 2 33 327 5 299 4.88e-95 291
Msa0126880 MtrunA17_Chr8g0364041 46.488 299 151 3 32 329 4 294 7.82e-95 290
Msa0126880 MtrunA17_Chr8g0378521 45.608 296 152 3 35 329 9 296 7.39e-94 287
Msa0126880 MtrunA17_Chr5g0445011 47.464 276 144 1 55 329 17 292 9.26e-94 287
Msa0126880 MtrunA17_Chr5g0415261 45.819 299 153 3 32 329 4 294 1.00e-92 285
Msa0126880 MtrunA17_Chr1g0165341 42.652 279 157 3 54 330 15 292 2.55e-87 270
Msa0126880 MtrunA17_Chr2g0322121 47.097 310 145 8 32 323 638 946 2.87e-79 266
Msa0126880 MtrunA17_Chr4g0025471 46.926 309 147 7 32 323 643 951 5.29e-79 266
Msa0126880 MtrunA17_Chr3g0097231 43.182 264 143 4 51 308 184 446 1.86e-68 227
Msa0126880 MtrunA17_Chr2g0330311 42.570 249 134 6 67 308 227 473 2.70e-62 212
Msa0126880 MtrunA17_Chr2g0330331 42.742 248 134 5 68 308 66 312 1.33e-59 200
Msa0126880 MtrunA17_Chr1g0196211 49.444 180 81 5 137 307 2 180 1.63e-50 172
Msa0126880 MtrunA17_Chr8g0369981 30.909 330 158 11 67 326 105 434 7.49e-36 139
Msa0126880 MtrunA17_Chr1g0196221 46.491 114 52 2 32 136 522 635 1.51e-22 101
Msa0126880 MtrunA17_Chr2g0330011 36.134 119 66 4 60 169 232 349 6.00e-16 79.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0126880 AT2G39840.1 89.073 302 32 1 30 330 14 315 0.0 573
Msa0126880 AT5G59160.3 84.244 311 47 2 22 330 1 311 0.0 555
Msa0126880 AT5G59160.2 84.244 311 47 2 22 330 1 311 0.0 555
Msa0126880 AT5G59160.1 84.244 311 47 2 22 330 1 311 0.0 555
Msa0126880 AT2G29400.1 83.013 312 49 3 20 328 5 315 0.0 552
Msa0126880 AT3G46820.1 81.350 311 56 1 22 330 1 311 0.0 544
Msa0126880 AT1G64040.1 79.114 316 64 2 30 344 1 315 0.0 538
Msa0126880 AT5G43380.2 76.205 332 73 1 30 361 1 326 0.0 534
Msa0126880 AT5G43380.1 79.355 310 64 0 30 339 1 310 0.0 531
Msa0126880 AT5G43380.3 77.570 321 72 0 30 350 1 321 0.0 530
Msa0126880 AT4G11240.1 76.266 316 73 2 30 344 1 315 0.0 523
Msa0126880 AT5G27840.1 78.548 303 63 1 22 324 1 301 0.0 511
Msa0126880 AT5G27840.4 78.548 303 63 1 22 324 1 301 0.0 511
Msa0126880 AT5G27840.2 78.548 303 63 1 22 324 1 301 0.0 511
Msa0126880 AT5G27840.3 78.548 303 63 1 22 324 1 301 0.0 511
Msa0126880 AT3G05580.1 78.548 303 63 1 22 324 1 301 2.01e-179 506
Msa0126880 AT3G05580.2 77.953 254 54 1 22 275 1 252 1.26e-145 418
Msa0126880 AT2G42500.1 45.875 303 155 3 35 336 14 308 3.22e-97 296
Msa0126880 AT5G55260.1 47.826 276 143 1 55 329 17 292 3.16e-96 294
Msa0126880 AT3G58500.1 46.259 294 149 3 35 327 14 299 1.22e-95 293
Msa0126880 AT1G10430.2 45.946 296 151 3 35 329 7 294 7.70e-94 288
Msa0126880 AT1G10430.1 45.946 296 151 3 35 329 7 294 7.70e-94 288
Msa0126880 AT1G69960.1 45.608 296 152 3 35 329 8 295 1.83e-93 287
Msa0126880 AT4G26720.1 45.290 276 150 1 55 329 17 292 4.28e-93 286
Msa0126880 AT1G59830.1 45.270 296 153 3 35 329 7 294 4.44e-92 283
Msa0126880 AT5G55260.2 41.640 317 143 2 55 329 17 333 9.14e-88 273
Msa0126880 AT1G50370.1 41.935 279 159 3 54 330 15 292 2.03e-86 268
Msa0126880 AT3G19980.1 42.294 279 158 3 54 330 15 292 2.26e-86 268
Msa0126880 AT1G59830.2 47.791 249 121 3 35 282 7 247 3.13e-80 251
Msa0126880 AT4G03080.1 46.452 310 147 8 32 323 524 832 4.69e-80 267
Msa0126880 AT2G27210.1 48.264 288 133 6 51 323 671 957 7.81e-78 263
Msa0126880 AT2G27210.2 46.452 310 147 8 32 323 644 952 8.27e-78 263
Msa0126880 AT1G08420.1 46.602 309 146 8 33 323 661 968 4.43e-77 261
Msa0126880 AT1G08420.2 46.602 309 146 8 33 323 656 963 4.76e-77 261
Msa0126880 AT2G42500.2 49.321 221 110 2 108 327 33 252 6.85e-75 237
Msa0126880 AT1G03445.2 46.479 284 135 8 55 323 476 757 1.07e-74 251
Msa0126880 AT1G03445.1 46.479 284 135 8 55 323 476 757 1.48e-74 251
Msa0126880 AT2G42810.1 40.273 293 164 5 29 315 168 455 4.24e-67 224
Msa0126880 AT2G42810.5 40.273 293 164 5 29 315 168 455 4.24e-67 224
Msa0126880 AT2G42810.4 40.273 293 164 5 29 315 168 455 4.24e-67 224
Msa0126880 AT2G42810.3 40.273 293 164 5 29 315 221 508 7.31e-67 225
Msa0126880 AT2G42810.2 40.273 293 164 5 29 315 222 509 7.56e-67 225
Msa0126880 AT2G42500.4 44.910 167 81 4 35 197 14 173 2.07e-44 155
Msa0126880 AT2G42500.5 45.087 173 82 5 35 203 14 177 4.07e-44 154
Msa0126880 AT2G42500.3 46.541 159 74 4 35 189 14 165 7.12e-44 153
Msa0126880 AT5G63870.1 31.325 332 160 12 62 326 52 382 1.00e-33 132
Msa0126880 AT5G63870.2 31.325 332 160 12 62 326 52 382 1.00e-33 132
Msa0126880 AT5G63870.3 31.984 247 128 6 62 268 52 298 6.99e-28 113
Msa0126880 AT1G48120.1 29.897 291 144 7 67 297 635 925 1.88e-25 111
Msa0126880 AT5G10900.2 29.965 287 156 10 63 306 199 483 7.85e-23 102
Msa0126880 AT5G10900.3 29.965 287 156 10 63 306 199 483 9.23e-23 102
Msa0126880 AT5G10900.1 29.965 287 156 10 63 306 199 483 1.01e-22 102

Find 104 sgRNAs with CRISPR-Local

Find 720 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTCCTGACTTACATAATT+TGG 0.116324 1_3:+56001321 Msa0126880:CDS
TATCAGCTGGCTTTAATATT+TGG 0.125928 1_3:-56001995 None:intergenic
CTCACATAACTTCGGATTAT+TGG 0.154032 1_3:+56002420 Msa0126880:CDS
CTTGCAGCAACCTAATTTAT+TGG 0.157351 1_3:+55996720 Msa0126880:CDS
CGAAAGTATGAAGTTGATTT+TGG 0.175729 1_3:+56002830 Msa0126880:CDS
TCGAGTTCCATATGTTATTT+TGG 0.176354 1_3:+56002892 Msa0126880:CDS
AGAAAGCAAGGAAGAGATTA+TGG 0.211559 1_3:-56003003 None:intergenic
GTCAATATTCTGATCTTCTA+AGG 0.254833 1_3:+56000993 Msa0126880:CDS
GCTTCAAGCTCCAATAAATT+AGG 0.261678 1_3:-55996730 None:intergenic
GCTTCTATTAACCGTATATA+TGG 0.271123 1_3:+56001175 Msa0126880:CDS
ACTCTGTTGGACAATCATTA+AGG 0.284049 1_3:-55993714 None:intergenic
ATGCTCATACAATTGGTATA+TGG 0.299374 1_3:+56003116 Msa0126880:three_prime_UTR
ACACCTGCTGGAGAGTTTCC+TGG 0.299462 1_3:-56002059 None:intergenic
GTTTCTTCAGAAGCATGATT+TGG 0.317593 1_3:+56001495 Msa0126880:CDS
GAAGGTTCAATGTAAGGATA+TGG 0.319884 1_3:+56001218 Msa0126880:CDS
TACAATTCCAAAATAACATA+TGG 0.321372 1_3:-56002899 None:intergenic
AAATTACCACAAATCTTAAT+AGG 0.331310 1_3:-55996754 None:intergenic
AGAGATGGAACAAGCAGTTT+TGG 0.343273 1_3:+55996591 Msa0126880:intron
TCTTATTTGCCGTGCTCATC+AGG 0.350335 1_3:+56001519 Msa0126880:CDS
TCGCAAAGCAAACCTGTATC+AGG 0.371447 1_3:-56001379 None:intergenic
CAACCTTGAACTTCTTTGCT+AGG 0.376807 1_3:-56001418 None:intergenic
TATGTGAGAAATGGTTAATA+TGG 0.377805 1_3:-56002405 None:intergenic
GCTTCCTTGCAGTCCTTCCT+TGG 0.386217 1_3:+56002805 Msa0126880:intron
TAGTCGTGCAAGAAAGCATT+TGG 0.386899 1_3:+56002465 Msa0126880:CDS
ATTGATTCATCCAATGGCTT+TGG 0.389357 1_3:-56002554 None:intergenic
GACAGCTGAACCTGCTTCCC+TGG 0.395189 1_3:-55996652 None:intergenic
GTTTGCTTTGCGATCTCCTC+TGG 0.402187 1_3:+56001389 Msa0126880:CDS
CCGACTGATGTGCCTGATAC+AGG 0.405760 1_3:+56001367 Msa0126880:CDS
CATCATAAAATCCATATATA+CGG 0.411444 1_3:-56001186 None:intergenic
GAAGCACCTATTAAGATTTG+TGG 0.413609 1_3:+55996748 Msa0126880:CDS
ATATACATTTGGTGCTGATA+AGG 0.419606 1_3:+56001465 Msa0126880:CDS
TGCTCATACAATTGGTATAT+GGG 0.419628 1_3:+56003117 Msa0126880:three_prime_UTR
GGTTAATAGAAGCACATTCA+TGG 0.425951 1_3:-56001165 None:intergenic
ATCCGAAGTTATGTGAGAAA+TGG 0.428040 1_3:-56002414 None:intergenic
GATGAAAATGCTCATACAAT+TGG 0.429020 1_3:+56003109 Msa0126880:three_prime_UTR
TCAAACTCCCCACAGTAATT+AGG 0.429403 1_3:-56001924 None:intergenic
TAGCAAAGAAGTTCAAGGTT+GGG 0.430512 1_3:+56001420 Msa0126880:CDS
CTTCCTACCTTTACACCTGC+TGG 0.435417 1_3:-56002071 None:intergenic
AACCTTGAACTTCTTTGCTA+GGG 0.443540 1_3:-56001417 None:intergenic
AGTCGTGCAAGAAAGCATTT+GGG 0.444539 1_3:+56002466 Msa0126880:CDS
GATATGAGTTCTTTGCTAAC+CGG 0.448265 1_3:+56001877 Msa0126880:CDS
AAAATGGTTGCTGTCACAAC+TGG 0.449964 1_3:+56002855 Msa0126880:CDS
CTCTGTTGGACAATCATTAA+GGG 0.454536 1_3:-55993713 None:intergenic
GAAACAATTGATTCATCCAA+TGG 0.460426 1_3:-56002560 None:intergenic
AATGAAGCACCTAGTGCAAA+AGG 0.461348 1_3:+55993655 None:intergenic
GTAAAAGAAGGTTCAATGTA+AGG 0.466323 1_3:+56001212 Msa0126880:CDS
TGATCCAAATTATGTAAGTC+AGG 0.467364 1_3:-56001325 None:intergenic
AGGGGAGTGTCATATACATT+TGG 0.476024 1_3:+56001454 Msa0126880:CDS
GAAAGCAAGGAAGAGATTAT+GGG 0.478394 1_3:-56003002 None:intergenic
CTTGAAGTTCGTAGCCGTCC+AGG 0.490260 1_3:+55996634 Msa0126880:CDS
CTGGACGGCTACGAACTTCA+AGG 0.496906 1_3:-55996633 None:intergenic
TCGTAGCCGTCCAGGGAAGC+AGG 0.501536 1_3:+55996642 Msa0126880:CDS
TTTGACCAGGTGGTGGAGGA+TGG 0.504276 1_3:+56001855 Msa0126880:intron
GACCCTAGCAAAGAAGTTCA+AGG 0.508316 1_3:+56001415 Msa0126880:CDS
AGCAAAGAAGTTCAAGGTTG+GGG 0.509636 1_3:+56001421 Msa0126880:CDS
GCAGGTTCAGCTGTCGGAGA+CGG 0.516990 1_3:+55996660 Msa0126880:CDS
TCTGAAGCAGCCAAAGCCAT+TGG 0.518464 1_3:+56002544 Msa0126880:CDS
TTGGGTGATTATGTGGATCG+AGG 0.524951 1_3:+56001061 Msa0126880:CDS
AACCATTTCTCACATAACTT+CGG 0.526041 1_3:+56002412 Msa0126880:CDS
AAGGTTGGGGAATGAATGAC+AGG 0.526085 1_3:+56001434 Msa0126880:CDS
TTTATGATGAGTGTAAAAGA+AGG 0.531875 1_3:+56001200 Msa0126880:CDS
AAAATATTGTTACAAGCTGC+CGG 0.536379 1_3:-56001896 None:intergenic
AAACTCTCCAGCAGGTGTAA+AGG 0.539592 1_3:+56002064 Msa0126880:CDS
TGGGTGATTATGTGGATCGA+GGG 0.542417 1_3:+56001062 Msa0126880:CDS
TTTCGGCGCCTAATTACTGT+GGG 0.546628 1_3:+56001916 Msa0126880:CDS
TGGGTGGAAGTTGAGAATAA+AGG 0.546776 1_3:+56003136 Msa0126880:three_prime_UTR
TCATACTTTCGTACCAAGGA+AGG 0.549840 1_3:-56002818 None:intergenic
ATTAGTGTACAAAGAAAGCA+AGG 0.554941 1_3:-56003015 None:intergenic
TGGGGCATTGAATTTAGCAA+TGG 0.556455 1_3:+56002485 Msa0126880:CDS
GCACATCAGTCGGCCTCTGT+AGG 0.567167 1_3:-56001357 None:intergenic
AGAGTTTCCTGGTTTAGTAG+TGG 0.569550 1_3:-56002048 None:intergenic
GACACTAACCACCACTCTGT+TGG 0.571108 1_3:-55993727 None:intergenic
CCTGTATCAGGCACATCAGT+CGG 0.573201 1_3:-56001367 None:intergenic
TATGTCTACGAATGCTTGAG+AGG 0.575423 1_3:-56003064 None:intergenic
TCATCAATGAGGGCTGCCAC+AGG 0.577241 1_3:-56001271 None:intergenic
GTATGGTGGATTACCTCCTC+AGG 0.580103 1_3:+56001024 Msa0126880:CDS
AAACCAGGAAACTCTCCAGC+AGG 0.580760 1_3:+56002056 Msa0126880:CDS
CTAGCAAAGAAGTTCAAGGT+TGG 0.581376 1_3:+56001419 Msa0126880:CDS
TTGAAGTTCGTAGCCGTCCA+GGG 0.585517 1_3:+55996635 Msa0126880:CDS
TTTCTTTGTACACTAATACC+TGG 0.586760 1_3:+56003021 Msa0126880:CDS
AGGGAAGCAGGTTCAGCTGT+CGG 0.588957 1_3:+55996654 Msa0126880:CDS
AACAAGTAGTTGGCCTGAGG+AGG 0.589163 1_3:-56001037 None:intergenic
TTGCTTCAATTGCCTACCTG+TGG 0.593940 1_3:+56001255 Msa0126880:CDS
AACTTCATACTTTCGTACCA+AGG 0.594854 1_3:-56002822 None:intergenic
CTGTCACAACTGGTCAGCGA+AGG 0.613026 1_3:+56002865 Msa0126880:CDS
GTTCAATGTAAGGATATGGA+AGG 0.613524 1_3:+56001222 Msa0126880:CDS
CTTTGCTAGGGTCTGACCAG+AGG 0.615007 1_3:-56001405 None:intergenic
ATGGTCTACATAGTTCATGA+TGG 0.620287 1_3:-56002938 None:intergenic
ATGATTGTCCAACAGAGTGG+TGG 0.624227 1_3:+55993719 Msa0126880:CDS
TAAAACTCAGAACATATACC+AGG 0.631683 1_3:-56003039 None:intergenic
GCTGAACCTGCTTCCCTGGA+CGG 0.632476 1_3:-55996648 None:intergenic
CAATGAGGGCTGCCACAGGT+AGG 0.639222 1_3:-56001267 None:intergenic
AATGGAACAAGCTACATACA+TGG 0.640138 1_3:+56002503 Msa0126880:CDS
AGTACGACCACTACTAAACC+AGG 0.640553 1_3:+56002041 Msa0126880:CDS
AAAGTTTAACCTGATGAGCA+CGG 0.643579 1_3:-56001528 None:intergenic
TAGCAGTAGAACATAGCTGA+CGG 0.659481 1_3:-55996687 None:intergenic
GTCGTGCAAGAAAGCATTTG+GGG 0.664855 1_3:+56002467 Msa0126880:CDS
TGTGGGGAGTTTGACAACGC+TGG 0.676964 1_3:+56001933 Msa0126880:CDS
TCATACAATTGGTATATGGG+TGG 0.679238 1_3:+56003120 Msa0126880:three_prime_UTR
TTCGGCGCCTAATTACTGTG+GGG 0.690124 1_3:+56001917 Msa0126880:CDS
TTAATGATTGTCCAACAGAG+TGG 0.712982 1_3:+55993716 Msa0126880:CDS
AGGTTGGGGAATGAATGACA+GGG 0.722361 1_3:+56001435 Msa0126880:CDS
GGTTGGGGAATGAATGACAG+GGG 0.740649 1_3:+56001436 Msa0126880:CDS
ATCAGATTAGAAACCTACAG+AGG 0.757889 1_3:+56001344 Msa0126880:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAATAAAATAAAAGATAAA+GGG - chr1_3:55995575-55995594 None:intergenic 10.0%
!! AACAATAAAATAAAAGATAA+AGG - chr1_3:55995576-55995595 None:intergenic 10.0%
!!! AAAGATAAGAAAAATATTTT+TGG - chr1_3:55995923-55995942 None:intergenic 10.0%
!!! AACTTTTATTTATAATTTAG+AGG + chr1_3:55996061-55996080 Msa0126880:intron 10.0%
!!! ACTTTTATTTATAATTTAGA+GGG + chr1_3:55996062-55996081 Msa0126880:intron 10.0%
!!! TTTTTTTTTTTTTTATCTTC+GGG - chr1_3:55996191-55996210 None:intergenic 10.0%
!! ATGATAATAATTGAAATTAA+GGG - chr1_3:55996505-55996524 None:intergenic 10.0%
!! TATGATAATAATTGAAATTA+AGG - chr1_3:55996506-55996525 None:intergenic 10.0%
!!! TTTTTCTTATTGTATTATTT+CGG + chr1_3:55996876-55996895 Msa0126880:intron 10.0%
!! AAAATCCTTTAATTAAATTA+TGG + chr1_3:55998750-55998769 Msa0126880:intron 10.0%
!!! AAGAATTTTAAAAAAAGATA+AGG - chr1_3:56000050-56000069 None:intergenic 10.0%
!!! AATTTTATCATTTCAAATAA+TGG - chr1_3:56000207-56000226 None:intergenic 10.0%
!!! TGATTATAAAATTTTAGTTT+CGG + chr1_3:56000434-56000453 Msa0126880:intron 10.0%
!! TAGAAAGTAATTATTAAAAT+AGG + chr1_3:56002265-56002284 Msa0126880:intron 10.0%
!! AGAAAGTAATTATTAAAATA+GGG + chr1_3:56002266-56002285 Msa0126880:intron 10.0%
!! GTAAATAAAAATATTAAACA+TGG - chr1_3:56002733-56002752 None:intergenic 10.0%
!! AATTATCCTATTAGTAAAAT+TGG - chr1_3:55994856-55994875 None:intergenic 15.0%
!! AATAAAATAAAAGATAAAGG+GGG - chr1_3:55995573-55995592 None:intergenic 15.0%
!! CAATAAAATAAAAGATAAAG+GGG - chr1_3:55995574-55995593 None:intergenic 15.0%
!!! GATTTTTAATATTTTCAACA+GGG + chr1_3:55995752-55995771 Msa0126880:intron 15.0%
!!! AAATTGTCTTGTTTTTTTTA+GGG - chr1_3:55995822-55995841 None:intergenic 15.0%
!!! TAAATTGTCTTGTTTTTTTT+AGG - chr1_3:55995823-55995842 None:intergenic 15.0%
!!! GAAAAATATTTTTGGTATTT+TGG - chr1_3:55995915-55995934 None:intergenic 15.0%
!!! TTGATTTGATTGATTTAATT+AGG - chr1_3:55996251-55996270 None:intergenic 15.0%
!! CTCTTAATTTACATAATAAA+AGG - chr1_3:55998722-55998741 None:intergenic 15.0%
!!! CTTTTATTATGTAAATTAAG+AGG + chr1_3:55998720-55998739 Msa0126880:intron 15.0%
!! TTAAGAACGAAAATTAATTA+TGG + chr1_3:56000007-56000026 Msa0126880:intron 15.0%
!! TAAGAACGAAAATTAATTAT+GGG + chr1_3:56000008-56000027 Msa0126880:intron 15.0%
!!! TCTTTTTGAAATATCTTTTT+CGG + chr1_3:56000105-56000124 Msa0126880:intron 15.0%
!!! GATTATAAAATTTTAGTTTC+GGG + chr1_3:56000435-56000454 Msa0126880:intron 15.0%
!! GATAAAAATAAGTGTAAAAT+AGG + chr1_3:56000709-56000728 Msa0126880:intron 15.0%
!!! CTTTCATATTTTTTTTTTGA+AGG - chr1_3:56000759-56000778 None:intergenic 15.0%
!! CTTCAAAAAAAAAATATGAA+AGG + chr1_3:56000757-56000776 Msa0126880:intron 15.0%
!! GAAAGTAATTATTAAAATAG+GGG + chr1_3:56002267-56002286 Msa0126880:intron 15.0%
!!! AATAATGATGATGAAATGAT+TGG + chr1_3:55993862-55993881 Msa0126880:intron 20.0%
!!! ATAATGATGATGAAATGATT+GGG + chr1_3:55993863-55993882 Msa0126880:intron 20.0%
!! AAATACCATAAAAGTAATGA+AGG + chr1_3:55993976-55993995 Msa0126880:intron 20.0%
!! TGTATACGATGAATATTTAT+AGG + chr1_3:55994410-55994429 Msa0126880:intron 20.0%
!! TGAACTATATAAAAAGATCA+CGG - chr1_3:55994577-55994596 None:intergenic 20.0%
!!! TATATGCCAATTTTACTAAT+AGG + chr1_3:55994847-55994866 Msa0126880:intron 20.0%
!!! TTGGTAGTTCTTTTTTTTTT+TGG - chr1_3:55995136-55995155 None:intergenic 20.0%
!!! GGATTTTTAATATTTTCAAC+AGG + chr1_3:55995751-55995770 Msa0126880:intron 20.0%
!! ATTTATACCCTAAAAAAACA+AGG + chr1_3:55995777-55995796 Msa0126880:intron 20.0%
!!! TAAATTGCCTTGTTTTTTTA+GGG - chr1_3:55995787-55995806 None:intergenic 20.0%
!!! TTAAATTGCCTTGTTTTTTT+AGG - chr1_3:55995788-55995807 None:intergenic 20.0%
!! CAAATAAGTAAATCGTATAT+GGG - chr1_3:55996147-55996166 None:intergenic 20.0%
!! TCAAATAAGTAAATCGTATA+TGG - chr1_3:55996148-55996167 None:intergenic 20.0%
!! AAATTACCACAAATCTTAAT+AGG - chr1_3:55996757-55996776 None:intergenic 20.0%
!! GCTATTATTAGAAGAATAAA+AGG + chr1_3:55998511-55998530 Msa0126880:intron 20.0%
!! AAGTGCCATAATTTAATTAA+AGG - chr1_3:55998758-55998777 None:intergenic 20.0%
!! TTTATGTGATGAAAAAGATA+TGG + chr1_3:55998785-55998804 Msa0126880:intron 20.0%
!! ATGATGTTAGATTATCTAAA+TGG + chr1_3:55998815-55998834 Msa0126880:intron 20.0%
!! TGATGTTAGATTATCTAAAT+GGG + chr1_3:55998816-55998835 Msa0126880:intron 20.0%
!! TATAAAATAGATTTGATCTG+AGG + chr1_3:55999600-55999619 Msa0126880:intron 20.0%
!!! TTATACTATGTTTTTTGTAG+AGG + chr1_3:55999786-55999805 Msa0126880:intron 20.0%
!!! AATTTGCTAGTAAAATATGT+CGG - chr1_3:55999906-55999925 None:intergenic 20.0%
!! AAGAACGAAAATTAATTATG+GGG + chr1_3:56000009-56000028 Msa0126880:intron 20.0%
!! AATAGTAAAAAATAGGCAAT+AGG - chr1_3:56000549-56000568 None:intergenic 20.0%
!! TCTTGTCAATAGTAAAAAAT+AGG - chr1_3:56000556-56000575 None:intergenic 20.0%
!! TGGATTATGTTCATATAAAT+GGG - chr1_3:56000852-56000871 None:intergenic 20.0%
!!! ATGGATTATGTTCATATAAA+TGG - chr1_3:56000853-56000872 None:intergenic 20.0%
!!! TTATTTTATATGCTAAGAGA+AGG - chr1_3:56001111-56001130 None:intergenic 20.0%
!! CATCATAAAATCCATATATA+CGG - chr1_3:56001189-56001208 None:intergenic 20.0%
!!! AAAAAAACAAAGCTCAATTT+TGG + chr1_3:56002017-56002036 Msa0126880:CDS 20.0%
!! TACAATTCCAAAATAACATA+TGG - chr1_3:56002902-56002921 None:intergenic 20.0%
!!! TTTTGGAATTGTAAAAACAA+AGG + chr1_3:56002909-56002928 Msa0126880:CDS 20.0%
!!! TTTGGAATTGTAAAAACAAA+GGG + chr1_3:56002910-56002929 Msa0126880:CDS 20.0%
!! GAAAAGAAAATGAAGCTTTT+TGG + chr1_3:55993690-55993709 Msa0126880:CDS 25.0%
!!! AATCATTGTTTCTGAAAATG+AGG + chr1_3:55993937-55993956 Msa0126880:intron 25.0%
!!! ACTTTCCTTCATTACTTTTA+TGG - chr1_3:55993984-55994003 None:intergenic 25.0%
!!! TAACATTGACTTGTTTGATT+AGG - chr1_3:55994057-55994076 None:intergenic 25.0%
! TAATCAAACAAGTCAATGTT+AGG + chr1_3:55994056-55994075 Msa0126880:intron 25.0%
! AATCAAACAAGTCAATGTTA+GGG + chr1_3:55994057-55994076 Msa0126880:intron 25.0%
! ATCATTTATGATGCCTAATA+TGG + chr1_3:55994088-55994107 Msa0126880:intron 25.0%
! TTGAAAATGGACCTAAAATT+GGG + chr1_3:55994145-55994164 Msa0126880:intron 25.0%
!! GGATTTTTGCTAATTTTGTA+AGG - chr1_3:55994219-55994238 None:intergenic 25.0%
! ACTCTTTATACCAAAATATC+AGG + chr1_3:55994261-55994280 Msa0126880:intron 25.0%
! ATTGGCATATATGTGATTTA+AGG - chr1_3:55994838-55994857 None:intergenic 25.0%
! TGATCTAAATTGAGTTTATG+CGG - chr1_3:55994905-55994924 None:intergenic 25.0%
! ATTATAAACTCACAGAAAAG+TGG - chr1_3:55995090-55995109 None:intergenic 25.0%
!! ACTTTTCTGTGAGTTTATAA+TGG + chr1_3:55995089-55995108 Msa0126880:intron 25.0%
! TGATCTACTTATAAGATTCA+TGG + chr1_3:55995170-55995189 Msa0126880:intron 25.0%
!! CTTATAAGATTCATGGATTA+AGG + chr1_3:55995177-55995196 Msa0126880:intron 25.0%
! TTTGTAAGGATTATTAGTGT+GGG - chr1_3:55995275-55995294 None:intergenic 25.0%
!!! GCAATTCACGTTTTTTATTA+AGG - chr1_3:55995619-55995638 None:intergenic 25.0%
! TCTACTTACACTTTATTACT+TGG + chr1_3:55995673-55995692 Msa0126880:intron 25.0%
!! TGATTGATTTAATTAGGTCA+CGG - chr1_3:55996245-55996264 None:intergenic 25.0%
!! TTATCATATGACATTTTGCT+TGG + chr1_3:55996851-55996870 Msa0126880:intron 25.0%
! CATACACAAAACTTAAATCA+CGG - chr1_3:55996929-55996948 None:intergenic 25.0%
!!! TTTTCAATGAGTTTTGATTG+TGG + chr1_3:55997497-55997516 Msa0126880:intron 25.0%
!!! TTTCAATGAGTTTTGATTGT+GGG + chr1_3:55997498-55997517 Msa0126880:intron 25.0%
! AGAAGTAAGTAAAATAGTAC+AGG + chr1_3:55998409-55998428 Msa0126880:intron 25.0%
! GAAGTAAGTAAAATAGTACA+GGG + chr1_3:55998410-55998429 Msa0126880:intron 25.0%
! AGGTATTAACGATATTTACT+TGG + chr1_3:55998531-55998550 Msa0126880:intron 25.0%
!! GGAAAAGCATAAAAAGAAAA+AGG - chr1_3:55999008-55999027 None:intergenic 25.0%
!! TCTAATTAGCTTCAATTCAA+TGG - chr1_3:55999029-55999048 None:intergenic 25.0%
!!! ATGTTCTGTTTCTGAATATT+GGG + chr1_3:55999206-55999225 Msa0126880:intron 25.0%
!! TAGAGAATTTTTCCTTGAAA+TGG + chr1_3:55999317-55999336 Msa0126880:intron 25.0%
! GACGATATTAAAGAAGAATT+GGG - chr1_3:55999633-55999652 None:intergenic 25.0%
! AGACGATATTAAAGAAGAAT+TGG - chr1_3:55999634-55999653 None:intergenic 25.0%
! GAAAATTAATTATGGGGTAT+TGG + chr1_3:56000015-56000034 Msa0126880:intron 25.0%
! TTTAATTACATGTTACCCTT+TGG + chr1_3:56000337-56000356 Msa0126880:intron 25.0%
! AACTCAAAATGATATCCAAA+GGG - chr1_3:56000355-56000374 None:intergenic 25.0%
! AAACTCAAAATGATATCCAA+AGG - chr1_3:56000356-56000375 None:intergenic 25.0%
! TTGAGTTTAAACTAGCAAAT+AGG + chr1_3:56000368-56000387 Msa0126880:intron 25.0%
!! CATTCATAAGTAACTTTTCA+AGG + chr1_3:56000404-56000423 Msa0126880:intron 25.0%
!!! TAAAATTTTAGTTTCGGGAA+TGG + chr1_3:56000440-56000459 Msa0126880:intron 25.0%
!!! TTTGAAGTATTGCTAATAGA+AGG + chr1_3:56000463-56000482 Msa0126880:intron 25.0%
! TGTTCATATAAATGGGTAAA+TGG - chr1_3:56000845-56000864 None:intergenic 25.0%
!! ATGTGGTAATGATAATAACA+AGG - chr1_3:56000886-56000905 None:intergenic 25.0%
! TATCATTACCACATCATATT+TGG + chr1_3:56000892-56000911 Msa0126880:intron 25.0%
! TCTTAAATCCAAATATGATG+TGG - chr1_3:56000903-56000922 None:intergenic 25.0%
!!! TATCCTTTTGTTGATTTTTC+AGG + chr1_3:56000959-56000978 Msa0126880:intron 25.0%
!!! CTGAGAATTTTTTTCTTTTG+CGG + chr1_3:56001137-56001156 Msa0126880:CDS 25.0%
!!! TGAGAATTTTTTTCTTTTGC+GGG + chr1_3:56001138-56001157 Msa0126880:CDS 25.0%
! TTTATGATGAGTGTAAAAGA+AGG + chr1_3:56001200-56001219 Msa0126880:CDS 25.0%
!! CAAAATCTTTTCATCAATGA+GGG - chr1_3:56001284-56001303 None:intergenic 25.0%
!! ACAAAATCTTTTCATCAATG+AGG - chr1_3:56001285-56001304 None:intergenic 25.0%
!! ATTTTCATATCACAGAAATG+GGG - chr1_3:56001603-56001622 None:intergenic 25.0%
!! CATTTTCATATCACAGAAAT+GGG - chr1_3:56001604-56001623 None:intergenic 25.0%
!! TCATTTTCATATCACAGAAA+TGG - chr1_3:56001605-56001624 None:intergenic 25.0%
! TATGTGAGAAATGGTTAATA+TGG - chr1_3:56002408-56002427 None:intergenic 25.0%
! AATAACCTAGATTAAGTGAT+TGG - chr1_3:56002684-56002703 None:intergenic 25.0%
! TTTGTAACAGTGAAAAACAA+TGG - chr1_3:56002960-56002979 None:intergenic 25.0%
! ATGTATATTCCTTTTGCACT+AGG - chr1_3:55993667-55993686 None:intergenic 30.0%
! GTTTCTGAAAATGAGGAAAT+AGG + chr1_3:55993944-55993963 Msa0126880:intron 30.0%
! TTCCTTTGTTTGACCATATT+AGG - chr1_3:55994104-55994123 None:intergenic 30.0%
AAAGGAAGTAACAAAACACA+TGG + chr1_3:55994117-55994136 Msa0126880:intron 30.0%
ACACATGGAAAACTTGAAAA+TGG + chr1_3:55994132-55994151 Msa0126880:intron 30.0%
CTTGAAAATGGACCTAAAAT+TGG + chr1_3:55994144-55994163 Msa0126880:intron 30.0%
TGGTATAAAGAGTTGTTAGT+TGG - chr1_3:55994254-55994273 None:intergenic 30.0%
AAGACTGAAACTATCAATGA+TGG + chr1_3:55994331-55994350 Msa0126880:intron 30.0%
! GGTTAAGATTTTGCAAGTTA+TGG + chr1_3:55994352-55994371 Msa0126880:intron 30.0%
! AACTTTTCCTACTAGACAAA+TGG + chr1_3:55994436-55994455 Msa0126880:intron 30.0%
!!! GTAAGTTTTTTCCTCATTGA+AGG + chr1_3:55994507-55994526 Msa0126880:intron 30.0%
AAAAAGATCACGGTTCAAAA+TGG - chr1_3:55994567-55994586 None:intergenic 30.0%
TGTAGCACACTTAATCAAAA+GGG - chr1_3:55994642-55994661 None:intergenic 30.0%
TTGTAGCACACTTAATCAAA+AGG - chr1_3:55994643-55994662 None:intergenic 30.0%
GATTAAGTGTGCTACAAATA+TGG + chr1_3:55994646-55994665 Msa0126880:intron 30.0%
CAATTGAATTGGTCAAAACT+CGG - chr1_3:55994705-55994724 None:intergenic 30.0%
CAATTCAATTGAACTTGAGA+CGG + chr1_3:55994714-55994733 Msa0126880:intron 30.0%
!! TTTTTGGTAGATAGACGAAA+TGG - chr1_3:55995120-55995139 None:intergenic 30.0%
TTTCCTAAATTGTCGTCTAA+AGG - chr1_3:55995207-55995226 None:intergenic 30.0%
TTGTAAGGATTATTAGTGTG+GGG - chr1_3:55995274-55995293 None:intergenic 30.0%
CTTTGTAAGGATTATTAGTG+TGG - chr1_3:55995276-55995295 None:intergenic 30.0%
CACACTAATAATCCTTACAA+AGG + chr1_3:55995274-55995293 Msa0126880:intron 30.0%
CATTTAAGTGATGAGTTCAT+GGG - chr1_3:55995399-55995418 None:intergenic 30.0%
TCATTTAAGTGATGAGTTCA+TGG - chr1_3:55995400-55995419 None:intergenic 30.0%
CAATGGTTAAGCATTAATCA+TGG - chr1_3:55995439-55995458 None:intergenic 30.0%
CATTCGTTGAAGTTAAACAA+TGG - chr1_3:55995456-55995475 None:intergenic 30.0%
TAACTTCAACGAATGATTAG+AGG + chr1_3:55995461-55995480 Msa0126880:intron 30.0%
AACTTCAACGAATGATTAGA+GGG + chr1_3:55995462-55995481 Msa0126880:intron 30.0%
!! TTTTGATTGCAGAATGTTAG+CGG - chr1_3:55995508-55995527 None:intergenic 30.0%
CAAAACATATGGTTGGATTT+AGG - chr1_3:55995717-55995736 None:intergenic 30.0%
ATATTAAAAATCCCCGACAA+TGG - chr1_3:55995744-55995763 None:intergenic 30.0%
!!! GGTTTCATTTGGTTTTTGTT+GGG - chr1_3:55996309-55996328 None:intergenic 30.0%
ATGATTTCGTGTTTCAACAT+GGG + chr1_3:55996813-55996832 Msa0126880:intron 30.0%
! TCTTTTCTTTTCTCTGTATC+AGG + chr1_3:55997010-55997029 Msa0126880:intron 30.0%
TAAACACTTGTGTTGTAGTA+AGG - chr1_3:55997589-55997608 None:intergenic 30.0%
TCTTTCCAACCATGAAAAAT+CGG - chr1_3:55997644-55997663 None:intergenic 30.0%
TGAACAAGTCAAATAACACA+GGG - chr1_3:55997936-55997955 None:intergenic 30.0%
ATGAACAAGTCAAATAACAC+AGG - chr1_3:55997937-55997956 None:intergenic 30.0%
CTGGAATCAGTTGTATAAAA+AGG + chr1_3:55998383-55998402 Msa0126880:intron 30.0%
ATTCCTTTATCTTGAGTTTG+TGG + chr1_3:55998471-55998490 Msa0126880:intron 30.0%
TTCCTTTATCTTGAGTTTGT+GGG + chr1_3:55998472-55998491 Msa0126880:intron 30.0%
TTACAAGTTAGTTAGAGAAG+TGG + chr1_3:55998554-55998573 Msa0126880:intron 30.0%
CATAATAAAAGGTCACATCA+AGG - chr1_3:55998711-55998730 None:intergenic 30.0%
!!! ATTTTGACTGAAGATAGAGA+AGG - chr1_3:55998969-55998988 None:intergenic 30.0%
!!! TGTTATTTTTCAGCTACAGA+GGG + chr1_3:55999072-55999091 Msa0126880:intron 30.0%
!!! CTCCTTTATCTTTTAAGTTC+CGG + chr1_3:55999123-55999142 Msa0126880:intron 30.0%
AACCGGAACTTAAAAGATAA+AGG - chr1_3:55999128-55999147 None:intergenic 30.0%
ACCAATTTACTGTCACATTT+GGG - chr1_3:55999165-55999184 None:intergenic 30.0%
TACCAATTTACTGTCACATT+TGG - chr1_3:55999166-55999185 None:intergenic 30.0%
!! GATGTTCTGTTTCTGAATAT+TGG + chr1_3:55999205-55999224 Msa0126880:intron 30.0%
ATTTCAAGCATTCCATTTCA+AGG - chr1_3:55999332-55999351 None:intergenic 30.0%
!! TAGTGTTTTGTTGAGATTGA+AGG + chr1_3:55999370-55999389 Msa0126880:intron 30.0%
AACAAATATGACCCATTTCA+AGG - chr1_3:55999422-55999441 None:intergenic 30.0%
! ATGGGTCATATTTGTTAAAC+TGG + chr1_3:55999426-55999445 Msa0126880:intron 30.0%
! TGTCAAAACAATTTTGCTCA+AGG - chr1_3:55999563-55999582 None:intergenic 30.0%
ATTGTTACTCTTAGATTCCA+AGG + chr1_3:55999710-55999729 Msa0126880:intron 30.0%
! CATGTTTGAAGTTTAAACCT+TGG - chr1_3:55999730-55999749 None:intergenic 30.0%
TATAAAAACCTAGTTGACCA+TGG - chr1_3:55999771-55999790 None:intergenic 30.0%
AGTTGTTAAAAGCCTAACAT+TGG + chr1_3:55999837-55999856 Msa0126880:intron 30.0%
AAGTTATCTCATCCAATGTT+AGG - chr1_3:55999852-55999871 None:intergenic 30.0%
CAAATTAGCAATGACCAAAT+AGG + chr1_3:55999920-55999939 Msa0126880:intron 30.0%
!!! TTACAATTTTAGGGCCAAAA+CGG - chr1_3:56000245-56000264 None:intergenic 30.0%
! GACAACACCTTACAATTTTA+GGG - chr1_3:56000254-56000273 None:intergenic 30.0%
! TGACAACACCTTACAATTTT+AGG - chr1_3:56000255-56000274 None:intergenic 30.0%
AGTTTAAACTAGCAAATAGG+AGG + chr1_3:56000371-56000390 Msa0126880:intron 30.0%
GTTTAAACTAGCAAATAGGA+GGG + chr1_3:56000372-56000391 Msa0126880:intron 30.0%
AAGCAACCTTTCATATTGTT+GGG - chr1_3:56000736-56000755 None:intergenic 30.0%
ATAACAAGGACTTCAATAGA+TGG - chr1_3:56000872-56000891 None:intergenic 30.0%
GTCAATATTCTGATCTTCTA+AGG + chr1_3:56000993-56001012 Msa0126880:CDS 30.0%
CGCAAAAGAAAAAAATTCTC+AGG - chr1_3:56001139-56001158 None:intergenic 30.0%
!!! GAGAATTTTTTTCTTTTGCG+GGG + chr1_3:56001139-56001158 Msa0126880:CDS 30.0%
GCTTCTATTAACCGTATATA+TGG + chr1_3:56001175-56001194 Msa0126880:CDS 30.0%
GTAAAAGAAGGTTCAATGTA+AGG + chr1_3:56001212-56001231 Msa0126880:CDS 30.0%
TTCTCCTGACTTACATAATT+TGG + chr1_3:56001321-56001340 Msa0126880:CDS 30.0%
TGATCCAAATTATGTAAGTC+AGG - chr1_3:56001328-56001347 None:intergenic 30.0%
!! ATATACATTTGGTGCTGATA+AGG + chr1_3:56001465-56001484 Msa0126880:CDS 30.0%
CATCATAAACAGCTGATAAA+TGG - chr1_3:56001749-56001768 None:intergenic 30.0%
! TGCATAATTATCTTTTGACC+AGG + chr1_3:56001842-56001861 Msa0126880:intron 30.0%
! ATAATTATCTTTTGACCAGG+TGG + chr1_3:56001845-56001864 Msa0126880:intron 30.0%
AAAATATTGTTACAAGCTGC+CGG - chr1_3:56001899-56001918 None:intergenic 30.0%
! GCAGCTTGTAACAATATTTT+CGG + chr1_3:56001899-56001918 Msa0126880:CDS 30.0%
!! TATCAGCTGGCTTTAATATT+TGG - chr1_3:56001998-56002017 None:intergenic 30.0%
!!! AGCTTTGTTTTTTTATCAGC+TGG - chr1_3:56002011-56002030 None:intergenic 30.0%
AGAGAGAAAAAGAATCAAGA+CGG - chr1_3:56002154-56002173 None:intergenic 30.0%
!! ATGATCATGCTTCTAGAATT+TGG + chr1_3:56002235-56002254 Msa0126880:intron 30.0%
AATAGATCACAGAACAGAAA+AGG - chr1_3:56002347-56002366 None:intergenic 30.0%
AACCATTTCTCACATAACTT+CGG + chr1_3:56002412-56002431 Msa0126880:CDS 30.0%
! GAAACAATTGATTCATCCAA+TGG - chr1_3:56002563-56002582 None:intergenic 30.0%
CATTTCCAATCACTTAATCT+AGG + chr1_3:56002676-56002695 Msa0126880:intron 30.0%
!! CGAAAGTATGAAGTTGATTT+TGG + chr1_3:56002830-56002849 Msa0126880:CDS 30.0%
!! TCGAGTTCCATATGTTATTT+TGG + chr1_3:56002892-56002911 Msa0126880:CDS 30.0%
ATTAGTGTACAAAGAAAGCA+AGG - chr1_3:56003018-56003037 None:intergenic 30.0%
TTTCTTTGTACACTAATACC+TGG + chr1_3:56003021-56003040 Msa0126880:CDS 30.0%
TAAAACTCAGAACATATACC+AGG - chr1_3:56003042-56003061 None:intergenic 30.0%
GATGAAAATGCTCATACAAT+TGG + chr1_3:56003109-56003128 Msa0126880:three_prime_UTR 30.0%
ATGCTCATACAATTGGTATA+TGG + chr1_3:56003116-56003135 Msa0126880:three_prime_UTR 30.0%
TGCTCATACAATTGGTATAT+GGG + chr1_3:56003117-56003136 Msa0126880:three_prime_UTR 30.0%
CTCTGTTGGACAATCATTAA+GGG - chr1_3:55993716-55993735 None:intergenic 35.0%
ACTCTGTTGGACAATCATTA+AGG - chr1_3:55993717-55993736 None:intergenic 35.0%
TTAATGATTGTCCAACAGAG+TGG + chr1_3:55993716-55993735 Msa0126880:CDS 35.0%
ATGAAATGATTGGGAAGATC+TGG + chr1_3:55993872-55993891 Msa0126880:intron 35.0%
!!! GGGAAGATCTGGTTTTTTAT+TGG + chr1_3:55993883-55993902 Msa0126880:intron 35.0%
TACTGCCTTTGATATAAGTC+TGG - chr1_3:55994023-55994042 None:intergenic 35.0%
ATCAAAGGCAGTAAAACGAT+CGG + chr1_3:55994030-55994049 Msa0126880:intron 35.0%
TGCCTAATATGGTCAAACAA+AGG + chr1_3:55994099-55994118 Msa0126880:intron 35.0%
GTTAGTTGGACTTGAATCAT+GGG - chr1_3:55994240-55994259 None:intergenic 35.0%
TGTTAGTTGGACTTGAATCA+TGG - chr1_3:55994241-55994260 None:intergenic 35.0%
! GTGCTCTTTTCCTGATATTT+TGG - chr1_3:55994274-55994293 None:intergenic 35.0%
TTCCTCATTGAAGGATTATG+TGG + chr1_3:55994516-55994535 Msa0126880:intron 35.0%
TAGCACACTTAATCAAAAGG+GGG - chr1_3:55994640-55994659 None:intergenic 35.0%
GTAGCACACTTAATCAAAAG+GGG - chr1_3:55994641-55994660 None:intergenic 35.0%
TACAAATATGGAACACACGT+TGG + chr1_3:55994658-55994677 Msa0126880:intron 35.0%
CGTCTCAAGTTCAATTGAAT+TGG - chr1_3:55994716-55994735 None:intergenic 35.0%
GCGATATTACAATCGAACAA+AGG - chr1_3:55994777-55994796 None:intergenic 35.0%
TCGTCTAACCTGATATTGAT+TGG + chr1_3:55994797-55994816 Msa0126880:intron 35.0%
! CGTCTAACCTGATATTGATT+GGG + chr1_3:55994798-55994817 Msa0126880:intron 35.0%
! GTCTAACCTGATATTGATTG+GGG + chr1_3:55994799-55994818 Msa0126880:intron 35.0%
! TCTAACCTGATATTGATTGG+GGG + chr1_3:55994800-55994819 Msa0126880:intron 35.0%
! TTGATAATTCTACAAGGCGT+AGG - chr1_3:55994981-55995000 None:intergenic 35.0%
! CCTCTCTTGATAATTCTACA+AGG - chr1_3:55994987-55995006 None:intergenic 35.0%
CCTTGTAGAATTATCAAGAG+AGG + chr1_3:55994984-55995003 Msa0126880:intron 35.0%
GGCAAAATGCCAAAATTGTT+AGG + chr1_3:55995028-55995047 Msa0126880:intron 35.0%
ATAAACTCACAGAAAAGTGG+AGG - chr1_3:55995087-55995106 None:intergenic 35.0%
GAACCTTTAGACGACAATTT+AGG + chr1_3:55995201-55995220 Msa0126880:intron 35.0%
ATAGGGTCATCAATCCTATA+GGG - chr1_3:55995308-55995327 None:intergenic 35.0%
TATAGGGTCATCAATCCTAT+AGG - chr1_3:55995309-55995328 None:intergenic 35.0%
AAAAACGTGAATTGCCTAGT+TGG + chr1_3:55995624-55995643 Msa0126880:intron 35.0%
TGATTTAATTAGGTCACGGA+AGG - chr1_3:55996241-55996260 None:intergenic 35.0%
TTCGTTTCAGTGGAATGAAA+GGG - chr1_3:55996278-55996297 None:intergenic 35.0%
TTTCGTTTCAGTGGAATGAA+AGG - chr1_3:55996279-55996298 None:intergenic 35.0%
!!! CATTTGGTTTTTGTTGGGAA+GGG - chr1_3:55996304-55996323 None:intergenic 35.0%
!!! TCATTTGGTTTTTGTTGGGA+AGG - chr1_3:55996305-55996324 None:intergenic 35.0%
!!! GGGTTTCATTTGGTTTTTGT+TGG - chr1_3:55996310-55996329 None:intergenic 35.0%
! AGTTTGCTTTGGGTTTCATT+TGG - chr1_3:55996320-55996339 None:intergenic 35.0%
! GTTTACGGAGTCAGAATTTT+GGG - chr1_3:55996350-55996369 None:intergenic 35.0%
GGTATAAAATCGAAGAAGAG+TGG - chr1_3:55996484-55996503 None:intergenic 35.0%
! TTGTTTGTGTTTTGCAGAGA+TGG + chr1_3:55996576-55996595 Msa0126880:intron 35.0%
CTTGCAGCAACCTAATTTAT+TGG + chr1_3:55996720-55996739 Msa0126880:CDS 35.0%
GCTTCAAGCTCCAATAAATT+AGG - chr1_3:55996733-55996752 None:intergenic 35.0%
! GAAGCACCTATTAAGATTTG+TGG + chr1_3:55996748-55996767 Msa0126880:CDS 35.0%
CATGATTTCGTGTTTCAACA+TGG + chr1_3:55996812-55996831 Msa0126880:intron 35.0%
! TTCGGTATTTTGTACATGTC+TGG + chr1_3:55996894-55996913 Msa0126880:intron 35.0%
AGTGTCTTAGTGAAGTTTGT+GGG + chr1_3:55996959-55996978 Msa0126880:intron 35.0%
TGCTTTGATAAGTTGCTAGT+TGG + chr1_3:55997057-55997076 Msa0126880:intron 35.0%
TAAACCTCAGTTGTCAATAG+CGG + chr1_3:55997235-55997254 Msa0126880:intron 35.0%
ATCACTGGGATAAACATGTT+GGG + chr1_3:55997331-55997350 Msa0126880:intron 35.0%
ACAACACAAGTGTTTATCGA+TGG + chr1_3:55997593-55997612 Msa0126880:intron 35.0%
! CAACCATGAAAAATCGGTTT+AGG - chr1_3:55997638-55997657 None:intergenic 35.0%
!! CTAAACCGATTTTTCATGGT+TGG + chr1_3:55997636-55997655 Msa0126880:intron 35.0%
TCTTACTTCCTATGTCAAGT+AGG + chr1_3:55997669-55997688 Msa0126880:intron 35.0%
TCATCTCCATATTCTTGGAA+AGG - chr1_3:55997851-55997870 None:intergenic 35.0%
TTCTCTCATCTCCATATTCT+TGG - chr1_3:55997856-55997875 None:intergenic 35.0%
GAATATGGAGATGAGAGAAA+TGG + chr1_3:55997857-55997876 Msa0126880:intron 35.0%
AGGAAGGATCAAATTCTGTA+AGG + chr1_3:55997880-55997899 Msa0126880:intron 35.0%
GAACAAGTCAAATAACACAG+GGG - chr1_3:55997935-55997954 None:intergenic 35.0%
TGCAAAGCTAAAATCTGTGT+TGG - chr1_3:55998046-55998065 None:intergenic 35.0%
GATGAAGTTCCAGATTTCAA+AGG + chr1_3:55998358-55998377 Msa0126880:intron 35.0%
!! ATTCCAGATCCTTTGAAATC+TGG - chr1_3:55998370-55998389 None:intergenic 35.0%
TCAAGATAAAGGAATCCTTC+AGG - chr1_3:55998466-55998485 None:intergenic 35.0%
!! AAGGTGAAAGTATTTGTGGT+TGG - chr1_3:55998692-55998711 None:intergenic 35.0%
!! CATCAAGGTGAAAGTATTTG+TGG - chr1_3:55998696-55998715 None:intergenic 35.0%
TTAGATTATCTAAATGGGCG+AGG + chr1_3:55998821-55998840 Msa0126880:intron 35.0%
! TGGTCAATTGATTTCACCTT+GGG - chr1_3:55998870-55998889 None:intergenic 35.0%
! AGATAGAGAAGGCATGAAAA+GGG - chr1_3:55998958-55998977 None:intergenic 35.0%
! AAGATAGAGAAGGCATGAAA+AGG - chr1_3:55998959-55998978 None:intergenic 35.0%
! CCATGTTTTGTGTATGTGTT+CGG + chr1_3:55999049-55999068 Msa0126880:intron 35.0%
!!! GTGTTATTTTTCAGCTACAG+AGG + chr1_3:55999071-55999090 Msa0126880:intron 35.0%
ATGTGACAGTAAATTGGTAC+AGG + chr1_3:55999167-55999186 Msa0126880:intron 35.0%
CAAGAGAAGTTGTGTGAAAT+TGG + chr1_3:55999290-55999309 Msa0126880:intron 35.0%
! TGTTTCAAGTGTCCTTGAAA+TGG + chr1_3:55999407-55999426 Msa0126880:intron 35.0%
! GTTTCAAGTGTCCTTGAAAT+GGG + chr1_3:55999408-55999427 Msa0126880:intron 35.0%
TGAACAACTGGGAAAAATGA+TGG + chr1_3:55999686-55999705 Msa0126880:intron 35.0%
TTGCTAGTAAAATATGTCGG+CGG - chr1_3:55999903-55999922 None:intergenic 35.0%
AGTTTCACTATACGCCTATT+TGG - chr1_3:55999937-55999956 None:intergenic 35.0%
! CATCTAGACTGATTCAACTT+TGG - chr1_3:55999974-55999993 None:intergenic 35.0%
CAAAGTTGAATCAGTCTAGA+TGG + chr1_3:55999972-55999991 Msa0126880:intron 35.0%
!! GTTTTGGCCCTAAAATTGTA+AGG + chr1_3:56000244-56000263 Msa0126880:intron 35.0%
! TCAAATCTGAAACTTGCTCA+AGG + chr1_3:56000577-56000596 Msa0126880:intron 35.0%
! CAAATCTGAAACTTGCTCAA+GGG + chr1_3:56000578-56000597 Msa0126880:intron 35.0%
! AAATCTGAAACTTGCTCAAG+GGG + chr1_3:56000579-56000598 Msa0126880:intron 35.0%
ATAGGACCCAACAATATGAA+AGG + chr1_3:56000727-56000746 Msa0126880:intron 35.0%
GAAGCAACCTTTCATATTGT+TGG - chr1_3:56000737-56000756 None:intergenic 35.0%
ATCTGATATATCCTTGTGCA+CGG + chr1_3:56000788-56000807 Msa0126880:intron 35.0%
TCGCCTGAAAAATCAACAAA+AGG - chr1_3:56000965-56000984 None:intergenic 35.0%
!!! CTTCTAAGGCTTTTTGAGTA+TGG + chr1_3:56001007-56001026 Msa0126880:CDS 35.0%
ATCACCCAAAAACAAGTAGT+TGG - chr1_3:56001050-56001069 None:intergenic 35.0%
!!! CTTGTTTTTGGGTGATTATG+TGG + chr1_3:56001054-56001073 Msa0126880:CDS 35.0%
! GGTTAATAGAAGCACATTCA+TGG - chr1_3:56001168-56001187 None:intergenic 35.0%
GAAGGTTCAATGTAAGGATA+TGG + chr1_3:56001218-56001237 Msa0126880:CDS 35.0%
GTTCAATGTAAGGATATGGA+AGG + chr1_3:56001222-56001241 Msa0126880:CDS 35.0%
! GAAAAGATTTTGTGCATGCA+TGG + chr1_3:56001292-56001311 Msa0126880:CDS 35.0%
ATCAGATTAGAAACCTACAG+AGG + chr1_3:56001344-56001363 Msa0126880:CDS 35.0%
AACCTTGAACTTCTTTGCTA+GGG - chr1_3:56001420-56001439 None:intergenic 35.0%
TAGCAAAGAAGTTCAAGGTT+GGG + chr1_3:56001420-56001439 Msa0126880:CDS 35.0%
! GTTTCTTCAGAAGCATGATT+TGG + chr1_3:56001495-56001514 Msa0126880:CDS 35.0%
AAAGTTTAACCTGATGAGCA+CGG - chr1_3:56001531-56001550 None:intergenic 35.0%
! TCAGGTTAAACTTTTGCCTT+TGG + chr1_3:56001537-56001556 Msa0126880:intron 35.0%
AGCAACATATTGAGAACCAA+AGG - chr1_3:56001556-56001575 None:intergenic 35.0%
!! TTTGGTTCTCAATATGTTGC+TGG + chr1_3:56001555-56001574 Msa0126880:intron 35.0%
! TTGGTTCTCAATATGTTGCT+GGG + chr1_3:56001556-56001575 Msa0126880:intron 35.0%
CAATCCTAATCTTTCTCTCA+GGG + chr1_3:56001638-56001657 Msa0126880:intron 35.0%
! AGCTGATAAATGGACTTGAA+CGG - chr1_3:56001739-56001758 None:intergenic 35.0%
GATATGAGTTCTTTGCTAAC+CGG + chr1_3:56001877-56001896 Msa0126880:CDS 35.0%
! GATTCTTTTTCTCTCTGTCT+TGG + chr1_3:56002158-56002177 Msa0126880:intron 35.0%
TATCACAACAACGCAGAATT+TGG + chr1_3:56002292-56002311 Msa0126880:intron 35.0%
ATCCGAAGTTATGTGAGAAA+TGG - chr1_3:56002417-56002436 None:intergenic 35.0%
CTCACATAACTTCGGATTAT+TGG + chr1_3:56002420-56002439 Msa0126880:CDS 35.0%
AATGGAACAAGCTACATACA+TGG + chr1_3:56002503-56002522 Msa0126880:CDS 35.0%
! ATTGATTCATCCAATGGCTT+TGG - chr1_3:56002557-56002576 None:intergenic 35.0%
AACTTCATACTTTCGTACCA+AGG - chr1_3:56002825-56002844 None:intergenic 35.0%
!! GAAGTTGATTTTGGCGAAAA+TGG + chr1_3:56002839-56002858 Msa0126880:CDS 35.0%
ATGGTCTACATAGTTCATGA+TGG - chr1_3:56002941-56002960 None:intergenic 35.0%
GAAAGCAAGGAAGAGATTAT+GGG - chr1_3:56003005-56003024 None:intergenic 35.0%
AGAAAGCAAGGAAGAGATTA+TGG - chr1_3:56003006-56003025 None:intergenic 35.0%
TCATACAATTGGTATATGGG+TGG + chr1_3:56003120-56003139 Msa0126880:three_prime_UTR 35.0%
TCGAATTTCCTCTCCATGTT+GGG - chr1_3:55993762-55993781 None:intergenic 40.0%
GAGGTCCAGACTTATATCAA+AGG + chr1_3:55994015-55994034 Msa0126880:intron 40.0%
!! CGACTGGTGGGTTAAAATAA+TGG + chr1_3:55994168-55994187 Msa0126880:intron 40.0%
TTCCTACTAGACAAATGGCA+TGG + chr1_3:55994441-55994460 Msa0126880:intron 40.0%
! TACCATGCCATTTGTCTAGT+AGG - chr1_3:55994446-55994465 None:intergenic 40.0%
! CCTTGCTCGACTTTTTATGT+GGG + chr1_3:55994478-55994497 Msa0126880:intron 40.0%
TGCCACATAATCCTTCAATG+AGG - chr1_3:55994521-55994540 None:intergenic 40.0%
ACTTAATCAAAAGGGGGGAT+GGG - chr1_3:55994634-55994653 None:intergenic 40.0%
AGCACACTTAATCAAAAGGG+GGG - chr1_3:55994639-55994658 None:intergenic 40.0%
ACTCGGTAGAACTAGACAAT+GGG - chr1_3:55994688-55994707 None:intergenic 40.0%
AACTCGGTAGAACTAGACAA+TGG - chr1_3:55994689-55994708 None:intergenic 40.0%
AGTTTCCCCCAATCAATATC+AGG - chr1_3:55994808-55994827 None:intergenic 40.0%
! GACGTCTGACCTAACAATTT+TGG - chr1_3:55995040-55995059 None:intergenic 40.0%
! TCACAGAAAAGTGGAGGTAT+CGG - chr1_3:55995081-55995100 None:intergenic 40.0%
GATCATCACACTTTCTCTCT+TGG - chr1_3:55995155-55995174 None:intergenic 40.0%
! TCAATTACCTCTGAGAGAGT+AGG + chr1_3:55995247-55995266 Msa0126880:intron 40.0%
! ATAGCCTTAGTGTGATCAGT+AGG + chr1_3:55995342-55995361 Msa0126880:intron 40.0%
TACACCTACTGATCACACTA+AGG - chr1_3:55995349-55995368 None:intergenic 40.0%
ACATATGGTTGGATTTAGGC+AGG - chr1_3:55995713-55995732 None:intergenic 40.0%
ACAATGGCGCACAAAACATA+TGG - chr1_3:55995728-55995747 None:intergenic 40.0%
! TATGTTTTGTGCGCCATTGT+CGG + chr1_3:55995728-55995747 Msa0126880:intron 40.0%
AACTGATGTTGATGTGGTAG+TGG - chr1_3:55995981-55996000 None:intergenic 40.0%
GTGGTAAACTGATGTTGATG+TGG - chr1_3:55995987-55996006 None:intergenic 40.0%
! CCACATACACGTTTTTGTAG+CGG + chr1_3:55996003-55996022 Msa0126880:intron 40.0%
!!! GTTTTTGTAGCGGATAACGA+CGG + chr1_3:55996013-55996032 Msa0126880:intron 40.0%
TTAATTAGGTCACGGAAGGA+AGG - chr1_3:55996237-55996256 None:intergenic 40.0%
TCGTTTCAGTGGAATGAAAG+GGG - chr1_3:55996277-55996296 None:intergenic 40.0%
! GGTTTACGGAGTCAGAATTT+TGG - chr1_3:55996351-55996370 None:intergenic 40.0%
! AGAGATGGAACAAGCAGTTT+TGG + chr1_3:55996591-55996610 Msa0126880:intron 40.0%
TAGCAGTAGAACATAGCTGA+CGG - chr1_3:55996690-55996709 None:intergenic 40.0%
GAGTGTCTTAGTGAAGTTTG+TGG + chr1_3:55996958-55996977 Msa0126880:intron 40.0%
CAAACCTCTGATGTCAATAG+TGG + chr1_3:55997100-55997119 Msa0126880:intron 40.0%
CAACATGTTTATCCCAGTGA+TGG - chr1_3:55997332-55997351 None:intergenic 40.0%
CATCACTGGGATAAACATGT+TGG + chr1_3:55997330-55997349 Msa0126880:intron 40.0%
GATAAACATGTTGGGTTTCG+TGG + chr1_3:55997339-55997358 Msa0126880:intron 40.0%
! CATGAAAAATCGGTTTAGGC+GGG - chr1_3:55997634-55997653 None:intergenic 40.0%
! CCATGAAAAATCGGTTTAGG+CGG - chr1_3:55997635-55997654 None:intergenic 40.0%
TACTTCCTATGTCAAGTAGG+TGG + chr1_3:55997672-55997691 Msa0126880:intron 40.0%
GCTTCTACAATGAACAAGCT+GGG + chr1_3:55997694-55997713 Msa0126880:intron 40.0%
! GATGTCAGAGTGGATTCATT+CGG - chr1_3:55997725-55997744 None:intergenic 40.0%
!! AAAGGAGGAAGCTCTAAAGA+CGG - chr1_3:55997833-55997852 None:intergenic 40.0%
CTTCCTCCTTTCCAAGAATA+TGG + chr1_3:55997842-55997861 Msa0126880:intron 40.0%
TCTCCATATTCTTGGAAAGG+AGG - chr1_3:55997848-55997867 None:intergenic 40.0%
TATGGAGATGAGAGAAATGG+AGG + chr1_3:55997860-55997879 Msa0126880:intron 40.0%
CACAGGGGAGTTATTCTAAA+CGG - chr1_3:55997920-55997939 None:intergenic 40.0%
GTTAAAATGAGGGAAGGTCA+TGG - chr1_3:55997973-55997992 None:intergenic 40.0%
TAAGACAGCAACACCAACAT+GGG - chr1_3:55998078-55998097 None:intergenic 40.0%
ACTATCAGAGAAAAGGTGAG+AGG - chr1_3:55998138-55998157 None:intergenic 40.0%
GGAGGTTACTATCAGAGAAA+AGG - chr1_3:55998145-55998164 None:intergenic 40.0%
! ATTTGAGGCACAAAGATTGG+AGG - chr1_3:55998163-55998182 None:intergenic 40.0%
CCAATCTTTGTGCCTCAAAT+CGG + chr1_3:55998163-55998182 Msa0126880:intron 40.0%
TTGCTGAGATGGATAAGTAG+AGG - chr1_3:55998248-55998267 None:intergenic 40.0%
GTTCCAGATTTCAAAGGATC+TGG + chr1_3:55998364-55998383 Msa0126880:intron 40.0%
ATAATCCAAACTCAGCCTGA+AGG + chr1_3:55998448-55998467 Msa0126880:intron 40.0%
CTCCCACAAACTCAAGATAA+AGG - chr1_3:55998477-55998496 None:intergenic 40.0%
AGTTAGTTAGAGAAGTGGCT+AGG + chr1_3:55998559-55998578 Msa0126880:intron 40.0%
TTTCACCTTGGGTCATTAGT+TGG - chr1_3:55998859-55998878 None:intergenic 40.0%
! CTGGTCAATTGATTTCACCT+TGG - chr1_3:55998871-55998890 None:intergenic 40.0%
CAATTGACCAGATACTGTTG+TGG + chr1_3:55998880-55998899 Msa0126880:intron 40.0%
AGGAAGGTTTCAGCTTTCAA+TGG - chr1_3:55998926-55998945 None:intergenic 40.0%
CCGAACACATACACAAAACA+TGG - chr1_3:55999052-55999071 None:intergenic 40.0%
! TTTTCAGCTACAGAGGGATA+AGG + chr1_3:55999078-55999097 Msa0126880:intron 40.0%
TTTCAGCTACAGAGGGATAA+GGG + chr1_3:55999079-55999098 Msa0126880:intron 40.0%
GCCCAAATGTGACAGTAAAT+TGG + chr1_3:55999161-55999180 Msa0126880:intron 40.0%
AGAACATCCATGTCCATACA+GGG - chr1_3:55999193-55999212 None:intergenic 40.0%
! AGCGTAGACTGTTTGTTTCT+AGG + chr1_3:55999232-55999251 Msa0126880:intron 40.0%
TAGTAAAATATGTCGGCGGA+TGG - chr1_3:55999899-55999918 None:intergenic 40.0%
TTTCGGTTGCACAACAAAGT+TGG + chr1_3:56000122-56000141 Msa0126880:intron 40.0%
TTCGGTTGCACAACAAAGTT+GGG + chr1_3:56000123-56000142 Msa0126880:intron 40.0%
AACAAAGTTGGGTGATGACT+TGG + chr1_3:56000134-56000153 Msa0126880:intron 40.0%
ACCTGGGTGAACCTATTTAA+AGG + chr1_3:56000512-56000531 Msa0126880:intron 40.0%
CCTGGGTGAACCTATTTAAA+GGG + chr1_3:56000513-56000532 Msa0126880:intron 40.0%
AGAGAGCTGTCCCTTTAAAT+AGG - chr1_3:56000526-56000545 None:intergenic 40.0%
! TGGTCTTGATCATAGTGACA+AGG - chr1_3:56000614-56000633 None:intergenic 40.0%
GTCACTATGATCAAGACCAA+CGG + chr1_3:56000615-56000634 Msa0126880:intron 40.0%
TCACTATGATCAAGACCAAC+GGG + chr1_3:56000616-56000635 Msa0126880:intron 40.0%
!!! GATTTTTCAGGCGACATACA+TGG + chr1_3:56000971-56000990 Msa0126880:intron 40.0%
!!! CTAAGGCTTTTTGAGTATGG+TGG + chr1_3:56001010-56001029 Msa0126880:CDS 40.0%
! AAAAACAAGTAGTTGGCCTG+AGG - chr1_3:56001043-56001062 None:intergenic 40.0%
!! TCAGGCCAACTACTTGTTTT+TGG + chr1_3:56001042-56001061 Msa0126880:CDS 40.0%
!! CAGGCCAACTACTTGTTTTT+GGG + chr1_3:56001043-56001062 Msa0126880:CDS 40.0%
! AAGATTTTGTGCATGCATGG+CGG + chr1_3:56001295-56001314 Msa0126880:CDS 40.0%
CAACCTTGAACTTCTTTGCT+AGG - chr1_3:56001421-56001440 None:intergenic 40.0%
CTAGCAAAGAAGTTCAAGGT+TGG + chr1_3:56001419-56001438 Msa0126880:CDS 40.0%
AGCAAAGAAGTTCAAGGTTG+GGG + chr1_3:56001421-56001440 Msa0126880:CDS 40.0%
!! AGGGGAGTGTCATATACATT+TGG + chr1_3:56001454-56001473 Msa0126880:CDS 40.0%
GCAATCCTAATCTTTCTCTC+AGG + chr1_3:56001637-56001656 Msa0126880:intron 40.0%
ATGACCCTGAGAGAAAGATT+AGG - chr1_3:56001645-56001664 None:intergenic 40.0%
TGACACACATTTATGCACTG+AGG + chr1_3:56001703-56001722 Msa0126880:intron 40.0%
CAATTCTTCGATCGCAATAC+AGG - chr1_3:56001788-56001807 None:intergenic 40.0%
! ATTATCTTTTGACCAGGTGG+TGG + chr1_3:56001848-56001867 Msa0126880:intron 40.0%
TCAAACTCCCCACAGTAATT+AGG - chr1_3:56001927-56001946 None:intergenic 40.0%
AGAGTTTCCTGGTTTAGTAG+TGG - chr1_3:56002051-56002070 None:intergenic 40.0%
! TTTTTCTCTCTGTCTTGGCT+TGG + chr1_3:56002163-56002182 Msa0126880:intron 40.0%
ACAACGCAGAATTTGGAGAT+AGG + chr1_3:56002299-56002318 Msa0126880:intron 40.0%
CAACGCAGAATTTGGAGATA+GGG + chr1_3:56002300-56002319 Msa0126880:intron 40.0%
!! TAGTCGTGCAAGAAAGCATT+TGG + chr1_3:56002465-56002484 Msa0126880:CDS 40.0%
!! AGTCGTGCAAGAAAGCATTT+GGG + chr1_3:56002466-56002485 Msa0126880:CDS 40.0%
!! TGGGGCATTGAATTTAGCAA+TGG + chr1_3:56002485-56002504 Msa0126880:CDS 40.0%
TCATACTTTCGTACCAAGGA+AGG - chr1_3:56002821-56002840 None:intergenic 40.0%
AAAATGGTTGCTGTCACAAC+TGG + chr1_3:56002855-56002874 Msa0126880:CDS 40.0%
TATGTCTACGAATGCTTGAG+AGG - chr1_3:56003067-56003086 None:intergenic 40.0%
TGGGTGGAAGTTGAGAATAA+AGG + chr1_3:56003136-56003155 Msa0126880:three_prime_UTR 40.0%
ATGATTGTCCAACAGAGTGG+TGG + chr1_3:55993719-55993738 Msa0126880:CDS 45.0%
CTCGAATTTCCTCTCCATGT+TGG - chr1_3:55993763-55993782 None:intergenic 45.0%
ACATGGAGAGGAAATTCGAG+AGG + chr1_3:55993763-55993782 Msa0126880:intron 45.0%
TGAGCCTCGATGCACAATAA+CGG + chr1_3:55993800-55993819 Msa0126880:intron 45.0%
AGAACCGTTATTGTGCATCG+AGG - chr1_3:55993807-55993826 None:intergenic 45.0%
!! AGGAAAGTGCCAATAGAACG+AGG + chr1_3:55993996-55994015 Msa0126880:intron 45.0%
AAGTCTGGACCTCGTTCTAT+TGG - chr1_3:55994008-55994027 None:intergenic 45.0%
ACGCTATACCACATGGTGAA+AGG + chr1_3:55994295-55994314 Msa0126880:intron 45.0%
CGCTATACCACATGGTGAAA+GGG + chr1_3:55994296-55994315 Msa0126880:intron 45.0%
GCTATACCACATGGTGAAAG+GGG + chr1_3:55994297-55994316 Msa0126880:intron 45.0%
TGCAAGTTATGGCCCATATG+TGG + chr1_3:55994363-55994382 Msa0126880:intron 45.0%
! GCCTTGCTCGACTTTTTATG+TGG + chr1_3:55994477-55994496 Msa0126880:intron 45.0%
CCCACATAAAAAGTCGAGCA+AGG - chr1_3:55994481-55994500 None:intergenic 45.0%
! TGCTCGACTTTTTATGTGGG+TGG + chr1_3:55994481-55994500 Msa0126880:intron 45.0%
ATAAACACACCTTGCATGGG+AGG - chr1_3:55994610-55994629 None:intergenic 45.0%
GGCATAAACACACCTTGCAT+GGG - chr1_3:55994613-55994632 None:intergenic 45.0%
CACTTAATCAAAAGGGGGGA+TGG - chr1_3:55994635-55994654 None:intergenic 45.0%
! GAGACGGACTTAATCTTCAG+TGG + chr1_3:55994730-55994749 Msa0126880:intron 45.0%
ATTCTACAAGGCGTAGGAAG+TGG - chr1_3:55994975-55994994 None:intergenic 45.0%
!! ACAGAAAAGTGGAGGTATCG+GGG - chr1_3:55995079-55995098 None:intergenic 45.0%
!! CACAGAAAAGTGGAGGTATC+GGG - chr1_3:55995080-55995099 None:intergenic 45.0%
TATACACGCGCTACGGTATA+GGG - chr1_3:55995325-55995344 None:intergenic 45.0%
TGATTGCAGAATGTTAGCGG+CGG - chr1_3:55995505-55995524 None:intergenic 45.0%
CAAAGACTGACGTTCCAACT+AGG - chr1_3:55995641-55995660 None:intergenic 45.0%
AGTTGGAACGTCAGTCTTTG+TGG + chr1_3:55995641-55995660 Msa0126880:intron 45.0%
TGGCGCACAAAACATATGGT+TGG - chr1_3:55995724-55995743 None:intergenic 45.0%
! ATGTTTTGTGCGCCATTGTC+GGG + chr1_3:55995729-55995748 Msa0126880:intron 45.0%
CCGCTACAAAAACGTGTATG+TGG - chr1_3:55996006-55996025 None:intergenic 45.0%
CGTTTCAGTGGAATGAAAGG+GGG - chr1_3:55996276-55996295 None:intergenic 45.0%
GGAAGGGAATTTCGTTTCAG+TGG - chr1_3:55996288-55996307 None:intergenic 45.0%
!! GGGCATTCGTAGTTTGCTTT+GGG - chr1_3:55996330-55996349 None:intergenic 45.0%
!! TGGGCATTCGTAGTTTGCTT+TGG - chr1_3:55996331-55996350 None:intergenic 45.0%
!! CGGTGTCGTTTAGAGGTTTA+CGG - chr1_3:55996365-55996384 None:intergenic 45.0%
!!! AAACACCGTCGTTTTGAGAG+AGG - chr1_3:55996390-55996409 None:intergenic 45.0%
TGATTGTGACGATGAAGACG+AGG - chr1_3:55996420-55996439 None:intergenic 45.0%
CGAAGAAGAGTGGAAGAAGT+GGG - chr1_3:55996474-55996493 None:intergenic 45.0%
TCGAAGAAGAGTGGAAGAAG+TGG - chr1_3:55996475-55996494 None:intergenic 45.0%
ACAGCCACTATTGACATCAG+AGG - chr1_3:55997107-55997126 None:intergenic 45.0%
ATGTCAATAGTGGCTGTGAG+CGG + chr1_3:55997110-55997129 Msa0126880:intron 45.0%
AAACCCAATGCATTTCTCCC+CGG - chr1_3:55997202-55997221 None:intergenic 45.0%
GAGAAATGCATTGGGTTTCG+TGG + chr1_3:55997204-55997223 Msa0126880:intron 45.0%
CATGTTTATCCCAGTGATGG+TGG - chr1_3:55997329-55997348 None:intergenic 45.0%
AAACATGTTGGGTTTCGTGG+TGG + chr1_3:55997342-55997361 Msa0126880:intron 45.0%
ACAAGTGTTTATCGATGGCC+AGG + chr1_3:55997598-55997617 Msa0126880:intron 45.0%
!! CCGCCTAAACCGATTTTTCA+TGG + chr1_3:55997632-55997651 Msa0126880:intron 45.0%
AGAAGCCACCTACTTGACAT+AGG - chr1_3:55997680-55997699 None:intergenic 45.0%
GGCTTCTACAATGAACAAGC+TGG + chr1_3:55997693-55997712 Msa0126880:intron 45.0%
!! TAGTGGTTCTGATGTCAGAG+TGG - chr1_3:55997735-55997754 None:intergenic 45.0%
TGCTGAAGTGAAATAGCCGA+GGG - chr1_3:55997779-55997798 None:intergenic 45.0%
! CTAAAGACGGGGATTAGTGA+GGG - chr1_3:55997820-55997839 None:intergenic 45.0%
! TCTAAAGACGGGGATTAGTG+AGG - chr1_3:55997821-55997840 None:intergenic 45.0%
!! AAGGAGGAAGCTCTAAAGAC+GGG - chr1_3:55997832-55997851 None:intergenic 45.0%
GAGATGAGAGAAATGGAGGA+AGG + chr1_3:55997864-55997883 Msa0126880:intron 45.0%
CTGAGGGGCAGTTAAAATGA+GGG - chr1_3:55997983-55998002 None:intergenic 45.0%
TGCAGTGATTAAGCCCATGT+TGG + chr1_3:55998062-55998081 Msa0126880:intron 45.0%
CTAAGACAGCAACACCAACA+TGG - chr1_3:55998079-55998098 None:intergenic 45.0%
TCAACATGAGCTTGCGGTTT+GGG - chr1_3:55998111-55998130 None:intergenic 45.0%
ATCAACATGAGCTTGCGGTT+TGG - chr1_3:55998112-55998131 None:intergenic 45.0%
GGAACATCAACATGAGCTTG+CGG - chr1_3:55998117-55998136 None:intergenic 45.0%
! CCGATTTGAGGCACAAAGAT+TGG - chr1_3:55998166-55998185 None:intergenic 45.0%
ATCTTTGTGCCTCAAATCGG+TGG + chr1_3:55998166-55998185 Msa0126880:intron 45.0%
!! CTCTCATTACCACCGATTTG+AGG - chr1_3:55998178-55998197 None:intergenic 45.0%
! CTCAAATCGGTGGTAATGAG+AGG + chr1_3:55998176-55998195 Msa0126880:intron 45.0%
GAGAGGCTTCGTTGTCTATT+CGG + chr1_3:55998193-55998212 Msa0126880:intron 45.0%
AGAGGACAGAGAGTAGTCTT+AGG - chr1_3:55998230-55998249 None:intergenic 45.0%
TGTGCTAACACTGTGTTTCG+TGG + chr1_3:55998325-55998344 Msa0126880:intron 45.0%
GTGCTAACACTGTGTTTCGT+GGG + chr1_3:55998326-55998345 Msa0126880:intron 45.0%
TAACACTGTGTTTCGTGGGA+GGG + chr1_3:55998330-55998349 Msa0126880:intron 45.0%
TTGAGTTTGTGGGAGCTGTA+GGG + chr1_3:55998482-55998501 Msa0126880:intron 45.0%
AAAAGGGCAAAAGGCTAGGA+AGG - chr1_3:55998942-55998961 None:intergenic 45.0%
CATGAAAAGGGCAAAAGGCT+AGG - chr1_3:55998946-55998965 None:intergenic 45.0%
! GAAGGCATGAAAAGGGCAAA+AGG - chr1_3:55998951-55998970 None:intergenic 45.0%
AAATTGGTACAGGCCCTGTA+TGG + chr1_3:55999177-55999196 Msa0126880:intron 45.0%
CAGAACATCCATGTCCATAC+AGG - chr1_3:55999194-55999213 None:intergenic 45.0%
ATGCTTTAGCCAGTTAAGCC+AGG + chr1_3:55999655-55999674 Msa0126880:intron 45.0%
TGCTTTAGCCAGTTAAGCCA+GGG + chr1_3:55999656-55999675 Msa0126880:intron 45.0%
! AGGGTTGGCATTGAACAACT+GGG + chr1_3:55999675-55999694 Msa0126880:intron 45.0%
AATGCATCCTTCTGCATCCA+TGG + chr1_3:55999751-55999770 Msa0126880:intron 45.0%
TAGTTGACCATGGATGCAGA+AGG - chr1_3:55999761-55999780 None:intergenic 45.0%
TTCTGCATCCATGGTCAACT+AGG + chr1_3:55999760-55999779 Msa0126880:intron 45.0%
! TAACGAGTGAAGCTCCGTTT+TGG + chr1_3:56000228-56000247 Msa0126880:intron 45.0%
CGACTCTACACTCGGATAAA+AGG - chr1_3:56000492-56000511 None:intergenic 45.0%
CCCTTTAAATAGGTTCACCC+AGG - chr1_3:56000516-56000535 None:intergenic 45.0%
CACTATGATCAAGACCAACG+GGG + chr1_3:56000617-56000636 Msa0126880:intron 45.0%
TTGGGTGATTATGTGGATCG+AGG + chr1_3:56001061-56001080 Msa0126880:CDS 45.0%
TGGGTGATTATGTGGATCGA+GGG + chr1_3:56001062-56001081 Msa0126880:CDS 45.0%
TTGCTTCAATTGCCTACCTG+TGG + chr1_3:56001255-56001274 Msa0126880:CDS 45.0%
TCGCAAAGCAAACCTGTATC+AGG - chr1_3:56001382-56001401 None:intergenic 45.0%
GACCCTAGCAAAGAAGTTCA+AGG + chr1_3:56001415-56001434 Msa0126880:CDS 45.0%
AAGGTTGGGGAATGAATGAC+AGG + chr1_3:56001434-56001453 Msa0126880:CDS 45.0%
AGGTTGGGGAATGAATGACA+GGG + chr1_3:56001435-56001454 Msa0126880:CDS 45.0%
! TCTTATTTGCCGTGCTCATC+AGG + chr1_3:56001519-56001538 Msa0126880:CDS 45.0%
! TTTTCGGCGCCTAATTACTG+TGG + chr1_3:56001915-56001934 Msa0126880:CDS 45.0%
TTTCGGCGCCTAATTACTGT+GGG + chr1_3:56001916-56001935 Msa0126880:CDS 45.0%
AGTACGACCACTACTAAACC+AGG + chr1_3:56002041-56002060 Msa0126880:CDS 45.0%
AAACTCTCCAGCAGGTGTAA+AGG + chr1_3:56002064-56002083 Msa0126880:CDS 45.0%
GCACAAAATCAACCGTGAGT+TGG + chr1_3:56002123-56002142 Msa0126880:intron 45.0%
!! GTCGTGCAAGAAAGCATTTG+GGG + chr1_3:56002467-56002486 Msa0126880:CDS 45.0%
!!! TTTTTTTTTTTTTTTATCTT+CGG - chr1_3:55996192-55996211 None:intergenic 5.0%
GACACTAACCACCACTCTGT+TGG - chr1_3:55993730-55993749 None:intergenic 50.0%
TGTCGCAGACAATCCCAACA+TGG + chr1_3:55993746-55993765 Msa0126880:intron 50.0%
CAGACAATCCCAACATGGAG+AGG + chr1_3:55993751-55993770 Msa0126880:intron 50.0%
TGGACCTAAAATTGGGCGAC+TGG + chr1_3:55994152-55994171 Msa0126880:intron 50.0%
ACCTAAAATTGGGCGACTGG+TGG + chr1_3:55994155-55994174 Msa0126880:intron 50.0%
CCTAAAATTGGGCGACTGGT+GGG + chr1_3:55994156-55994175 Msa0126880:intron 50.0%
AATGGAGTCCCAAAACTGCG+TGG + chr1_3:55994186-55994205 Msa0126880:intron 50.0%
AGTCCCAAAACTGCGTGGTT+TGG + chr1_3:55994191-55994210 Msa0126880:intron 50.0%
! GCTCCAAACCACGCAGTTTT+GGG - chr1_3:55994197-55994216 None:intergenic 50.0%
GAGCACAACGCTATACCACA+TGG + chr1_3:55994288-55994307 Msa0126880:intron 50.0%
ATACCACATGGTGAAAGGGG+TGG + chr1_3:55994300-55994319 Msa0126880:intron 50.0%
ATTATGTGGCATCCCACGCT+CGG + chr1_3:55994530-55994549 Msa0126880:intron 50.0%
GAAAGCTATCAACCGAGCGT+GGG - chr1_3:55994545-55994564 None:intergenic 50.0%
GGGCATAAACACACCTTGCA+TGG - chr1_3:55994614-55994633 None:intergenic 50.0%
TCCACAAGTCCTAGCTCAAC+TGG + chr1_3:55995007-55995026 Msa0126880:intron 50.0%
! GGCATTTTGCCAGTTGAGCT+AGG - chr1_3:55995019-55995038 None:intergenic 50.0%
GTTAGGTCAGACGTCATGAC+CGG + chr1_3:55995045-55995064 Msa0126880:intron 50.0%
TTAGGTCAGACGTCATGACC+GGG + chr1_3:55995046-55995065 Msa0126880:intron 50.0%
AGGGCACGTACACCTTTGTA+AGG - chr1_3:55995289-55995308 None:intergenic 50.0%
! CAAAGGTGTACGTGCCCTAT+AGG + chr1_3:55995291-55995310 Msa0126880:intron 50.0%
CTATACACGCGCTACGGTAT+AGG - chr1_3:55995326-55995345 None:intergenic 50.0%
CTAAGGCTATACACGCGCTA+CGG - chr1_3:55995332-55995351 None:intergenic 50.0%
! TGTTTTGTGCGCCATTGTCG+GGG + chr1_3:55995730-55995749 Msa0126880:intron 50.0%
!! TGATGTGGTAGTGGATGACG+TGG - chr1_3:55995972-55995991 None:intergenic 50.0%
!! AGAGGAACGGTGTCGTTTAG+AGG - chr1_3:55996372-55996391 None:intergenic 50.0%
!!! CCGTCGTTTTGAGAGAGGAA+CGG - chr1_3:55996385-55996404 None:intergenic 50.0%
CCGTTCCTCTCTCAAAACGA+CGG + chr1_3:55996382-55996401 Msa0126880:intron 50.0%
TTGTGACGATGAAGACGAGG+AGG - chr1_3:55996417-55996436 None:intergenic 50.0%
TTGAAGTTCGTAGCCGTCCA+GGG + chr1_3:55996635-55996654 Msa0126880:CDS 50.0%
ATCCCGGGGAGAAATGCATT+GGG + chr1_3:55997196-55997215 Msa0126880:intron 50.0%
AACCCAATGCATTTCTCCCC+GGG - chr1_3:55997201-55997220 None:intergenic 50.0%
ACAGCCGCTATTGACAACTG+AGG - chr1_3:55997242-55997261 None:intergenic 50.0%
TTGTCAATAGCGGCTGTGAG+CGG + chr1_3:55997245-55997264 Msa0126880:intron 50.0%
CGTGTATCAGCCCTGCTTTA+GGG - chr1_3:55997391-55997410 None:intergenic 50.0%
TCGTGTATCAGCCCTGCTTT+AGG - chr1_3:55997392-55997411 None:intergenic 50.0%
TAGGCGGGAAGATATTGTCC+TGG - chr1_3:55997619-55997638 None:intergenic 50.0%
TGAAGTGAAATAGCCGAGGG+AGG - chr1_3:55997776-55997795 None:intergenic 50.0%
CTGCTGAAGTGAAATAGCCG+AGG - chr1_3:55997780-55997799 None:intergenic 50.0%
!! AGGAGGAAGCTCTAAAGACG+GGG - chr1_3:55997831-55997850 None:intergenic 50.0%
ATGAGGGAAGGTCATGGAAG+AGG - chr1_3:55997967-55997986 None:intergenic 50.0%
GGGGCAGTTAAAATGAGGGA+AGG - chr1_3:55997979-55997998 None:intergenic 50.0%
GCTGAGGGGCAGTTAAAATG+AGG - chr1_3:55997984-55998003 None:intergenic 50.0%
!! TCTGCAGTCTTGAGTGCTGA+GGG - chr1_3:55997999-55998018 None:intergenic 50.0%
ATAATGCACAGCCCCCAATC+GGG - chr1_3:55998289-55998308 None:intergenic 50.0%
GATAATGCACAGCCCCCAAT+CGG - chr1_3:55998290-55998309 None:intergenic 50.0%
CTAACACTGTGTTTCGTGGG+AGG + chr1_3:55998329-55998348 Msa0126880:intron 50.0%
GGAATCCTTCAGGCTGAGTT+TGG - chr1_3:55998456-55998475 None:intergenic 50.0%
CTTGAGTTTGTGGGAGCTGT+AGG + chr1_3:55998481-55998500 Msa0126880:intron 50.0%
TTTGTGGGAGCTGTAGGGTT+GGG + chr1_3:55998487-55998506 Msa0126880:intron 50.0%
GACCAGATACTGTTGTGGCA+TGG + chr1_3:55998885-55998904 Msa0126880:intron 50.0%
TGCCATGCCACAACAGTATC+TGG - chr1_3:55998890-55998909 None:intergenic 50.0%
! GTTCCGGTTTTCTACCTCAC+AGG + chr1_3:55999139-55999158 Msa0126880:intron 50.0%
TTAGCCAGTTAAGCCAGGGT+TGG + chr1_3:55999660-55999679 Msa0126880:intron 50.0%
AATGCCAACCCTGGCTTAAC+TGG - chr1_3:55999667-55999686 None:intergenic 50.0%
CAGTTGTTCAATGCCAACCC+TGG - chr1_3:55999676-55999695 None:intergenic 50.0%
! CAGGGTTGGCATTGAACAAC+TGG + chr1_3:55999674-55999693 Msa0126880:intron 50.0%
!! GGGTGATGACTTGGTGATTG+AGG + chr1_3:56000143-56000162 Msa0126880:intron 50.0%
TGATCAAGACCAACGGGGTT+TGG + chr1_3:56000622-56000641 Msa0126880:intron 50.0%
TACTCTTCACCAAACCCCGT+TGG - chr1_3:56000634-56000653 None:intergenic 50.0%
CCAAAACAATGCCGTGCACA+AGG - chr1_3:56000802-56000821 None:intergenic 50.0%
! CCTTGTGCACGGCATTGTTT+TGG + chr1_3:56000799-56000818 Msa0126880:intron 50.0%
!! GTATGGTGGATTACCTCCTC+AGG + chr1_3:56001024-56001043 Msa0126880:CDS 50.0%
! AACAAGTAGTTGGCCTGAGG+AGG - chr1_3:56001040-56001059 None:intergenic 50.0%
CCTGTATCAGGCACATCAGT+CGG - chr1_3:56001370-56001389 None:intergenic 50.0%
GTTTGCTTTGCGATCTCCTC+TGG + chr1_3:56001389-56001408 Msa0126880:CDS 50.0%
GGTTGGGGAATGAATGACAG+GGG + chr1_3:56001436-56001455 Msa0126880:CDS 50.0%
!! ATCTTTTGACCAGGTGGTGG+AGG + chr1_3:56001851-56001870 Msa0126880:intron 50.0%
TTCGGCGCCTAATTACTGTG+GGG + chr1_3:56001917-56001936 Msa0126880:CDS 50.0%
AAACCAGGAAACTCTCCAGC+AGG + chr1_3:56002056-56002075 Msa0126880:CDS 50.0%
TCTCCAGCAGGTGTAAAGGT+AGG + chr1_3:56002068-56002087 Msa0126880:intron 50.0%
CTTCCTACCTTTACACCTGC+TGG - chr1_3:56002074-56002093 None:intergenic 50.0%
AAGACGGCATTGCCAACTCA+CGG - chr1_3:56002138-56002157 None:intergenic 50.0%
! TCTGAAGCAGCCAAAGCCAT+TGG + chr1_3:56002544-56002563 Msa0126880:CDS 50.0%
GGACTGCAAGGAAGCAGAAA+GGG - chr1_3:56002800-56002819 None:intergenic 50.0%
AGGACTGCAAGGAAGCAGAA+AGG - chr1_3:56002801-56002820 None:intergenic 50.0%
! CCCACCAGTCGCCCAATTTT+AGG - chr1_3:55994159-55994178 None:intergenic 55.0%
! GGCTCCAAACCACGCAGTTT+TGG - chr1_3:55994198-55994217 None:intergenic 55.0%
CACATGGTGAAAGGGGTGGA+GGG + chr1_3:55994304-55994323 Msa0126880:intron 55.0%
TGGCCCATATGTGGTTGCGA+CGG + chr1_3:55994372-55994391 Msa0126880:intron 55.0%
CCTCCGTCGCAACCACATAT+GGG - chr1_3:55994378-55994397 None:intergenic 55.0%
ACCTCCGTCGCAACCACATA+TGG - chr1_3:55994379-55994398 None:intergenic 55.0%
GGAAAGCTATCAACCGAGCG+TGG - chr1_3:55994546-55994565 None:intergenic 55.0%
TGTGTGCAACCTCCCATGCA+AGG + chr1_3:55994598-55994617 Msa0126880:intron 55.0%
GCCAGTTGAGCTAGGACTTG+TGG - chr1_3:55995011-55995030 None:intergenic 55.0%
TAGGTCAGACGTCATGACCG+GGG + chr1_3:55995047-55995066 Msa0126880:intron 55.0%
TGACGATGAAGACGAGGAGG+AGG - chr1_3:55996414-55996433 None:intergenic 55.0%
CTGGACGGCTACGAACTTCA+AGG - chr1_3:55996636-55996655 None:intergenic 55.0%
CTTGAAGTTCGTAGCCGTCC+AGG + chr1_3:55996634-55996653 Msa0126880:CDS 55.0%
AGGGAAGCAGGTTCAGCTGT+CGG + chr1_3:55996654-55996673 Msa0126880:CDS 55.0%
GTACACTCCAATGCGTCTGG+GGG - chr1_3:55997146-55997165 None:intergenic 55.0%
GGTACACTCCAATGCGTCTG+GGG - chr1_3:55997147-55997166 None:intergenic 55.0%
CGGTACACTCCAATGCGTCT+GGG - chr1_3:55997148-55997167 None:intergenic 55.0%
CCAGACGCATTGGAGTGTAC+CGG + chr1_3:55997146-55997165 Msa0126880:intron 55.0%
ACGCATTGGAGTGTACCGGA+CGG + chr1_3:55997150-55997169 Msa0126880:intron 55.0%
CTACAGACGCTATACCCGTC+CGG - chr1_3:55997168-55997187 None:intergenic 55.0%
GACGGGTATAGCGTCTGTAG+CGG + chr1_3:55997168-55997187 Msa0126880:intron 55.0%
CAATGCATTTCTCCCCGGGA+TGG - chr1_3:55997197-55997216 None:intergenic 55.0%
CATCCCGGGGAGAAATGCAT+TGG + chr1_3:55997195-55997214 Msa0126880:intron 55.0%
CTACGGACGCTATACCCATC+CGG - chr1_3:55997303-55997322 None:intergenic 55.0%
GATGGGTATAGCGTCCGTAG+CGG + chr1_3:55997303-55997322 Msa0126880:intron 55.0%
CATGTTGGGTTTCGTGGTGG+AGG + chr1_3:55997345-55997364 Msa0126880:intron 55.0%
!! CAGCCCTGCTTTAGGGTTTG+CGG - chr1_3:55997384-55997403 None:intergenic 55.0%
GTGAAATAGCCGAGGGAGGA+GGG - chr1_3:55997772-55997791 None:intergenic 55.0%
AGTGAAATAGCCGAGGGAGG+AGG - chr1_3:55997773-55997792 None:intergenic 55.0%
! ACGGGGATTAGTGAGGGAGA+CGG - chr1_3:55997814-55997833 None:intergenic 55.0%
!! CTGCAGTCTTGAGTGCTGAG+GGG - chr1_3:55997998-55998017 None:intergenic 55.0%
! CTCTGCAGTCTTGAGTGCTG+AGG - chr1_3:55998000-55998019 None:intergenic 55.0%
AAGACTGCAGAGCCAAGCCA+TGG + chr1_3:55998008-55998027 Msa0126880:intron 55.0%
CGTTGACAACCTCCATGGCT+TGG - chr1_3:55998023-55998042 None:intergenic 55.0%
!! GTTGGCGTTGACAACCTCCA+TGG - chr1_3:55998028-55998047 None:intergenic 55.0%
ACGCCGTTTCTGTCCCGATT+GGG + chr1_3:55998273-55998292 Msa0126880:intron 55.0%
GTTTGTGGGAGCTGTAGGGT+TGG + chr1_3:55998486-55998505 Msa0126880:intron 55.0%
TTGTGGGAGCTGTAGGGTTG+GGG + chr1_3:55998488-55998507 Msa0126880:intron 55.0%
GGGCCTGTGAGGTAGAAAAC+CGG - chr1_3:55999145-55999164 None:intergenic 55.0%
CTGTCACATTTGGGCCTGTG+AGG - chr1_3:55999156-55999175 None:intergenic 55.0%
GTACAGGCCCTGTATGGACA+TGG + chr1_3:55999183-55999202 Msa0126880:intron 55.0%
! ATGTCGGCGGATGGCATTGA+AGG - chr1_3:55999890-55999909 None:intergenic 55.0%
ATCCGAGTGTAGAGTCGACC+TGG + chr1_3:56000495-56000514 Msa0126880:intron 55.0%
TCCGAGTGTAGAGTCGACCT+GGG + chr1_3:56000496-56000515 Msa0126880:intron 55.0%
! ACCCAGGTCGACTCTACACT+CGG - chr1_3:56000500-56000519 None:intergenic 55.0%
TCATCAATGAGGGCTGCCAC+AGG - chr1_3:56001274-56001293 None:intergenic 55.0%
CCGACTGATGTGCCTGATAC+AGG + chr1_3:56001367-56001386 Msa0126880:CDS 55.0%
CTTTGCTAGGGTCTGACCAG+AGG - chr1_3:56001408-56001427 None:intergenic 55.0%
!! TTTGACCAGGTGGTGGAGGA+TGG + chr1_3:56001855-56001874 Msa0126880:intron 55.0%
CATATCCATCCTCCACCACC+TGG - chr1_3:56001863-56001882 None:intergenic 55.0%
TGTGGGGAGTTTGACAACGC+TGG + chr1_3:56001933-56001952 Msa0126880:CDS 55.0%
ACACCTGCTGGAGAGTTTCC+TGG - chr1_3:56002062-56002081 None:intergenic 55.0%
CTGCAAGGAAGCAGAAAGGG+CGG - chr1_3:56002797-56002816 None:intergenic 55.0%
GCTTCCTTGCAGTCCTTCCT+TGG + chr1_3:56002805-56002824 Msa0126880:intron 55.0%
CGTACCAAGGAAGGACTGCA+AGG - chr1_3:56002812-56002831 None:intergenic 55.0%
CTGTCACAACTGGTCAGCGA+AGG + chr1_3:56002865-56002884 Msa0126880:CDS 55.0%
CCTCCACCCCTTTCACCATG+TGG - chr1_3:55994306-55994325 None:intergenic 60.0%
CCACATGGTGAAAGGGGTGG+AGG + chr1_3:55994303-55994322 Msa0126880:intron 60.0%
CCCATATGTGGTTGCGACGG+AGG + chr1_3:55994375-55994394 Msa0126880:intron 60.0%
!! AGGTATCGGGGTTCGAACCC+CGG - chr1_3:55995067-55995086 None:intergenic 60.0%
GTGGGGTCCTACTCTCTCAG+AGG - chr1_3:55995257-55995276 None:intergenic 60.0%
GCTGAACCTGCTTCCCTGGA+CGG - chr1_3:55996651-55996670 None:intergenic 60.0%
GACAGCTGAACCTGCTTCCC+TGG - chr1_3:55996655-55996674 None:intergenic 60.0%
GCAGGTTCAGCTGTCGGAGA+CGG + chr1_3:55996660-55996679 Msa0126880:CDS 60.0%
CCGGTACACTCCAATGCGTC+TGG - chr1_3:55997149-55997168 None:intergenic 60.0%
CGCATTGGAGTGTACCGGAC+GGG + chr1_3:55997151-55997170 Msa0126880:intron 60.0%
TGCATTTCTCCCCGGGATGG+TGG - chr1_3:55997194-55997213 None:intergenic 60.0%
TCAATAGCGGCTGTGAGCGG+TGG + chr1_3:55997248-55997267 Msa0126880:intron 60.0%
GTACACTCCAACGCGTCTGG+GGG - chr1_3:55997281-55997300 None:intergenic 60.0%
GGTACACTCCAACGCGTCTG+GGG - chr1_3:55997282-55997301 None:intergenic 60.0%
CGGTACACTCCAACGCGTCT+GGG - chr1_3:55997283-55997302 None:intergenic 60.0%
CCAGACGCGTTGGAGTGTAC+CGG + chr1_3:55997281-55997300 Msa0126880:intron 60.0%
ACGCGTTGGAGTGTACCGGA+TGG + chr1_3:55997285-55997304 Msa0126880:intron 60.0%
CGCGTTGGAGTGTACCGGAT+GGG + chr1_3:55997286-55997305 Msa0126880:intron 60.0%
! GTTGGGTTTCGTGGTGGAGG+CGG + chr1_3:55997348-55997367 Msa0126880:intron 60.0%
CGGCCGCAAACCCTAAAGCA+GGG + chr1_3:55997378-55997397 Msa0126880:intron 60.0%
! GGGTGTCACAGCAGCAGTAG+TGG - chr1_3:55997752-55997771 None:intergenic 60.0%
AGTGAGGGAGACGGAGGTGA+AGG - chr1_3:55997805-55997824 None:intergenic 60.0%
! GGGATTAGTGAGGGAGACGG+AGG - chr1_3:55997811-55997830 None:intergenic 60.0%
ACTGCAGAGCCAAGCCATGG+AGG + chr1_3:55998011-55998030 Msa0126880:intron 60.0%
GACGCCGTTTCTGTCCCGAT+TGG + chr1_3:55998272-55998291 Msa0126880:intron 60.0%
CGCCGTTTCTGTCCCGATTG+GGG + chr1_3:55998274-55998293 Msa0126880:intron 60.0%
GCCGTTTCTGTCCCGATTGG+GGG + chr1_3:55998275-55998294 Msa0126880:intron 60.0%
GCCCCCAATCGGGACAGAAA+CGG - chr1_3:55998279-55998298 None:intergenic 60.0%
TGTGGGAGCTGTAGGGTTGG+GGG + chr1_3:55998489-55998508 Msa0126880:intron 60.0%
CAATGAGGGCTGCCACAGGT+AGG - chr1_3:56001270-56001289 None:intergenic 60.0%
GCACATCAGTCGGCCTCTGT+AGG - chr1_3:56001360-56001379 None:intergenic 60.0%
TCGTAGCCGTCCAGGGAAGC+AGG + chr1_3:55996642-55996661 Msa0126880:CDS 65.0%
TAGTCCGCCCCCAGACGCAT+TGG + chr1_3:55997136-55997155 Msa0126880:intron 65.0%
CACTCCAATGCGTCTGGGGG+CGG - chr1_3:55997143-55997162 None:intergenic 65.0%
GTCTGTAGCGGCCACCATCC+CGG + chr1_3:55997180-55997199 Msa0126880:intron 65.0%
TCTGTAGCGGCCACCATCCC+GGG + chr1_3:55997181-55997200 Msa0126880:intron 65.0%
TAGTCCACCCCCAGACGCGT+TGG + chr1_3:55997271-55997290 Msa0126880:intron 65.0%
CCGGTACACTCCAACGCGTC+TGG - chr1_3:55997284-55997303 None:intergenic 65.0%
TCCGTAGCGGCCACCATCAC+TGG + chr1_3:55997316-55997335 Msa0126880:intron 65.0%
!! CCCAGTGATGGTGGCCGCTA+CGG - chr1_3:55997320-55997339 None:intergenic 65.0%
CCGTAGCGGCCACCATCACT+GGG + chr1_3:55997317-55997336 Msa0126880:intron 65.0%
! TTCGTGGTGGAGGCGGAGCA+AGG + chr1_3:55997355-55997374 Msa0126880:intron 65.0%
GCGGCCGCAAACCCTAAAGC+AGG + chr1_3:55997377-55997396 Msa0126880:intron 65.0%
GCTGTGACACCCTCCTCCCT+CGG + chr1_3:55997760-55997779 Msa0126880:intron 65.0%
CGGCGTCGCAGTTGCTGAGA+TGG - chr1_3:55998259-55998278 None:intergenic 65.0%
CTGTAGCGGCCACCATCCCG+GGG + chr1_3:55997182-55997201 Msa0126880:intron 70.0%
CACTCCAACGCGTCTGGGGG+TGG - chr1_3:55997278-55997297 None:intergenic 70.0%
! GTGGTGGAGGCGGAGCAAGG+CGG + chr1_3:55997358-55997377 Msa0126880:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 55993656 56003232 55993656 ID=Msa0126880;Name=Msa0126880
chr1_3 mRNA 55993656 56003232 55993656 ID=Msa0126880-mRNA-1;Parent=Msa0126880;Name=Msa0126880-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|0.4|0.66|1|0.4|0.66|6|177|507
chr1_3 exon 55993656 55993740 55993656 ID=Msa0126880-mRNA-1:exon:17536;Parent=Msa0126880-mRNA-1
chr1_3 exon 55996593 55996769 55996593 ID=Msa0126880-mRNA-1:exon:17537;Parent=Msa0126880-mRNA-1
chr1_3 exon 56000981 56001540 56000981 ID=Msa0126880-mRNA-1:exon:17538;Parent=Msa0126880-mRNA-1
chr1_3 exon 56001864 56002085 56001864 ID=Msa0126880-mRNA-1:exon:17539;Parent=Msa0126880-mRNA-1
chr1_3 exon 56002392 56002632 56002392 ID=Msa0126880-mRNA-1:exon:17540;Parent=Msa0126880-mRNA-1
chr1_3 exon 56002817 56003232 56002817 ID=Msa0126880-mRNA-1:exon:17541;Parent=Msa0126880-mRNA-1
chr1_3 CDS 55993656 55993740 55993656 ID=Msa0126880-mRNA-1:cds;Parent=Msa0126880-mRNA-1
chr1_3 CDS 55996593 55996769 55996593 ID=Msa0126880-mRNA-1:cds;Parent=Msa0126880-mRNA-1
chr1_3 CDS 56000981 56001540 56000981 ID=Msa0126880-mRNA-1:cds;Parent=Msa0126880-mRNA-1
chr1_3 CDS 56001864 56002085 56001864 ID=Msa0126880-mRNA-1:cds;Parent=Msa0126880-mRNA-1
chr1_3 CDS 56002392 56002632 56002392 ID=Msa0126880-mRNA-1:cds;Parent=Msa0126880-mRNA-1
chr1_3 CDS 56002817 56003055 56002817 ID=Msa0126880-mRNA-1:cds;Parent=Msa0126880-mRNA-1
chr1_3 three_prime_UTR 56003056 56003232 56003056 ID=Msa0126880-mRNA-1:three_prime_utr;Parent=Msa0126880-mRNA-1
Gene Sequence

>Msa0126880

ATGAAGCACCTAGTGCAAAAGGAATATACATCACGAAAAGAAAATGAAGCTTTTTGGCCCTTAATGATTGTCCAACAGAGTGGTGAGATGGAACAAGCAGTTTTGGATGACATAATCAATCGACTCCTTGAAGTTCGTAGCCGTCCAGGGAAGCAGGTTCAGCTGTCGGAGACGGAGATCCGTCAGCTATGTTCTACTGCTAGAGAGATTTTCTTGCAGCAACCTAATTTATTGGAGCTTGAAGCACCTATTAAGATTTGTGGCGACATACATGGTCAATATTCTGATCTTCTAAGGCTTTTTGAGTATGGTGGATTACCTCCTCAGGCCAACTACTTGTTTTTGGGTGATTATGTGGATCGAGGGAAGCAAAGTTTAGAAACAATATGCCTTCTCTTAGCATATAAAATAAAGTATCCTGAGAATTTTTTTCTTTTGCGGGGAAACCATGAATGTGCTTCTATTAACCGTATATATGGATTTTATGATGAGTGTAAAAGAAGGTTCAATGTAAGGATATGGAAGGTGTTTACTGATTGCTTCAATTGCCTACCTGTGGCAGCCCTCATTGATGAAAAGATTTTGTGCATGCATGGCGGACTTTCTCCTGACTTACATAATTTGGATCAGATTAGAAACCTACAGAGGCCGACTGATGTGCCTGATACAGGTTTGCTTTGCGATCTCCTCTGGTCAGACCCTAGCAAAGAAGTTCAAGGTTGGGGAATGAATGACAGGGGAGTGTCATATACATTTGGTGCTGATAAGGTCTCAGAGTTTCTTCAGAAGCATGATTTGGATCTTATTTGCCGTGCTCATCAGGTGGTGGAGGATGGATATGAGTTCTTTGCTAACCGGCAGCTTGTAACAATATTTTCGGCGCCTAATTACTGTGGGGAGTTTGACAACGCTGGTGCTATGATGAGTGTTGATGAGACACTAATGTGCTCTTTCCAAATATTAAAGCCAGCTGATAAAAAAACAAAGCTCAATTTTGGAAGTACGACCACTACTAAACCAGGAAACTCTCCAGCAGGTGTAAAGTTTTGTGTGATTTCCATATTAACCATTTCTCACATAACTTCGGATTATTGGAATGATCTGAGATTTTATGTGTTAGTCGTGCAAGAAAGCATTTGGGGCATTGAATTTAGCAATGGAACAAGCTACATACATGGAGATTTTCTACTGAGAACTCTGAAGCAGCCAAAGCCATTGGATGAATCAATTGTTTCAAATGCTCACAACATATATACAGATACTGTTGCATTCATTTTTTCTTTCATCCTTCCTTGGTACGAAAGTATGAAGTTGATTTTGGCGAAAATGGTTGCTGTCACAACTGGTCAGCGAAGGAAAGTCGAGTTCCATATGTTATTTTGGAATTGTAAAAACAAAGGGAAACACCATCATGAACTATGTAGACCATTGTTTTTCACTGTTACAAATTTGTATTTTGAGATCAGACATCCCATAATCTCTTCCTTGCTTTCTTTGTACACTAATACCTGGTATATGTTCTGA
Protein sequence

>Msa0126880

MKHLVQKEYTSRKENEAFWPLMIVQQSGEMEQAVLDDIINRLLEVRSRPGKQVQLSETEIRQLCSTAREIFLQQPNLLELEAPIKICGDIHGQYSDLLRLFEYGGLPPQANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVRIWKVFTDCFNCLPVAALIDEKILCMHGGLSPDLHNLDQIRNLQRPTDVPDTGLLCDLLWSDPSKEVQGWGMNDRGVSYTFGADKVSEFLQKHDLDLICRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPADKKTKLNFGSTTTTKPGNSPAGVKFCVISILTISHITSDYWNDLRFYVLVVQESIWGIEFSNGTSYIHGDFLLRTLKQPKPLDESIVSNAHNIYTDTVAFIFSFILPWYESMKLILAKMVAVTTGQRRKVEFHMLFWNCKNKGKHHHELCRPLFFTVTNLYFEIRHPIISSLLSLYTNTWYMF*