AlfalfaGEDB | Msa1350880

M. sativa cultivar zhongmu-4 / Msa1350880

KEGG: K21594
GO: -
PFAM: PF00679.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1350880	XP_003621144.1	99.578	237	1	0	1	237	436	672	4.81e-167	486

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1350880	sp\|B9RUN8\|GUF1_RICCO	86.920	237	31	0	1	237	437	673	7.29e-151	438

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1350880	G7KZV0	99.578	237	1	0	1	237	436	672	2.30e-167	486

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0054480	Msa1350880	0.815478	9.057103e-52	-8.615850e-47
Msa0063530	Msa1350880	0.808219	3.448503e-50	-8.615850e-47
Msa0529890	Msa1350880	0.807081	6.016170e-50	-8.615850e-47
Msa0610430	Msa1350880	0.800914	1.152587e-48	-8.615850e-47
Msa0625720	Msa1350880	0.808004	3.832637e-50	-8.615850e-47
Msa0715470	Msa1350880	0.802791	4.744335e-49	-8.615850e-47
Msa0715700	Msa1350880	0.803487	3.405084e-49	-8.615850e-47
Msa0731940	Msa1350880	0.815607	8.476809e-52	-8.615850e-47
Msa0938220	Msa1350880	0.807001	6.256022e-50	-8.615850e-47
Msa1276890	Msa1350880	0.803906	2.786809e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1350880	MtrunA17_Chr7g0216911	99.578	237	1	0	1	237	436	672	4.43e-171	486
Msa1350880	MtrunA17_Chr3g0130991	52.340	235	110	1	2	236	441	673	9.02e-78	247

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1350880	AT5G39900.1	82.278	237	42	0	1	237	427	663	5.16e-136	397
Msa1350880	AT5G08650.1	51.695	236	112	2	1	236	443	676	2.06e-69	225
Msa1350880	AT5G08650.2	44.444	171	93	2	1	171	443	611	4.59e-39	142

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Find 63 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTGATATTCTCTTGAA+TGG	0.433950	tig0011947:-40746	Msa1350880:CDS
AACTATAGTAGCTATTACTG+TGG	0.603566	tig0011947:+43778	None:intergenic
AACTCGAAATCATATCGTGT+TGG	0.515260	tig0011947:-40689	Msa1350880:CDS
AATATCACCACCATAACACT+TGG	0.596925	tig0011947:+40049	None:intergenic
AATGTTCTTGCCAAGTGTTA+TGG	0.470456	tig0011947:-40059	Msa1350880:CDS
AATTGAAGAAAGTCATTGAC+AGG	0.511476	tig0011947:-40649	Msa1350880:intron
AATTTACTTTGCTGCTTTCA+TGG	0.275772	tig0011947:-39646	Msa1350880:three_prime_UTR
ACAGGCTACCACTCGTTGCT+TGG	0.433082	tig0011947:+43808	None:intergenic
ACCCCTACGCTCAGAGAGAA+GGG	0.575490	tig0011947:+43634	None:intergenic
ACCCTTCTCTCTGAGCGTAG+GGG	0.674829	tig0011947:-43635	Msa1350880:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATACTCATAGATATAAGGCA+CGG	+	tig0011947:39432-39451	None:intergenic	30.0%
TCGGAATACTCATAGATATA+AGG	+	tig0011947:39437-39456	None:intergenic	30.0%
TATATCTATGAGTATTCCGA+TGG	-	tig0011947:39437-39456	Msa1350880:three_prime_UTR	30.0%
TTTGTTAATCTACCTTCCAT+CGG	+	tig0011947:39456-39475	None:intergenic	30.0%
TGTGCGTTTACTAATATTCT+AGG	-	tig0011947:39500-39519	Msa1350880:three_prime_UTR	30.0%
ACTATAGTAGCTATTACTGT+GGG	+	tig0011947:39608-39627	None:intergenic	30.0%
AACTATAGTAGCTATTACTG+TGG	+	tig0011947:39609-39628	None:intergenic	30.0%
TGTATTATGTTCCTTATGCA+AGG	-	tig0011947:39893-39912	Msa1350880:intron	30.0%
AATCTAAACCCAAAAGTCTA+CGG	-	tig0011947:40168-40187	Msa1350880:intron	30.0%
TTTGAATTTAGATGCGTCTA+TGG	+	tig0011947:40910-40929	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0011947	gene	39407	43999	39407	ID=Msa1350880;Name=Msa1350880
tig0011947	mRNA	39407	43999	39407	ID=Msa1350880-mRNA-1;Parent=Msa1350880;Name=Msa1350880-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0\|0.85\|0.62\|1\|0.71\|0.75\|8\|386\|237
tig0011947	exon	39407	39758	39407	ID=Msa1350880-mRNA-1:exon:7580;Parent=Msa1350880-mRNA-1
tig0011947	exon	39901	40100	39901	ID=Msa1350880-mRNA-1:exon:7579;Parent=Msa1350880-mRNA-1
tig0011947	exon	40495	40554	40495	ID=Msa1350880-mRNA-1:exon:7578;Parent=Msa1350880-mRNA-1
tig0011947	exon	40650	40790	40650	ID=Msa1350880-mRNA-1:exon:7577;Parent=Msa1350880-mRNA-1
tig0011947	exon	41506	41619	41506	ID=Msa1350880-mRNA-1:exon:7576;Parent=Msa1350880-mRNA-1
tig0011947	exon	43605	43676	43605	ID=Msa1350880-mRNA-1:exon:7575;Parent=Msa1350880-mRNA-1
tig0011947	exon	43767	43871	43767	ID=Msa1350880-mRNA-1:exon:7574;Parent=Msa1350880-mRNA-1
tig0011947	exon	43944	43999	43944	ID=Msa1350880-mRNA-1:exon:7573;Parent=Msa1350880-mRNA-1
tig0011947	CDS	43944	43999	43944	ID=Msa1350880-mRNA-1:cds;Parent=Msa1350880-mRNA-1
tig0011947	CDS	43767	43871	43767	ID=Msa1350880-mRNA-1:cds;Parent=Msa1350880-mRNA-1
tig0011947	CDS	43605	43676	43605	ID=Msa1350880-mRNA-1:cds;Parent=Msa1350880-mRNA-1
tig0011947	CDS	41506	41619	41506	ID=Msa1350880-mRNA-1:cds;Parent=Msa1350880-mRNA-1
tig0011947	CDS	40650	40790	40650	ID=Msa1350880-mRNA-1:cds;Parent=Msa1350880-mRNA-1
tig0011947	CDS	40495	40554	40495	ID=Msa1350880-mRNA-1:cds;Parent=Msa1350880-mRNA-1
tig0011947	CDS	39935	40100	39935	ID=Msa1350880-mRNA-1:cds;Parent=Msa1350880-mRNA-1
tig0011947	three_prime_UTR	39901	39934	39901	ID=Msa1350880-mRNA-1:three_prime_utr;Parent=Msa1350880-mRNA-1
tig0011947	three_prime_UTR	39407	39758	39407	ID=Msa1350880-mRNA-1:three_prime_utr;Parent=Msa1350880-mRNA-1

Gene Sequence

>Msa1350880

CATATTATCTCAACCGTTCCTACCGTGCCTTATATCTATGAGTATTCCGATGGAAGCAAATTAGAAGTTCAGAATCCTGCTGCATTACCGTCTAATCCCAAGCAACGAGTGGTAGCCTGTTGGGAACCCACAGTAATAGCTACTATAGTTATGCCTAGTGAGTATGTTGGACCTGTTATCACCCTTCTCTCTGAGCGTAGGGGTGAACAGTTGGAGTACTCGTTCATTGACAGTCAACGGGTTTTCATGAAGTATCGTCTTCCTTTGAGGGAAATTGTTATTGACTTTTATAATGAATTGAAGAGTATAACATCAGGCTATGCATCATTTGATTATGAGGATTCAGATTATCAACCATCTGATCTGGTGAAACTTGATATTCTCTTGAATGGTCAAGCAGTGGATGCAATGGCAACCATTGTTCATAACTCGAAATCATATCGTGTTGGGCGTGAATTGGTGGAGAAATTGAAGAAAGTCATTGACAGGCAAATGTTCGAGATAATCATACAAGCCGCCATTGGGTCAAAAATCATTGCAAGGGAGACTATTACAGCTATGAGAAAAAATGTTCTTGCCAAGTGTTATGGTGGTGATATTACACGAAAGAAGAAGCTTTTGGAGAAGCAAAAGGAAGGGAAAAAGCGAATGAAACGTGTTGGTTCCGTTGATGTACCACAAGAAGCGTTCCATGAACTATTGAAGGTTTCGTAG

Protein sequence

>Msa1350880

HIISTVPTVPYIYEYSDGSKLEVQNPAALPSNPKQRVVACWEPTVIATIVMPSEYVGPVITLLSERRGEQLEYSFIDSQRVFMKYRLPLREIVIDFYNELKSITSGYASFDYEDSDYQPSDLVKLDILLNGQAVDAMATIVHNSKSYRVGRELVEKLKKVIDRQMFEIIIQAAIGSKIIARETITAMRKNVLAKCYGGDITRKKKLLEKQKEGKKRMKRVGSVDVPQEAFHELLKVS*