AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0063530

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0063530 MtrunA17_Chr1g0165031 95.258 949 15 2 1 919 597 1545 0.0 1882
Msa0063530 MtrunA17_Chr5g0400101 27.812 320 201 9 487 799 601 897 1.21e-25 114
Msa0063530 MtrunA17_Chr8g0343741 26.087 598 307 24 271 779 687 1238 4.31e-24 109
Msa0063530 MtrunA17_Chr2g0334291 23.889 540 279 20 312 779 1565 2044 9.51e-20 95.9
Msa0063530 MtrunA17_Chr5g0433361 24.658 584 335 25 262 779 275 819 2.62e-18 90.5
Msa0063530 MtrunA17_Chr3g0109541 30.000 270 154 11 534 787 607 857 4.21e-18 89.7
Msa0063530 MtrunA17_Chr5g0433321 31.923 260 143 14 534 778 584 824 1.49e-16 84.7
Msa0063530 MtrunA17_Chr3g0094211 23.898 590 317 27 283 779 266 816 3.44e-16 83.6
Msa0063530 MtrunA17_Chr5g0433471 27.907 258 159 9 534 779 606 848 3.19e-14 77.4
Msa0063530 MtrunA17_Chr5g0422511 23.782 349 223 12 524 849 473 801 5.39e-14 76.3
Msa0063530 MtrunA17_Chr5g0433421 27.203 261 157 9 534 779 691 933 9.45e-13 72.4
Msa0063530 MtrunA17_Chr5g0433511 28.571 231 141 8 534 755 625 840 5.56e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0063530 AT2G38770.1 79.139 906 167 7 1 894 593 1488 0.0 1495
Msa0063530 AT5G47010.1 29.023 348 203 11 474 799 584 909 1.07e-26 118
Msa0063530 AT4G30100.2 25.763 590 281 26 296 788 661 1190 4.01e-22 103
Msa0063530 AT4G30100.1 25.763 590 281 26 296 788 661 1190 4.01e-22 103
Msa0063530 AT2G19120.1 28.889 315 172 12 483 779 738 1018 1.79e-20 98.2
Msa0063530 AT1G16800.2 29.851 268 154 10 531 779 1716 1968 9.49e-20 96.3
Msa0063530 AT1G16800.3 29.851 268 154 10 531 779 1646 1898 1.05e-19 95.9
Msa0063530 AT1G16800.1 29.851 268 154 10 531 779 1604 1856 1.11e-19 95.9
Msa0063530 AT2G03270.1 27.055 292 176 10 503 780 339 607 1.67e-17 87.8
Msa0063530 AT1G65810.2 29.000 300 178 12 489 779 524 797 5.25e-16 83.6
Msa0063530 AT1G65810.1 29.000 300 178 12 489 779 524 797 5.39e-16 83.6
Msa0063530 AT1G65810.3 29.000 300 178 12 489 779 524 797 6.16e-16 83.2
Msa0063530 AT5G37140.1 27.208 283 164 12 514 779 369 626 8.94e-13 72.8
Msa0063530 AT4G05540.1 22.973 592 347 23 277 779 106 677 1.95e-12 71.6
Msa0063530 AT5G37030.1 27.308 260 167 6 534 783 351 598 2.37e-12 71.2
Msa0063530 AT5G37165.1 27.076 277 176 8 514 778 97 359 5.32e-12 69.3
Msa0063530 AT5G37150.1 27.113 284 184 7 505 779 504 773 8.64e-12 69.7

Find 221 sgRNAs with CRISPR-Local

Find 396 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGTCTCAATTTCTAAAATT+TGG 0.081832 1_2:-24111783 None:intergenic
GCGAAACTGCAGGATATTTC+TGG 0.188431 1_2:+24111383 Msa0063530:CDS
ATGTAATCTCATTCATATTA+AGG 0.195616 1_2:-24112729 None:intergenic
CATCCCATTCAGATCTAATA+TGG 0.219884 1_2:-24108448 None:intergenic
AAAATATTCTCCAACCATTT+AGG 0.222679 1_2:-24108875 None:intergenic
GGTCCATGTGGCTGTACTTT+TGG 0.224138 1_2:-24111915 None:intergenic
CTTAAACGCTGCATTCTAAT+TGG 0.237504 1_2:+24111850 Msa0063530:CDS
ATTCTGCTTCTCCTTCATTT+TGG 0.237813 1_2:-24112182 None:intergenic
TATATATACATGCGTTTATT+GGG 0.239432 1_2:+24112219 Msa0063530:CDS
GGTCAAAATTGATATCTTAT+TGG 0.260516 1_2:-24112250 None:intergenic
AAGCAATCTTAGAATCAATA+AGG 0.263851 1_2:+24108825 Msa0063530:CDS
TTATATATACATGCGTTTAT+TGG 0.269089 1_2:+24112218 Msa0063530:CDS
TTTGGCTGATCTTGAGGATA+TGG 0.275306 1_2:-24109368 None:intergenic
AGTACAGATTTGGTGCAAAA+TGG 0.275971 1_2:+24113805 Msa0063530:CDS
GCTCATAGCACTGTTCAAAA+AGG 0.277665 1_2:-24112660 None:intergenic
AGATATCAATTTGAGCAAAA+TGG 0.284238 1_2:+24113772 Msa0063530:CDS
AGTCTCAATTTCTAAAATTT+GGG 0.285754 1_2:-24111782 None:intergenic
ATTTACCAGGTTTGTCCGTC+TGG 0.289140 1_2:+24111945 Msa0063530:CDS
AATCTAACTGAATTCTGTTT+TGG 0.291465 1_2:-24109386 None:intergenic
GGAAGCAATGGTGCCCTTCC+TGG 0.291739 1_2:+24109239 Msa0063530:CDS
ATTTGAATGAGTAATTATTA+AGG 0.316906 1_2:-24110280 None:intergenic
AATACTGTATTGTTCCTAAA+TGG 0.318763 1_2:+24108861 Msa0063530:CDS
CTTGTGCGCACTCGATTTGT+TGG 0.322596 1_2:+24112559 Msa0063530:CDS
GAAAGACATGCGGGCTGCTT+TGG 0.323782 1_2:+24111552 Msa0063530:CDS
GGGAGGGCAGTGTCTACTTC+TGG 0.333773 1_2:+24109260 Msa0063530:CDS
AAAGACATGCGGGCTGCTTT+GGG 0.343376 1_2:+24111553 Msa0063530:CDS
ACTGTTCTCAATTCTCCCTT+TGG 0.348326 1_2:-24108677 None:intergenic
ATCTTTAGTAAGTACAGATT+TGG 0.349280 1_2:+24113795 Msa0063530:CDS
GATCACTTGAAAGGAAGTTT+TGG 0.352256 1_2:+24109001 Msa0063530:CDS
TCTTCAGTTGCCAGAGGATG+TGG 0.355608 1_2:+24111351 Msa0063530:CDS
GTATCTCCAGTTGTAAAGTT+TGG 0.357332 1_2:-24112019 None:intergenic
TTATCTTCTTCGACTTGGTC+AGG 0.359400 1_2:+24111219 Msa0063530:CDS
GGTGCACCAATGAAGTTATA+TGG 0.364085 1_2:-24112327 None:intergenic
AGGAGGAAGCAATATTCAAT+AGG 0.364591 1_2:+24112070 Msa0063530:CDS
CCTGCATTATCTTCTCAAAT+AGG 0.366357 1_2:-24110317 None:intergenic
CATTGCTTCCTTTGAGCGTC+CGG 0.366883 1_2:-24109226 None:intergenic
CCTGGCCTAACTATGGTTGT+TGG 0.390401 1_2:+24110180 Msa0063530:CDS
GAGAACAGTAACAGTGGCTT+TGG 0.392350 1_2:+24108691 Msa0063530:CDS
TGTGTTCCATATAACTTCAT+TGG 0.394771 1_2:+24112321 Msa0063530:CDS
TGCTTATGATTATCAGTTAG+TGG 0.395117 1_2:+24112107 Msa0063530:CDS
GTCAATAACATTGCTGAGAA+AGG 0.395791 1_2:+24108737 Msa0063530:CDS
CGTGGCCATCCTCCTGCCTC+TGG 0.397989 1_2:-24111822 None:intergenic
TAAGTATGACAACTTGTTGA+TGG 0.400897 1_2:+24111750 Msa0063530:CDS
CATCGCGGATGAGAAGTTTC+TGG 0.404957 1_2:-24112284 None:intergenic
TGAGCATTTAGTTCAATGTA+AGG 0.411732 1_2:-24111973 None:intergenic
CTGGCCTAACTATGGTTGTT+GGG 0.416238 1_2:+24110181 Msa0063530:CDS
GAACGGAATGCTGAAGATCC+TGG 0.416547 1_2:+24112760 Msa0063530:CDS
ACACCACATCCTGTATTTAC+CGG 0.417281 1_2:+24111517 Msa0063530:CDS
TATCATAGACAGGTTATATC+AGG 0.420244 1_2:+24112831 Msa0063530:CDS
TATTCAGCCTGGCCTAACTA+TGG 0.423412 1_2:+24110173 Msa0063530:CDS
GCATAGCCAAACTTTACAAC+TGG 0.432535 1_2:+24112013 Msa0063530:CDS
GTTCTCAATTCTCCCTTTGG+TGG 0.435964 1_2:-24108674 None:intergenic
TGTAATCTCATTCATATTAA+GGG 0.437473 1_2:-24112728 None:intergenic
ATATTAAGGGCAAGATGGTC+TGG 0.442030 1_2:-24112715 None:intergenic
TGCTTCATGTTTATTCACGC+TGG 0.452201 1_2:+24111407 Msa0063530:CDS
TTCAAGAACTTGAAGAGTGC+CGG 0.453840 1_2:+24111602 Msa0063530:CDS
TTGTAAAGTTTGGCTATGCT+TGG 0.457112 1_2:-24112009 None:intergenic
GCCATGTCACGTGCTCGGCT+TGG 0.458233 1_2:+24112613 Msa0063530:CDS
GTACAGATTTGGTGCAAAAT+GGG 0.459759 1_2:+24113806 Msa0063530:CDS
ATTGCTTCCTTTGAGCGTCC+GGG 0.461938 1_2:-24109225 None:intergenic
ACTATGGTTGTTGGGCCACC+TGG 0.464470 1_2:+24110189 Msa0063530:CDS
GCCCGTTATCTTCTTCGACT+TGG 0.467727 1_2:+24111214 Msa0063530:CDS
TCTACTGTTTCTAATAGATC+AGG 0.468253 1_2:-24108953 None:intergenic
CAAGTGTAACCCACATCCTC+TGG 0.470878 1_2:-24111361 None:intergenic
GGAGGAAGCAATATTCAATA+GGG 0.473734 1_2:+24112071 Msa0063530:CDS
TCATCCGCGATGTTATAAAC+AGG 0.474307 1_2:+24112295 Msa0063530:CDS
TGCAGCAAAGGATGTCAATA+TGG 0.475642 1_2:+24109283 Msa0063530:CDS
GCACTAAGAGGCTCAAATGA+TGG 0.475916 1_2:-24108512 None:intergenic
AAAATTGATATCTTATTGGC+AGG 0.475931 1_2:-24112246 None:intergenic
CAGGTTGAAGCAATAATATC+AGG 0.476624 1_2:+24110150 Msa0063530:intron
TGAGGATATGGACCAGGGTC+AGG 0.476639 1_2:-24109356 None:intergenic
GCAGATGCTCAGTGGACTAG+TGG 0.478137 1_2:+24108917 Msa0063530:CDS
GTGGCCCAACAACCATAGTT+AGG 0.478875 1_2:-24110185 None:intergenic
TTTACCAGGTTTGTCCGTCT+GGG 0.479385 1_2:+24111946 Msa0063530:CDS
GTTGTTGGGCCACCTGGTAC+AGG 0.480010 1_2:+24110195 Msa0063530:CDS
TCAATAACATTGCTGAGAAA+GGG 0.481822 1_2:+24108738 Msa0063530:CDS
GTAGTGCTGGTGTTGAAAAC+GGG 0.484324 1_2:+24113944 Msa0063530:CDS
ATTGCTTCCTCCTTTAGATA+AGG 0.484399 1_2:-24112060 None:intergenic
AGCAATCTTAGAATCAATAA+GGG 0.485375 1_2:+24108826 Msa0063530:CDS
TTTGGTAAAACCATGGAGAT+GGG 0.486024 1_2:-24112164 None:intergenic
ATTGAGATTCATGATGAAGA+AGG 0.486310 1_2:+24108602 Msa0063530:CDS
ATCCCATATTAGATCTGAAT+GGG 0.488174 1_2:+24108445 None:intergenic
AAAGACTCACCGGTAAATAC+AGG 0.490490 1_2:-24111526 None:intergenic
GTATCAGTCTTTCCTGTACC+AGG 0.493692 1_2:-24110207 None:intergenic
GTAAAATTAAGCGGGAGGAT+TGG 0.494220 1_2:+24108648 Msa0063530:CDS
TTTCCTCTTTAGAGCGGCAT+GGG 0.495563 1_2:-24111707 None:intergenic
CACTAAGAGGCTCAAATGAT+GGG 0.495667 1_2:-24108511 None:intergenic
GGGAGACCTTCCTTATCTAA+AGG 0.497206 1_2:+24112050 Msa0063530:CDS
ACCAAGTCGAAGAAGATAAC+GGG 0.497983 1_2:-24111215 None:intergenic
GTACCCATGCCGCTCTAAAG+AGG 0.501999 1_2:+24111704 Msa0063530:CDS
GAAGCAATGGTGCCCTTCCT+GGG 0.504053 1_2:+24109240 Msa0063530:CDS
AAGCTTCCCCGGACGCTCAA+AGG 0.504408 1_2:+24109218 Msa0063530:CDS
ATGCTGAAGATCCTGGGCCC+AGG 0.504691 1_2:+24112767 Msa0063530:CDS
CAAGTGATCCGCATCTAAGA+AGG 0.505286 1_2:-24108987 None:intergenic
GTCTACTTCTGGTGCAGCAA+AGG 0.508434 1_2:+24109271 Msa0063530:CDS
ATTATTAAGGTTCTCTGAGA+AGG 0.508810 1_2:-24110267 None:intergenic
GACGAGATGTACATGATGCC+TGG 0.509689 1_2:-24112785 None:intergenic
CAACTGGAGATACAGAGACT+TGG 0.510117 1_2:+24112029 Msa0063530:CDS
GCCAGTGTGCCACAGAAGCT+TGG 0.511532 1_2:+24108551 Msa0063530:CDS
GCTTCATGTTTATTCACGCT+GGG 0.514306 1_2:+24111408 Msa0063530:CDS
CTAGTCCACTGAGCATCTGC+AGG 0.515550 1_2:-24108914 None:intergenic
CTTTCCTCTTTAGAGCGGCA+TGG 0.515902 1_2:-24111708 None:intergenic
TCCAATGTTACTCCAGAGGC+AGG 0.516206 1_2:+24111810 Msa0063530:CDS
AAGTTTCTGGCCATTGTAAG+TGG 0.517070 1_2:-24112271 None:intergenic
GATCCCATATTAGATCTGAA+TGG 0.517346 1_2:+24108444 None:intergenic
TTGAGAAGAAGCTGAAATGT+AGG 0.517377 1_2:-24112688 None:intergenic
TGTTCCAGATCACAATGGTA+AGG 0.517798 1_2:+24112131 Msa0063530:CDS
AACGGAATGCTGAAGATCCT+GGG 0.517993 1_2:+24112761 Msa0063530:CDS
GCTTGGCCTACAGTATGTGC+GGG 0.520552 1_2:+24108568 Msa0063530:CDS
TCAAGAACTTGAAGAGTGCC+GGG 0.522227 1_2:+24111603 Msa0063530:CDS
GTACATTTAATGTGTTAATG+AGG 0.522288 1_2:+24108777 Msa0063530:CDS
CTTCCTCCTTTAGATAAGGA+AGG 0.524735 1_2:-24112056 None:intergenic
GCTACAGTGGATAAGTTTCA+AGG 0.525311 1_2:+24112508 Msa0063530:CDS
CTGTATTGTTCCTAAATGGT+TGG 0.527007 1_2:+24108865 Msa0063530:CDS
TGGACCAGAGTTTATTTACC+AGG 0.527279 1_2:+24111932 Msa0063530:CDS
GGTAGTGCTGGTGTTGAAAA+CGG 0.529558 1_2:+24113943 Msa0063530:CDS
TATCTTCTTCGACTTGGTCA+GGG 0.529957 1_2:+24111220 Msa0063530:CDS
TAACTACTTAATGACTAAGC+AGG 0.530588 1_2:+24111660 Msa0063530:CDS
TACTGTAGGCCAAGCTTCTG+TGG 0.531959 1_2:-24108560 None:intergenic
TCCTGCCTCTGGAGTAACAT+TGG 0.533125 1_2:-24111811 None:intergenic
GCCAAGCTTCTGTGGCACAC+TGG 0.534675 1_2:-24108552 None:intergenic
GTCTTTCTCAAAAGACTCAC+CGG 0.538468 1_2:-24111536 None:intergenic
AACTGGAGATACAGAGACTT+GGG 0.538695 1_2:+24112030 Msa0063530:CDS
TGTACATGATGCCTGGGCCC+AGG 0.539099 1_2:-24112778 None:intergenic
TGGTTGCCATGTCACGTGCT+CGG 0.540196 1_2:+24112608 Msa0063530:CDS
ATATTCAATAGGGCAAATGC+TGG 0.543658 1_2:+24112081 Msa0063530:CDS
GACCAAGTCGAAGAAGATAA+CGG 0.549926 1_2:-24111216 None:intergenic
ATCCCATTCAGATCTAATAT+GGG 0.551159 1_2:-24108447 None:intergenic
TGATCTTGAGGATATGGACC+AGG 0.551162 1_2:-24109362 None:intergenic
CTTCATTGGTGCACCAAGCA+AGG 0.552233 1_2:+24112335 Msa0063530:CDS
AGATGAGTAGTATCATAGAC+AGG 0.552264 1_2:+24112821 Msa0063530:CDS
TACATTGAACTAAATGCTCA+AGG 0.553972 1_2:+24111976 Msa0063530:CDS
CAGATGCTCAGTGGACTAGT+GGG 0.554222 1_2:+24108918 Msa0063530:CDS
TTAGATGCGGATCACTTGAA+AGG 0.556234 1_2:+24108992 Msa0063530:CDS
TTGAGATTCATGATGAAGAA+GGG 0.556888 1_2:+24108603 Msa0063530:CDS
GATGCATAACATACCTTGCT+TGG 0.557072 1_2:-24112348 None:intergenic
CAAAGATACCTTCTTAGATG+CGG 0.557198 1_2:+24108979 Msa0063530:CDS
GTCACCTACGTGATGTAAGA+AGG 0.558318 1_2:+24112581 Msa0063530:CDS
GAGGATGGTACTATAGTTGA+CGG 0.558663 1_2:+24113922 Msa0063530:CDS
GGCAGGAGGATGGCCACGCA+CGG 0.559006 1_2:+24111827 Msa0063530:CDS
AAACGATCTCGAACAAATGT+TGG 0.559115 1_2:-24111469 None:intergenic
CAATGGTGCCCTTCCTGGGA+GGG 0.561003 1_2:+24109244 Msa0063530:CDS
AGGAAAGATTTCCTTCAGCT+AGG 0.561867 1_2:+24111724 Msa0063530:CDS
GAAGTAGACACTGCCCTCCC+AGG 0.562813 1_2:-24109257 None:intergenic
CATTCATATTAAGGGCAAGA+TGG 0.564802 1_2:-24112720 None:intergenic
AGCTTGGCCTACAGTATGTG+CGG 0.568203 1_2:+24108567 Msa0063530:CDS
TCCTCCACGCTCCTTTCAGA+TGG 0.573685 1_2:-24113904 None:intergenic
ATAATATCAGGTATTCAGCC+TGG 0.573939 1_2:+24110162 Msa0063530:CDS
GACTAAGCAGGCTAAGATTG+TGG 0.575583 1_2:+24111672 Msa0063530:CDS
GTTCCAGATCACAATGGTAA+GGG 0.576596 1_2:+24112132 Msa0063530:CDS
ATATATACATGCGTTTATTG+GGG 0.577074 1_2:+24112220 Msa0063530:CDS
TAGACACTGCCCTCCCAGGA+AGG 0.579738 1_2:-24109253 None:intergenic
GGTTACACTTGCGAAACTGC+AGG 0.581114 1_2:+24111373 Msa0063530:CDS
TCACAGAAGAACTCTTTGAA+AGG 0.581302 1_2:-24111493 None:intergenic
ACTGTTTCAGGTTGCTACAG+TGG 0.581829 1_2:+24112495 Msa0063530:intron
CCAACAACCATAGTTAGGCC+AGG 0.582976 1_2:-24110180 None:intergenic
TTCTGGTAAAATTAAGCGGG+AGG 0.585398 1_2:+24108643 Msa0063530:CDS
GTTAGAACTGCTAAGTGAAG+TGG 0.587442 1_2:+24111312 Msa0063530:CDS
ACTATAGTTGACGGTAGTGC+TGG 0.587620 1_2:+24113931 Msa0063530:CDS
ACCAAGCCGAGCACGTGACA+TGG 0.591756 1_2:-24112614 None:intergenic
GAGGATTGGAAGCCACCAAA+GGG 0.591805 1_2:+24108662 Msa0063530:CDS
CCTATTTGAGAAGATAATGC+AGG 0.592607 1_2:+24110317 Msa0063530:CDS
ACTTCAGTAATTCAAAAGCC+CGG 0.593711 1_2:-24111621 None:intergenic
CAAACCTGGTAAATAAACTC+TGG 0.594174 1_2:-24111936 None:intergenic
AGTTAGATTTACAGCCACAC+AGG 0.595048 1_2:+24109400 Msa0063530:CDS
TCACCGGTAAATACAGGATG+TGG 0.597574 1_2:-24111520 None:intergenic
CAATAACATTGCTGAGAAAG+GGG 0.598145 1_2:+24108739 Msa0063530:CDS
CTTGGCCTACAGTATGTGCG+GGG 0.599677 1_2:+24108569 Msa0063530:CDS
CATACTTAAAACCTAGCTGA+AGG 0.600696 1_2:-24111735 None:intergenic
GGGAGACAACCCCATCTCCA+TGG 0.600824 1_2:+24112154 Msa0063530:CDS
AATGCCCAGACGGACAAACC+TGG 0.602316 1_2:-24111950 None:intergenic
CCTACGTGATGTAAGAAGGT+TGG 0.602582 1_2:+24112585 Msa0063530:CDS
GAAATCTTTCCTCTTTAGAG+CGG 0.602945 1_2:-24111713 None:intergenic
TTGCTTCCTTTGAGCGTCCG+GGG 0.604571 1_2:-24109224 None:intergenic
TTCCAGATCACAATGGTAAG+GGG 0.604917 1_2:+24112133 Msa0063530:CDS
CGGACGCTCAAAGGAAGCAA+TGG 0.604975 1_2:+24109227 Msa0063530:CDS
CTTCAGTTGCCAGAGGATGT+GGG 0.605723 1_2:+24111352 Msa0063530:CDS
TTGGTAAAACCATGGAGATG+GGG 0.605873 1_2:-24112163 None:intergenic
AAGACATGCGGGCTGCTTTG+GGG 0.606010 1_2:+24111554 Msa0063530:CDS
TTACTCCAGAGGCAGGAGGA+TGG 0.612211 1_2:+24111817 Msa0063530:CDS
CTAGAGATATACCATCTGAA+AGG 0.613321 1_2:+24113893 Msa0063530:CDS
GGAGGATTGGAAGCCACCAA+AGG 0.613750 1_2:+24108661 Msa0063530:CDS
TCTGAAAGGAGCGTGGAGGA+TGG 0.614687 1_2:+24113907 Msa0063530:CDS
ACATATACTCCTCCTGACCC+TGG 0.622970 1_2:+24109344 Msa0063530:CDS
AGACACTGCCCTCCCAGGAA+GGG 0.626162 1_2:-24109252 None:intergenic
TCATTCCAATGTTACTCCAG+AGG 0.626432 1_2:+24111806 Msa0063530:CDS
AGACCTTCCTTATCTAAAGG+AGG 0.627240 1_2:+24112053 Msa0063530:CDS
CAATGTAAGGAATGCCCAGA+CGG 0.630934 1_2:-24111960 None:intergenic
AACTGCTAAGTGAAGTGGAG+AGG 0.633340 1_2:+24111317 Msa0063530:CDS
ACGAGATGTACATGATGCCT+GGG 0.633458 1_2:-24112784 None:intergenic
TCAATGCTATGCTTGTTAGA+CGG 0.637270 1_2:+24111290 Msa0063530:CDS
AGATTACATCATATACTGAA+CGG 0.640241 1_2:+24112743 Msa0063530:CDS
GCAATGGTGCCCTTCCTGGG+AGG 0.642579 1_2:+24109243 Msa0063530:CDS
GGATATGGACCAGGGTCAGG+AGG 0.645150 1_2:-24109353 None:intergenic
TGCAGCGTTTAAGCCGTGCG+TGG 0.645821 1_2:-24111840 None:intergenic
GGGATCCTGCAGATGCTCAG+TGG 0.646270 1_2:+24108909 Msa0063530:CDS
AGTCGAAGAAGATAACGGGC+AGG 0.648635 1_2:-24111211 None:intergenic
AATAACATTGCTGAGAAAGG+GGG 0.651158 1_2:+24108740 Msa0063530:CDS
ACGTGATGTAAGAAGGTTGG+TGG 0.657735 1_2:+24112588 Msa0063530:CDS
CATCATGTACATCTCGTCAG+TGG 0.661546 1_2:+24112790 Msa0063530:CDS
TCCAGATCACAATGGTAAGG+GGG 0.664586 1_2:+24112134 Msa0063530:CDS
TATACCATCTGAAAGGAGCG+TGG 0.665298 1_2:+24113900 Msa0063530:CDS
GCAAAATGGGCAGCAGAATG+CGG 0.665323 1_2:+24113819 Msa0063530:CDS
TCAGTCTTTCCTGTACCAGG+TGG 0.665352 1_2:-24110204 None:intergenic
GGATACAGCGCAGTACCACA+TGG 0.669205 1_2:+24108712 Msa0063530:CDS
TAGATCTCTTCAGTTGCCAG+AGG 0.670747 1_2:+24111345 Msa0063530:CDS
GATGATAAGCAACATGAAAG+CGG 0.677119 1_2:+24113841 Msa0063530:CDS
ATGGTATATCTCTAGCAACA+TGG 0.677182 1_2:-24113885 None:intergenic
AATGTTACTCCAGAGGCAGG+AGG 0.677544 1_2:+24111813 Msa0063530:CDS
TTTCCAAAAGTACAGCCACA+TGG 0.679818 1_2:+24111912 Msa0063530:CDS
TTGGCCTACAGTATGTGCGG+GGG 0.686731 1_2:+24108570 Msa0063530:CDS
TAAATAAACTCTGGTCCATG+TGG 0.686869 1_2:-24111927 None:intergenic
ACCATCTGAAAGGAGCGTGG+AGG 0.693993 1_2:+24113903 Msa0063530:CDS
AAGAGCTGAGTGCACCTGTG+TGG 0.695278 1_2:-24109414 None:intergenic
AGAATTGAGAACAGTAACAG+TGG 0.697015 1_2:+24108685 Msa0063530:CDS
ATCTCCTGTTTATAACATCG+CGG 0.701908 1_2:-24112299 None:intergenic
GATCTTGAGGATATGGACCA+GGG 0.719600 1_2:-24109361 None:intergenic
GTGGATGTTCCAGATCACAA+TGG 0.724646 1_2:+24112126 Msa0063530:CDS
CAATGTTATTGACATCCATG+TGG 0.728897 1_2:-24108727 None:intergenic
TAAATGCTCAAGGAAGAGCG+AGG 0.743780 1_2:+24111986 Msa0063530:CDS
CCAACCTTCTTACATCACGT+AGG 0.785989 1_2:-24112585 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATTTATTTTTTGCAT+TGG + chr1_2:24109070-24109089 Msa0063530:intron 10.0%
!!! TTTTATTTATTTTTTGCATT+GGG + chr1_2:24109071-24109090 Msa0063530:intron 10.0%
!!! CTAATAATTAATTTTATTGA+CGG + chr1_2:24111035-24111054 Msa0063530:intron 10.0%
!!! TCTTTTATAAAAAAGATATT+CGG - chr1_2:24113265-24113284 None:intergenic 10.0%
!!! AATAATTCATTGATTTTTTT+AGG - chr1_2:24113730-24113749 None:intergenic 10.0%
!!! AGCTTTGTTTTTTATATTTT+GGG + chr1_2:24109848-24109867 Msa0063530:intron 15.0%
!! ATTTGAATGAGTAATTATTA+AGG - chr1_2:24110283-24110302 None:intergenic 15.0%
!! TTCATTAAAGAAATCATTAA+TGG - chr1_2:24112405-24112424 None:intergenic 15.0%
!!! ATTTTTCTGGTAAAATTAAG+CGG + chr1_2:24108639-24108658 Msa0063530:CDS 20.0%
!!! AGAATATTTTTCTTGGTTAT+GGG + chr1_2:24108888-24108907 Msa0063530:CDS 20.0%
!!! CAGCTTTGTTTTTTATATTT+TGG + chr1_2:24109847-24109866 Msa0063530:intron 20.0%
!! TTAAGATATTACATGCATAA+TGG - chr1_2:24110614-24110633 None:intergenic 20.0%
!! AACTTACATAATACAATTTC+TGG + chr1_2:24110864-24110883 Msa0063530:intron 20.0%
!!! AGTCTCAATTTCTAAAATTT+GGG - chr1_2:24111785-24111804 None:intergenic 20.0%
!!! AAGTCTCAATTTCTAAAATT+TGG - chr1_2:24111786-24111805 None:intergenic 20.0%
!! TTATATATACATGCGTTTAT+TGG + chr1_2:24112218-24112237 Msa0063530:CDS 20.0%
!! TATATATACATGCGTTTATT+GGG + chr1_2:24112219-24112238 Msa0063530:CDS 20.0%
!! AATGATTTCTTTAATGAAGA+CGG + chr1_2:24112407-24112426 Msa0063530:intron 20.0%
!! TGTAATCTCATTCATATTAA+GGG - chr1_2:24112731-24112750 None:intergenic 20.0%
!! ATGTAATCTCATTCATATTA+AGG - chr1_2:24112732-24112751 None:intergenic 20.0%
!! TGACAAAAATTGAAAATTGT+AGG + chr1_2:24112915-24112934 Msa0063530:intron 20.0%
!!! TCATTTTATACAAAAAGCAT+AGG - chr1_2:24112972-24112991 None:intergenic 20.0%
!! AAAACAGATCAAATCAAAAT+AGG + chr1_2:24112997-24113016 Msa0063530:intron 20.0%
!! AAACAGATCAAATCAAAATA+GGG + chr1_2:24112998-24113017 Msa0063530:intron 20.0%
!! TCCATCTTTATTATTTATGA+AGG + chr1_2:24113059-24113078 Msa0063530:intron 20.0%
!! ACCTTCATAAATAATAAAGA+TGG - chr1_2:24113063-24113082 None:intergenic 20.0%
!!! TAACTGAAAATCATTTTCTA+AGG - chr1_2:24113229-24113248 None:intergenic 20.0%
!! TCTAATTATCTAATTACAAG+AGG - chr1_2:24113526-24113545 None:intergenic 20.0%
!!! GATTTTATTAGATAGAAGTA+GGG - chr1_2:24113671-24113690 None:intergenic 20.0%
!!! AGATTTTATTAGATAGAAGT+AGG - chr1_2:24113672-24113691 None:intergenic 20.0%
!! TGAATTATTATATTGTTTCC+AGG + chr1_2:24113741-24113760 Msa0063530:intron 20.0%
! ACCAGAAAAATCATTCATAA+GGG - chr1_2:24108630-24108649 None:intergenic 25.0%
! TACCAGAAAAATCATTCATA+AGG - chr1_2:24108631-24108650 None:intergenic 25.0%
!!! TTTTTCTGGTAAAATTAAGC+GGG + chr1_2:24108640-24108659 Msa0063530:CDS 25.0%
! GTACATTTAATGTGTTAATG+AGG + chr1_2:24108777-24108796 Msa0063530:CDS 25.0%
!!! GCTTTAAAGTTGTTTTCTTT+TGG - chr1_2:24108809-24108828 None:intergenic 25.0%
! AAGCAATCTTAGAATCAATA+AGG + chr1_2:24108825-24108844 Msa0063530:CDS 25.0%
! AGCAATCTTAGAATCAATAA+GGG + chr1_2:24108826-24108845 Msa0063530:CDS 25.0%
! AATACTGTATTGTTCCTAAA+TGG + chr1_2:24108861-24108880 Msa0063530:CDS 25.0%
! AAAATATTCTCCAACCATTT+AGG - chr1_2:24108878-24108897 None:intergenic 25.0%
!! GAGAATATTTTTCTTGGTTA+TGG + chr1_2:24108887-24108906 Msa0063530:CDS 25.0%
!! GAATATTTTTCTTGGTTATG+GGG + chr1_2:24108889-24108908 Msa0063530:CDS 25.0%
!!! TAAGATATTGAATTGACTTG+TGG + chr1_2:24109110-24109129 Msa0063530:intron 25.0%
!!! GTTACTTTTGTAAATCATGA+TGG + chr1_2:24109158-24109177 Msa0063530:CDS 25.0%
!! AATCTAACTGAATTCTGTTT+TGG - chr1_2:24109389-24109408 None:intergenic 25.0%
! ATCAAATTTCACTATTCTAC+GGG - chr1_2:24109510-24109529 None:intergenic 25.0%
! CATCAAATTTCACTATTCTA+CGG - chr1_2:24109511-24109530 None:intergenic 25.0%
! TAAGAATAATAGGTCGTATT+TGG - chr1_2:24110007-24110026 None:intergenic 25.0%
! CTAAAAAACGTTGAATATTC+AGG + chr1_2:24110131-24110150 Msa0063530:intron 25.0%
!!! GAATTGTTTAGCTTTTAATG+TGG + chr1_2:24110409-24110428 Msa0063530:intron 25.0%
!! TGGTATTTTATAAGTAGGTT+AGG - chr1_2:24110502-24110521 None:intergenic 25.0%
! GTATTATGTAAGTTACTGAT+TGG - chr1_2:24110858-24110877 None:intergenic 25.0%
!! ATAAACAATAGCAAAGTACT+GGG - chr1_2:24111064-24111083 None:intergenic 25.0%
! GACTCTCAAATTATTAGTAT+AGG - chr1_2:24111101-24111120 None:intergenic 25.0%
! ATATATACATGCGTTTATTG+GGG + chr1_2:24112220-24112239 Msa0063530:CDS 25.0%
! AAAATTGATATCTTATTGGC+AGG - chr1_2:24112249-24112268 None:intergenic 25.0%
! GGTCAAAATTGATATCTTAT+TGG - chr1_2:24112253-24112272 None:intergenic 25.0%
! ATAAACAGGAACGTTATATA+AGG - chr1_2:24112474-24112493 None:intergenic 25.0%
! AGATTACATCATATACTGAA+CGG + chr1_2:24112743-24112762 Msa0063530:CDS 25.0%
! AAATTGAAAATTGTAGGACA+TGG + chr1_2:24112921-24112940 Msa0063530:intron 25.0%
! GTTCTTATGTTAAGATGAAA+TGG - chr1_2:24113311-24113330 None:intergenic 25.0%
! CTCAATTCTTCAACATATTA+GGG + chr1_2:24113375-24113394 Msa0063530:intron 25.0%
!!! ATTGATATCTCATTTTTTCC+TGG - chr1_2:24113762-24113781 None:intergenic 25.0%
! AGATATCAATTTGAGCAAAA+TGG + chr1_2:24113772-24113791 Msa0063530:CDS 25.0%
! ATCTTTAGTAAGTACAGATT+TGG + chr1_2:24113795-24113814 Msa0063530:CDS 25.0%
ATCCCATTCAGATCTAATAT+GGG - chr1_2:24108450-24108469 None:intergenic 30.0%
ATTGAGATTCATGATGAAGA+AGG + chr1_2:24108602-24108621 Msa0063530:CDS 30.0%
TTGAGATTCATGATGAAGAA+GGG + chr1_2:24108603-24108622 Msa0063530:CDS 30.0%
! ACCCTTATGAATGATTTTTC+TGG + chr1_2:24108626-24108645 Msa0063530:CDS 30.0%
TCAATAACATTGCTGAGAAA+GGG + chr1_2:24108738-24108757 Msa0063530:CDS 30.0%
! TGGTTGGAGAATATTTTTCT+TGG + chr1_2:24108881-24108900 Msa0063530:CDS 30.0%
!! TCTACTGTTTCTAATAGATC+AGG - chr1_2:24108956-24108975 None:intergenic 30.0%
!! GAAGCTTGATTTTAAAAGGA+GGG - chr1_2:24109205-24109224 None:intergenic 30.0%
TCAAATTTCACTATTCTACG+GGG - chr1_2:24109509-24109528 None:intergenic 30.0%
CGTAGAATAGTGAAATTTGA+TGG + chr1_2:24109509-24109528 Msa0063530:intron 30.0%
CCATCTCATTCTAAATAACT+TGG - chr1_2:24109538-24109557 None:intergenic 30.0%
! CCAAGTTATTTAGAATGAGA+TGG + chr1_2:24109535-24109554 Msa0063530:intron 30.0%
GTGAGTTGTGATTCAAAATA+TGG - chr1_2:24109649-24109668 None:intergenic 30.0%
ACAATACTGATGATACTCAA+GGG - chr1_2:24109688-24109707 None:intergenic 30.0%
ATCATCAGTATTGTGAAATG+AGG + chr1_2:24109694-24109713 Msa0063530:intron 30.0%
TCATCAGTATTGTGAAATGA+GGG + chr1_2:24109695-24109714 Msa0063530:intron 30.0%
TTTCATGACTCTTGAGTATA+TGG + chr1_2:24109725-24109744 Msa0063530:intron 30.0%
! TCTTTTTGATGTTCTGTTGA+TGG + chr1_2:24109780-24109799 Msa0063530:intron 30.0%
ATTCTATTGGATATCAGTAG+TGG - chr1_2:24109823-24109842 None:intergenic 30.0%
CTACTGATATCCAATAGAAT+TGG + chr1_2:24109823-24109842 Msa0063530:intron 30.0%
!! TTTTATATTTTGGGCCATGT+TGG + chr1_2:24109857-24109876 Msa0063530:intron 30.0%
TGTTTCCTTATCCTTTGATT+TGG + chr1_2:24109911-24109930 Msa0063530:intron 30.0%
AGAGAGAAATGTAGTAAGTA+TGG + chr1_2:24109966-24109985 Msa0063530:intron 30.0%
GAGAGAAATGTAGTAAGTAT+GGG + chr1_2:24109967-24109986 Msa0063530:intron 30.0%
AGAGAAATGTAGTAAGTATG+GGG + chr1_2:24109968-24109987 Msa0063530:intron 30.0%
GTAAATATGAGTGAAGTACA+AGG - chr1_2:24110063-24110082 None:intergenic 30.0%
! ATTATTAAGGTTCTCTGAGA+AGG - chr1_2:24110270-24110289 None:intergenic 30.0%
! GGAACTGGTATTTTATAAGT+AGG - chr1_2:24110507-24110526 None:intergenic 30.0%
!! ATCTCAGTCATTTTCTGAAT+TGG + chr1_2:24111006-24111025 Msa0063530:intron 30.0%
GATAAACAATAGCAAAGTAC+TGG - chr1_2:24111065-24111084 None:intergenic 30.0%
!! TTTGCTATTGTTTATCTCCT+TGG + chr1_2:24111069-24111088 Msa0063530:intron 30.0%
! TTGCTATTGTTTATCTCCTT+GGG + chr1_2:24111070-24111089 Msa0063530:intron 30.0%
ATTAGTATAGGTAAATCCCA+AGG - chr1_2:24111089-24111108 None:intergenic 30.0%
CTAATAATTTGAGAGTCTGA+TGG + chr1_2:24111104-24111123 Msa0063530:intron 30.0%
!! CTACTGATCTTGATTTTAGT+CGG + chr1_2:24111257-24111276 Msa0063530:CDS 30.0%
!!! TGTTGGCTTTTCTTTATTCT+CGG - chr1_2:24111455-24111474 None:intergenic 30.0%
TAACTACTTAATGACTAAGC+AGG + chr1_2:24111660-24111679 Msa0063530:CDS 30.0%
!! TAAGTATGACAACTTGTTGA+TGG + chr1_2:24111750-24111769 Msa0063530:CDS 30.0%
! AAAGCCATATTTTTCACAAC+AGG - chr1_2:24111895-24111914 None:intergenic 30.0%
! TGAGCATTTAGTTCAATGTA+AGG - chr1_2:24111976-24111995 None:intergenic 30.0%
TACATTGAACTAAATGCTCA+AGG + chr1_2:24111976-24111995 Msa0063530:CDS 30.0%
TGCTTATGATTATCAGTTAG+TGG + chr1_2:24112107-24112126 Msa0063530:CDS 30.0%
!! TCAATTTTGACCACTTACAA+TGG + chr1_2:24112261-24112280 Msa0063530:CDS 30.0%
TGTGTTCCATATAACTTCAT+TGG + chr1_2:24112321-24112340 Msa0063530:CDS 30.0%
TATCATAGACAGGTTATATC+AGG + chr1_2:24112831-24112850 Msa0063530:CDS 30.0%
ATAAATTATGAAATGCAGCC+AGG + chr1_2:24113104-24113123 Msa0063530:intron 30.0%
AAATTATATTCACGACCAAC+GGG - chr1_2:24113145-24113164 None:intergenic 30.0%
CAAATTATATTCACGACCAA+CGG - chr1_2:24113146-24113165 None:intergenic 30.0%
AAGAACAGAACATGAAACAA+TGG + chr1_2:24113325-24113344 Msa0063530:intron 30.0%
GCTCAATTCTTCAACATATT+AGG + chr1_2:24113374-24113393 Msa0063530:intron 30.0%
ACAAGAGGCAATACTTTATT+TGG - chr1_2:24113511-24113530 None:intergenic 30.0%
ATTAGATAAGTTTGTGCTAG+TGG + chr1_2:24113576-24113595 Msa0063530:intron 30.0%
TGTATTGTTCTTTGCTTATC+CGG + chr1_2:24113620-24113639 Msa0063530:intron 30.0%
CATCCCATTCAGATCTAATA+TGG - chr1_2:24108451-24108470 None:intergenic 35.0%
! TTTTCTTCTTCTGCACTAAG+AGG - chr1_2:24108527-24108546 None:intergenic 35.0%
AGAATTGAGAACAGTAACAG+TGG + chr1_2:24108685-24108704 Msa0063530:CDS 35.0%
CAATGTTATTGACATCCATG+TGG - chr1_2:24108730-24108749 None:intergenic 35.0%
GTCAATAACATTGCTGAGAA+AGG + chr1_2:24108737-24108756 Msa0063530:CDS 35.0%
CAATAACATTGCTGAGAAAG+GGG + chr1_2:24108739-24108758 Msa0063530:CDS 35.0%
AATAACATTGCTGAGAAAGG+GGG + chr1_2:24108740-24108759 Msa0063530:CDS 35.0%
CTGTATTGTTCCTAAATGGT+TGG + chr1_2:24108865-24108884 Msa0063530:CDS 35.0%
CAAAGATACCTTCTTAGATG+CGG + chr1_2:24108979-24108998 Msa0063530:CDS 35.0%
! GATCACTTGAAAGGAAGTTT+TGG + chr1_2:24109001-24109020 Msa0063530:CDS 35.0%
!! AGGAAGTTTTGGTGATTATG+AGG + chr1_2:24109012-24109031 Msa0063530:CDS 35.0%
!! AGTTTTGGTGATTATGAGGT+TGG + chr1_2:24109016-24109035 Msa0063530:intron 35.0%
ACTTCTTGTCTGTATCTTTC+AGG + chr1_2:24109136-24109155 Msa0063530:intron 35.0%
!! TGATTTTAAAAGGAGGGCTT+GGG - chr1_2:24109199-24109218 None:intergenic 35.0%
!! TTGATTTTAAAAGGAGGGCT+TGG - chr1_2:24109200-24109219 None:intergenic 35.0%
!! GGAAGCTTGATTTTAAAAGG+AGG - chr1_2:24109206-24109225 None:intergenic 35.0%
!!! CTTTTAAAATCAAGCTTCCC+CGG + chr1_2:24109207-24109226 Msa0063530:CDS 35.0%
TGATGATACTCAAGGGAAAT+AGG - chr1_2:24109681-24109700 None:intergenic 35.0%
CACAATACTGATGATACTCA+AGG - chr1_2:24109689-24109708 None:intergenic 35.0%
ACAAAGCTGTCCAATTCTAT+TGG - chr1_2:24109836-24109855 None:intergenic 35.0%
AAAATAACAGCTAGCCAACA+TGG - chr1_2:24109874-24109893 None:intergenic 35.0%
GTGATCCAAATCAAAGGATA+AGG - chr1_2:24109919-24109938 None:intergenic 35.0%
GTCGTATTTGGTAAGAATGT+TGG - chr1_2:24109995-24110014 None:intergenic 35.0%
GAGAGAGACGTAAGAATAAT+AGG - chr1_2:24110017-24110036 None:intergenic 35.0%
ATATGAGTGAAGTACAAGGA+AGG - chr1_2:24110059-24110078 None:intergenic 35.0%
! CAGGTTGAAGCAATAATATC+AGG + chr1_2:24110150-24110169 Msa0063530:intron 35.0%
ATAATATCAGGTATTCAGCC+TGG + chr1_2:24110162-24110181 Msa0063530:CDS 35.0%
CCTGCATTATCTTCTCAAAT+AGG - chr1_2:24110320-24110339 None:intergenic 35.0%
CCTATTTGAGAAGATAATGC+AGG + chr1_2:24110317-24110336 Msa0063530:CDS 35.0%
TGCATGGTGTGTGATATTTA+TGG + chr1_2:24110435-24110454 Msa0063530:intron 35.0%
ATGCAGTTTCGGAAATTACT+GGG + chr1_2:24110527-24110546 Msa0063530:intron 35.0%
CATTTGACAACAAAAGCTCA+TGG - chr1_2:24110640-24110659 None:intergenic 35.0%
ACGCAGTTTAAGAAATTCCT+GGG + chr1_2:24110745-24110764 Msa0063530:intron 35.0%
TCCTTCTGTACAGAAGTTTA+TGG + chr1_2:24111152-24111171 Msa0063530:intron 35.0%
ACCATAAACTTCTGTACAGA+AGG - chr1_2:24111156-24111175 None:intergenic 35.0%
! TCAATGCTATGCTTGTTAGA+CGG + chr1_2:24111290-24111309 Msa0063530:CDS 35.0%
AAACGATCTCGAACAAATGT+TGG - chr1_2:24111472-24111491 None:intergenic 35.0%
TCACAGAAGAACTCTTTGAA+AGG - chr1_2:24111496-24111515 None:intergenic 35.0%
!! AGTCTTTTGAGAAAGACATG+CGG + chr1_2:24111542-24111561 Msa0063530:CDS 35.0%
ACTTCAGTAATTCAAAAGCC+CGG - chr1_2:24111624-24111643 None:intergenic 35.0%
! GAAATCTTTCCTCTTTAGAG+CGG - chr1_2:24111716-24111735 None:intergenic 35.0%
CATACTTAAAACCTAGCTGA+AGG - chr1_2:24111738-24111757 None:intergenic 35.0%
CTTAAACGCTGCATTCTAAT+TGG + chr1_2:24111850-24111869 Msa0063530:CDS 35.0%
TAAATAAACTCTGGTCCATG+TGG - chr1_2:24111930-24111949 None:intergenic 35.0%
CAAACCTGGTAAATAAACTC+TGG - chr1_2:24111939-24111958 None:intergenic 35.0%
TTGTAAAGTTTGGCTATGCT+TGG - chr1_2:24112012-24112031 None:intergenic 35.0%
GTATCTCCAGTTGTAAAGTT+TGG - chr1_2:24112022-24112041 None:intergenic 35.0%
ATTGCTTCCTCCTTTAGATA+AGG - chr1_2:24112063-24112082 None:intergenic 35.0%
AGGAGGAAGCAATATTCAAT+AGG + chr1_2:24112070-24112089 Msa0063530:CDS 35.0%
GGAGGAAGCAATATTCAATA+GGG + chr1_2:24112071-24112090 Msa0063530:CDS 35.0%
ATATTCAATAGGGCAAATGC+TGG + chr1_2:24112081-24112100 Msa0063530:CDS 35.0%
TTTGGTAAAACCATGGAGAT+GGG - chr1_2:24112167-24112186 None:intergenic 35.0%
! TTTTGGTAAAACCATGGAGA+TGG - chr1_2:24112168-24112187 None:intergenic 35.0%
!! CCTTCATTTTGGTAAAACCA+TGG - chr1_2:24112174-24112193 None:intergenic 35.0%
!! CCATGGTTTTACCAAAATGA+AGG + chr1_2:24112171-24112190 Msa0063530:CDS 35.0%
! ATTCTGCTTCTCCTTCATTT+TGG - chr1_2:24112185-24112204 None:intergenic 35.0%
ATCTCCTGTTTATAACATCG+CGG - chr1_2:24112302-24112321 None:intergenic 35.0%
TTCCTGTTTATGACTGTTTC+AGG + chr1_2:24112483-24112502 Msa0063530:intron 35.0%
AACCTGAAACAGTCATAAAC+AGG - chr1_2:24112488-24112507 None:intergenic 35.0%
CTCATAGCACTGTTCAAAAA+GGG - chr1_2:24112662-24112681 None:intergenic 35.0%
TTGAGAAGAAGCTGAAATGT+AGG - chr1_2:24112691-24112710 None:intergenic 35.0%
CATTCATATTAAGGGCAAGA+TGG - chr1_2:24112723-24112742 None:intergenic 35.0%
AGATGAGTAGTATCATAGAC+AGG + chr1_2:24112821-24112840 Msa0063530:CDS 35.0%
! GGTCGTGAATATAATTTGTG+TGG + chr1_2:24113148-24113167 Msa0063530:intron 35.0%
AATGGAAAAGAGCAAATGAG+TGG + chr1_2:24113343-24113362 Msa0063530:intron 35.0%
ACATATTAGGGAAACATCAC+AGG + chr1_2:24113387-24113406 Msa0063530:intron 35.0%
TGCACTACTCTATAGTGTAT+CGG - chr1_2:24113476-24113495 None:intergenic 35.0%
! GCAATACTTTATTTGGCGAT+GGG - chr1_2:24113504-24113523 None:intergenic 35.0%
AGATAATCAGATGTTAGTGC+AGG + chr1_2:24113551-24113570 Msa0063530:intron 35.0%
! TTTGTGCTAGTGGTTTTTGT+TGG + chr1_2:24113586-24113605 Msa0063530:intron 35.0%
!! AGTACAGATTTGGTGCAAAA+TGG + chr1_2:24113805-24113824 Msa0063530:CDS 35.0%
!! GTACAGATTTGGTGCAAAAT+GGG + chr1_2:24113806-24113825 Msa0063530:CDS 35.0%
GATGATAAGCAACATGAAAG+CGG + chr1_2:24113841-24113860 Msa0063530:CDS 35.0%
ATGGTATATCTCTAGCAACA+TGG - chr1_2:24113888-24113907 None:intergenic 35.0%
CTAGAGATATACCATCTGAA+AGG + chr1_2:24113893-24113912 Msa0063530:CDS 35.0%
CACTAAGAGGCTCAAATGAT+GGG - chr1_2:24108514-24108533 None:intergenic 40.0%
TTCTGGTAAAATTAAGCGGG+AGG + chr1_2:24108643-24108662 Msa0063530:CDS 40.0%
GTAAAATTAAGCGGGAGGAT+TGG + chr1_2:24108648-24108667 Msa0063530:CDS 40.0%
ACTGTTCTCAATTCTCCCTT+TGG - chr1_2:24108680-24108699 None:intergenic 40.0%
AAAGGGGGAGAAGATGTTTA+TGG + chr1_2:24108755-24108774 Msa0063530:CDS 40.0%
TTAGATGCGGATCACTTGAA+AGG + chr1_2:24108992-24109011 Msa0063530:CDS 40.0%
! CGGGGAAGCTTGATTTTAAA+AGG - chr1_2:24109209-24109228 None:intergenic 40.0%
TGCAGCAAAGGATGTCAATA+TGG + chr1_2:24109283-24109302 Msa0063530:CDS 40.0%
TTTGGCTGATCTTGAGGATA+TGG - chr1_2:24109371-24109390 None:intergenic 40.0%
!!! TTCTGTTTTGGCTGATCTTG+AGG - chr1_2:24109377-24109396 None:intergenic 40.0%
AGTTAGATTTACAGCCACAC+AGG + chr1_2:24109400-24109419 Msa0063530:CDS 40.0%
TCACTATTCTACGGGGATAA+GGG - chr1_2:24109502-24109521 None:intergenic 40.0%
TTCACTATTCTACGGGGATA+AGG - chr1_2:24109503-24109522 None:intergenic 40.0%
AGCATTGTGCTAGTACTTTG+CGG - chr1_2:24109575-24109594 None:intergenic 40.0%
TAAGGAAACAGCTGATGGAA+AGG - chr1_2:24109901-24109920 None:intergenic 40.0%
AAGGATAAGGAAACAGCTGA+TGG - chr1_2:24109906-24109925 None:intergenic 40.0%
CAGAAGGTGATCCAAATCAA+AGG - chr1_2:24109925-24109944 None:intergenic 40.0%
!!! GCTTTTAATGTGGTGTTGCA+TGG + chr1_2:24110419-24110438 Msa0063530:intron 40.0%
ATAAGTAGGTTAGGCAGATG+TGG - chr1_2:24110493-24110512 None:intergenic 40.0%
ATACCAGTTCCATGCAGTTT+CGG + chr1_2:24110516-24110535 Msa0063530:intron 40.0%
CAGTAATTTCCGAAACTGCA+TGG - chr1_2:24110528-24110547 None:intergenic 40.0%
CATGCAGTTTCGGAAATTAC+TGG + chr1_2:24110526-24110545 Msa0063530:intron 40.0%
TTTCTTAAACTGCGTGGAAC+AGG - chr1_2:24110740-24110759 None:intergenic 40.0%
CAGGAATTTCTTAAACTGCG+TGG - chr1_2:24110746-24110765 None:intergenic 40.0%
CACGCAGTTTAAGAAATTCC+TGG + chr1_2:24110744-24110763 Msa0063530:intron 40.0%
TTCCTGGGCTACATCATTAT+TGG + chr1_2:24110760-24110779 Msa0063530:intron 40.0%
ATCCAATAATGATGTAGCCC+AGG - chr1_2:24110765-24110784 None:intergenic 40.0%
ACCAAGTCGAAGAAGATAAC+GGG - chr1_2:24111218-24111237 None:intergenic 40.0%
GACCAAGTCGAAGAAGATAA+CGG - chr1_2:24111219-24111238 None:intergenic 40.0%
!! TTATCTTCTTCGACTTGGTC+AGG + chr1_2:24111219-24111238 Msa0063530:CDS 40.0%
!! TATCTTCTTCGACTTGGTCA+GGG + chr1_2:24111220-24111239 Msa0063530:CDS 40.0%
!! GATCTTGATTTTAGTCGGCA+AGG + chr1_2:24111262-24111281 Msa0063530:CDS 40.0%
GTTAGAACTGCTAAGTGAAG+TGG + chr1_2:24111312-24111331 Msa0063530:CDS 40.0%
TGCTTCATGTTTATTCACGC+TGG + chr1_2:24111407-24111426 Msa0063530:CDS 40.0%
GCTTCATGTTTATTCACGCT+GGG + chr1_2:24111408-24111427 Msa0063530:CDS 40.0%
ACACCACATCCTGTATTTAC+CGG + chr1_2:24111517-24111536 Msa0063530:CDS 40.0%
AAAGACTCACCGGTAAATAC+AGG - chr1_2:24111529-24111548 None:intergenic 40.0%
GTCTTTCTCAAAAGACTCAC+CGG - chr1_2:24111539-24111558 None:intergenic 40.0%
!! GTCTTTTGAGAAAGACATGC+GGG + chr1_2:24111543-24111562 Msa0063530:CDS 40.0%
! TTCAAGAACTTGAAGAGTGC+CGG + chr1_2:24111602-24111621 Msa0063530:CDS 40.0%
AGGAAAGATTTCCTTCAGCT+AGG + chr1_2:24111724-24111743 Msa0063530:CDS 40.0%
TCATTCCAATGTTACTCCAG+AGG + chr1_2:24111806-24111825 Msa0063530:CDS 40.0%
GCCTCCTGTTGTGAAAAATA+TGG + chr1_2:24111888-24111907 Msa0063530:CDS 40.0%
! GCCATATTTTTCACAACAGG+AGG - chr1_2:24111892-24111911 None:intergenic 40.0%
! TTTCCAAAAGTACAGCCACA+TGG + chr1_2:24111912-24111931 Msa0063530:CDS 40.0%
TGGACCAGAGTTTATTTACC+AGG + chr1_2:24111932-24111951 Msa0063530:CDS 40.0%
GCATAGCCAAACTTTACAAC+TGG + chr1_2:24112013-24112032 Msa0063530:CDS 40.0%
AACTGGAGATACAGAGACTT+GGG + chr1_2:24112030-24112049 Msa0063530:CDS 40.0%
AGACCTTCCTTATCTAAAGG+AGG + chr1_2:24112053-24112072 Msa0063530:CDS 40.0%
CTTCCTCCTTTAGATAAGGA+AGG - chr1_2:24112059-24112078 None:intergenic 40.0%
TGTTCCAGATCACAATGGTA+AGG + chr1_2:24112131-24112150 Msa0063530:CDS 40.0%
GTTCCAGATCACAATGGTAA+GGG + chr1_2:24112132-24112151 Msa0063530:CDS 40.0%
TTCCAGATCACAATGGTAAG+GGG + chr1_2:24112133-24112152 Msa0063530:CDS 40.0%
TTGGTAAAACCATGGAGATG+GGG - chr1_2:24112166-24112185 None:intergenic 40.0%
!! AAGTTTCTGGCCATTGTAAG+TGG - chr1_2:24112274-24112293 None:intergenic 40.0%
TCATCCGCGATGTTATAAAC+AGG + chr1_2:24112295-24112314 Msa0063530:CDS 40.0%
GGTGCACCAATGAAGTTATA+TGG - chr1_2:24112330-24112349 None:intergenic 40.0%
GATGCATAACATACCTTGCT+TGG - chr1_2:24112351-24112370 None:intergenic 40.0%
GCTACAGTGGATAAGTTTCA+AGG + chr1_2:24112508-24112527 Msa0063530:CDS 40.0%
AGCACTGTTCAAAAAGGGAA+CGG - chr1_2:24112657-24112676 None:intergenic 40.0%
GCTCATAGCACTGTTCAAAA+AGG - chr1_2:24112663-24112682 None:intergenic 40.0%
ATATTAAGGGCAAGATGGTC+TGG - chr1_2:24112718-24112737 None:intergenic 40.0%
CAGATACGTTATGACACACA+AGG + chr1_2:24112889-24112908 Msa0063530:intron 40.0%
GATTACACCAAATAGAAGCG+TGG + chr1_2:24113417-24113436 Msa0063530:intron 40.0%
! GGCAATACTTTATTTGGCGA+TGG - chr1_2:24113505-24113524 None:intergenic 40.0%
GAGGATGGTACTATAGTTGA+CGG + chr1_2:24113922-24113941 Msa0063530:CDS 40.0%
GCACTAAGAGGCTCAAATGA+TGG - chr1_2:24108515-24108534 None:intergenic 45.0%
GTTCTCAATTCTCCCTTTGG+TGG - chr1_2:24108677-24108696 None:intergenic 45.0%
GAGAACAGTAACAGTGGCTT+TGG + chr1_2:24108691-24108710 Msa0063530:CDS 45.0%
CAAGTGATCCGCATCTAAGA+AGG - chr1_2:24108990-24109009 None:intergenic 45.0%
GATCTTGAGGATATGGACCA+GGG - chr1_2:24109364-24109383 None:intergenic 45.0%
TGATCTTGAGGATATGGACC+AGG - chr1_2:24109365-24109384 None:intergenic 45.0%
ACTATTCTACGGGGATAAGG+GGG - chr1_2:24109500-24109519 None:intergenic 45.0%
CACTATTCTACGGGGATAAG+GGG - chr1_2:24109501-24109520 None:intergenic 45.0%
ATTGTGCTAGTACTTTGCGG+AGG - chr1_2:24109572-24109591 None:intergenic 45.0%
TTCTCTCTCTAACTGCACCT+CGG - chr1_2:24109954-24109973 None:intergenic 45.0%
TATTCAGCCTGGCCTAACTA+TGG + chr1_2:24110173-24110192 Msa0063530:CDS 45.0%
CTGGCCTAACTATGGTTGTT+GGG + chr1_2:24110181-24110200 Msa0063530:CDS 45.0%
GTATCAGTCTTTCCTGTACC+AGG - chr1_2:24110210-24110229 None:intergenic 45.0%
TGTGGAATAAGGTTCAGCGT+AGG - chr1_2:24110475-24110494 None:intergenic 45.0%
GGTTAGGCAGATGTGGAATA+AGG - chr1_2:24110486-24110505 None:intergenic 45.0%
TTTCCGAAACTGCATGGAAC+TGG - chr1_2:24110522-24110541 None:intergenic 45.0%
! TGAGCTGAGTCTTGTAGCAA+AGG + chr1_2:24110588-24110607 Msa0063530:intron 45.0%
AACTGCTAAGTGAAGTGGAG+AGG + chr1_2:24111317-24111336 Msa0063530:CDS 45.0%
TAGATCTCTTCAGTTGCCAG+AGG + chr1_2:24111345-24111364 Msa0063530:CDS 45.0%
GCGAAACTGCAGGATATTTC+TGG + chr1_2:24111383-24111402 Msa0063530:CDS 45.0%
TCACCGGTAAATACAGGATG+TGG - chr1_2:24111523-24111542 None:intergenic 45.0%
!! TCAAGAACTTGAAGAGTGCC+GGG + chr1_2:24111603-24111622 Msa0063530:CDS 45.0%
GACTAAGCAGGCTAAGATTG+TGG + chr1_2:24111672-24111691 Msa0063530:CDS 45.0%
!! TTTCCTCTTTAGAGCGGCAT+GGG - chr1_2:24111710-24111729 None:intergenic 45.0%
! TTTTCACAACAGGAGGCAGT+TGG - chr1_2:24111885-24111904 None:intergenic 45.0%
ATTTACCAGGTTTGTCCGTC+TGG + chr1_2:24111945-24111964 Msa0063530:CDS 45.0%
TTTACCAGGTTTGTCCGTCT+GGG + chr1_2:24111946-24111965 Msa0063530:CDS 45.0%
CAATGTAAGGAATGCCCAGA+CGG - chr1_2:24111963-24111982 None:intergenic 45.0%
TAAATGCTCAAGGAAGAGCG+AGG + chr1_2:24111986-24112005 Msa0063530:CDS 45.0%
CAACTGGAGATACAGAGACT+TGG + chr1_2:24112029-24112048 Msa0063530:CDS 45.0%
GGGAGACCTTCCTTATCTAA+AGG + chr1_2:24112050-24112069 Msa0063530:CDS 45.0%
GTGGATGTTCCAGATCACAA+TGG + chr1_2:24112126-24112145 Msa0063530:CDS 45.0%
TCCAGATCACAATGGTAAGG+GGG + chr1_2:24112134-24112153 Msa0063530:CDS 45.0%
!! ACTGTTTCAGGTTGCTACAG+TGG + chr1_2:24112495-24112514 Msa0063530:intron 45.0%
GTCACCTACGTGATGTAAGA+AGG + chr1_2:24112581-24112600 Msa0063530:CDS 45.0%
CCAACCTTCTTACATCACGT+AGG - chr1_2:24112588-24112607 None:intergenic 45.0%
CCTACGTGATGTAAGAAGGT+TGG + chr1_2:24112585-24112604 Msa0063530:CDS 45.0%
ACGTGATGTAAGAAGGTTGG+TGG + chr1_2:24112588-24112607 Msa0063530:CDS 45.0%
ACTGTTCAAAAAGGGAACGG+CGG - chr1_2:24112654-24112673 None:intergenic 45.0%
AACGGAATGCTGAAGATCCT+GGG + chr1_2:24112761-24112780 Msa0063530:CDS 45.0%
ACGAGATGTACATGATGCCT+GGG - chr1_2:24112787-24112806 None:intergenic 45.0%
CATCATGTACATCTCGTCAG+TGG + chr1_2:24112790-24112809 Msa0063530:CDS 45.0%
AGGACATGGCATCATTAGCA+TGG + chr1_2:24112935-24112954 Msa0063530:intron 45.0%
TCCGGATTTCATTGCTGTGT+TGG + chr1_2:24113638-24113657 Msa0063530:intron 45.0%
GCCAACACAGCAATGAAATC+CGG - chr1_2:24113642-24113661 None:intergenic 45.0%
TATACCATCTGAAAGGAGCG+TGG + chr1_2:24113900-24113919 Msa0063530:CDS 45.0%
ACTATAGTTGACGGTAGTGC+TGG + chr1_2:24113931-24113950 Msa0063530:CDS 45.0%
!! GGTAGTGCTGGTGTTGAAAA+CGG + chr1_2:24113943-24113962 Msa0063530:CDS 45.0%
!! GTAGTGCTGGTGTTGAAAAC+GGG + chr1_2:24113944-24113963 Msa0063530:CDS 45.0%
!! AAAATATAATATTAAGAAAA+AGG - chr1_2:24110091-24110110 None:intergenic 5.0%
!! AAAACATAATTTATAAATAA+TGG - chr1_2:24112373-24112392 None:intergenic 5.0%
TACTGTAGGCCAAGCTTCTG+TGG - chr1_2:24108563-24108582 None:intergenic 50.0%
AGCTTGGCCTACAGTATGTG+CGG + chr1_2:24108567-24108586 Msa0063530:CDS 50.0%
GAGGATTGGAAGCCACCAAA+GGG + chr1_2:24108662-24108681 Msa0063530:CDS 50.0%
!! CAGATGCTCAGTGGACTAGT+GGG + chr1_2:24108918-24108937 Msa0063530:CDS 50.0%
ATTGCTTCCTTTGAGCGTCC+GGG - chr1_2:24109228-24109247 None:intergenic 50.0%
CATTGCTTCCTTTGAGCGTC+CGG - chr1_2:24109229-24109248 None:intergenic 50.0%
GTCTACTTCTGGTGCAGCAA+AGG + chr1_2:24109271-24109290 Msa0063530:CDS 50.0%
ACATATACTCCTCCTGACCC+TGG + chr1_2:24109344-24109363 Msa0063530:CDS 50.0%
TCTCTCTCTAACTGCACCTC+GGG - chr1_2:24109953-24109972 None:intergenic 50.0%
CCAACAACCATAGTTAGGCC+AGG - chr1_2:24110183-24110202 None:intergenic 50.0%
CCTGGCCTAACTATGGTTGT+TGG + chr1_2:24110180-24110199 Msa0063530:CDS 50.0%
GTGGCCCAACAACCATAGTT+AGG - chr1_2:24110188-24110207 None:intergenic 50.0%
TCAGTCTTTCCTGTACCAGG+TGG - chr1_2:24110207-24110226 None:intergenic 50.0%
!! AGTCGAAGAAGATAACGGGC+AGG - chr1_2:24111214-24111233 None:intergenic 50.0%
GCCCGTTATCTTCTTCGACT+TGG + chr1_2:24111214-24111233 Msa0063530:CDS 50.0%
TCTTCAGTTGCCAGAGGATG+TGG + chr1_2:24111351-24111370 Msa0063530:CDS 50.0%
CTTCAGTTGCCAGAGGATGT+GGG + chr1_2:24111352-24111371 Msa0063530:CDS 50.0%
CAAGTGTAACCCACATCCTC+TGG - chr1_2:24111364-24111383 None:intergenic 50.0%
GGTTACACTTGCGAAACTGC+AGG + chr1_2:24111373-24111392 Msa0063530:CDS 50.0%
! AAAGACATGCGGGCTGCTTT+GGG + chr1_2:24111553-24111572 Msa0063530:CDS 50.0%
!! CTTTCCTCTTTAGAGCGGCA+TGG - chr1_2:24111711-24111730 None:intergenic 50.0%
TCCAATGTTACTCCAGAGGC+AGG + chr1_2:24111810-24111829 Msa0063530:CDS 50.0%
!! TCCTGCCTCTGGAGTAACAT+TGG - chr1_2:24111814-24111833 None:intergenic 50.0%
AATGTTACTCCAGAGGCAGG+AGG + chr1_2:24111813-24111832 Msa0063530:CDS 50.0%
! GGTCCATGTGGCTGTACTTT+TGG - chr1_2:24111918-24111937 None:intergenic 50.0%
TCCCCCTTACCATTGTGATC+TGG - chr1_2:24112138-24112157 None:intergenic 50.0%
CATCGCGGATGAGAAGTTTC+TGG - chr1_2:24112287-24112306 None:intergenic 50.0%
CTTCATTGGTGCACCAAGCA+AGG + chr1_2:24112335-24112354 Msa0063530:CDS 50.0%
! CTTGTGCGCACTCGATTTGT+TGG + chr1_2:24112559-24112578 Msa0063530:CDS 50.0%
GAACGGAATGCTGAAGATCC+TGG + chr1_2:24112760-24112779 Msa0063530:CDS 50.0%
GACGAGATGTACATGATGCC+TGG - chr1_2:24112788-24112807 None:intergenic 50.0%
!! GAAATGCAGCCAGGAGTATC+TGG + chr1_2:24113113-24113132 Msa0063530:intron 50.0%
GAAGTGTGTGTGCGTGTTGT+CGG + chr1_2:24113181-24113200 Msa0063530:intron 50.0%
AAGTGTGTGTGCGTGTTGTC+GGG + chr1_2:24113182-24113201 Msa0063530:intron 50.0%
GCAAAATGGGCAGCAGAATG+CGG + chr1_2:24113819-24113838 Msa0063530:CDS 50.0%
GCTTGGCCTACAGTATGTGC+GGG + chr1_2:24108568-24108587 Msa0063530:CDS 55.0%
CTTGGCCTACAGTATGTGCG+GGG + chr1_2:24108569-24108588 Msa0063530:CDS 55.0%
TTGGCCTACAGTATGTGCGG+GGG + chr1_2:24108570-24108589 Msa0063530:CDS 55.0%
GGAGGATTGGAAGCCACCAA+AGG + chr1_2:24108661-24108680 Msa0063530:CDS 55.0%
GGATACAGCGCAGTACCACA+TGG + chr1_2:24108712-24108731 Msa0063530:CDS 55.0%
CTAGTCCACTGAGCATCTGC+AGG - chr1_2:24108917-24108936 None:intergenic 55.0%
!! GCAGATGCTCAGTGGACTAG+TGG + chr1_2:24108917-24108936 Msa0063530:CDS 55.0%
TTGCTTCCTTTGAGCGTCCG+GGG - chr1_2:24109227-24109246 None:intergenic 55.0%
CGGACGCTCAAAGGAAGCAA+TGG + chr1_2:24109227-24109246 Msa0063530:CDS 55.0%
GAAGCAATGGTGCCCTTCCT+GGG + chr1_2:24109240-24109259 Msa0063530:CDS 55.0%
TGAGGATATGGACCAGGGTC+AGG - chr1_2:24109359-24109378 None:intergenic 55.0%
AAGAGCTGAGTGCACCTGTG+TGG - chr1_2:24109417-24109436 None:intergenic 55.0%
ATCACCTTCTGTGCAACCCG+AGG + chr1_2:24109934-24109953 Msa0063530:intron 55.0%
ACTATGGTTGTTGGGCCACC+TGG + chr1_2:24110189-24110208 Msa0063530:CDS 55.0%
! GAAAGACATGCGGGCTGCTT+TGG + chr1_2:24111552-24111571 Msa0063530:CDS 55.0%
! AAGACATGCGGGCTGCTTTG+GGG + chr1_2:24111554-24111573 Msa0063530:CDS 55.0%
!! GTACCCATGCCGCTCTAAAG+AGG + chr1_2:24111704-24111723 Msa0063530:CDS 55.0%
TTACTCCAGAGGCAGGAGGA+TGG + chr1_2:24111817-24111836 Msa0063530:CDS 55.0%
AATGCCCAGACGGACAAACC+TGG - chr1_2:24111953-24111972 None:intergenic 55.0%
TGGTTGCCATGTCACGTGCT+CGG + chr1_2:24112608-24112627 Msa0063530:CDS 55.0%
AGTATCTGGCGTGTTCCCGT+TGG + chr1_2:24113127-24113146 Msa0063530:intron 55.0%
AGTGTGTGTGCGTGTTGTCG+GGG + chr1_2:24113183-24113202 Msa0063530:intron 55.0%
GGGAAACATCACAGGTGACG+TGG + chr1_2:24113395-24113414 Msa0063530:intron 55.0%
! ACCATCTGAAAGGAGCGTGG+AGG + chr1_2:24113903-24113922 Msa0063530:CDS 55.0%
TCCTCCACGCTCCTTTCAGA+TGG - chr1_2:24113907-24113926 None:intergenic 55.0%
! TCTGAAAGGAGCGTGGAGGA+TGG + chr1_2:24113907-24113926 Msa0063530:CDS 55.0%
GCCAGTGTGCCACAGAAGCT+TGG + chr1_2:24108551-24108570 Msa0063530:CDS 60.0%
GCCAAGCTTCTGTGGCACAC+TGG - chr1_2:24108555-24108574 None:intergenic 60.0%
CACACCCCCGCACATACTGT+AGG - chr1_2:24108577-24108596 None:intergenic 60.0%
GGGATCCTGCAGATGCTCAG+TGG + chr1_2:24108909-24108928 Msa0063530:CDS 60.0%
AAGCTTCCCCGGACGCTCAA+AGG + chr1_2:24109218-24109237 Msa0063530:CDS 60.0%
GGAAGCAATGGTGCCCTTCC+TGG + chr1_2:24109239-24109258 Msa0063530:CDS 60.0%
CAATGGTGCCCTTCCTGGGA+GGG + chr1_2:24109244-24109263 Msa0063530:CDS 60.0%
AGACACTGCCCTCCCAGGAA+GGG - chr1_2:24109255-24109274 None:intergenic 60.0%
TAGACACTGCCCTCCCAGGA+AGG - chr1_2:24109256-24109275 None:intergenic 60.0%
GAAGTAGACACTGCCCTCCC+AGG - chr1_2:24109260-24109279 None:intergenic 60.0%
GGGAGGGCAGTGTCTACTTC+TGG + chr1_2:24109260-24109279 Msa0063530:CDS 60.0%
GGATATGGACCAGGGTCAGG+AGG - chr1_2:24109356-24109375 None:intergenic 60.0%
! ACGGGGATAAGGGGGCACAA+CGG - chr1_2:24109492-24109511 None:intergenic 60.0%
! TGCACCTCGGGTTGCACAGA+AGG - chr1_2:24109941-24109960 None:intergenic 60.0%
GTTGTTGGGCCACCTGGTAC+AGG + chr1_2:24110195-24110214 Msa0063530:CDS 60.0%
TGCAGCGTTTAAGCCGTGCG+TGG - chr1_2:24111843-24111862 None:intergenic 60.0%
GGGAGACAACCCCATCTCCA+TGG + chr1_2:24112154-24112173 Msa0063530:CDS 60.0%
ACCAAGCCGAGCACGTGACA+TGG - chr1_2:24112617-24112636 None:intergenic 60.0%
ATGCTGAAGATCCTGGGCCC+AGG + chr1_2:24112767-24112786 Msa0063530:CDS 60.0%
TGTACATGATGCCTGGGCCC+AGG - chr1_2:24112781-24112800 None:intergenic 60.0%
GGGAACACGCCAGATACTCC+TGG - chr1_2:24113125-24113144 None:intergenic 60.0%
GCAATGGTGCCCTTCCTGGG+AGG + chr1_2:24109243-24109262 Msa0063530:CDS 65.0%
GCCATGTCACGTGCTCGGCT+TGG + chr1_2:24112613-24112632 Msa0063530:CDS 65.0%
CGTGGCCATCCTCCTGCCTC+TGG - chr1_2:24111825-24111844 None:intergenic 70.0%
GGCAGGAGGATGGCCACGCA+CGG + chr1_2:24111827-24111846 Msa0063530:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 24108446 24113981 24108446 ID=Msa0063530;Name=Msa0063530
chr1_2 mRNA 24108446 24113981 24108446 ID=Msa0063530-mRNA-1;Parent=Msa0063530;Name=Msa0063530-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0.4|0.16|1|1|0.83|6|0|919
chr1_2 exon 24108446 24109033 24108446 ID=Msa0063530-mRNA-1:exon:8653;Parent=Msa0063530-mRNA-1
chr1_2 exon 24109158 24109421 24109158 ID=Msa0063530-mRNA-1:exon:8654;Parent=Msa0063530-mRNA-1
chr1_2 exon 24110153 24110338 24110153 ID=Msa0063530-mRNA-1:exon:8655;Parent=Msa0063530-mRNA-1
chr1_2 exon 24111202 24112356 24111202 ID=Msa0063530-mRNA-1:exon:8656;Parent=Msa0063530-mRNA-1
chr1_2 exon 24112505 24112852 24112505 ID=Msa0063530-mRNA-1:exon:8657;Parent=Msa0063530-mRNA-1
chr1_2 exon 24113763 24113981 24113763 ID=Msa0063530-mRNA-1:exon:8658;Parent=Msa0063530-mRNA-1
chr1_2 CDS 24108446 24109033 24108446 ID=Msa0063530-mRNA-1:cds;Parent=Msa0063530-mRNA-1
chr1_2 CDS 24109158 24109421 24109158 ID=Msa0063530-mRNA-1:cds;Parent=Msa0063530-mRNA-1
chr1_2 CDS 24110153 24110338 24110153 ID=Msa0063530-mRNA-1:cds;Parent=Msa0063530-mRNA-1
chr1_2 CDS 24111202 24112356 24111202 ID=Msa0063530-mRNA-1:cds;Parent=Msa0063530-mRNA-1
chr1_2 CDS 24112505 24112852 24112505 ID=Msa0063530-mRNA-1:cds;Parent=Msa0063530-mRNA-1
chr1_2 CDS 24113763 24113981 24113763 ID=Msa0063530-mRNA-1:cds;Parent=Msa0063530-mRNA-1
Gene Sequence

>Msa0063530

TCCCATATTAGATCTGAATGGGATGCACTAAAAGAACACGATGTATTGTTTTTACTAACTATTCGCCCATCATTTGAGCCTCTTAGTGCAGAAGAAGAAAACAAAGCCAGTGTGCCACAGAAGCTTGGCCTACAGTATGTGCGGGGGTGTGAAATTATTGAGATTCATGATGAAGAAGGGACCCTTATGAATGATTTTTCTGGTAAAATTAAGCGGGAGGATTGGAAGCCACCAAAGGGAGAATTGAGAACAGTAACAGTGGCTTTGGATACAGCGCAGTACCACATGGATGTCAATAACATTGCTGAGAAAGGGGGAGAAGATGTTTATGGTACATTTAATGTGTTAATGAGGAGAAAGCCAAAAGAAAACAACTTTAAAGCAATCTTAGAATCAATAAGGGACTTAATGAATGAATACTGTATTGTTCCTAAATGGTTGGAGAATATTTTTCTTGGTTATGGGGATCCTGCAGATGCTCAGTGGACTAGTGGGTCTAATCTATTACCTGATCTATTAGAAACAGTAGATTTCAAAGATACCTTCTTAGATGCGGATCACTTGAAAGGAAGTTTTGGTGATTATGAGGTTACTTTTGTAAATCATGATGGCACTGAGAACTTGAACCCAAGCCCTCCTTTTAAAATCAAGCTTCCCCGGACGCTCAAAGGAAGCAATGGTGCCCTTCCTGGGAGGGCAGTGTCTACTTCTGGTGCAGCAAAGGATGTCAATATGGTTGATAGTAATCATCAGAAAGAAACACTTGTAATTGAGACATATACTCCTCCTGACCCTGGTCCATATCCTCAAGATCAGCCAAAACAGAATTCAGTTAGATTTACAGCCACACAGGTTGAAGCAATAATATCAGGTATTCAGCCTGGCCTAACTATGGTTGTTGGGCCACCTGGTACAGGAAAGACTGATACAGCTGTACAAATTCTAAATGTTCTTTATCATAACTGTCCTTCTCAGAGAACCTTAATAATTACTCATTCAAATCAAGCTTTGAACGACCTATTTGAGAAGATAATGCAGAGAGATGTACCTGCCCGTTATCTTCTTCGACTTGGTCAGGGAGAACAAGAGCTTGCTACTGATCTTGATTTTAGTCGGCAAGGTCGCGTCAATGCTATGCTTGTTAGACGGTTAGAACTGCTAAGTGAAGTGGAGAGGCTAGCTAGATCTCTTCAGTTGCCAGAGGATGTGGGTTACACTTGCGAAACTGCAGGATATTTCTGGTTGCTTCATGTTTATTCACGCTGGGAGCAATTTCTTGCTGCTTGTGCCGAGAATAAAGAAAAGCCAACATTTGTTCGAGATCGTTTTCCTTTCAAAGAGTTCTTCTGTGACACACCACATCCTGTATTTACCGGTGAGTCTTTTGAGAAAGACATGCGGGCTGCTTTGGGGTGCTTTCGTCATCTGAAGACTATGTTTCAAGAACTTGAAGAGTGCCGGGCTTTTGAATTACTGAAGTCAACAGCAGACAGAGCTAACTACTTAATGACTAAGCAGGCTAAGATTGTGGCAATGACTTGTACCCATGCCGCTCTAAAGAGGAAAGATTTCCTTCAGCTAGGTTTTAAGTATGACAACTTGTTGATGGAAGAAAGTGCCCAAATTTTAGAAATTGAGACTTTCATTCCAATGTTACTCCAGAGGCAGGAGGATGGCCACGCACGGCTTAAACGCTGCATTCTAATTGGTGATCATCACCAACTGCCTCCTGTTGTGAAAAATATGGCTTTCCAAAAGTACAGCCACATGGACCAGAGTTTATTTACCAGGTTTGTCCGTCTGGGCATTCCTTACATTGAACTAAATGCTCAAGGAAGAGCGAGGCCAAGCATAGCCAAACTTTACAACTGGAGATACAGAGACTTGGGAGACCTTCCTTATCTAAAGGAGGAAGCAATATTCAATAGGGCAAATGCTGGATTTGCTTATGATTATCAGTTAGTGGATGTTCCAGATCACAATGGTAAGGGGGAGACAACCCCATCTCCATGGTTTTACCAAAATGAAGGAGAAGCAGAATATATTGTCAGCGTTTATATATACATGCGTTTATTGGGGTATCCTGCCAATAAGATATCAATTTTGACCACTTACAATGGCCAGAAACTTCTCATCCGCGATGTTATAAACAGGAGATGTGTTCCATATAACTTCATTGGTGCACCAAGCAAGGTTGCTACAGTGGATAAGTTTCAAGGTCAGCAAAATGATTTTATACTGCTGTCTCTTGTGCGCACTCGATTTGTTGGTCACCTACGTGATGTAAGAAGGTTGGTGGTTGCCATGTCACGTGCTCGGCTTGGTTTATATGTCTTTTGCCGCCGTTCCCTTTTTGAACAGTGCTATGAGCTGCAGCCTACATTTCAGCTTCTTCTCAAGAGACCAGACCATCTTGCCCTTAATATGAATGAGATTACATCATATACTGAACGGAATGCTGAAGATCCTGGGCCCAGGCATCATGTACATCTCGTCAGTGGCATTGAAGAGATGAGTAGTATCATAGACAGGTTATATCAGGAAAAAATGAGATATCAATTTGAGCAAAATGGATCTTTAGTAAGTACAGATTTGGTGCAAAATGGGCAGCAGAATGCGGATGATAAGCAACATGAAAGCGGTGAAGCTATAACTGTTGATAACCATGTTGCTAGAGATATACCATCTGAAAGGAGCGTGGAGGATGGTACTATAGTTGACGGTAGTGCTGGTGTTGAAAACGGGAGCACAGCACCATAG
Protein sequence

>Msa0063530

SHIRSEWDALKEHDVLFLLTIRPSFEPLSAEEENKASVPQKLGLQYVRGCEIIEIHDEEGTLMNDFSGKIKREDWKPPKGELRTVTVALDTAQYHMDVNNIAEKGGEDVYGTFNVLMRRKPKENNFKAILESIRDLMNEYCIVPKWLENIFLGYGDPADAQWTSGSNLLPDLLETVDFKDTFLDADHLKGSFGDYEVTFVNHDGTENLNPSPPFKIKLPRTLKGSNGALPGRAVSTSGAAKDVNMVDSNHQKETLVIETYTPPDPGPYPQDQPKQNSVRFTATQVEAIISGIQPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQRDVPARYLLRLGQGEQELATDLDFSRQGRVNAMLVRRLELLSEVERLARSLQLPEDVGYTCETAGYFWLLHVYSRWEQFLAACAENKEKPTFVRDRFPFKEFFCDTPHPVFTGESFEKDMRAALGCFRHLKTMFQELEECRAFELLKSTADRANYLMTKQAKIVAMTCTHAALKRKDFLQLGFKYDNLLMEESAQILEIETFIPMLLQRQEDGHARLKRCILIGDHHQLPPVVKNMAFQKYSHMDQSLFTRFVRLGIPYIELNAQGRARPSIAKLYNWRYRDLGDLPYLKEEAIFNRANAGFAYDYQLVDVPDHNGKGETTPSPWFYQNEGEAEYIVSVYIYMRLLGYPANKISILTTYNGQKLLIRDVINRRCVPYNFIGAPSKVATVDKFQGQQNDFILLSLVRTRFVGHLRDVRRLVVAMSRARLGLYVFCRRSLFEQCYELQPTFQLLLKRPDHLALNMNEITSYTERNAEDPGPRHHVHLVSGIEEMSSIIDRLYQEKMRYQFEQNGSLVSTDLVQNGQQNADDKQHESGEAITVDNHVARDIPSERSVEDGTIVDGSAGVENGSTAP*