Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0629930 | XP_024636786.2 | 75.546 | 229 | 43 | 4 | 1 | 216 | 1 | 229 | 2.05e-95 | 310 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0629930 | sp|Q9SKK2|RLP21_ARATH | 39.810 | 211 | 113 | 8 | 10 | 207 | 15 | 224 | 2.94e-31 | 124 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0088550 | Msa0629930 | 0.813058 | 3.101376e-51 | -8.615850e-47 |
| Msa0629850 | Msa0629930 | 0.828369 | 9.343744e-55 | -8.615850e-47 |
| Msa0629880 | Msa0629930 | 0.843038 | 1.791623e-58 | -8.615850e-47 |
| Msa0629890 | Msa0629930 | 0.815577 | 8.606781e-52 | -8.615850e-47 |
| Msa0629930 | Msa0629940 | 0.856659 | 2.769544e-62 | -8.615850e-47 |
| Msa0629930 | Msa0641020 | 0.821955 | 3.066755e-53 | -8.615850e-47 |
| Msa0629930 | Msa0733400 | 0.806205 | 9.209816e-50 | -8.615850e-47 |
| Msa0629930 | Msa0752580 | 0.824003 | 1.021340e-53 | -8.615850e-47 |
| Msa0629930 | Msa0754180 | 0.812529 | 4.049947e-51 | -8.615850e-47 |
| Msa0629930 | Msa0754500 | 0.828382 | 9.274116e-55 | -8.615850e-47 |
| Msa0629930 | Msa0782080 | 0.807854 | 4.125210e-50 | -8.615850e-47 |
| Msa0629930 | Msa0784580 | 0.822892 | 1.857071e-53 | -8.615850e-47 |
| Msa0629930 | Msa0818000 | 0.813723 | 2.214961e-51 | -8.615850e-47 |
| Msa0629930 | Msa0818010 | 0.841433 | 4.765413e-58 | -8.615850e-47 |
| Msa0629930 | Msa0818030 | 0.850398 | 1.742041e-60 | -8.615850e-47 |
| Msa0629930 | Msa0830900 | 0.819460 | 1.147874e-52 | -8.615850e-47 |
| Msa0629930 | Msa0858360 | 0.817411 | 3.343699e-52 | -8.615850e-47 |
| Msa0629930 | Msa0867810 | 0.803804 | 2.926237e-49 | -8.615850e-47 |
| Msa0629930 | Msa0883390 | 0.801847 | 7.423361e-49 | -8.615850e-47 |
| Msa0629930 | Msa0883450 | 0.807154 | 5.804937e-50 | -8.615850e-47 |
| Msa0629930 | Msa0883660 | 0.800532 | 1.379110e-48 | -8.615850e-47 |
| Msa0629930 | Msa0884920 | 0.805270 | 1.447845e-49 | -8.615850e-47 |
| Msa0629930 | Msa0912500 | 0.801382 | 9.242905e-49 | -8.615850e-47 |
| Msa0629930 | Msa0986820 | 0.801157 | 1.027908e-48 | -8.615850e-47 |
| Msa0629930 | Msa1006250 | 0.822943 | 1.807662e-53 | -8.615850e-47 |
| Msa0629930 | Msa1006400 | 0.823616 | 1.258550e-53 | -8.615850e-47 |
| Msa0629930 | Msa1006440 | 0.806771 | 6.997826e-50 | -8.615850e-47 |
| Msa0629930 | Msa1006460 | 0.818215 | 2.201909e-52 | -8.615850e-47 |
| Msa0629930 | Msa1006600 | 0.809679 | 1.679525e-50 | -8.615850e-47 |
| Msa0629930 | Msa1006680 | 0.826088 | 3.286113e-54 | -8.615850e-47 |
| Msa0629930 | Msa1008340 | 0.830558 | 2.744707e-55 | -8.615850e-47 |
| Msa0629930 | Msa1048490 | 0.831377 | 1.727789e-55 | -8.615850e-47 |
| Msa0629930 | Msa1048590 | 0.829370 | 5.346982e-55 | -8.615850e-47 |
| Msa0629930 | Msa1048610 | 0.843824 | 1.104641e-58 | -8.615850e-47 |
| Msa0629930 | Msa1050480 | 0.832745 | 7.934210e-56 | -8.615850e-47 |
| Msa0629930 | Msa1050490 | 0.818416 | 1.982859e-52 | -8.615850e-47 |
| Msa0629930 | Msa1050500 | 0.830256 | 3.252713e-55 | -8.615850e-47 |
| Msa0629930 | Msa1100180 | 0.806008 | 1.013191e-49 | -8.615850e-47 |
| Msa0629930 | Msa1135660 | 0.840823 | 6.892696e-58 | -8.615850e-47 |
| Msa0629930 | Msa1139240 | 0.810305 | 1.231310e-50 | -8.615850e-47 |
| Msa0629930 | Msa1182780 | 0.808801 | 2.591044e-50 | -8.615850e-47 |
| Msa0629930 | Msa1198090 | 0.805688 | 1.183261e-49 | -8.615850e-47 |
| Msa0629930 | Msa1279850 | 0.820868 | 5.462712e-53 | -8.615850e-47 |
| Msa0629930 | Msa1279860 | 0.839903 | 1.198990e-57 | -8.615850e-47 |
| Msa0629930 | Msa1279870 | 0.815801 | 7.676034e-52 | -8.615850e-47 |
| Msa0629930 | Msa1285820 | 0.802924 | 4.453478e-49 | -8.615850e-47 |
| Msa0629930 | Msa1285830 | 0.840144 | 1.037452e-57 | -8.615850e-47 |
| Msa0629930 | Msa1287560 | 0.827749 | 1.317162e-54 | -8.615850e-47 |
| Msa0629930 | Msa1287700 | 0.822592 | 2.181243e-53 | -8.615850e-47 |
| Msa0629930 | Msa1288000 | 0.817532 | 3.140556e-52 | -8.615850e-47 |
| Msa0629930 | Msa1289540 | 0.832962 | 7.008114e-56 | -8.615850e-47 |
| Msa0629930 | Msa1343770 | 0.811625 | 6.375857e-51 | -8.615850e-47 |
| Msa0629930 | Msa1351080 | 0.817623 | 2.995699e-52 | -8.615850e-47 |
| Msa0629930 | Msa1359820 | 0.823144 | 1.622533e-53 | -8.615850e-47 |
| Msa0629930 | Msa1423970 | 0.807710 | 4.426343e-50 | -8.615850e-47 |
| Msa0629930 | Msa1444370 | 0.804645 | 1.955343e-49 | -8.615850e-47 |
| Msa0629930 | Msa1445250 | 0.814802 | 1.279956e-51 | -8.615850e-47 |
| Msa0629930 | Msa1459170 | 0.812170 | 4.851170e-51 | -8.615850e-47 |
| Msa0135360 | Msa0629930 | 0.812107 | 5.007074e-51 | -8.615850e-47 |
| Msa0142230 | Msa0629930 | 0.811937 | 5.452874e-51 | -8.615850e-47 |
| Msa0151870 | Msa0629930 | 0.808774 | 2.625351e-50 | -8.615850e-47 |
| Msa0153440 | Msa0629930 | 0.802767 | 4.799466e-49 | -8.615850e-47 |
| Msa0179860 | Msa0629930 | 0.804943 | 1.694728e-49 | -8.615850e-47 |
| Msa0203070 | Msa0629930 | 0.815796 | 7.692830e-52 | -8.615850e-47 |
| Msa0212210 | Msa0629930 | 0.801490 | 8.784808e-49 | -8.615850e-47 |
| Msa0232860 | Msa0629930 | 0.803555 | 3.296414e-49 | -8.615850e-47 |
| Msa0389030 | Msa0629930 | 0.807179 | 5.736169e-50 | -8.615850e-47 |
| Msa0389050 | Msa0629930 | 0.814146 | 1.787041e-51 | -8.615850e-47 |
| Msa0452410 | Msa0629930 | 0.803570 | 3.272381e-49 | -8.615850e-47 |
| Msa0254190 | Msa0629930 | 0.806174 | 9.351096e-50 | -8.615850e-47 |
| Msa0273570 | Msa0629930 | 0.819646 | 1.041121e-52 | -8.615850e-47 |
| Msa0284810 | Msa0629930 | 0.816154 | 6.402298e-52 | -8.615850e-47 |
| Msa0314160 | Msa0629930 | 0.814333 | 1.625087e-51 | -8.615850e-47 |
| Msa0323550 | Msa0629930 | 0.810182 | 1.309274e-50 | -8.615850e-47 |
| Msa0331430 | Msa0629930 | 0.822915 | 1.834749e-53 | -8.615850e-47 |
| Msa0533290 | Msa0629930 | 0.840924 | 6.485181e-58 | -8.615850e-47 |
| Msa0533430 | Msa0629930 | 0.839054 | 1.992711e-57 | -8.615850e-47 |
| Msa0533460 | Msa0629930 | 0.801395 | 9.188895e-49 | -8.615850e-47 |
| Msa0563140 | Msa0629930 | 0.813196 | 2.892484e-51 | -8.615850e-47 |
| Msa0580610 | Msa0629930 | 0.800765 | 1.236346e-48 | -8.615850e-47 |
| Msa0589610 | Msa0629930 | 0.800617 | 1.325384e-48 | -8.615850e-47 |
| Msa0589660 | Msa0629930 | 0.814385 | 1.582727e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0629930 | MtrunA17_Chr4g0006861 | 75.546 | 229 | 43 | 4 | 1 | 216 | 1 | 229 | 1.88e-99 | 310 |
| Msa0629930 | MtrunA17_Chr4g0006421 | 75.664 | 226 | 45 | 5 | 1 | 216 | 1 | 226 | 1.20e-97 | 305 |
| Msa0629930 | MtrunA17_Chr4g0006941 | 67.907 | 215 | 60 | 4 | 1 | 207 | 13 | 226 | 3.00e-79 | 255 |
| Msa0629930 | MtrunA17_Chr4g0006951 | 67.232 | 177 | 49 | 4 | 1 | 168 | 1 | 177 | 1.19e-71 | 218 |
| Msa0629930 | MtrunA17_Chr4g0006911 | 78.906 | 128 | 18 | 4 | 1 | 119 | 1 | 128 | 1.05e-59 | 184 |
| Msa0629930 | MtrunA17_Chr4g0006881 | 64.935 | 154 | 33 | 5 | 1 | 133 | 1 | 154 | 1.11e-55 | 175 |
| Msa0629930 | MtrunA17_Chr8g0372861 | 40.244 | 164 | 90 | 3 | 24 | 180 | 27 | 189 | 1.17e-27 | 110 |
| Msa0629930 | MtrunA17_Chr2g0283921 | 39.024 | 164 | 91 | 4 | 24 | 180 | 29 | 190 | 1.02e-23 | 99.0 |
| Msa0629930 | MtrunA17_Chr5g0439491 | 31.839 | 223 | 129 | 7 | 1 | 207 | 11 | 226 | 2.78e-15 | 74.3 |
| Msa0629930 | MtrunA17_Chr4g0004161 | 33.166 | 199 | 123 | 6 | 13 | 207 | 9 | 201 | 1.21e-14 | 72.4 |
| Msa0629930 | MtrunA17_Chr3g0106171 | 32.870 | 216 | 130 | 8 | 4 | 215 | 13 | 217 | 2.53e-13 | 68.6 |
| Msa0629930 | MtrunA17_Chr5g0439451 | 31.250 | 224 | 127 | 10 | 1 | 207 | 11 | 224 | 7.93e-13 | 67.4 |
| Msa0629930 | MtrunA17_Chr6g0465181 | 28.634 | 227 | 143 | 6 | 1 | 216 | 15 | 233 | 3.22e-12 | 65.5 |
| Msa0629930 | MtrunA17_Chr5g0429421 | 30.412 | 194 | 117 | 6 | 25 | 209 | 33 | 217 | 9.47e-12 | 63.9 |
| Msa0629930 | MtrunA17_Chr7g0216791 | 33.333 | 195 | 104 | 8 | 25 | 205 | 13 | 195 | 1.09e-11 | 63.2 |
| Msa0629930 | MtrunA17_Chr6g0465131 | 31.959 | 194 | 112 | 7 | 25 | 206 | 39 | 224 | 1.43e-11 | 63.5 |
| Msa0629930 | MtrunA17_Chr8g0357171 | 40.541 | 111 | 64 | 2 | 100 | 210 | 138 | 246 | 2.20e-11 | 62.8 |
| Msa0629930 | MtrunA17_Chr4g0012841 | 31.551 | 187 | 101 | 5 | 46 | 207 | 43 | 227 | 2.95e-11 | 62.4 |
| Msa0629930 | MtrunA17_Chr6g0465291 | 29.630 | 216 | 135 | 6 | 4 | 210 | 38 | 245 | 3.09e-11 | 62.4 |
| Msa0629930 | MtrunA17_Chr1g0151041 | 38.462 | 117 | 70 | 2 | 93 | 209 | 368 | 482 | 3.36e-11 | 62.4 |
| Msa0629930 | MtrunA17_Chr6g0455811 | 32.275 | 189 | 112 | 8 | 23 | 204 | 29 | 208 | 3.74e-11 | 62.4 |
| Msa0629930 | MtrunA17_Chr2g0284871 | 29.208 | 202 | 109 | 8 | 25 | 204 | 40 | 229 | 4.27e-11 | 62.0 |
| Msa0629930 | MtrunA17_Chr5g0420311 | 30.208 | 192 | 121 | 5 | 25 | 209 | 38 | 223 | 5.14e-11 | 60.8 |
| Msa0629930 | MtrunA17_Chr7g0216801 | 30.622 | 209 | 127 | 7 | 25 | 218 | 53 | 258 | 7.23e-11 | 61.2 |
| Msa0629930 | MtrunA17_Chr8g0363231 | 30.688 | 189 | 107 | 8 | 40 | 224 | 50 | 218 | 9.91e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0629930 | AT2G25470.3 | 39.810 | 211 | 113 | 8 | 10 | 207 | 15 | 224 | 2.99e-32 | 124 |
| Msa0629930 | AT2G25470.2 | 39.810 | 211 | 113 | 8 | 10 | 207 | 15 | 224 | 3.71e-32 | 123 |
| Msa0629930 | AT2G25470.1 | 40.097 | 207 | 110 | 8 | 14 | 207 | 1 | 206 | 2.17e-31 | 121 |
| Msa0629930 | AT1G58190.1 | 38.119 | 202 | 112 | 5 | 14 | 209 | 17 | 211 | 4.79e-29 | 114 |
| Msa0629930 | AT1G74190.1 | 38.222 | 225 | 128 | 8 | 4 | 218 | 5 | 228 | 5.52e-29 | 114 |
| Msa0629930 | AT1G58190.2 | 38.119 | 202 | 112 | 5 | 14 | 209 | 17 | 211 | 6.76e-29 | 114 |
| Msa0629930 | AT1G58190.2 | 37.719 | 114 | 67 | 2 | 99 | 209 | 199 | 311 | 1.35e-11 | 63.9 |
| Msa0629930 | AT5G49290.3 | 36.325 | 234 | 113 | 8 | 10 | 207 | 11 | 244 | 5.48e-28 | 111 |
| Msa0629930 | AT5G49290.2 | 36.325 | 234 | 113 | 8 | 10 | 207 | 11 | 244 | 5.71e-28 | 111 |
| Msa0629930 | AT5G49290.4 | 36.522 | 230 | 110 | 8 | 14 | 207 | 1 | 230 | 1.19e-27 | 110 |
| Msa0629930 | AT5G49290.6 | 36.522 | 230 | 110 | 8 | 14 | 207 | 1 | 230 | 1.19e-27 | 110 |
| Msa0629930 | AT5G49290.8 | 36.522 | 230 | 110 | 8 | 14 | 207 | 1 | 230 | 1.19e-27 | 110 |
| Msa0629930 | AT1G54470.1 | 36.098 | 205 | 115 | 8 | 10 | 203 | 110 | 309 | 1.36e-27 | 109 |
| Msa0629930 | AT1G74180.1 | 42.180 | 211 | 107 | 7 | 11 | 207 | 11 | 220 | 5.07e-27 | 108 |
| Msa0629930 | AT1G74180.2 | 41.262 | 206 | 108 | 6 | 14 | 207 | 2 | 206 | 8.41e-27 | 108 |
| Msa0629930 | AT1G74170.2 | 34.836 | 244 | 114 | 8 | 10 | 209 | 11 | 253 | 1.60e-26 | 107 |
| Msa0629930 | AT5G49290.1 | 36.019 | 211 | 100 | 7 | 14 | 189 | 1 | 211 | 3.40e-26 | 106 |
| Msa0629930 | AT1G58190.3 | 37.056 | 197 | 111 | 5 | 20 | 209 | 32 | 222 | 3.96e-26 | 106 |
| Msa0629930 | AT3G53240.2 | 38.693 | 199 | 109 | 6 | 21 | 207 | 2 | 199 | 7.15e-24 | 99.8 |
| Msa0629930 | AT5G49290.5 | 36.788 | 193 | 89 | 6 | 48 | 207 | 10 | 202 | 3.20e-21 | 92.0 |
| Msa0629930 | AT5G49290.7 | 36.207 | 174 | 79 | 5 | 48 | 189 | 10 | 183 | 9.77e-20 | 87.8 |
| Msa0629930 | AT1G07390.4 | 32.296 | 257 | 124 | 10 | 1 | 213 | 17 | 267 | 8.74e-19 | 85.1 |
| Msa0629930 | AT1G07390.5 | 31.496 | 254 | 125 | 9 | 3 | 213 | 20 | 267 | 8.95e-19 | 85.1 |
| Msa0629930 | AT4G04220.1 | 34.896 | 192 | 113 | 5 | 25 | 207 | 24 | 212 | 6.10e-18 | 82.4 |
| Msa0629930 | AT3G53240.1 | 38.509 | 161 | 86 | 6 | 59 | 207 | 4 | 163 | 4.51e-16 | 77.0 |
| Msa0629930 | AT3G53240.3 | 38.509 | 161 | 86 | 6 | 59 | 207 | 4 | 163 | 4.51e-16 | 77.0 |
| Msa0629930 | AT1G07390.3 | 31.658 | 199 | 99 | 6 | 51 | 213 | 27 | 224 | 1.26e-13 | 70.1 |
| Msa0629930 | AT1G07390.1 | 31.658 | 199 | 99 | 6 | 51 | 213 | 27 | 224 | 1.35e-13 | 69.7 |
| Msa0629930 | AT1G74170.1 | 34.783 | 184 | 77 | 6 | 68 | 209 | 3 | 185 | 1.52e-13 | 69.7 |
| Msa0629930 | AT5G40170.1 | 34.911 | 169 | 99 | 4 | 46 | 211 | 64 | 224 | 8.01e-13 | 67.4 |
| Msa0629930 | AT5G27060.2 | 28.287 | 251 | 137 | 7 | 1 | 215 | 14 | 257 | 2.45e-11 | 63.2 |
| Msa0629930 | AT5G27060.3 | 28.287 | 251 | 137 | 7 | 1 | 215 | 13 | 256 | 2.50e-11 | 63.2 |
| Msa0629930 | AT5G27060.1 | 28.287 | 251 | 137 | 7 | 1 | 215 | 13 | 256 | 2.50e-11 | 63.2 |
| Msa0629930 | AT3G11080.2 | 29.437 | 231 | 115 | 8 | 1 | 215 | 14 | 212 | 4.95e-11 | 62.4 |
| Msa0629930 | AT3G11080.1 | 29.437 | 231 | 115 | 8 | 1 | 215 | 14 | 212 | 4.95e-11 | 62.4 |
| Msa0629930 | AT3G28040.1 | 30.667 | 225 | 137 | 8 | 6 | 223 | 8 | 220 | 7.49e-11 | 61.6 |
| Msa0629930 | AT4G13880.1 | 32.381 | 210 | 110 | 10 | 25 | 224 | 34 | 221 | 8.61e-11 | 61.6 |
Find 38 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTGCATCTTGTCTAATAA+TGG | 0.227115 | 4_3:+11329457 | Msa0629930:CDS |
| AATGAAACATTTAACATATT+AGG | 0.260150 | 4_3:-11329604 | None:intergenic |
| GAGATATCAATTGTTGTGTT+TGG | 0.287692 | 4_3:+11329518 | Msa0629930:CDS |
| ACTGCATCTTGTCTAATAAT+GGG | 0.337779 | 4_3:+11329458 | Msa0629930:CDS |
| AATAGAGTGAAGTGCTATTC+TGG | 0.338684 | 4_3:+11329541 | Msa0629930:CDS |
| TGGGGATAGTGACAATGAAT+TGG | 0.344684 | 4_3:+11329477 | Msa0629930:CDS |
| GTCTCCAACTTTCTAAGTCT+TGG | 0.346374 | 4_3:-11330319 | None:intergenic |
| TATTTAGACGGTTCTCAAAA+AGG | 0.355435 | 4_3:-11330348 | None:intergenic |
| GTCAAGTTTGAATGGATTAA+CGG | 0.374640 | 4_3:+11330381 | Msa0629930:CDS |
| CCAACCTTGAAAATTGTTGT+AGG | 0.377264 | 4_3:-11329665 | None:intergenic |
| TGCTCTAACAACTTTGAAGT+TGG | 0.389478 | 4_3:+11333134 | Msa0629930:CDS |
| AGCATCTTGTCAAGTTTGAA+TGG | 0.401026 | 4_3:+11330373 | Msa0629930:CDS |
| GTTTCCTAGACTTAAAAGAT+TGG | 0.424986 | 4_3:+11333047 | Msa0629930:CDS |
| GTGACAATGAATTGGGTTCA+TGG | 0.440647 | 4_3:+11329485 | Msa0629930:CDS |
| GCTCTAACAACTTTGAAGTT+GGG | 0.442913 | 4_3:+11333135 | Msa0629930:CDS |
| GAAGGAGAGAATAGGTCTGC+TGG | 0.453409 | 4_3:+11329426 | Msa0629930:CDS |
| TAGGATCATATAGTAACTCT+TGG | 0.459200 | 4_3:-11329585 | None:intergenic |
| GGGGATAGTGACAATGAATT+GGG | 0.478454 | 4_3:+11329478 | Msa0629930:CDS |
| GTGATGTTAATGGGAAATCA+AGG | 0.493471 | 4_3:+11329385 | Msa0629930:CDS |
| GAAGTTGGGTTCTAATTCGA+TGG | 0.499509 | 4_3:+11333149 | Msa0629930:CDS |
| AGGAGGCGTAGCTCTTCAAA+TGG | 0.520991 | 4_3:-11329634 | None:intergenic |
| GCAGTCAATCCATTTAAACT+TGG | 0.528828 | 4_3:-11333114 | None:intergenic |
| ACAAGATGCTACTATTTAGA+CGG | 0.538321 | 4_3:-11330360 | None:intergenic |
| ATCATATAGTAACTCTTGGA+TGG | 0.540977 | 4_3:-11329581 | None:intergenic |
| ATGGAAAACTTCTCCGCTCA+AGG | 0.552537 | 4_3:+11333168 | Msa0629930:CDS |
| GATAATAGCTTCTCCGCTGA+AGG | 0.558770 | 4_3:+11330439 | Msa0629930:CDS |
| TGACAATGAATTGGGTTCAT+GGG | 0.563192 | 4_3:+11329486 | Msa0629930:CDS |
| TGCTTAGAGAAGGAGAGAAT+AGG | 0.584870 | 4_3:+11329418 | Msa0629930:CDS |
| ATGTAACGGTTGCTTAGAGA+AGG | 0.588445 | 4_3:+11329408 | Msa0629930:CDS |
| GGCGTAGCTCTTCAAATGGA+CGG | 0.592271 | 4_3:-11329630 | None:intergenic |
| ATGGGAAATCAAGGATGTAA+CGG | 0.594838 | 4_3:+11329394 | Msa0629930:CDS |
| TATCTATGTTGTTATAACCG+AGG | 0.596036 | 4_3:-11330420 | None:intergenic |
| CAAACAAATTGTACCTTCAG+CGG | 0.613698 | 4_3:-11330452 | None:intergenic |
| GCTCTAACAACTTTGAACCT+CGG | 0.615584 | 4_3:+11330403 | Msa0629930:CDS |
| CAAGGTTGGATTGGCAACGA+AGG | 0.630954 | 4_3:+11329679 | Msa0629930:CDS |
| CTGCATCTTGTCTAATAATG+GGG | 0.632745 | 4_3:+11329459 | Msa0629930:CDS |
| AATTGTTGTAGGACAAGTCG+AGG | 0.635696 | 4_3:-11329654 | None:intergenic |
| TGTTGTAGGACAAGTCGAGG+AGG | 0.728783 | 4_3:-11329651 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTAATTATGTTTGTAT+TGG | - | chr4_3:11330064-11330083 | None:intergenic | 10.0% |
| !!! | TTATTTACTTTCTTTTTTTA+AGG | - | chr4_3:11332203-11332222 | None:intergenic | 10.0% |
| !! | AAAAAAGAAAGTAAATAATA+CGG | + | chr4_3:11332205-11332224 | Msa0629930:intron | 10.0% |
| !! | TAATAAATTACTTGAAAAAA+AGG | + | chr4_3:11332535-11332554 | Msa0629930:intron | 10.0% |
| !! | CTCAAATATTAATATTATTT+AGG | + | chr4_3:11332709-11332728 | Msa0629930:intron | 10.0% |
| !!! | TTCATAAATTCTTTAATTTT+AGG | + | chr4_3:11332891-11332910 | Msa0629930:intron | 10.0% |
| !!! | TTTATATTTTGTGATGTTAA+TGG | + | chr4_3:11329375-11329394 | Msa0629930:CDS | 15.0% |
| !!! | TTATATTTTGTGATGTTAAT+GGG | + | chr4_3:11329376-11329395 | Msa0629930:CDS | 15.0% |
| !! | AATGAAACATTTAACATATT+AGG | - | chr4_3:11329607-11329626 | None:intergenic | 15.0% |
| !! | ATTCATTCAAACAAATAAAT+TGG | + | chr4_3:11330867-11330886 | Msa0629930:intron | 15.0% |
| !! | TATAAAGCTATTAATTTCAT+AGG | - | chr4_3:11331108-11331127 | None:intergenic | 15.0% |
| !! | GACAATATAAAAATAGATAT+CGG | + | chr4_3:11331742-11331761 | Msa0629930:intron | 15.0% |
| !! | GACAATATAAAAATAGATAT+CGG | + | chr4_3:11331742-11331761 | Msa0629930:intron | 15.0% |
| !!! | AATAAGTGTTGTAAATAATA+CGG | + | chr4_3:11332171-11332190 | Msa0629930:intron | 15.0% |
| !! | AAAAGAAAAAGAAAAAAAGT+GGG | - | chr4_3:11332361-11332380 | None:intergenic | 15.0% |
| !! | AAAAAGAAAAAGAAAAAAAG+TGG | - | chr4_3:11332362-11332381 | None:intergenic | 15.0% |
| !! | GAAAAAAAGGAAAAATAAAT+TGG | + | chr4_3:11332548-11332567 | Msa0629930:intron | 15.0% |
| !! | AAAAAAAACTTCATAAATGT+GGG | - | chr4_3:11332647-11332666 | None:intergenic | 15.0% |
| !! | TAAAAAAAACTTCATAAATG+TGG | - | chr4_3:11332648-11332667 | None:intergenic | 15.0% |
| !!! | TTTATGAAGTTTTTTTTAAG+AGG | + | chr4_3:11332650-11332669 | Msa0629930:intron | 15.0% |
| !! | TTTAGAAAACTTAAACTCAA+CGG | - | chr4_3:11329834-11329853 | None:intergenic | 20.0% |
| !!! | GAGTTTAAGTTTTCTAAAAA+AGG | + | chr4_3:11329836-11329855 | Msa0629930:intron | 20.0% |
| !!! | AAGGTTATTATTTTACAACA+TGG | + | chr4_3:11329855-11329874 | Msa0629930:intron | 20.0% |
| !! | TATATGAATTCTTTGTTAGA+TGG | + | chr4_3:11329962-11329981 | Msa0629930:intron | 20.0% |
| !! | ATATGAATTCTTTGTTAGAT+GGG | + | chr4_3:11329963-11329982 | Msa0629930:intron | 20.0% |
| !!! | AAGAGAGATATTTTTCTTAT+AGG | + | chr4_3:11330094-11330113 | Msa0629930:intron | 20.0% |
| !!! | TACAATCTTTAATTTGTGTT+TGG | - | chr4_3:11330836-11330855 | None:intergenic | 20.0% |
| !! | TAAATTGGAAAATGAATTGA+AGG | + | chr4_3:11330882-11330901 | Msa0629930:intron | 20.0% |
| !! | AGAAAAATGAAGGAAATAAA+AGG | + | chr4_3:11330954-11330973 | Msa0629930:intron | 20.0% |
| !! | GAAAAATGAAGGAAATAAAA+GGG | + | chr4_3:11330955-11330974 | Msa0629930:intron | 20.0% |
| !! | AAAAGAACTATGATAATTGA+AGG | + | chr4_3:11330992-11331011 | Msa0629930:intron | 20.0% |
| !! | ATGATAATTGAAGGAATAAA+AGG | + | chr4_3:11331001-11331020 | Msa0629930:intron | 20.0% |
| !! | TAAAAGGCTCAAAAAAATAA+TGG | + | chr4_3:11331017-11331036 | Msa0629930:intron | 20.0% |
| !! | AAAAGGCTCAAAAAAATAAT+GGG | + | chr4_3:11331018-11331037 | Msa0629930:intron | 20.0% |
| !! | GAATAATTAAGATTGCAAAA+AGG | + | chr4_3:11331147-11331166 | Msa0629930:intron | 20.0% |
| !! | ATTGAAAAAAATAACTCCAT+CGG | - | chr4_3:11331269-11331288 | None:intergenic | 20.0% |
| !!! | CAGACTTTTTCATTTTTTTT+TGG | - | chr4_3:11331775-11331794 | None:intergenic | 20.0% |
| !!! | CAGACATCTATTTTTTTTTT+TGG | - | chr4_3:11331992-11332011 | None:intergenic | 20.0% |
| !! | TATTTACAATATCTTGCATA+TGG | + | chr4_3:11332019-11332038 | Msa0629930:intron | 20.0% |
| !!! | TAGTTATCTAGAATATCAAT+AGG | + | chr4_3:11332102-11332121 | Msa0629930:intron | 20.0% |
| !!! | TCAATAGGTCTTATTAAATT+TGG | + | chr4_3:11332117-11332136 | Msa0629930:intron | 20.0% |
| !!! | TACAACACTTATTTTTGTAT+TGG | - | chr4_3:11332164-11332183 | None:intergenic | 20.0% |
| !! | CAAATAGTCATTAAAATTCA+TGG | + | chr4_3:11332619-11332638 | Msa0629930:intron | 20.0% |
| !!! | TTGTTTTTTATTGACCAATT+CGG | + | chr4_3:11332807-11332826 | Msa0629930:intron | 20.0% |
| !! | ACTTGTCTAAAAATTTACAT+AGG | - | chr4_3:11332922-11332941 | None:intergenic | 20.0% |
| !!! | TATGTAAATTTTTAGACAAG+TGG | + | chr4_3:11332921-11332940 | Msa0629930:intron | 20.0% |
| !!! | ATTAATCATGTTTCTTTTGA+AGG | + | chr4_3:11333024-11333043 | Msa0629930:intron | 20.0% |
| !!! | TTAATCATGTTTCTTTTGAA+GGG | + | chr4_3:11333025-11333044 | Msa0629930:intron | 20.0% |
| ! | GTCACAATTAGCAATATAAT+TGG | + | chr4_3:11329808-11329827 | Msa0629930:intron | 25.0% |
| ! | TACAACACTTATGTATGTAT+TGG | - | chr4_3:11330025-11330044 | None:intergenic | 25.0% |
| ! | TACTGAAAAAAGTTTCTCAA+CGG | - | chr4_3:11330192-11330211 | None:intergenic | 25.0% |
| !! | AAAGATTATGTAGAAAGTAC+TGG | + | chr4_3:11330215-11330234 | Msa0629930:intron | 25.0% |
| !! | TCTTTTTATGCTTCTTTTGA+AGG | + | chr4_3:11330292-11330311 | Msa0629930:intron | 25.0% |
| !!! | AATCTTTAATTTGTGTTTGG+AGG | - | chr4_3:11330833-11330852 | None:intergenic | 25.0% |
| !!! | TATTTCCTTCATTTTTCTGA+TGG | - | chr4_3:11330952-11330971 | None:intergenic | 25.0% |
| ! | TTCAATTGATGTTGAAACAT+CGG | + | chr4_3:11331283-11331302 | Msa0629930:intron | 25.0% |
| !!! | ATAGGTCTTATTAAATTTGG+TGG | + | chr4_3:11332120-11332139 | Msa0629930:intron | 25.0% |
| !!! | TAGGTCTTATTAAATTTGGT+GGG | + | chr4_3:11332121-11332140 | Msa0629930:intron | 25.0% |
| !!! | CTCATTCTAAAATATAAGCT+TGG | + | chr4_3:11332318-11332337 | Msa0629930:intron | 25.0% |
| !!! | TTGATAGTGTTACAATGTTA+CGG | - | chr4_3:11332388-11332407 | None:intergenic | 25.0% |
| ! | AGGTAAATAAATGAAGAACA+AGG | - | chr4_3:11332496-11332515 | None:intergenic | 25.0% |
| ! | CTTCATTTATTTACCTTAAG+AGG | + | chr4_3:11332500-11332519 | Msa0629930:intron | 25.0% |
| ! | TAAAAGTCACGAAAAATGAA+GGG | - | chr4_3:11332952-11332971 | None:intergenic | 25.0% |
| ! | ATAAAAGTCACGAAAAATGA+AGG | - | chr4_3:11332953-11332972 | None:intergenic | 25.0% |
| !! | ACAATTTTGCCAAGTTTAAA+TGG | + | chr4_3:11333105-11333124 | Msa0629930:CDS | 25.0% |
| ACTGCATCTTGTCTAATAAT+GGG | + | chr4_3:11329458-11329477 | Msa0629930:CDS | 30.0% | |
| GAGATATCAATTGTTGTGTT+TGG | + | chr4_3:11329518-11329537 | Msa0629930:CDS | 30.0% | |
| ATCATATAGTAACTCTTGGA+TGG | - | chr4_3:11329584-11329603 | None:intergenic | 30.0% | |
| TAGGATCATATAGTAACTCT+TGG | - | chr4_3:11329588-11329607 | None:intergenic | 30.0% | |
| ! | TTGTCCTACAACAATTTTCA+AGG | + | chr4_3:11329661-11329680 | Msa0629930:CDS | 30.0% |
| !! | AACAATTTTCAAGGTTGGAT+TGG | + | chr4_3:11329670-11329689 | Msa0629930:CDS | 30.0% |
| ATGGGTCTTACTAAATTTAG+TGG | + | chr4_3:11329981-11330000 | Msa0629930:intron | 30.0% | |
| TGGGTCTTACTAAATTTAGT+GGG | + | chr4_3:11329982-11330001 | Msa0629930:intron | 30.0% | |
| ! | AGTTAGTTTCAAAGAAACAG+AGG | - | chr4_3:11330263-11330282 | None:intergenic | 30.0% |
| ! | TTTTCCAAGACTTAGAAAGT+TGG | + | chr4_3:11330315-11330334 | Msa0629930:CDS | 30.0% |
| TATTTAGACGGTTCTCAAAA+AGG | - | chr4_3:11330351-11330370 | None:intergenic | 30.0% | |
| ACAAGATGCTACTATTTAGA+CGG | - | chr4_3:11330363-11330382 | None:intergenic | 30.0% | |
| !! | GTCAAGTTTGAATGGATTAA+CGG | + | chr4_3:11330381-11330400 | Msa0629930:CDS | 30.0% |
| TATCTATGTTGTTATAACCG+AGG | - | chr4_3:11330423-11330442 | None:intergenic | 30.0% | |
| ! | TTGTTGTTGACACATTTGAT+AGG | + | chr4_3:11330528-11330547 | Msa0629930:intron | 30.0% |
| TGTTGTTGACACATTTGATA+GGG | + | chr4_3:11330529-11330548 | Msa0629930:intron | 30.0% | |
| !!! | CTTCCTTTTTTTCATTCCTT+CGG | - | chr4_3:11330661-11330680 | None:intergenic | 30.0% |
| AACAAAAAAAGCGATTGAAG+TGG | - | chr4_3:11330709-11330728 | None:intergenic | 30.0% | |
| AAGAAGAAAAGTGAAGTTTG+TGG | - | chr4_3:11330747-11330766 | None:intergenic | 30.0% | |
| TGACACAATTTAATTGCTGA+TGG | + | chr4_3:11330921-11330940 | Msa0629930:intron | 30.0% | |
| GACACAATTTAATTGCTGAT+GGG | + | chr4_3:11330922-11330941 | Msa0629930:intron | 30.0% | |
| AAGAAGACAATGAAGAAAGA+AGG | + | chr4_3:11331210-11331229 | Msa0629930:intron | 30.0% | |
| AGAAGACAATGAAGAAAGAA+GGG | + | chr4_3:11331211-11331230 | Msa0629930:intron | 30.0% | |
| TTAACTGTCGAAGAAAACTT+CGG | + | chr4_3:11331309-11331328 | Msa0629930:intron | 30.0% | |
| GACAATGCATAAAATATGCA+AGG | + | chr4_3:11331488-11331507 | Msa0629930:intron | 30.0% | |
| CATAAAATATGCAAGGTTCA+GGG | + | chr4_3:11331495-11331514 | Msa0629930:intron | 30.0% | |
| !! | AAGAGAGATACTTTTTAACG+AGG | + | chr4_3:11332269-11332288 | Msa0629930:intron | 30.0% |
| ! | TGATAGTGTTACAATGTTAC+GGG | - | chr4_3:11332387-11332406 | None:intergenic | 30.0% |
| GATCAATTGAACTACACTTA+TGG | - | chr4_3:11332438-11332457 | None:intergenic | 30.0% | |
| AGCTATAAATTCACCTCTTA+AGG | - | chr4_3:11332516-11332535 | None:intergenic | 30.0% | |
| TTCAAATTCTCCAAATCAAC+TGG | - | chr4_3:11332680-11332699 | None:intergenic | 30.0% | |
| GTTTCCTAGACTTAAAAGAT+TGG | + | chr4_3:11333047-11333066 | Msa0629930:CDS | 30.0% | |
| ATAAAAAAACGTACCTTGAG+CGG | - | chr4_3:11333184-11333203 | None:intergenic | 30.0% | |
| GTGATGTTAATGGGAAATCA+AGG | + | chr4_3:11329385-11329404 | Msa0629930:CDS | 35.0% | |
| ATGGGAAATCAAGGATGTAA+CGG | + | chr4_3:11329394-11329413 | Msa0629930:CDS | 35.0% | |
| CACTGCATCTTGTCTAATAA+TGG | + | chr4_3:11329457-11329476 | Msa0629930:CDS | 35.0% | |
| CTGCATCTTGTCTAATAATG+GGG | + | chr4_3:11329459-11329478 | Msa0629930:CDS | 35.0% | |
| TGACAATGAATTGGGTTCAT+GGG | + | chr4_3:11329486-11329505 | Msa0629930:CDS | 35.0% | |
| ! | AATAGAGTGAAGTGCTATTC+TGG | + | chr4_3:11329541-11329560 | Msa0629930:CDS | 35.0% |
| CCAACCTTGAAAATTGTTGT+AGG | - | chr4_3:11329668-11329687 | None:intergenic | 35.0% | |
| !! | CCTACAACAATTTTCAAGGT+TGG | + | chr4_3:11329665-11329684 | Msa0629930:CDS | 35.0% |
| !!! | TTTTTTGTCAAGTAGCCTAG+TGG | - | chr4_3:11330155-11330174 | None:intergenic | 35.0% |
| AGCATCTTGTCAAGTTTGAA+TGG | + | chr4_3:11330373-11330392 | Msa0629930:CDS | 35.0% | |
| CAAACAAATTGTACCTTCAG+CGG | - | chr4_3:11330455-11330474 | None:intergenic | 35.0% | |
| TAAATTACCCAAATACCCCT+CGG | + | chr4_3:11330566-11330585 | Msa0629930:intron | 35.0% | |
| AGTTAACTGCTGAATTTGTG+TGG | + | chr4_3:11330590-11330609 | Msa0629930:intron | 35.0% | |
| TTGCCGAAGGAATGAAAAAA+AGG | + | chr4_3:11330655-11330674 | Msa0629930:intron | 35.0% | |
| CGAAGGAATGAAAAAAAGGA+AGG | + | chr4_3:11330659-11330678 | Msa0629930:intron | 35.0% | |
| !! | CTTTAATTTGTGTTTGGAGG+TGG | - | chr4_3:11330830-11330849 | None:intergenic | 35.0% |
| GAGAACCATCAGAAAAATGA+AGG | + | chr4_3:11330944-11330963 | Msa0629930:intron | 35.0% | |
| ATGAAGGAAATAAAAGGGTG+TGG | + | chr4_3:11330960-11330979 | Msa0629930:intron | 35.0% | |
| TATGAGAAAGTTATCAGCAC+AGG | + | chr4_3:11331041-11331060 | Msa0629930:intron | 35.0% | |
| GCATAAAATATGCAAGGTTC+AGG | + | chr4_3:11331494-11331513 | Msa0629930:intron | 35.0% | |
| !!! | TTGCTAGCATTGCTGATTTT+TGG | - | chr4_3:11331539-11331558 | None:intergenic | 35.0% |
| AATGAGAGATTCATGTCAGA+CGG | - | chr4_3:11332304-11332323 | None:intergenic | 35.0% | |
| GATAGTGTTACAATGTTACG+GGG | - | chr4_3:11332386-11332405 | None:intergenic | 35.0% | |
| ATTGAACTACACTTATGGAG+AGG | - | chr4_3:11332433-11332452 | None:intergenic | 35.0% | |
| ACATTGCAGTATGTTAGAGT+CGG | + | chr4_3:11332461-11332480 | Msa0629930:intron | 35.0% | |
| GACTATCTTAAAGACCGAAT+TGG | - | chr4_3:11332824-11332843 | None:intergenic | 35.0% | |
| !! | GTCTCCAATCTTTTAAGTCT+AGG | - | chr4_3:11333054-11333073 | None:intergenic | 35.0% |
| GCAGTCAATCCATTTAAACT+TGG | - | chr4_3:11333117-11333136 | None:intergenic | 35.0% | |
| !! | TGCTCTAACAACTTTGAAGT+TGG | + | chr4_3:11333134-11333153 | Msa0629930:CDS | 35.0% |
| !! | GCTCTAACAACTTTGAAGTT+GGG | + | chr4_3:11333135-11333154 | Msa0629930:CDS | 35.0% |
| ATGTAACGGTTGCTTAGAGA+AGG | + | chr4_3:11329408-11329427 | Msa0629930:CDS | 40.0% | |
| TGCTTAGAGAAGGAGAGAAT+AGG | + | chr4_3:11329418-11329437 | Msa0629930:CDS | 40.0% | |
| TGGGGATAGTGACAATGAAT+TGG | + | chr4_3:11329477-11329496 | Msa0629930:CDS | 40.0% | |
| GGGGATAGTGACAATGAATT+GGG | + | chr4_3:11329478-11329497 | Msa0629930:CDS | 40.0% | |
| GTGACAATGAATTGGGTTCA+TGG | + | chr4_3:11329485-11329504 | Msa0629930:CDS | 40.0% | |
| AATTGTTGTAGGACAAGTCG+AGG | - | chr4_3:11329657-11329676 | None:intergenic | 40.0% | |
| ! | TTATGTGAGCTCTAACCACT+AGG | + | chr4_3:11330137-11330156 | Msa0629930:intron | 40.0% |
| GTCTCCAACTTTCTAAGTCT+TGG | - | chr4_3:11330322-11330341 | None:intergenic | 40.0% | |
| GCTCTAACAACTTTGAACCT+CGG | + | chr4_3:11330403-11330422 | Msa0629930:CDS | 40.0% | |
| TTAACTACCGAGGAAAACCT+CGG | + | chr4_3:11330625-11330644 | Msa0629930:intron | 40.0% | |
| GTGTAGCACAGTGTTTGATT+TGG | - | chr4_3:11330773-11330792 | None:intergenic | 40.0% | |
| ATCAGCACAGGAAATCAGAA+TGG | + | chr4_3:11331053-11331072 | Msa0629930:intron | 40.0% | |
| ACAATGAAGAAAGAAGGGTG+TGG | + | chr4_3:11331216-11331235 | Msa0629930:intron | 40.0% | |
| AAAACTTCGGCTAACTGTTG+CGG | + | chr4_3:11331322-11331341 | Msa0629930:intron | 40.0% | |
| !!! | CTAGCATTGCTGATTTTTGG+TGG | - | chr4_3:11331536-11331555 | None:intergenic | 40.0% |
| AAGAGGTTCACCAGTTGATT+TGG | + | chr4_3:11332667-11332686 | Msa0629930:intron | 40.0% | |
| ! | GAAGTTGGGTTCTAATTCGA+TGG | + | chr4_3:11333149-11333168 | Msa0629930:CDS | 40.0% |
| GATAATAGCTTCTCCGCTGA+AGG | + | chr4_3:11330439-11330458 | Msa0629930:CDS | 45.0% | |
| !! | TTAACTGCCGAGGGGTATTT+GGG | - | chr4_3:11330576-11330595 | None:intergenic | 45.0% |
| ATTCAGCAGTTAACTGCCGA+GGG | - | chr4_3:11330585-11330604 | None:intergenic | 45.0% | |
| AATTCAGCAGTTAACTGCCG+AGG | - | chr4_3:11330586-11330605 | None:intergenic | 45.0% | |
| CTGCTGAATTTGTGTGGAAC+CGG | + | chr4_3:11330596-11330615 | Msa0629930:intron | 45.0% | |
| ! | TTAACTGCCGAGGTTTTCCT+CGG | - | chr4_3:11330635-11330654 | None:intergenic | 45.0% |
| ACTGTGCTACACTTTGCAAG+AGG | + | chr4_3:11330781-11330800 | Msa0629930:intron | 45.0% | |
| AAACTTCGGCTAACTGTTGC+GGG | + | chr4_3:11331323-11331342 | Msa0629930:intron | 45.0% | |
| ! | TGAGCTTAGCTCAGTTGGTA+GGG | + | chr4_3:11331466-11331485 | Msa0629930:intron | 45.0% |
| !!! | GCATTGCTGATTTTTGGTGG+TGG | - | chr4_3:11331533-11331552 | None:intergenic | 45.0% |
| AGAGATTCATGTCAGACGGA+GGG | - | chr4_3:11332300-11332319 | None:intergenic | 45.0% | |
| ATGGAAAACTTCTCCGCTCA+AGG | + | chr4_3:11333168-11333187 | Msa0629930:CDS | 45.0% | |
| !!! | TTAAAGAAATTTTATATATA+AGG | - | chr4_3:11329713-11329732 | None:intergenic | 5.0% |
| GAAGGAGAGAATAGGTCTGC+TGG | + | chr4_3:11329426-11329445 | Msa0629930:CDS | 50.0% | |
| GGCGTAGCTCTTCAAATGGA+CGG | - | chr4_3:11329633-11329652 | None:intergenic | 50.0% | |
| ! | AGGAGGCGTAGCTCTTCAAA+TGG | - | chr4_3:11329637-11329656 | None:intergenic | 50.0% |
| TGTTGTAGGACAAGTCGAGG+AGG | - | chr4_3:11329654-11329673 | None:intergenic | 50.0% | |
| !! | CAAGGTTGGATTGGCAACGA+AGG | + | chr4_3:11329679-11329698 | Msa0629930:CDS | 50.0% |
| !! | GTTAACTGCCGAGGGGTATT+TGG | - | chr4_3:11330577-11330596 | None:intergenic | 50.0% |
| TTCAGCAGTTAACTGCCGAG+GGG | - | chr4_3:11330584-11330603 | None:intergenic | 50.0% | |
| CCTCGGTAGTTAACTGCATC+CGG | - | chr4_3:11330618-11330637 | None:intergenic | 50.0% | |
| GTGTGGCGTTTACAACTCCT+TGG | + | chr4_3:11331233-11331252 | Msa0629930:intron | 50.0% | |
| CCATCGGCACTTAAGTACCA+AGG | - | chr4_3:11331253-11331272 | None:intergenic | 50.0% | |
| !! | CCTTGGTACTTAAGTGCCGA+TGG | + | chr4_3:11331250-11331269 | Msa0629930:intron | 50.0% |
| AACTTCGGCTAACTGTTGCG+GGG | + | chr4_3:11331324-11331343 | Msa0629930:intron | 50.0% | |
| GTGAGCTTAGCTCAGTTGGT+AGG | + | chr4_3:11331465-11331484 | Msa0629930:intron | 50.0% | |
| !!! | TGCTGATTTTTGGTGGTGGC+CGG | - | chr4_3:11331529-11331548 | None:intergenic | 50.0% |
| GAGAGATTCATGTCAGACGG+AGG | - | chr4_3:11332301-11332320 | None:intergenic | 50.0% | |
| CCGGATGCAGTTAACTACCG+AGG | + | chr4_3:11330615-11330634 | Msa0629930:intron | 55.0% | |
| CCTTCGGCAATTAACTGCCG+AGG | - | chr4_3:11330645-11330664 | None:intergenic | 55.0% | |
| CCTCGGCAGTTAATTGCCGA+AGG | + | chr4_3:11330642-11330661 | Msa0629930:intron | 55.0% | |
| ACTTCGGCTAACTGTTGCGG+GGG | + | chr4_3:11331325-11331344 | Msa0629930:intron | 55.0% | |
| GAGCTAAGCTCACGAGGACA+AGG | - | chr4_3:11331458-11331477 | None:intergenic | 55.0% | |
| CCAACTGAGCTAAGCTCACG+AGG | - | chr4_3:11331464-11331483 | None:intergenic | 55.0% | |
| CCTCGTGAGCTTAGCTCAGT+TGG | + | chr4_3:11331461-11331480 | Msa0629930:intron | 55.0% | |
| AAGGTTCAGGGTTCGAACCC+CGG | + | chr4_3:11331507-11331526 | Msa0629930:intron | 55.0% | |
| !!! | CTGATTTTTGGTGGTGGCCG+GGG | - | chr4_3:11331527-11331546 | None:intergenic | 55.0% |
| !!! | GCTGATTTTTGGTGGTGGCC+GGG | - | chr4_3:11331528-11331547 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 11329346 | 11333218 | 11329346 | ID=Msa0629930;Name=Msa0629930 |
| chr4_3 | mRNA | 11329346 | 11333218 | 11329346 | ID=Msa0629930-mRNA-1;Parent=Msa0629930;Name=Msa0629930-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|1|1|3|0|224 |
| chr4_3 | exon | 11329346 | 11329700 | 11329346 | ID=Msa0629930-mRNA-1:exon:3402;Parent=Msa0629930-mRNA-1 |
| chr4_3 | exon | 11330314 | 11330460 | 11330314 | ID=Msa0629930-mRNA-1:exon:3403;Parent=Msa0629930-mRNA-1 |
| chr4_3 | exon | 11333046 | 11333218 | 11333046 | ID=Msa0629930-mRNA-1:exon:3404;Parent=Msa0629930-mRNA-1 |
| chr4_3 | CDS | 11329346 | 11329700 | 11329346 | ID=Msa0629930-mRNA-1:cds;Parent=Msa0629930-mRNA-1 |
| chr4_3 | CDS | 11330314 | 11330460 | 11330314 | ID=Msa0629930-mRNA-1:cds;Parent=Msa0629930-mRNA-1 |
| chr4_3 | CDS | 11333046 | 11333218 | 11333046 | ID=Msa0629930-mRNA-1:cds;Parent=Msa0629930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
