Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0924370 | XP_003620394.1 | 68.778 | 221 | 57 | 2 | 1 | 219 | 1 | 211 | 1.04e-98 | 296 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0924370 | sp|P0C8L4|Y4648_ARATH | 50.000 | 216 | 93 | 4 | 1 | 211 | 3 | 208 | 5.24e-60 | 190 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0629850 | Msa0924370 | 0.805020 | 1.632964e-49 | -8.615850e-47 |
| Msa0815320 | Msa0924370 | 0.820167 | 7.912871e-53 | -8.615850e-47 |
| Msa0818010 | Msa0924370 | 0.824861 | 6.416554e-54 | -8.615850e-47 |
| Msa0818030 | Msa0924370 | 0.837200 | 5.980948e-57 | -8.615850e-47 |
| Msa0211680 | Msa0924370 | 0.809556 | 1.785269e-50 | -8.615850e-47 |
| Msa0235190 | Msa0924370 | 0.824372 | 8.365483e-54 | -8.615850e-47 |
| Msa0458700 | Msa0924370 | 0.816071 | 6.680418e-52 | -8.615850e-47 |
| Msa0273570 | Msa0924370 | 0.815904 | 7.277268e-52 | -8.615850e-47 |
| Msa0533290 | Msa0924370 | 0.825034 | 5.839667e-54 | -8.615850e-47 |
| Msa0533430 | Msa0924370 | 0.840480 | 8.478815e-58 | -8.615850e-47 |
| Msa0580610 | Msa0924370 | 0.825336 | 4.955573e-54 | -8.615850e-47 |
| Msa0858360 | Msa0924370 | 0.867769 | 1.071610e-65 | -8.615850e-47 |
| Msa0884920 | Msa0924370 | 0.806709 | 7.211287e-50 | -8.615850e-47 |
| Msa0902020 | Msa0924370 | 0.871349 | 7.314059e-67 | -8.615850e-47 |
| Msa0912370 | Msa0924370 | 0.819383 | 1.195541e-52 | -8.615850e-47 |
| Msa0912500 | Msa0924370 | 0.813345 | 2.683532e-51 | -8.615850e-47 |
| Msa0924370 | Msa0963310 | 0.890115 | 1.318500e-73 | -8.615850e-47 |
| Msa0924370 | Msa1006250 | 0.829959 | 3.844579e-55 | -8.615850e-47 |
| Msa0924370 | Msa1027240 | 0.816648 | 4.963350e-52 | -8.615850e-47 |
| Msa0924370 | Msa1232060 | 0.802061 | 6.706912e-49 | -8.615850e-47 |
| Msa0924370 | Msa1288000 | 0.827997 | 1.148369e-54 | -8.615850e-47 |
| Msa0924370 | Msa1351080 | 0.803550 | 3.305171e-49 | -8.615850e-47 |
| Msa0924370 | Msa1423990 | 0.802894 | 4.516869e-49 | -8.615850e-47 |
| Msa0924370 | Msa1444370 | 0.846892 | 1.632124e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0924370 | MtrunA17_Chr6g0483591 | 68.778 | 221 | 57 | 2 | 1 | 219 | 1 | 211 | 9.56e-103 | 296 |
| Msa0924370 | MtrunA17_Chr6g0483571 | 60.849 | 212 | 70 | 3 | 1 | 209 | 1 | 202 | 1.35e-80 | 239 |
| Msa0924370 | MtrunA17_Chr6g0483551 | 61.033 | 213 | 70 | 3 | 1 | 210 | 1 | 203 | 6.64e-78 | 233 |
| Msa0924370 | MtrunA17_Chr5g0444781 | 49.545 | 220 | 99 | 2 | 1 | 218 | 5 | 214 | 2.25e-69 | 215 |
| Msa0924370 | MtrunA17_Chr2g0290801 | 46.829 | 205 | 96 | 3 | 8 | 209 | 45 | 239 | 2.54e-56 | 179 |
| Msa0924370 | MtrunA17_Chr3g0103011 | 48.684 | 152 | 76 | 1 | 60 | 209 | 18 | 169 | 2.99e-41 | 144 |
| Msa0924370 | MtrunA17_Chr5g0444791 | 43.624 | 149 | 77 | 2 | 65 | 211 | 19 | 162 | 6.15e-34 | 121 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0924370 | AT4G26485.1 | 50.000 | 216 | 93 | 4 | 1 | 211 | 3 | 208 | 5.33e-61 | 190 |
| Msa0924370 | AT5G56075.1 | 46.544 | 217 | 84 | 5 | 4 | 214 | 65 | 255 | 4.07e-54 | 174 |
| Msa0924370 | AT1G55790.1 | 45.291 | 223 | 105 | 3 | 3 | 218 | 18 | 230 | 3.21e-53 | 176 |
| Msa0924370 | AT5G25030.1 | 43.128 | 211 | 93 | 5 | 4 | 211 | 7 | 193 | 8.06e-46 | 151 |
| Msa0924370 | AT5G56060.1 | 50.365 | 137 | 64 | 3 | 65 | 199 | 15 | 149 | 9.32e-40 | 135 |
| Msa0924370 | AT1G55803.1 | 46.610 | 118 | 51 | 2 | 6 | 121 | 19 | 126 | 4.77e-24 | 93.2 |
| Msa0924370 | AT2G11045.1 | 38.125 | 160 | 61 | 6 | 55 | 211 | 12 | 136 | 2.62e-20 | 84.0 |
| Msa0924370 | AT1G55800.1 | 42.574 | 101 | 53 | 1 | 125 | 220 | 10 | 110 | 2.24e-18 | 81.3 |
Find 49 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTGCTTGGCAAAGGCATT+TGG | 0.261323 | 6_2:-66258736 | Msa0924370:CDS |
| TTGATCTTCCACTCAGTAAA+TGG | 0.272354 | 6_2:+66257447 | None:intergenic |
| TGTTATCATAGTTTCCCTAT+TGG | 0.304013 | 6_2:-66257324 | Msa0924370:CDS |
| TGTGCATAACTTACAGAATC+TGG | 0.305326 | 6_2:+66257700 | None:intergenic |
| AAAGTACTACTCTTTCCAAT+AGG | 0.320713 | 6_2:+66257309 | None:intergenic |
| GAGTTTCTAGTGCGGAAGTA+TGG | 0.345670 | 6_2:-66257885 | Msa0924370:CDS |
| TTGATTGAACTTGAGGGTCT+TGG | 0.397209 | 6_2:-66257852 | Msa0924370:CDS |
| TTTCTCCTTCTCACTTTGCT+TGG | 0.398022 | 6_2:-66258749 | Msa0924370:CDS |
| TGTAGCCGGTGGCGGTTGTA+AGG | 0.400513 | 6_2:-66257246 | None:intergenic |
| ATTTATTATTCTTGAGATGC+TGG | 0.407798 | 6_2:+66257784 | None:intergenic |
| TATAATAACAAGAGAGGATC+TGG | 0.413996 | 6_2:-66257354 | Msa0924370:CDS |
| ATTGGAGTTTATTGAAGAAG+TGG | 0.422371 | 6_2:-66257403 | Msa0924370:CDS |
| CTTCTCACTTTGCTTGGCAA+AGG | 0.429262 | 6_2:-66258743 | Msa0924370:CDS |
| AAGTACTACTCTTTCCAATA+GGG | 0.433046 | 6_2:+66257310 | None:intergenic |
| ATTGAAGAAGTGGAGTTTCA+AGG | 0.461497 | 6_2:-66257393 | Msa0924370:CDS |
| AATCTGGCAATGGTGAAATT+CGG | 0.473775 | 6_2:+66257716 | None:intergenic |
| CCTCTCTTGTTATTATAACC+TGG | 0.475242 | 6_2:+66257360 | None:intergenic |
| TTGCCAAAATGGTAGAGAAA+AGG | 0.496041 | 6_2:-66258822 | None:intergenic |
| TAGCAACTTGATTGAACTTG+AGG | 0.511290 | 6_2:-66257859 | Msa0924370:CDS |
| GATTAGTGAGTGGATTTCTA+CGG | 0.516725 | 6_2:-66257530 | Msa0924370:CDS |
| TGAGTGGAAGATCAAGGATC+TGG | 0.521381 | 6_2:-66257439 | Msa0924370:CDS |
| TCTGGCAAAAGATGAGGGAT+TGG | 0.522145 | 6_2:-66257421 | Msa0924370:CDS |
| TTATTGATTGTAGCCGGTGG+CGG | 0.526880 | 6_2:-66257254 | Msa0924370:CDS |
| TAAAATTGCAGGCTTCATAG+AGG | 0.536898 | 6_2:-66257552 | Msa0924370:intron |
| AGCAACTTGATTGAACTTGA+GGG | 0.556641 | 6_2:-66257858 | Msa0924370:CDS |
| ATTTACTGAGTGGAAGATCA+AGG | 0.558209 | 6_2:-66257445 | Msa0924370:CDS |
| AACATTCACTTCGTGCAAGA+TGG | 0.561233 | 6_2:+66257824 | None:intergenic |
| CAAGGATCTGGCAAAAGATG+AGG | 0.571437 | 6_2:-66257427 | Msa0924370:CDS |
| CCGGGCCTTACAACCGCCAC+CGG | 0.578486 | 6_2:+66257241 | None:intergenic |
| TAGTACTTTCAAATTTGCCA+AGG | 0.578937 | 6_2:-66257295 | Msa0924370:CDS |
| ATGAGGTTATTGATTGTAGC+CGG | 0.578986 | 6_2:-66257260 | Msa0924370:CDS |
| ATCGAGGGATGGATCCATGT+TGG | 0.580635 | 6_2:+66258134 | None:intergenic |
| GGATCCATGTTGGAGCTATG+TGG | 0.581473 | 6_2:+66258144 | None:intergenic |
| AATAAATAGGGAAAAGCATG+TGG | 0.581796 | 6_2:-66258177 | Msa0924370:intron |
| AAAATATACCTCTACTATCG+AGG | 0.588522 | 6_2:+66258118 | None:intergenic |
| CCAGGTTATAATAACAAGAG+AGG | 0.602479 | 6_2:-66257360 | Msa0924370:CDS |
| CGAAGTGAATGTTCACAACA+TGG | 0.605758 | 6_2:-66257814 | Msa0924370:CDS |
| GATCCATGTTGGAGCTATGT+GGG | 0.607606 | 6_2:+66258145 | None:intergenic |
| CTTCATAGAGGATTAGTGAG+TGG | 0.613571 | 6_2:-66257540 | Msa0924370:CDS |
| GTAAAATTGAAACCAGCATG+TGG | 0.613932 | 6_2:+66257738 | None:intergenic |
| AAGGATCTGGCAAAAGATGA+GGG | 0.615741 | 6_2:-66257426 | Msa0924370:CDS |
| AAATATACCTCTACTATCGA+GGG | 0.616450 | 6_2:+66258119 | None:intergenic |
| CTTTGCCAAGCAAAGTGAGA+AGG | 0.620537 | 6_2:+66258744 | None:intergenic |
| ATACCTCTACTATCGAGGGA+TGG | 0.626130 | 6_2:+66258123 | None:intergenic |
| AGGTTATTGATTGTAGCCGG+TGG | 0.629115 | 6_2:-66257257 | Msa0924370:CDS |
| TAACTTACAGAATCTGGCAA+TGG | 0.641546 | 6_2:+66257706 | None:intergenic |
| GATCCATCCCTCGATAGTAG+AGG | 0.656497 | 6_2:-66258126 | Msa0924370:intron |
| AGTCCCACATAGCTCCAACA+TGG | 0.656694 | 6_2:-66258148 | Msa0924370:CDS |
| CAACACATCCATTTACTGAG+TGG | 0.685186 | 6_2:-66257455 | Msa0924370:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTAATATATTTTTTAT+TGG | + | chr6_2:66257870-66257889 | None:intergenic | 0.0% |
| !! | AAAAAATATATTAAATAAAT+AGG | - | chr6_2:66257872-66257891 | Msa0924370:CDS | 0.0% |
| !! | AAAAATATATTAAATAAATA+GGG | - | chr6_2:66257873-66257892 | Msa0924370:CDS | 0.0% |
| !!! | TTATTTAATATATTTTTTAT+TGG | + | chr6_2:66257870-66257889 | None:intergenic | 0.0% |
| !! | AAAAAATATATTAAATAAAT+AGG | - | chr6_2:66257872-66257891 | Msa0924370:CDS | 0.0% |
| !! | AAAAATATATTAAATAAATA+GGG | - | chr6_2:66257873-66257892 | Msa0924370:CDS | 0.0% |
| !! | AACTAAAAAAAACTAATAAA+TGG | - | chr6_2:66257659-66257678 | Msa0924370:intron | 10.0% |
| !! | TAAAAAAAATATTCTTTAGT+TGG | - | chr6_2:66258020-66258039 | Msa0924370:intron | 10.0% |
| !!! | TTTTTTAAAAATAAAATTGC+AGG | - | chr6_2:66258499-66258518 | Msa0924370:intron | 10.0% |
| !! | AACTAAAAAAAACTAATAAA+TGG | - | chr6_2:66257659-66257678 | Msa0924370:intron | 10.0% |
| !! | TAAAAAAAATATTCTTTAGT+TGG | - | chr6_2:66258020-66258039 | Msa0924370:intron | 10.0% |
| !!! | TTTTTTAAAAATAAAATTGC+AGG | - | chr6_2:66258499-66258518 | Msa0924370:intron | 10.0% |
| !! | TATCCAAGTTTATTAAAATA+TGG | + | chr6_2:66258002-66258021 | None:intergenic | 15.0% |
| !! | TATCCAAGTTTATTAAAATA+TGG | + | chr6_2:66258002-66258021 | None:intergenic | 15.0% |
| !! | TTTCTATATAAGTTACAAGA+TGG | - | chr6_2:66257580-66257599 | Msa0924370:intron | 20.0% |
| !! | AAAAAACTAATAAATGGCTT+TGG | - | chr6_2:66257665-66257684 | Msa0924370:intron | 20.0% |
| !! | TTTATTGGATAAAACACTTA+CGG | + | chr6_2:66257855-66257874 | None:intergenic | 20.0% |
| !!! | ACTCCATATTTTAATAAACT+TGG | - | chr6_2:66257996-66258015 | Msa0924370:intron | 20.0% |
| !! | TTTCTATATAAGTTACAAGA+TGG | - | chr6_2:66257580-66257599 | Msa0924370:intron | 20.0% |
| !! | AAAAAACTAATAAATGGCTT+TGG | - | chr6_2:66257665-66257684 | Msa0924370:intron | 20.0% |
| !! | TTTATTGGATAAAACACTTA+CGG | + | chr6_2:66257855-66257874 | None:intergenic | 20.0% |
| !!! | ACTCCATATTTTAATAAACT+TGG | - | chr6_2:66257996-66258015 | Msa0924370:intron | 20.0% |
| !!! | TTTAGCTCATTTTCAACAAA+TGG | + | chr6_2:66257526-66257545 | None:intergenic | 25.0% |
| ! | AGTAACCTATGTAACAAAAT+AGG | + | chr6_2:66257624-66257643 | None:intergenic | 25.0% |
| ! | AAGAAATGAAACATATCAAG+AGG | - | chr6_2:66257781-66257800 | Msa0924370:CDS | 25.0% |
| ! | ATATCAAGAGGAATTGAAAA+TGG | - | chr6_2:66257793-66257812 | Msa0924370:CDS | 25.0% |
| ! | GGAAATGAAACATATTATCA+TGG | - | chr6_2:66257814-66257833 | Msa0924370:CDS | 25.0% |
| !!! | TATATTTTGAATGCTCAACT+TGG | - | chr6_2:66257959-66257978 | Msa0924370:intron | 25.0% |
| ! | GTTATAACTTCCCTAATTAA+TGG | - | chr6_2:66258063-66258082 | Msa0924370:intron | 25.0% |
| ! | AAAAACAGCACCATTAATTA+GGG | + | chr6_2:66258076-66258095 | None:intergenic | 25.0% |
| ! | AAAAAACAGCACCATTAATT+AGG | + | chr6_2:66258077-66258096 | None:intergenic | 25.0% |
| ! | ATTTATTATTCTTGAGATGC+TGG | + | chr6_2:66258281-66258300 | None:intergenic | 25.0% |
| !!! | TTTAGCTCATTTTCAACAAA+TGG | + | chr6_2:66257526-66257545 | None:intergenic | 25.0% |
| ! | AGTAACCTATGTAACAAAAT+AGG | + | chr6_2:66257624-66257643 | None:intergenic | 25.0% |
| ! | AAGAAATGAAACATATCAAG+AGG | - | chr6_2:66257781-66257800 | Msa0924370:CDS | 25.0% |
| ! | ATATCAAGAGGAATTGAAAA+TGG | - | chr6_2:66257793-66257812 | Msa0924370:CDS | 25.0% |
| ! | GGAAATGAAACATATTATCA+TGG | - | chr6_2:66257814-66257833 | Msa0924370:CDS | 25.0% |
| !!! | TATATTTTGAATGCTCAACT+TGG | - | chr6_2:66257959-66257978 | Msa0924370:intron | 25.0% |
| ! | GTTATAACTTCCCTAATTAA+TGG | - | chr6_2:66258063-66258082 | Msa0924370:intron | 25.0% |
| ! | AAAAACAGCACCATTAATTA+GGG | + | chr6_2:66258076-66258095 | None:intergenic | 25.0% |
| ! | AAAAAACAGCACCATTAATT+AGG | + | chr6_2:66258077-66258096 | None:intergenic | 25.0% |
| ! | ATTTATTATTCTTGAGATGC+TGG | + | chr6_2:66258281-66258300 | None:intergenic | 25.0% |
| ! | TCTCACAAAATTTTGCTTGT+GGG | - | chr6_2:66257281-66257300 | Msa0924370:CDS | 30.0% |
| ATGTGTTGTATCAAACAATG+AGG | + | chr6_2:66257481-66257500 | None:intergenic | 30.0% | |
| ! | GATCACCTATTTTGTTACAT+AGG | - | chr6_2:66257616-66257635 | Msa0924370:intron | 30.0% |
| GCACATAAGTCATATTATCA+TGG | - | chr6_2:66257707-66257726 | Msa0924370:intron | 30.0% | |
| !!! | CATGTTCTTTTTCAACTAAG+TGG | - | chr6_2:66257732-66257751 | Msa0924370:CDS | 30.0% |
| ! | AATAAATAGGGAAAAGCATG+TGG | - | chr6_2:66257885-66257904 | Msa0924370:CDS | 30.0% |
| AAATATACCTCTACTATCGA+GGG | + | chr6_2:66257946-66257965 | None:intergenic | 30.0% | |
| AAAATATACCTCTACTATCG+AGG | + | chr6_2:66257947-66257966 | None:intergenic | 30.0% | |
| !!! | ATTTTGAAGAGTTTCTAGTG+CGG | - | chr6_2:66258169-66258188 | Msa0924370:CDS | 30.0% |
| !! | ATCTTTAATTTTCCACATGC+TGG | - | chr6_2:66258312-66258331 | Msa0924370:intron | 30.0% |
| ! | GCTAAAAACATGCTTTCTTT+TGG | - | chr6_2:66258558-66258577 | Msa0924370:intron | 30.0% |
| ! | AAAAACATGCTTTCTTTTGG+AGG | - | chr6_2:66258561-66258580 | Msa0924370:intron | 30.0% |
| ATTGGAGTTTATTGAAGAAG+TGG | - | chr6_2:66258659-66258678 | Msa0924370:intron | 30.0% | |
| ! | TTTCAAGGATCATTTTATCC+AGG | - | chr6_2:66258684-66258703 | Msa0924370:intron | 30.0% |
| TATAATAACAAGAGAGGATC+TGG | - | chr6_2:66258708-66258727 | Msa0924370:intron | 30.0% | |
| TGTTATCATAGTTTCCCTAT+TGG | - | chr6_2:66258738-66258757 | Msa0924370:CDS | 30.0% | |
| AAGTACTACTCTTTCCAATA+GGG | + | chr6_2:66258755-66258774 | None:intergenic | 30.0% | |
| ! | AAAGTACTACTCTTTCCAAT+AGG | + | chr6_2:66258756-66258775 | None:intergenic | 30.0% |
| TAGTACTTTCAAATTTGCCA+AGG | - | chr6_2:66258767-66258786 | Msa0924370:CDS | 30.0% | |
| !!! | ATTTGCCAAGGAGAATTTTT+TGG | - | chr6_2:66258779-66258798 | Msa0924370:CDS | 30.0% |
| ! | TCTCACAAAATTTTGCTTGT+GGG | - | chr6_2:66257281-66257300 | Msa0924370:CDS | 30.0% |
| ATGTGTTGTATCAAACAATG+AGG | + | chr6_2:66257481-66257500 | None:intergenic | 30.0% | |
| ! | GATCACCTATTTTGTTACAT+AGG | - | chr6_2:66257616-66257635 | Msa0924370:intron | 30.0% |
| GCACATAAGTCATATTATCA+TGG | - | chr6_2:66257707-66257726 | Msa0924370:intron | 30.0% | |
| !!! | CATGTTCTTTTTCAACTAAG+TGG | - | chr6_2:66257732-66257751 | Msa0924370:CDS | 30.0% |
| ! | AATAAATAGGGAAAAGCATG+TGG | - | chr6_2:66257885-66257904 | Msa0924370:CDS | 30.0% |
| AAATATACCTCTACTATCGA+GGG | + | chr6_2:66257946-66257965 | None:intergenic | 30.0% | |
| AAAATATACCTCTACTATCG+AGG | + | chr6_2:66257947-66257966 | None:intergenic | 30.0% | |
| !!! | ATTTTGAAGAGTTTCTAGTG+CGG | - | chr6_2:66258169-66258188 | Msa0924370:CDS | 30.0% |
| !! | ATCTTTAATTTTCCACATGC+TGG | - | chr6_2:66258312-66258331 | Msa0924370:intron | 30.0% |
| ! | GCTAAAAACATGCTTTCTTT+TGG | - | chr6_2:66258558-66258577 | Msa0924370:intron | 30.0% |
| ! | AAAAACATGCTTTCTTTTGG+AGG | - | chr6_2:66258561-66258580 | Msa0924370:intron | 30.0% |
| ATTGGAGTTTATTGAAGAAG+TGG | - | chr6_2:66258659-66258678 | Msa0924370:intron | 30.0% | |
| ! | TTTCAAGGATCATTTTATCC+AGG | - | chr6_2:66258684-66258703 | Msa0924370:intron | 30.0% |
| TATAATAACAAGAGAGGATC+TGG | - | chr6_2:66258708-66258727 | Msa0924370:intron | 30.0% | |
| TGTTATCATAGTTTCCCTAT+TGG | - | chr6_2:66258738-66258757 | Msa0924370:CDS | 30.0% | |
| AAGTACTACTCTTTCCAATA+GGG | + | chr6_2:66258755-66258774 | None:intergenic | 30.0% | |
| ! | AAAGTACTACTCTTTCCAAT+AGG | + | chr6_2:66258756-66258775 | None:intergenic | 30.0% |
| TAGTACTTTCAAATTTGCCA+AGG | - | chr6_2:66258767-66258786 | Msa0924370:CDS | 30.0% | |
| !!! | ATTTGCCAAGGAGAATTTTT+TGG | - | chr6_2:66258779-66258798 | Msa0924370:CDS | 30.0% |
| ! | CTCTCACAAAATTTTGCTTG+TGG | - | chr6_2:66257280-66257299 | Msa0924370:CDS | 35.0% |
| ! | AAAATTTTGCTTGTGGGAGA+GGG | - | chr6_2:66257287-66257306 | Msa0924370:CDS | 35.0% |
| GTAACAAAATAGGTGATCAG+TGG | + | chr6_2:66257614-66257633 | None:intergenic | 35.0% | |
| TAGCAACTTGATTGAACTTG+AGG | - | chr6_2:66258203-66258222 | Msa0924370:intron | 35.0% | |
| AGCAACTTGATTGAACTTGA+GGG | - | chr6_2:66258204-66258223 | Msa0924370:intron | 35.0% | |
| GTAAAATTGAAACCAGCATG+TGG | + | chr6_2:66258327-66258346 | None:intergenic | 35.0% | |
| AATCTGGCAATGGTGAAATT+CGG | + | chr6_2:66258349-66258368 | None:intergenic | 35.0% | |
| TAACTTACAGAATCTGGCAA+TGG | + | chr6_2:66258359-66258378 | None:intergenic | 35.0% | |
| TGTGCATAACTTACAGAATC+TGG | + | chr6_2:66258365-66258384 | None:intergenic | 35.0% | |
| TAAAATTGCAGGCTTCATAG+AGG | - | chr6_2:66258510-66258529 | Msa0924370:intron | 35.0% | |
| ! | GATTAGTGAGTGGATTTCTA+CGG | - | chr6_2:66258532-66258551 | Msa0924370:intron | 35.0% |
| TTGATCTTCCACTCAGTAAA+TGG | + | chr6_2:66258618-66258637 | None:intergenic | 35.0% | |
| ATTTACTGAGTGGAAGATCA+AGG | - | chr6_2:66258617-66258636 | Msa0924370:intron | 35.0% | |
| ATTGAAGAAGTGGAGTTTCA+AGG | - | chr6_2:66258669-66258688 | Msa0924370:intron | 35.0% | |
| !! | CCTCTCTTGTTATTATAACC+TGG | + | chr6_2:66258705-66258724 | None:intergenic | 35.0% |
| CCAGGTTATAATAACAAGAG+AGG | - | chr6_2:66258702-66258721 | Msa0924370:intron | 35.0% | |
| CTCATCCAAAAAATTCTCCT+TGG | + | chr6_2:66258787-66258806 | None:intergenic | 35.0% | |
| !!! | CAAGGAGAATTTTTTGGATG+AGG | - | chr6_2:66258785-66258804 | Msa0924370:CDS | 35.0% |
| ! | ATGAGGTTATTGATTGTAGC+CGG | - | chr6_2:66258802-66258821 | Msa0924370:CDS | 35.0% |
| ! | CTCTCACAAAATTTTGCTTG+TGG | - | chr6_2:66257280-66257299 | Msa0924370:CDS | 35.0% |
| ! | AAAATTTTGCTTGTGGGAGA+GGG | - | chr6_2:66257287-66257306 | Msa0924370:CDS | 35.0% |
| GTAACAAAATAGGTGATCAG+TGG | + | chr6_2:66257614-66257633 | None:intergenic | 35.0% | |
| TAGCAACTTGATTGAACTTG+AGG | - | chr6_2:66258203-66258222 | Msa0924370:intron | 35.0% | |
| AGCAACTTGATTGAACTTGA+GGG | - | chr6_2:66258204-66258223 | Msa0924370:intron | 35.0% | |
| GTAAAATTGAAACCAGCATG+TGG | + | chr6_2:66258327-66258346 | None:intergenic | 35.0% | |
| AATCTGGCAATGGTGAAATT+CGG | + | chr6_2:66258349-66258368 | None:intergenic | 35.0% | |
| TAACTTACAGAATCTGGCAA+TGG | + | chr6_2:66258359-66258378 | None:intergenic | 35.0% | |
| TGTGCATAACTTACAGAATC+TGG | + | chr6_2:66258365-66258384 | None:intergenic | 35.0% | |
| TAAAATTGCAGGCTTCATAG+AGG | - | chr6_2:66258510-66258529 | Msa0924370:intron | 35.0% | |
| ! | GATTAGTGAGTGGATTTCTA+CGG | - | chr6_2:66258532-66258551 | Msa0924370:intron | 35.0% |
| TTGATCTTCCACTCAGTAAA+TGG | + | chr6_2:66258618-66258637 | None:intergenic | 35.0% | |
| ATTTACTGAGTGGAAGATCA+AGG | - | chr6_2:66258617-66258636 | Msa0924370:intron | 35.0% | |
| ATTGAAGAAGTGGAGTTTCA+AGG | - | chr6_2:66258669-66258688 | Msa0924370:intron | 35.0% | |
| !! | CCTCTCTTGTTATTATAACC+TGG | + | chr6_2:66258705-66258724 | None:intergenic | 35.0% |
| CCAGGTTATAATAACAAGAG+AGG | - | chr6_2:66258702-66258721 | Msa0924370:intron | 35.0% | |
| CTCATCCAAAAAATTCTCCT+TGG | + | chr6_2:66258787-66258806 | None:intergenic | 35.0% | |
| !!! | CAAGGAGAATTTTTTGGATG+AGG | - | chr6_2:66258785-66258804 | Msa0924370:CDS | 35.0% |
| ! | ATGAGGTTATTGATTGTAGC+CGG | - | chr6_2:66258802-66258821 | Msa0924370:CDS | 35.0% |
| ! | CAAAATTTTGCTTGTGGGAG+AGG | - | chr6_2:66257286-66257305 | Msa0924370:CDS | 40.0% |
| TTTCTCCTTCTCACTTTGCT+TGG | - | chr6_2:66257313-66257332 | Msa0924370:CDS | 40.0% | |
| TACCTCTTTGGATAGTAGCA+GGG | - | chr6_2:66257370-66257389 | Msa0924370:CDS | 40.0% | |
| ATCCAGACTTTAGGTACATG+TGG | - | chr6_2:66257397-66257416 | Msa0924370:CDS | 40.0% | |
| GCTCAACTTGGCACAATATA+TGG | - | chr6_2:66257971-66257990 | Msa0924370:intron | 40.0% | |
| TTGATTGAACTTGAGGGTCT+TGG | - | chr6_2:66258210-66258229 | Msa0924370:intron | 40.0% | |
| AACATTCACTTCGTGCAAGA+TGG | + | chr6_2:66258241-66258260 | None:intergenic | 40.0% | |
| CGAAGTGAATGTTCACAACA+TGG | - | chr6_2:66258248-66258267 | Msa0924370:intron | 40.0% | |
| ! | CTTCATAGAGGATTAGTGAG+TGG | - | chr6_2:66258522-66258541 | Msa0924370:intron | 40.0% |
| CAACACATCCATTTACTGAG+TGG | - | chr6_2:66258607-66258626 | Msa0924370:intron | 40.0% | |
| AAGGATCTGGCAAAAGATGA+GGG | - | chr6_2:66258636-66258655 | Msa0924370:intron | 40.0% | |
| ! | CAAAATTTTGCTTGTGGGAG+AGG | - | chr6_2:66257286-66257305 | Msa0924370:CDS | 40.0% |
| TTTCTCCTTCTCACTTTGCT+TGG | - | chr6_2:66257313-66257332 | Msa0924370:CDS | 40.0% | |
| TACCTCTTTGGATAGTAGCA+GGG | - | chr6_2:66257370-66257389 | Msa0924370:CDS | 40.0% | |
| ATCCAGACTTTAGGTACATG+TGG | - | chr6_2:66257397-66257416 | Msa0924370:CDS | 40.0% | |
| GCTCAACTTGGCACAATATA+TGG | - | chr6_2:66257971-66257990 | Msa0924370:intron | 40.0% | |
| TTGATTGAACTTGAGGGTCT+TGG | - | chr6_2:66258210-66258229 | Msa0924370:intron | 40.0% | |
| AACATTCACTTCGTGCAAGA+TGG | + | chr6_2:66258241-66258260 | None:intergenic | 40.0% | |
| CGAAGTGAATGTTCACAACA+TGG | - | chr6_2:66258248-66258267 | Msa0924370:intron | 40.0% | |
| ! | CTTCATAGAGGATTAGTGAG+TGG | - | chr6_2:66258522-66258541 | Msa0924370:intron | 40.0% |
| CAACACATCCATTTACTGAG+TGG | - | chr6_2:66258607-66258626 | Msa0924370:intron | 40.0% | |
| AAGGATCTGGCAAAAGATGA+GGG | - | chr6_2:66258636-66258655 | Msa0924370:intron | 40.0% | |
| CTTTGCCAAGCAAAGTGAGA+AGG | + | chr6_2:66257321-66257340 | None:intergenic | 45.0% | |
| CTTCTCACTTTGCTTGGCAA+AGG | - | chr6_2:66257319-66257338 | Msa0924370:CDS | 45.0% | |
| !! | CTTTGCTTGGCAAAGGCATT+TGG | - | chr6_2:66257326-66257345 | Msa0924370:CDS | 45.0% |
| GAACATGACTGCTACCTCTT+TGG | - | chr6_2:66257358-66257377 | Msa0924370:CDS | 45.0% | |
| CTACCTCTTTGGATAGTAGC+AGG | - | chr6_2:66257369-66257388 | Msa0924370:CDS | 45.0% | |
| ACCTCTTTGGATAGTAGCAG+GGG | - | chr6_2:66257371-66257390 | Msa0924370:CDS | 45.0% | |
| CTCCACATGTACCTAAAGTC+TGG | + | chr6_2:66257402-66257421 | None:intergenic | 45.0% | |
| GATCCATGTTGGAGCTATGT+GGG | + | chr6_2:66257920-66257939 | None:intergenic | 45.0% | |
| ATACCTCTACTATCGAGGGA+TGG | + | chr6_2:66257942-66257961 | None:intergenic | 45.0% | |
| !! | GAGTTTCTAGTGCGGAAGTA+TGG | - | chr6_2:66258177-66258196 | Msa0924370:intron | 45.0% |
| CTGATACCGACATTGAGACA+CGG | - | chr6_2:66258464-66258483 | Msa0924370:intron | 45.0% | |
| GTAACACCGTGTCTCAATGT+CGG | + | chr6_2:66258473-66258492 | None:intergenic | 45.0% | |
| TGAGTGGAAGATCAAGGATC+TGG | - | chr6_2:66258623-66258642 | Msa0924370:intron | 45.0% | |
| CAAGGATCTGGCAAAAGATG+AGG | - | chr6_2:66258635-66258654 | Msa0924370:intron | 45.0% | |
| TCTGGCAAAAGATGAGGGAT+TGG | - | chr6_2:66258641-66258660 | Msa0924370:intron | 45.0% | |
| ! | AGGTTATTGATTGTAGCCGG+TGG | - | chr6_2:66258805-66258824 | Msa0924370:CDS | 45.0% |
| ! | TTATTGATTGTAGCCGGTGG+CGG | - | chr6_2:66258808-66258827 | Msa0924370:CDS | 45.0% |
| CTTTGCCAAGCAAAGTGAGA+AGG | + | chr6_2:66257321-66257340 | None:intergenic | 45.0% | |
| CTTCTCACTTTGCTTGGCAA+AGG | - | chr6_2:66257319-66257338 | Msa0924370:CDS | 45.0% | |
| !! | CTTTGCTTGGCAAAGGCATT+TGG | - | chr6_2:66257326-66257345 | Msa0924370:CDS | 45.0% |
| GAACATGACTGCTACCTCTT+TGG | - | chr6_2:66257358-66257377 | Msa0924370:CDS | 45.0% | |
| CTACCTCTTTGGATAGTAGC+AGG | - | chr6_2:66257369-66257388 | Msa0924370:CDS | 45.0% | |
| ACCTCTTTGGATAGTAGCAG+GGG | - | chr6_2:66257371-66257390 | Msa0924370:CDS | 45.0% | |
| CTCCACATGTACCTAAAGTC+TGG | + | chr6_2:66257402-66257421 | None:intergenic | 45.0% | |
| GATCCATGTTGGAGCTATGT+GGG | + | chr6_2:66257920-66257939 | None:intergenic | 45.0% | |
| ATACCTCTACTATCGAGGGA+TGG | + | chr6_2:66257942-66257961 | None:intergenic | 45.0% | |
| !! | GAGTTTCTAGTGCGGAAGTA+TGG | - | chr6_2:66258177-66258196 | Msa0924370:intron | 45.0% |
| CTGATACCGACATTGAGACA+CGG | - | chr6_2:66258464-66258483 | Msa0924370:intron | 45.0% | |
| GTAACACCGTGTCTCAATGT+CGG | + | chr6_2:66258473-66258492 | None:intergenic | 45.0% | |
| TGAGTGGAAGATCAAGGATC+TGG | - | chr6_2:66258623-66258642 | Msa0924370:intron | 45.0% | |
| CAAGGATCTGGCAAAAGATG+AGG | - | chr6_2:66258635-66258654 | Msa0924370:intron | 45.0% | |
| TCTGGCAAAAGATGAGGGAT+TGG | - | chr6_2:66258641-66258660 | Msa0924370:intron | 45.0% | |
| ! | AGGTTATTGATTGTAGCCGG+TGG | - | chr6_2:66258805-66258824 | Msa0924370:CDS | 45.0% |
| ! | TTATTGATTGTAGCCGGTGG+CGG | - | chr6_2:66258808-66258827 | Msa0924370:CDS | 45.0% |
| TCTTTGGATAGTAGCAGGGG+CGG | - | chr6_2:66257374-66257393 | Msa0924370:CDS | 50.0% | |
| AGTCCCACATAGCTCCAACA+TGG | - | chr6_2:66257914-66257933 | Msa0924370:intron | 50.0% | |
| GGATCCATGTTGGAGCTATG+TGG | + | chr6_2:66257921-66257940 | None:intergenic | 50.0% | |
| ATCGAGGGATGGATCCATGT+TGG | + | chr6_2:66257931-66257950 | None:intergenic | 50.0% | |
| GATCCATCCCTCGATAGTAG+AGG | - | chr6_2:66257936-66257955 | Msa0924370:intron | 50.0% | |
| TCTTTGGATAGTAGCAGGGG+CGG | - | chr6_2:66257374-66257393 | Msa0924370:CDS | 50.0% | |
| AGTCCCACATAGCTCCAACA+TGG | - | chr6_2:66257914-66257933 | Msa0924370:intron | 50.0% | |
| GGATCCATGTTGGAGCTATG+TGG | + | chr6_2:66257921-66257940 | None:intergenic | 50.0% | |
| ATCGAGGGATGGATCCATGT+TGG | + | chr6_2:66257931-66257950 | None:intergenic | 50.0% | |
| GATCCATCCCTCGATAGTAG+AGG | - | chr6_2:66257936-66257955 | Msa0924370:intron | 50.0% | |
| GCCCCTGCTACTATCCAAAG+AGG | + | chr6_2:66257375-66257394 | None:intergenic | 55.0% | |
| GCCCCTGCTACTATCCAAAG+AGG | + | chr6_2:66257375-66257394 | None:intergenic | 55.0% | |
| CAGGGGCGGATCCAGACTTT+AGG | - | chr6_2:66257388-66257407 | Msa0924370:CDS | 60.0% | |
| CAGGGGCGGATCCAGACTTT+AGG | - | chr6_2:66257388-66257407 | Msa0924370:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 66257248 | 66258836 | 66257248 | ID=Msa0924370;Name=Msa0924370 |
| chr6_2 | mRNA | 66257248 | 66258836 | 66257248 | ID=Msa0924370-mRNA-1;Parent=Msa0924370;Name=Msa0924370-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0|0|0.75|1|1|4|0|226 |
| chr6_2 | exon | 66258729 | 66258836 | 66258729 | ID=Msa0924370-mRNA-1:exon:10490;Parent=Msa0924370-mRNA-1 |
| chr6_2 | exon | 66258127 | 66258190 | 66258127 | ID=Msa0924370-mRNA-1:exon:10489;Parent=Msa0924370-mRNA-1 |
| chr6_2 | exon | 66257714 | 66257906 | 66257714 | ID=Msa0924370-mRNA-1:exon:10488;Parent=Msa0924370-mRNA-1 |
| chr6_2 | exon | 66257248 | 66257563 | 66257248 | ID=Msa0924370-mRNA-1:exon:10487;Parent=Msa0924370-mRNA-1 |
| chr6_2 | CDS | 66258729 | 66258836 | 66258729 | ID=Msa0924370-mRNA-1:cds;Parent=Msa0924370-mRNA-1 |
| chr6_2 | CDS | 66258127 | 66258190 | 66258127 | ID=Msa0924370-mRNA-1:cds;Parent=Msa0924370-mRNA-1 |
| chr6_2 | CDS | 66257714 | 66257906 | 66257714 | ID=Msa0924370-mRNA-1:cds;Parent=Msa0924370-mRNA-1 |
| chr6_2 | CDS | 66257248 | 66257563 | 66257248 | ID=Msa0924370-mRNA-1:cds;Parent=Msa0924370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
