AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0945490

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0945490 MtrunA17_Chr4g0033751 96.011 727 27 1 1 725 1 727 0.0 1424
Msa0945490 MtrunA17_Chr2g0329581 62.681 761 209 17 1 718 1 729 0.0 817
Msa0945490 MtrunA17_Chr6g0475401 63.025 119 44 0 1 119 1 119 8.89e-48 177
Msa0945490 MtrunA17_Chr6g0475401 35.833 120 60 3 608 712 412 529 3.08e-12 69.7
Msa0945490 MtrunA17_Chr5g0413621 57.025 121 51 1 1 120 1 121 1.52e-41 160
Msa0945490 MtrunA17_Chr4g0062781 56.667 120 52 0 1 120 1 120 3.61e-40 157
Msa0945490 MtrunA17_Chr2g0309091 31.680 363 196 13 369 711 254 584 7.57e-37 146
Msa0945490 MtrunA17_Chr2g0309091 46.825 126 61 2 1 124 1 122 1.33e-26 115
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0945490 AT1G08760.1 51.747 744 298 17 1 706 1 721 0.0 677
Msa0945490 AT3G14170.1 61.345 119 46 0 1 119 1 119 2.81e-45 170
Msa0945490 AT3G14170.1 35.338 133 69 3 594 712 374 503 4.95e-13 72.8
Msa0945490 AT3G14170.1 34.831 89 58 0 384 472 250 338 1.67e-12 70.9
Msa0945490 AT3G14170.2 61.345 119 46 0 1 119 1 119 2.94e-45 169
Msa0945490 AT3G14170.2 35.338 133 69 3 594 712 375 504 5.32e-13 72.4
Msa0945490 AT3G14170.2 34.831 89 58 0 384 472 251 339 1.82e-12 70.9
Msa0945490 AT4G13370.1 58.400 125 52 0 1 125 1 125 3.07e-42 164
Msa0945490 AT4G13370.1 28.135 327 160 6 382 707 413 665 2.24e-23 105
Msa0945490 AT1G23790.1 57.377 122 51 1 1 121 1 122 3.53e-41 158
Msa0945490 AT1G70340.1 57.500 120 50 1 1 119 1 120 1.27e-39 154
Msa0945490 AT3G19610.1 48.333 120 61 1 1 119 29 148 7.19e-36 144
Msa0945490 AT3G19610.1 27.108 332 174 9 390 709 335 610 2.26e-22 102
Msa0945490 AT2G31920.1 44.697 132 64 4 1 124 1 131 1.74e-25 112
Msa0945490 AT2G31920.1 27.300 337 191 11 376 708 284 570 2.43e-21 99.4

Find 161 sgRNAs with CRISPR-Local

Find 261 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGAGTTCTGATTATTTATT+TGG 0.095740 6_3:+24281501 Msa0945490:three_prime_UTR
CAAAATCAAAAGATTGTTCT+TGG 0.220021 6_3:+24280766 Msa0945490:CDS
TGAAACCTTGACAAAGTTTC+CGG 0.253676 6_3:-24279193 None:intergenic
GTTGTGATTCTTTCATTATC+TGG 0.256643 6_3:-24280595 None:intergenic
CCACTCCAAGAGTGGATTAA+AGG 0.275711 6_3:+24280952 Msa0945490:CDS
CTTACTGTGCTACGAAATTC+AGG 0.277895 6_3:-24278518 None:intergenic
CTTAGAAGATGCCCTTGATT+TGG 0.289921 6_3:-24278483 None:intergenic
ATAGTTTGCTACAATGTCTT+AGG 0.295406 6_3:+24279848 Msa0945490:CDS
TAGCTTAAGATGCATTATTA+TGG 0.310907 6_3:+24281376 Msa0945490:three_prime_UTR
AAATCATCCGCGCACTATTC+AGG 0.311812 6_3:-24280534 None:intergenic
CGTGGTGTTAGGCCTGTTCC+TGG 0.317826 6_3:+24277912 Msa0945490:CDS
GCATACAATAACTTTGTAAA+AGG 0.320237 6_3:-24281565 None:intergenic
GGAGTTCTGATTATTTATTT+GGG 0.327095 6_3:+24281502 Msa0945490:three_prime_UTR
TCTTCAGAAGCCGGACTTCC+CGG 0.331048 6_3:+24279174 Msa0945490:CDS
ATGGTGGCTTGGAGGAAATT+TGG 0.335560 6_3:+24281395 Msa0945490:three_prime_UTR
TAGCAATGCTTCTGAGGTTA+AGG 0.340241 6_3:+24277995 Msa0945490:CDS
TGATTCTCCAACACTTTCAT+TGG 0.340325 6_3:-24278050 None:intergenic
TTATTTCTTTAATTCAGATT+TGG 0.342020 6_3:+24277421 Msa0945490:five_prime_UTR
AGTTCCTTGTAAGGCTTGTT+TGG 0.347179 6_3:-24280875 None:intergenic
AAAATGGCAAATCTAGTTCC+TGG 0.348238 6_3:+24277612 Msa0945490:exon
TTACTCTCGTAATCTTTAGA+AGG 0.353943 6_3:-24279021 None:intergenic
CACTTTCATTGGAGAGGACT+TGG 0.357255 6_3:-24278039 None:intergenic
TCCACTCTTGGAGTGGTTGT+TGG 0.358763 6_3:-24280945 None:intergenic
TCAATCAGAAATTTAGTTCA+AGG 0.364637 6_3:+24278386 Msa0945490:CDS
TACTCTTCTAATACTCAAAT+GGG 0.368103 6_3:-24277561 None:intergenic
ACGAAGCAAAGGAACTCTTT+TGG 0.370193 6_3:+24279144 Msa0945490:CDS
GGAGATTTGTTTACAAATCA+AGG 0.381180 6_3:+24277741 Msa0945490:CDS
ATTAGATCATCATGTTCATC+AGG 0.391695 6_3:-24277813 None:intergenic
TTCCGATTCTTCGTGGTGTT+AGG 0.393778 6_3:+24277901 Msa0945490:CDS
CATTTCCTTTAATCCACTCT+TGG 0.393945 6_3:-24280957 None:intergenic
TTACTCTTCTAATACTCAAA+TGG 0.400158 6_3:-24277562 None:intergenic
GGATGAGAGATTGGTGGATA+AGG 0.407044 6_3:-24280680 None:intergenic
AACACCAACCAAGTCCTCTA+AGG 0.411554 6_3:+24279050 Msa0945490:CDS
CTTAGTGACAAGATTCAGTT+AGG 0.416620 6_3:+24277837 Msa0945490:CDS
GACAAAGTTTCCGGGAAGTC+CGG 0.419326 6_3:-24279184 None:intergenic
AGTTAACGGTGATGGAACTA+TGG 0.422657 6_3:+24279104 Msa0945490:CDS
GAATTACTTGTAGTTGAAAC+AGG 0.432215 6_3:-24280742 None:intergenic
GAGAATTTCTCAAAAGAAGT+AGG 0.433004 6_3:-24278236 None:intergenic
CTTCTGAGGTTAAGGTTAAG+AGG 0.436051 6_3:+24278003 Msa0945490:CDS
CCTTCATCTATTGCGAAGCT+TGG 0.438351 6_3:+24279264 Msa0945490:CDS
CTAAGGCGTTGCGGAAAAGC+TGG 0.438960 6_3:+24278423 Msa0945490:CDS
AACAGAAAAGGATGAGAGAT+TGG 0.439259 6_3:-24280689 None:intergenic
TGTTTGGAATTAGCTACTGC+TGG 0.443115 6_3:-24280859 None:intergenic
GAAACCTTGACAAAGTTTCC+GGG 0.443615 6_3:-24279192 None:intergenic
TTTGCGCGGAGTTCCTTGTA+AGG 0.448101 6_3:-24280884 None:intergenic
GGGGTGGTGGAGACGGGAAA+GGG 0.448470 6_3:+24278317 Msa0945490:CDS
TTAGTTGCAACAATATCTTC+AGG 0.451042 6_3:-24277957 None:intergenic
ATTCTGAGGGTTATGTTCCT+TGG 0.451057 6_3:-24280479 None:intergenic
ATAAAGAGACATCCAAATCA+AGG 0.456508 6_3:+24278471 Msa0945490:CDS
AAATCTATAAAGAAAGTTAA+CGG 0.457905 6_3:+24279090 Msa0945490:CDS
TGCAATTGCGATCGCGAGAC+TGG 0.462113 6_3:+24281013 Msa0945490:CDS
CTTCATCTATTGCGAAGCTT+GGG 0.468822 6_3:+24279265 Msa0945490:CDS
GGAAAGAAATCTTCAGAAGC+CGG 0.471468 6_3:+24279165 Msa0945490:CDS
GGCCTAACACCACGAAGAAT+CGG 0.472446 6_3:-24277903 None:intergenic
TTATCTGGAGATGAACCATC+TGG 0.472677 6_3:-24280580 None:intergenic
AACTTAAAAGCGTCAACGAT+TGG 0.476478 6_3:+24281121 Msa0945490:CDS
TCGCCTGTTCCGATTCTTCG+TGG 0.478185 6_3:+24277894 Msa0945490:CDS
CTAAATTAACCGCCGCATCA+AGG 0.478940 6_3:-24280981 None:intergenic
AGACTTCACATAATTGTCAA+TGG 0.480532 6_3:+24277107 None:intergenic
CAAGCATGTCTCCCAGGAAC+AGG 0.480995 6_3:-24277924 None:intergenic
AACTGATCAATTGTATTCTG+AGG 0.483206 6_3:-24280493 None:intergenic
CATCTATTGCGAAGCTTGGG+AGG 0.483470 6_3:+24279268 Msa0945490:CDS
TGTAGTTGAAACAGGAAGCT+TGG 0.485663 6_3:-24280734 None:intergenic
CTCTCGGTTATAAACAGAAA+AGG 0.486637 6_3:-24280701 None:intergenic
GATGCATTATTATGGTGGCT+TGG 0.489089 6_3:+24281384 Msa0945490:three_prime_UTR
GACGCTTCATTGAAAGCTCA+TGG 0.489464 6_3:+24280826 Msa0945490:CDS
TAGCAACTAGTAGGTGAAGA+AGG 0.490380 6_3:-24278206 None:intergenic
TCAAACAATGGTCAAATAGC+AGG 0.495685 6_3:+24281087 Msa0945490:CDS
GTTTGAGGTATAGACATAGT+TGG 0.496293 6_3:+24281481 Msa0945490:three_prime_UTR
CTCCAACACTTTCATTGGAG+AGG 0.497923 6_3:-24278045 None:intergenic
CCAAGCTTCGCAATAGATGA+AGG 0.500292 6_3:-24279264 None:intergenic
ATGATTGTGAGTCAGAAGTA+AGG 0.502497 6_3:-24281269 None:intergenic
GTTCGCGGAGTTAGTCCTCT+CGG 0.502784 6_3:+24278341 Msa0945490:CDS
TTCTGGTGTTCCAGACTCCT+AGG 0.504156 6_3:+24278974 Msa0945490:intron
TGACAGAAGCAAGTGTTCAA+TGG 0.504746 6_3:+24279232 Msa0945490:CDS
GGATAGGCTGATTGCTAAGG+TGG 0.505127 6_3:+24278295 Msa0945490:CDS
AAATCTCCACCTGCTAGTGC+TGG 0.505213 6_3:-24277726 None:intergenic
GGCAAAGAATAGCAACTAGT+AGG 0.507800 6_3:-24278215 None:intergenic
AAATGGCAAATCTAGTTCCT+GGG 0.508006 6_3:+24277613 Msa0945490:exon
CCTTTAATCCACTCTTGGAG+TGG 0.512337 6_3:-24280952 None:intergenic
CTAACTGAATCTTGTCACTA+AGG 0.514275 6_3:-24277836 None:intergenic
GCACAGAGATGCAGCACAGA+TGG 0.515070 6_3:+24279789 Msa0945490:CDS
TTAGTTCAAGGAATTGAACT+TGG 0.515121 6_3:+24278398 Msa0945490:CDS
TAAAAGCGTCAACGATTGGT+TGG 0.515601 6_3:+24281125 Msa0945490:CDS
AAGCAACAAGGAAATATCAA+TGG 0.517246 6_3:+24278269 Msa0945490:CDS
TCTTCCTTAGAGGACTTGGT+TGG 0.518185 6_3:-24279054 None:intergenic
ATAAAGAAAGTTAACGGTGA+TGG 0.518959 6_3:+24279096 Msa0945490:CDS
ACACCACGAAGAATCGGAAC+AGG 0.519947 6_3:-24277897 None:intergenic
ATAAATCCTACATGGGTTTG+AGG 0.521514 6_3:+24281466 Msa0945490:three_prime_UTR
AAGGTAGACTATGATAATCA+TGG 0.522596 6_3:-24277132 None:intergenic
TTGGACAGTGATGGAGACAT+TGG 0.524679 6_3:+24281060 Msa0945490:CDS
AATTCCAAACAAGCCTTACA+AGG 0.526341 6_3:+24280871 Msa0945490:CDS
GAGACGGGAAAGGGTGTTCG+CGG 0.527317 6_3:+24278326 Msa0945490:CDS
AGCATTGTTCCAGCACTAGC+AGG 0.527702 6_3:+24277717 Msa0945490:CDS
AGGAATTGAACTTGGTGCTA+AGG 0.528575 6_3:+24278406 Msa0945490:CDS
CTTAAGATGCATTATTATGG+TGG 0.529334 6_3:+24281379 Msa0945490:three_prime_UTR
AAGAAAAGACAACGAAGCAA+AGG 0.535441 6_3:+24279133 Msa0945490:CDS
AGTCTATCAATTGTCTCTAC+CGG 0.535694 6_3:-24281192 None:intergenic
TTCGCGGAGTTAGTCCTCTC+GGG 0.536295 6_3:+24278342 Msa0945490:CDS
CTCACAACTCAGTTGAACAA+TGG 0.537768 6_3:-24277494 None:intergenic
TCTATACCTCAAACCCATGT+AGG 0.541148 6_3:-24281472 None:intergenic
ACAAGTAGATAAGAAATCAA+TGG 0.541333 6_3:+24278079 Msa0945490:CDS
CAAGGAACTCCGCGCAAACA+AGG 0.543841 6_3:+24280889 Msa0945490:CDS
AACGATTGGTTGGATGAGAT+AGG 0.546451 6_3:+24281135 Msa0945490:CDS
CCTGGGAGACATGCTTGTGT+TGG 0.547891 6_3:+24277930 Msa0945490:CDS
GCATTATTATGGTGGCTTGG+AGG 0.549963 6_3:+24281387 Msa0945490:three_prime_UTR
ATGAACACAGACATAAAAGT+TGG 0.550757 6_3:+24277660 Msa0945490:CDS
GAAAAGCTGGGAAGGGAACA+TGG 0.551231 6_3:+24278436 Msa0945490:CDS
ACTGATCAATTGTATTCTGA+GGG 0.552570 6_3:-24280492 None:intergenic
GTGGTGTTAGGCCTGTTCCT+GGG 0.553445 6_3:+24277913 Msa0945490:CDS
ATTGTTGCAACTAACTCACT+TGG 0.554897 6_3:+24277966 Msa0945490:CDS
AGAAAAGGATGAGAGATTGG+TGG 0.555800 6_3:-24280686 None:intergenic
GAAATATCAATGGAGTGGAT+AGG 0.557954 6_3:+24278279 Msa0945490:CDS
GTCCTCTCCAATGAAAGTGT+TGG 0.558109 6_3:+24278043 Msa0945490:CDS
CTTTCTAAAACCATTCCAGA+TGG 0.563456 6_3:+24280565 Msa0945490:CDS
ACAGGAAGCTTGGACAATTG+AGG 0.563685 6_3:-24280724 None:intergenic
GCTTGGACAATTGAGGCTCT+CGG 0.566507 6_3:-24280717 None:intergenic
ATCTATTGCGAAGCTTGGGA+GGG 0.567095 6_3:+24279269 Msa0945490:CDS
GACATTGGTTTGTCAAACAA+TGG 0.568828 6_3:+24281075 Msa0945490:CDS
GAGTTCTGATTATTTATTTG+GGG 0.570661 6_3:+24281503 Msa0945490:three_prime_UTR
ATAGGCTGATTGCTAAGGTG+GGG 0.576897 6_3:+24278297 Msa0945490:CDS
AACTAGAAACTAGAAACTGA+TGG 0.578032 6_3:-24277448 None:intergenic
TAGGCTGATTGCTAAGGTGG+GGG 0.578325 6_3:+24278298 Msa0945490:CDS
TCCAACAACCACTCCAAGAG+TGG 0.580092 6_3:+24280944 Msa0945490:CDS
TGGAGATGAACCATCTGGAA+TGG 0.580483 6_3:-24280575 None:intergenic
TTTGTACATAAATCCTACAT+GGG 0.580524 6_3:+24281459 Msa0945490:three_prime_UTR
GATTGGTGGATAAGGCAGCT+TGG 0.581530 6_3:-24280672 None:intergenic
CTCGGGAAGAGAATTGCAGT+TGG 0.583302 6_3:+24278359 Msa0945490:CDS
CCAACACAAGCATGTCTCCC+AGG 0.583666 6_3:-24277930 None:intergenic
AACAATAAATGTGAAATGTG+AGG 0.588377 6_3:+24281527 Msa0945490:three_prime_UTR
TAGAGACAATTGATAGACTC+AGG 0.589019 6_3:+24281196 Msa0945490:CDS
AACTTGGTGCTAAGGCGTTG+CGG 0.593967 6_3:+24278414 Msa0945490:CDS
TAAAGAGACATCCAAATCAA+GGG 0.597215 6_3:+24278472 Msa0945490:CDS
ACAAGGAAATATCAATGGAG+TGG 0.598845 6_3:+24278274 Msa0945490:CDS
AACACAGACATAAAAGTTGG+TGG 0.601218 6_3:+24277663 Msa0945490:CDS
GCGTTGCGGAAAAGCTGGGA+AGG 0.605950 6_3:+24278428 Msa0945490:CDS
CTCACCATTCTAAAAGCACA+AGG 0.606009 6_3:-24277151 None:intergenic
AGCAACTGAGGCTATGCAAG+AGG 0.606268 6_3:+24279813 Msa0945490:CDS
TGATTGTGAGTCAGAAGTAA+GGG 0.607233 6_3:-24281268 None:intergenic
ATTAACTTTAGTAGCACCCC+AGG 0.608080 6_3:-24277630 None:intergenic
AGGAAATGACCTTGATGCGG+CGG 0.609502 6_3:+24280972 Msa0945490:CDS
CGATCGCAATTGCAGCATGT+CGG 0.611032 6_3:-24281004 None:intergenic
CTCAGTTGAACAATGGACAA+TGG 0.611304 6_3:-24277487 None:intergenic
ATTGCATCACCTTGTTTGCG+CGG 0.616347 6_3:-24280898 None:intergenic
TCACAATCATCAGAGATCAA+AGG 0.618878 6_3:+24281282 Msa0945490:CDS
AGCACAGATGGCAGCAACTG+AGG 0.619137 6_3:+24279801 Msa0945490:CDS
ACTTCCCGGAAACTTTGTCA+AGG 0.621117 6_3:+24279188 Msa0945490:CDS
TAAGGCGTTGCGGAAAAGCT+GGG 0.622391 6_3:+24278424 Msa0945490:CDS
GATAGGCTGATTGCTAAGGT+GGG 0.622398 6_3:+24278296 Msa0945490:CDS
CAAGCTTCGCAATAGATGAA+GGG 0.632626 6_3:-24279263 None:intergenic
ACTCTTCTAATACTCAAATG+GGG 0.638325 6_3:-24277560 None:intergenic
CGTTGCGGAAAAGCTGGGAA+GGG 0.647668 6_3:+24278429 Msa0945490:CDS
AGAGCTAAGTAATTCTGCCA+AGG 0.648404 6_3:+24280462 Msa0945490:CDS
AGTGGATAGGCTGATTGCTA+AGG 0.655516 6_3:+24278292 Msa0945490:CDS
TCTAATGGAGTTAAGCAACA+AGG 0.656865 6_3:+24278257 Msa0945490:CDS
AATGGCAAATCTAGTTCCTG+GGG 0.665627 6_3:+24277614 Msa0945490:exon
TTAGATCATCATGTTCATCA+GGG 0.666720 6_3:-24277812 None:intergenic
TAAAGGAAATGACCTTGATG+CGG 0.678002 6_3:+24280969 Msa0945490:CDS
ACACTAGCCTGAATAGTGCG+CGG 0.681954 6_3:+24280527 Msa0945490:CDS
ATTGTTCCAGCACTAGCAGG+TGG 0.697945 6_3:+24277720 Msa0945490:CDS
ACTGCAATTCTCTTCCCGAG+AGG 0.722826 6_3:-24278356 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGAATTTTGTTTTTTTTTTT+TGG - chr6_3:24281424-24281443 None:intergenic 10.0%
!! AAGAAAAGAAAAAGTAAATT+TGG - chr6_3:24277316-24277335 None:intergenic 15.0%
!!! TTATTTCTTTAATTCAGATT+TGG + chr6_3:24277421-24277440 Msa0945490:five_prime_UTR 15.0%
!! TAAAATAAGTAAATACAAAC+AGG - chr6_3:24278561-24278580 None:intergenic 15.0%
!! AAATCTATAAAGAAAGTTAA+CGG + chr6_3:24279090-24279109 Msa0945490:CDS 15.0%
!! ATTTATGTACAAAAAAAAAG+TGG - chr6_3:24281452-24281471 None:intergenic 15.0%
!!! AATGAAGAGATTTTATACTA+TGG - chr6_3:24277225-24277244 None:intergenic 20.0%
!!! AATTTTGATCTATACAATTG+TGG + chr6_3:24277377-24277396 Msa0945490:five_prime_UTR 20.0%
!! AGTAAGTTTATTCACAATTT+AGG + chr6_3:24278535-24278554 Msa0945490:intron 20.0%
!! CATACAACATTCATATTATT+AGG + chr6_3:24279597-24279616 Msa0945490:intron 20.0%
!! TTTATTAGTAATGCATATCT+TGG - chr6_3:24279970-24279989 None:intergenic 20.0%
!! AAGATATGCATTACTAATAA+AGG + chr6_3:24279969-24279988 Msa0945490:intron 20.0%
!! AAGTATCAACATTATATCTT+CGG - chr6_3:24280074-24280093 None:intergenic 20.0%
!! TATTGTAATCTAATCAATGT+AGG + chr6_3:24280171-24280190 Msa0945490:intron 20.0%
!!! TTTTTTAAAGAAATTGGGTA+AGG - chr6_3:24280342-24280361 None:intergenic 20.0%
!!! ATTGTTTGTTGAGAAATTTT+TGG + chr6_3:24281041-24281060 Msa0945490:CDS 20.0%
!! ACTATGGTTTTTGTATTAGT+GGG - chr6_3:24277209-24277228 None:intergenic 25.0%
!! TACTATGGTTTTTGTATTAG+TGG - chr6_3:24277210-24277229 None:intergenic 25.0%
! TACTCTTCTAATACTCAAAT+GGG - chr6_3:24277564-24277583 None:intergenic 25.0%
! TTACTCTTCTAATACTCAAA+TGG - chr6_3:24277565-24277584 None:intergenic 25.0%
!! AAATCAAGGCTTTTATGTTA+AGG + chr6_3:24277755-24277774 Msa0945490:CDS 25.0%
! ACAAGTAGATAAGAAATCAA+TGG + chr6_3:24278079-24278098 Msa0945490:CDS 25.0%
!! GATAAGAAATCAATGGTTTT+AGG + chr6_3:24278086-24278105 Msa0945490:CDS 25.0%
!!! TCTTTTGAGAAATTCTCTAA+TGG + chr6_3:24278242-24278261 Msa0945490:CDS 25.0%
!! TCAATCAGAAATTTAGTTCA+AGG + chr6_3:24278386-24278405 Msa0945490:CDS 25.0%
! TATAAGAAGTGATTATGCAT+AGG - chr6_3:24278730-24278749 None:intergenic 25.0%
!! TTTTAACAAGATTCACTTTC+TGG + chr6_3:24278957-24278976 Msa0945490:intron 25.0%
! TAGTTGTATCATTAGTTAGT+TGG + chr6_3:24279343-24279362 Msa0945490:intron 25.0%
!! AGCATTAAATACTTTTGTTG+GGG - chr6_3:24279392-24279411 None:intergenic 25.0%
!! GAGCATTAAATACTTTTGTT+GGG - chr6_3:24279393-24279412 None:intergenic 25.0%
! GTATACAACATTCATATTGT+TGG + chr6_3:24279629-24279648 Msa0945490:intron 25.0%
! CATAAACCTTAAGTCAATAA+CGG - chr6_3:24279656-24279675 None:intergenic 25.0%
! TAATGAATAATGAATCCAGT+AGG - chr6_3:24279693-24279712 None:intergenic 25.0%
!!! TTTTTTTTTCACATCTTGAC+AGG + chr6_3:24279756-24279775 Msa0945490:intron 25.0%
!! TTAAAACAAATCACCTTTTG+TGG + chr6_3:24280016-24280035 Msa0945490:intron 25.0%
!!! ATTTTTTGCATATCCACAAA+AGG - chr6_3:24280032-24280051 None:intergenic 25.0%
!!! AGACGATTTTAAGTTGTTTA+TGG + chr6_3:24280129-24280148 Msa0945490:intron 25.0%
! TGAAACATATAGTGAAATTC+AGG + chr6_3:24280202-24280221 Msa0945490:intron 25.0%
!! AAGATATTTCTGACACTATT+TGG + chr6_3:24280416-24280435 Msa0945490:intron 25.0%
! CAAAATCAAAAGATTGTTCT+TGG + chr6_3:24280766-24280785 Msa0945490:CDS 25.0%
! TAGCTTAAGATGCATTATTA+TGG + chr6_3:24281376-24281395 Msa0945490:three_prime_UTR 25.0%
!! TTTTGTACATAAATCCTACA+TGG + chr6_3:24281458-24281477 Msa0945490:three_prime_UTR 25.0%
! TTTGTACATAAATCCTACAT+GGG + chr6_3:24281459-24281478 Msa0945490:three_prime_UTR 25.0%
!! TGGAGTTCTGATTATTTATT+TGG + chr6_3:24281501-24281520 Msa0945490:three_prime_UTR 25.0%
!! GGAGTTCTGATTATTTATTT+GGG + chr6_3:24281502-24281521 Msa0945490:three_prime_UTR 25.0%
!! GAGTTCTGATTATTTATTTG+GGG + chr6_3:24281503-24281522 Msa0945490:three_prime_UTR 25.0%
! AACAATAAATGTGAAATGTG+AGG + chr6_3:24281527-24281546 Msa0945490:three_prime_UTR 25.0%
! GCATACAATAACTTTGTAAA+AGG - chr6_3:24281568-24281587 None:intergenic 25.0%
AAGGTAGACTATGATAATCA+TGG - chr6_3:24277135-24277154 None:intergenic 30.0%
AACTAGAAACTAGAAACTGA+TGG - chr6_3:24277451-24277470 None:intergenic 30.0%
ACTCTTCTAATACTCAAATG+GGG - chr6_3:24277563-24277582 None:intergenic 30.0%
!!! TTTGCCATTTTTTGTTGCTT+TGG - chr6_3:24277603-24277622 None:intergenic 30.0%
ATGAACACAGACATAAAAGT+TGG + chr6_3:24277660-24277679 Msa0945490:CDS 30.0%
! GGAGATTTGTTTACAAATCA+AGG + chr6_3:24277741-24277760 Msa0945490:CDS 30.0%
TTAGATCATCATGTTCATCA+GGG - chr6_3:24277815-24277834 None:intergenic 30.0%
ATTAGATCATCATGTTCATC+AGG - chr6_3:24277816-24277835 None:intergenic 30.0%
TTAGTTGCAACAATATCTTC+AGG - chr6_3:24277960-24277979 None:intergenic 30.0%
!!! TGTTGTTGATTTTGTGAAGA+AGG + chr6_3:24278139-24278158 Msa0945490:CDS 30.0%
GAGAATTTCTCAAAAGAAGT+AGG - chr6_3:24278239-24278258 None:intergenic 30.0%
AAGCAACAAGGAAATATCAA+TGG + chr6_3:24278269-24278288 Msa0945490:CDS 30.0%
TTAGTTCAAGGAATTGAACT+TGG + chr6_3:24278398-24278417 Msa0945490:CDS 30.0%
ATAAAGAGACATCCAAATCA+AGG + chr6_3:24278471-24278490 Msa0945490:CDS 30.0%
TAAAGAGACATCCAAATCAA+GGG + chr6_3:24278472-24278491 Msa0945490:CDS 30.0%
!! CTTATTTCTATAAGCACTCT+AGG + chr6_3:24278666-24278685 Msa0945490:intron 30.0%
! ATTATGCATAGGCTATTTCA+TGG - chr6_3:24278719-24278738 None:intergenic 30.0%
CTTAATTGATACGTTTATCC+AGG + chr6_3:24278792-24278811 Msa0945490:intron 30.0%
TCAAAGTTGTTCAAAAAGAC+AGG - chr6_3:24278818-24278837 None:intergenic 30.0%
AAACAAAGAAAAGTCCAACA+AGG - chr6_3:24278856-24278875 None:intergenic 30.0%
TTACTCTCGTAATCTTTAGA+AGG - chr6_3:24279024-24279043 None:intergenic 30.0%
!!! AATCTTGTTTTCTTCCTTAG+AGG - chr6_3:24279067-24279086 None:intergenic 30.0%
ATAAAGAAAGTTAACGGTGA+TGG + chr6_3:24279096-24279115 Msa0945490:CDS 30.0%
AAGCTGAAACTGCAAAAATA+AGG - chr6_3:24279314-24279333 None:intergenic 30.0%
! CGAGCATTAAATACTTTTGT+TGG - chr6_3:24279394-24279413 None:intergenic 30.0%
!!! CATTGCCATGTTTTTTAACT+CGG + chr6_3:24279457-24279476 Msa0945490:intron 30.0%
CTTAACCGAGTTAAAAAACA+TGG - chr6_3:24279465-24279484 None:intergenic 30.0%
! GCATGACAATTGATTCAAAT+GGG - chr6_3:24279547-24279566 None:intergenic 30.0%
! TGCATGACAATTGATTCAAA+TGG - chr6_3:24279548-24279567 None:intergenic 30.0%
!! ATAGTTTGCTACAATGTCTT+AGG + chr6_3:24279848-24279867 Msa0945490:CDS 30.0%
GATCTTTGTGTTTCTTAATC+TGG + chr6_3:24279895-24279914 Msa0945490:intron 30.0%
! TCTTAATCTGGTTGAGATTT+TGG + chr6_3:24279907-24279926 Msa0945490:intron 30.0%
CAACATTATATCTTCGGTAT+CGG - chr6_3:24280068-24280087 None:intergenic 30.0%
CTTATCATTGATGAAACATG+TGG + chr6_3:24280091-24280110 Msa0945490:intron 30.0%
AATTCAAACTCTGTCTCTTT+AGG - chr6_3:24280261-24280280 None:intergenic 30.0%
GGAAGATGTTTAAACATCTA+AGG - chr6_3:24280383-24280402 None:intergenic 30.0%
ACTGATCAATTGTATTCTGA+GGG - chr6_3:24280495-24280514 None:intergenic 30.0%
AACTGATCAATTGTATTCTG+AGG - chr6_3:24280496-24280515 None:intergenic 30.0%
!!! ATCTGGAATGGTTTTAGAAA+GGG - chr6_3:24280566-24280585 None:intergenic 30.0%
GTTGTGATTCTTTCATTATC+TGG - chr6_3:24280598-24280617 None:intergenic 30.0%
GAATTACTTGTAGTTGAAAC+AGG - chr6_3:24280745-24280764 None:intergenic 30.0%
!! GAATTTTCGAGGACTAAAAT+TGG - chr6_3:24280799-24280818 None:intergenic 30.0%
ATAGGATCGAGTAAAAATGA+GGG + chr6_3:24281153-24281172 Msa0945490:CDS 30.0%
CTTAAGATGCATTATTATGG+TGG + chr6_3:24281379-24281398 Msa0945490:three_prime_UTR 30.0%
!! TCTACCTTGTGCTTTTAGAA+TGG + chr6_3:24277147-24277166 Msa0945490:five_prime_UTR 35.0%
! ATGGTTTTTGTATTAGTGGG+TGG - chr6_3:24277206-24277225 None:intergenic 35.0%
!!! CCATTTTTTGTTGCTTTGGT+AGG - chr6_3:24277599-24277618 None:intergenic 35.0%
CCTACCAAAGCAACAAAAAA+TGG + chr6_3:24277596-24277615 Msa0945490:exon 35.0%
! AAAATGGCAAATCTAGTTCC+TGG + chr6_3:24277612-24277631 Msa0945490:exon 35.0%
! AAATGGCAAATCTAGTTCCT+GGG + chr6_3:24277613-24277632 Msa0945490:exon 35.0%
AACACAGACATAAAAGTTGG+TGG + chr6_3:24277663-24277682 Msa0945490:CDS 35.0%
CTAACTGAATCTTGTCACTA+AGG - chr6_3:24277839-24277858 None:intergenic 35.0%
CTTAGTGACAAGATTCAGTT+AGG + chr6_3:24277837-24277856 Msa0945490:CDS 35.0%
!!! GCCAGTTTGTTTTTGTTGAT+CGG + chr6_3:24277859-24277878 Msa0945490:CDS 35.0%
ACCGATCAACAAAAACAAAC+TGG - chr6_3:24277863-24277882 None:intergenic 35.0%
ATTGTTGCAACTAACTCACT+TGG + chr6_3:24277966-24277985 Msa0945490:CDS 35.0%
! TTTTCTTAGCAATGCTTCTG+AGG + chr6_3:24277989-24278008 Msa0945490:CDS 35.0%
TGATTCTCCAACACTTTCAT+TGG - chr6_3:24278053-24278072 None:intergenic 35.0%
TCTAATGGAGTTAAGCAACA+AGG + chr6_3:24278257-24278276 Msa0945490:CDS 35.0%
ACAAGGAAATATCAATGGAG+TGG + chr6_3:24278274-24278293 Msa0945490:CDS 35.0%
GAAATATCAATGGAGTGGAT+AGG + chr6_3:24278279-24278298 Msa0945490:CDS 35.0%
AAGAAAAGACAACGAAGCAA+AGG + chr6_3:24279133-24279152 Msa0945490:CDS 35.0%
TGAAACCTTGACAAAGTTTC+CGG - chr6_3:24279196-24279215 None:intergenic 35.0%
! GAGTTTGAGATAATACCTAC+TGG + chr6_3:24279675-24279694 Msa0945490:intron 35.0%
! CTCTGTCTCTTTAGGTTATA+AGG - chr6_3:24280253-24280272 None:intergenic 35.0%
AGTTTGAATTTCCTCAGGAA+CGG + chr6_3:24280271-24280290 Msa0945490:intron 35.0%
GTCAGAAATATCTTGAGTAG+TGG - chr6_3:24280410-24280429 None:intergenic 35.0%
!!! CATCTGGAATGGTTTTAGAA+AGG - chr6_3:24280567-24280586 None:intergenic 35.0%
!! CTTTCTAAAACCATTCCAGA+TGG + chr6_3:24280565-24280584 Msa0945490:CDS 35.0%
ACAAAAACTTGCAGCTTCTT+GGG + chr6_3:24280648-24280667 Msa0945490:CDS 35.0%
AACAGAAAAGGATGAGAGAT+TGG - chr6_3:24280692-24280711 None:intergenic 35.0%
CTCTCGGTTATAAACAGAAA+AGG - chr6_3:24280704-24280723 None:intergenic 35.0%
AATTCCAAACAAGCCTTACA+AGG + chr6_3:24280871-24280890 Msa0945490:CDS 35.0%
!!! TGTTGGACTAGTTGCTTTTT+TGG - chr6_3:24280931-24280950 None:intergenic 35.0%
CATTTCCTTTAATCCACTCT+TGG - chr6_3:24280960-24280979 None:intergenic 35.0%
TAAAGGAAATGACCTTGATG+CGG + chr6_3:24280969-24280988 Msa0945490:CDS 35.0%
!! GAGAAATTTTTGGACAGTGA+TGG + chr6_3:24281051-24281070 Msa0945490:CDS 35.0%
!! GACATTGGTTTGTCAAACAA+TGG + chr6_3:24281075-24281094 Msa0945490:CDS 35.0%
TCAAACAATGGTCAAATAGC+AGG + chr6_3:24281087-24281106 Msa0945490:CDS 35.0%
!! AACTTAAAAGCGTCAACGAT+TGG + chr6_3:24281121-24281140 Msa0945490:CDS 35.0%
GATAGGATCGAGTAAAAATG+AGG + chr6_3:24281152-24281171 Msa0945490:CDS 35.0%
TAGGATCGAGTAAAAATGAG+GGG + chr6_3:24281154-24281173 Msa0945490:CDS 35.0%
AGTCTATCAATTGTCTCTAC+CGG - chr6_3:24281195-24281214 None:intergenic 35.0%
TAGAGACAATTGATAGACTC+AGG + chr6_3:24281196-24281215 Msa0945490:CDS 35.0%
TGATTGTGAGTCAGAAGTAA+GGG - chr6_3:24281271-24281290 None:intergenic 35.0%
ATGATTGTGAGTCAGAAGTA+AGG - chr6_3:24281272-24281291 None:intergenic 35.0%
TCACAATCATCAGAGATCAA+AGG + chr6_3:24281282-24281301 Msa0945490:CDS 35.0%
ATAAATCCTACATGGGTTTG+AGG + chr6_3:24281466-24281485 Msa0945490:three_prime_UTR 35.0%
! GTTTGAGGTATAGACATAGT+TGG + chr6_3:24281481-24281500 Msa0945490:three_prime_UTR 35.0%
! CTCACCATTCTAAAAGCACA+AGG - chr6_3:24277154-24277173 None:intergenic 40.0%
CTCAGTTGAACAATGGACAA+TGG - chr6_3:24277490-24277509 None:intergenic 40.0%
CTCACAACTCAGTTGAACAA+TGG - chr6_3:24277497-24277516 None:intergenic 40.0%
! AATGGCAAATCTAGTTCCTG+GGG + chr6_3:24277614-24277633 Msa0945490:exon 40.0%
ATTAACTTTAGTAGCACCCC+AGG - chr6_3:24277633-24277652 None:intergenic 40.0%
!! TAGCAATGCTTCTGAGGTTA+AGG + chr6_3:24277995-24278014 Msa0945490:CDS 40.0%
!! CTTCTGAGGTTAAGGTTAAG+AGG + chr6_3:24278003-24278022 Msa0945490:CDS 40.0%
TAGCAACTAGTAGGTGAAGA+AGG - chr6_3:24278209-24278228 None:intergenic 40.0%
GGCAAAGAATAGCAACTAGT+AGG - chr6_3:24278218-24278237 None:intergenic 40.0%
!! AGGAATTGAACTTGGTGCTA+AGG + chr6_3:24278406-24278425 Msa0945490:CDS 40.0%
CTTAGAAGATGCCCTTGATT+TGG - chr6_3:24278486-24278505 None:intergenic 40.0%
CTTACTGTGCTACGAAATTC+AGG - chr6_3:24278521-24278540 None:intergenic 40.0%
TAAGCACTTGTGAGACAGTT+TGG + chr6_3:24278596-24278615 Msa0945490:intron 40.0%
AGACAGTTTGGTAGAGCTTA+TGG + chr6_3:24278608-24278627 Msa0945490:intron 40.0%
AAGAAAAGTCCAACAAGGTC+TGG - chr6_3:24278851-24278870 None:intergenic 40.0%
! ATGTACTTTTCCTAGGAGTC+TGG - chr6_3:24278987-24279006 None:intergenic 40.0%
! TCACTCGATGTACTTTTCCT+AGG - chr6_3:24278994-24279013 None:intergenic 40.0%
! GTTTTCTTCCTTAGAGGACT+TGG - chr6_3:24279061-24279080 None:intergenic 40.0%
!! AGTTAACGGTGATGGAACTA+TGG + chr6_3:24279104-24279123 Msa0945490:CDS 40.0%
! ACGAAGCAAAGGAACTCTTT+TGG + chr6_3:24279144-24279163 Msa0945490:CDS 40.0%
GGAAAGAAATCTTCAGAAGC+CGG + chr6_3:24279165-24279184 Msa0945490:CDS 40.0%
GAAACCTTGACAAAGTTTCC+GGG - chr6_3:24279195-24279214 None:intergenic 40.0%
TGACAGAAGCAAGTGTTCAA+TGG + chr6_3:24279232-24279251 Msa0945490:CDS 40.0%
CAAGCTTCGCAATAGATGAA+GGG - chr6_3:24279266-24279285 None:intergenic 40.0%
CTTCATCTATTGCGAAGCTT+GGG + chr6_3:24279265-24279284 Msa0945490:CDS 40.0%
GTCATAACAGACAGGATCTT+TGG - chr6_3:24279502-24279521 None:intergenic 40.0%
GATGATGAGTCATAACAGAC+AGG - chr6_3:24279510-24279529 None:intergenic 40.0%
!! GTTGGACCGTTATTGACTTA+AGG + chr6_3:24279647-24279666 Msa0945490:intron 40.0%
GACAGAGTTTGAATTTCCTC+AGG + chr6_3:24280266-24280285 Msa0945490:intron 40.0%
AATATCTTGAGTAGTGGCAG+AGG - chr6_3:24280404-24280423 None:intergenic 40.0%
AGAGCTAAGTAATTCTGCCA+AGG + chr6_3:24280462-24280481 Msa0945490:CDS 40.0%
! ATTCTGAGGGTTATGTTCCT+TGG - chr6_3:24280482-24280501 None:intergenic 40.0%
TTATCTGGAGATGAACCATC+TGG - chr6_3:24280583-24280602 None:intergenic 40.0%
GACAAAAACTTGCAGCTTCT+TGG + chr6_3:24280647-24280666 Msa0945490:CDS 40.0%
AGAAAAGGATGAGAGATTGG+TGG - chr6_3:24280689-24280708 None:intergenic 40.0%
TGTAGTTGAAACAGGAAGCT+TGG - chr6_3:24280737-24280756 None:intergenic 40.0%
! CGTCTTCTCTTGAATTTTCG+AGG - chr6_3:24280810-24280829 None:intergenic 40.0%
! TGTTTGGAATTAGCTACTGC+TGG - chr6_3:24280862-24280881 None:intergenic 40.0%
! AGTTCCTTGTAAGGCTTGTT+TGG - chr6_3:24280878-24280897 None:intergenic 40.0%
!! TAAAAGCGTCAACGATTGGT+TGG + chr6_3:24281125-24281144 Msa0945490:CDS 40.0%
! AACGATTGGTTGGATGAGAT+AGG + chr6_3:24281135-24281154 Msa0945490:CDS 40.0%
AGGATCGAGTAAAAATGAGG+GGG + chr6_3:24281155-24281174 Msa0945490:CDS 40.0%
GATGCATTATTATGGTGGCT+TGG + chr6_3:24281384-24281403 Msa0945490:three_prime_UTR 40.0%
TCTATACCTCAAACCCATGT+AGG - chr6_3:24281475-24281494 None:intergenic 40.0%
TTCCGATTCTTCGTGGTGTT+AGG + chr6_3:24277901-24277920 Msa0945490:CDS 45.0%
CACTTTCATTGGAGAGGACT+TGG - chr6_3:24278042-24278061 None:intergenic 45.0%
! GTCCTCTCCAATGAAAGTGT+TGG + chr6_3:24278043-24278062 Msa0945490:CDS 45.0%
CTCCAACACTTTCATTGGAG+AGG - chr6_3:24278048-24278067 None:intergenic 45.0%
AGTGGATAGGCTGATTGCTA+AGG + chr6_3:24278292-24278311 Msa0945490:CDS 45.0%
GATAGGCTGATTGCTAAGGT+GGG + chr6_3:24278296-24278315 Msa0945490:CDS 45.0%
ATAGGCTGATTGCTAAGGTG+GGG + chr6_3:24278297-24278316 Msa0945490:CDS 45.0%
GTTGTTCAAAAAGACAGGCC+TGG - chr6_3:24278813-24278832 None:intergenic 45.0%
TGTCAAACACCAGACCTTGT+TGG + chr6_3:24278839-24278858 Msa0945490:intron 45.0%
AACACCAACCAAGTCCTCTA+AGG + chr6_3:24279050-24279069 Msa0945490:CDS 45.0%
! TCTTCCTTAGAGGACTTGGT+TGG - chr6_3:24279057-24279076 None:intergenic 45.0%
ACTTCCCGGAAACTTTGTCA+AGG + chr6_3:24279188-24279207 Msa0945490:CDS 45.0%
CCAAGCTTCGCAATAGATGA+AGG - chr6_3:24279267-24279286 None:intergenic 45.0%
CCTTCATCTATTGCGAAGCT+TGG + chr6_3:24279264-24279283 Msa0945490:CDS 45.0%
ATCTATTGCGAAGCTTGGGA+GGG + chr6_3:24279269-24279288 Msa0945490:CDS 45.0%
AGGTCAGACTCTTACTACTG+AGG - chr6_3:24280233-24280252 None:intergenic 45.0%
! CCATTTTACAACCGTTCCTG+AGG - chr6_3:24280285-24280304 None:intergenic 45.0%
CCTCAGGAACGGTTGTAAAA+TGG + chr6_3:24280282-24280301 Msa0945490:intron 45.0%
AAATCATCCGCGCACTATTC+AGG - chr6_3:24280537-24280556 None:intergenic 45.0%
TGGAGATGAACCATCTGGAA+TGG - chr6_3:24280578-24280597 None:intergenic 45.0%
! GGATGAGAGATTGGTGGATA+AGG - chr6_3:24280683-24280702 None:intergenic 45.0%
ACAGGAAGCTTGGACAATTG+AGG - chr6_3:24280727-24280746 None:intergenic 45.0%
GACGCTTCATTGAAAGCTCA+TGG + chr6_3:24280826-24280845 Msa0945490:CDS 45.0%
! ATTGCATCACCTTGTTTGCG+CGG - chr6_3:24280901-24280920 None:intergenic 45.0%
CCTTTAATCCACTCTTGGAG+TGG - chr6_3:24280955-24280974 None:intergenic 45.0%
!! CCACTCCAAGAGTGGATTAA+AGG + chr6_3:24280952-24280971 Msa0945490:CDS 45.0%
CTAAATTAACCGCCGCATCA+AGG - chr6_3:24280984-24281003 None:intergenic 45.0%
! TTGGACAGTGATGGAGACAT+TGG + chr6_3:24281060-24281079 Msa0945490:CDS 45.0%
! GCATTATTATGGTGGCTTGG+AGG + chr6_3:24281387-24281406 Msa0945490:three_prime_UTR 45.0%
! ATGGTGGCTTGGAGGAAATT+TGG + chr6_3:24281395-24281414 Msa0945490:three_prime_UTR 45.0%
!!! ATATTTTTTTTAAAGAAATT+GGG - chr6_3:24280347-24280366 None:intergenic 5.0%
!!! TATATTTTTTTTAAAGAAAT+TGG - chr6_3:24280348-24280367 None:intergenic 5.0%
AGCATTGTTCCAGCACTAGC+AGG + chr6_3:24277717-24277736 Msa0945490:CDS 50.0%
ATTGTTCCAGCACTAGCAGG+TGG + chr6_3:24277720-24277739 Msa0945490:CDS 50.0%
AAATCTCCACCTGCTAGTGC+TGG - chr6_3:24277729-24277748 None:intergenic 50.0%
ACACCACGAAGAATCGGAAC+AGG - chr6_3:24277900-24277919 None:intergenic 50.0%
GGCCTAACACCACGAAGAAT+CGG - chr6_3:24277906-24277925 None:intergenic 50.0%
GGATAGGCTGATTGCTAAGG+TGG + chr6_3:24278295-24278314 Msa0945490:CDS 50.0%
TAGGCTGATTGCTAAGGTGG+GGG + chr6_3:24278298-24278317 Msa0945490:CDS 50.0%
ACTGCAATTCTCTTCCCGAG+AGG - chr6_3:24278359-24278378 None:intergenic 50.0%
CTCGGGAAGAGAATTGCAGT+TGG + chr6_3:24278359-24278378 Msa0945490:CDS 50.0%
!! AACTTGGTGCTAAGGCGTTG+CGG + chr6_3:24278414-24278433 Msa0945490:CDS 50.0%
!! TAAGGCGTTGCGGAAAAGCT+GGG + chr6_3:24278424-24278443 Msa0945490:CDS 50.0%
GAAAAGCTGGGAAGGGAACA+TGG + chr6_3:24278436-24278455 Msa0945490:CDS 50.0%
TTCTGGTGTTCCAGACTCCT+AGG + chr6_3:24278974-24278993 Msa0945490:intron 50.0%
GACAAAGTTTCCGGGAAGTC+CGG - chr6_3:24279187-24279206 None:intergenic 50.0%
CATCTATTGCGAAGCTTGGG+AGG + chr6_3:24279268-24279287 Msa0945490:CDS 50.0%
AGCAACTGAGGCTATGCAAG+AGG + chr6_3:24279813-24279832 Msa0945490:CDS 50.0%
! ACACTAGCCTGAATAGTGCG+CGG + chr6_3:24280527-24280546 Msa0945490:CDS 50.0%
! GATTGGTGGATAAGGCAGCT+TGG - chr6_3:24280675-24280694 None:intergenic 50.0%
GCTTGGACAATTGAGGCTCT+CGG - chr6_3:24280720-24280739 None:intergenic 50.0%
TTTGCGCGGAGTTCCTTGTA+AGG - chr6_3:24280887-24280906 None:intergenic 50.0%
TCCAACAACCACTCCAAGAG+TGG + chr6_3:24280944-24280963 Msa0945490:CDS 50.0%
TCCACTCTTGGAGTGGTTGT+TGG - chr6_3:24280948-24280967 None:intergenic 50.0%
AGGAAATGACCTTGATGCGG+CGG + chr6_3:24280972-24280991 Msa0945490:CDS 50.0%
CGATCGCAATTGCAGCATGT+CGG - chr6_3:24281007-24281026 None:intergenic 50.0%
GGGGGAATCATGTCAGATAC+CGG + chr6_3:24281173-24281192 Msa0945490:CDS 50.0%
TCGCCTGTTCCGATTCTTCG+TGG + chr6_3:24277894-24277913 Msa0945490:CDS 55.0%
! GTGGTGTTAGGCCTGTTCCT+GGG + chr6_3:24277913-24277932 Msa0945490:CDS 55.0%
CAAGCATGTCTCCCAGGAAC+AGG - chr6_3:24277927-24277946 None:intergenic 55.0%
CCAACACAAGCATGTCTCCC+AGG - chr6_3:24277933-24277952 None:intergenic 55.0%
CCTGGGAGACATGCTTGTGT+TGG + chr6_3:24277930-24277949 Msa0945490:CDS 55.0%
GTTCGCGGAGTTAGTCCTCT+CGG + chr6_3:24278341-24278360 Msa0945490:CDS 55.0%
TTCGCGGAGTTAGTCCTCTC+GGG + chr6_3:24278342-24278361 Msa0945490:CDS 55.0%
!! CTAAGGCGTTGCGGAAAAGC+TGG + chr6_3:24278423-24278442 Msa0945490:CDS 55.0%
CGTTGCGGAAAAGCTGGGAA+GGG + chr6_3:24278429-24278448 Msa0945490:CDS 55.0%
TCTTCAGAAGCCGGACTTCC+CGG + chr6_3:24279174-24279193 Msa0945490:CDS 55.0%
GCACAGAGATGCAGCACAGA+TGG + chr6_3:24279789-24279808 Msa0945490:CDS 55.0%
AGCACAGATGGCAGCAACTG+AGG + chr6_3:24279801-24279820 Msa0945490:CDS 55.0%
CAAGGAACTCCGCGCAAACA+AGG + chr6_3:24280889-24280908 Msa0945490:CDS 55.0%
TGCAATTGCGATCGCGAGAC+TGG + chr6_3:24281013-24281032 Msa0945490:CDS 55.0%
! CGTGGTGTTAGGCCTGTTCC+TGG + chr6_3:24277912-24277931 Msa0945490:CDS 60.0%
GCTGATTGCTAAGGTGGGGG+TGG + chr6_3:24278301-24278320 Msa0945490:CDS 60.0%
GATTGCTAAGGTGGGGGTGG+TGG + chr6_3:24278304-24278323 Msa0945490:CDS 60.0%
!! TAAGGTGGGGGTGGTGGAGA+CGG + chr6_3:24278310-24278329 Msa0945490:CDS 60.0%
!! GAGACGGGAAAGGGTGTTCG+CGG + chr6_3:24278326-24278345 Msa0945490:CDS 60.0%
GCGTTGCGGAAAAGCTGGGA+AGG + chr6_3:24278428-24278447 Msa0945490:CDS 60.0%
!! AAGGTGGGGGTGGTGGAGAC+GGG + chr6_3:24278311-24278330 Msa0945490:CDS 65.0%
!! GGGGTGGTGGAGACGGGAAA+GGG + chr6_3:24278317-24278336 Msa0945490:CDS 65.0%
!! GGGGGTGGTGGAGACGGGAA+AGG + chr6_3:24278316-24278335 Msa0945490:CDS 70.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 24277122 24281609 24277122 ID=Msa0945490;Name=Msa0945490
chr6_3 mRNA 24277122 24281609 24277122 ID=Msa0945490-mRNA-1;Parent=Msa0945490;Name=Msa0945490-mRNA-1;_AED=0.10;_eAED=0.10;_QI=493|1|1|1|1|1|4|295|725
chr6_3 exon 24277122 24278535 24277122 ID=Msa0945490-mRNA-1:exon:6937;Parent=Msa0945490-mRNA-1
chr6_3 exon 24278988 24279290 24278988 ID=Msa0945490-mRNA-1:exon:6938;Parent=Msa0945490-mRNA-1
chr6_3 exon 24279778 24279869 24279778 ID=Msa0945490-mRNA-1:exon:6939;Parent=Msa0945490-mRNA-1
chr6_3 exon 24280453 24281609 24280453 ID=Msa0945490-mRNA-1:exon:6940;Parent=Msa0945490-mRNA-1
chr6_3 five_prime_UTR 24277122 24277614 24277122 ID=Msa0945490-mRNA-1:five_prime_utr;Parent=Msa0945490-mRNA-1
chr6_3 CDS 24277615 24278535 24277615 ID=Msa0945490-mRNA-1:cds;Parent=Msa0945490-mRNA-1
chr6_3 CDS 24278988 24279290 24278988 ID=Msa0945490-mRNA-1:cds;Parent=Msa0945490-mRNA-1
chr6_3 CDS 24279778 24279869 24279778 ID=Msa0945490-mRNA-1:cds;Parent=Msa0945490-mRNA-1
chr6_3 CDS 24280453 24281314 24280453 ID=Msa0945490-mRNA-1:cds;Parent=Msa0945490-mRNA-1
chr6_3 three_prime_UTR 24281315 24281609 24281315 ID=Msa0945490-mRNA-1:three_prime_utr;Parent=Msa0945490-mRNA-1
Gene Sequence

>Msa0945490

ATGGCAAATCTAGTTCCTGGGGTGCTACTAAAGTTAATGCAGCACATGAACACAGACATAAAAGTTGGTGGTGAACATAGATCATCATTGTTACAAGTTGTGAGCATTGTTCCAGCACTAGCAGGTGGAGATTTGTTTACAAATCAAGGCTTTTATGTTAAGGTTTCTGATTCATCACATGCTACTTATGTCTCTCTCCCTGATGAACATGATGATCTAATCCTTAGTGACAAGATTCAGTTAGGCCAGTTTGTTTTTGTTGATCGGTTTGAAGCTGCTTCGCCTGTTCCGATTCTTCGTGGTGTTAGGCCTGTTCCTGGGAGACATGCTTGTGTTGGAACACCTGAAGATATTGTTGCAACTAACTCACTTGGTTTTCTTAGCAATGCTTCTGAGGTTAAGGTTAAGAGGAATAGTGTTTGTTCCAAGTCCTCTCCAATGAAAGTGTTGGAGAATCATCAAGAACAAGTAGATAAGAAATCAATGGTTTTAGGTAGATGTAAATCTCAGACAGCAAAAGATTCTGTTGTTGATTTTGTGAAGAAGGAAAAGTTAACAAGATTAAAGTCATTGAATTCAAGAGCTATTGTTCCTTCTTCACCTACTAGTTGCTATTCTTTGCCTACTTCTTTTGAGAAATTCTCTAATGGAGTTAAGCAACAAGGAAATATCAATGGAGTGGATAGGCTGATTGCTAAGGTGGGGGTGGTGGAGACGGGAAAGGGTGTTCGCGGAGTTAGTCCTCTCGGGAAGAGAATTGCAGTTGGAAATTCAATCAGAAATTTAGTTCAAGGAATTGAACTTGGTGCTAAGGCGTTGCGGAAAAGCTGGGAAGGGAACATGGAAGTTAAGAATAATAAAGAGACATCCAAATCAAGGGCATCTTCTAAGTGTGATTCTAAGCCTGAATTTCGTAGCACAACTCCTAGGAAAAGTACATCGAGTGAGAAGTTTCCTTCTAAAGATTACGAGAGTAAGACACAAACACCAACCAAGTCCTCTAAGGAAGAAAACAAGATTCAAAAATCTATAAAGAAAGTTAACGGTGATGGAACTATGGAAGAACAAGAAAAGACAACGAAGCAAAGGAACTCTTTTGGAAAGAAATCTTCAGAAGCCGGACTTCCCGGAAACTTTGTCAAGGTTTCAGTAAATAGTAAAAAAGTGACAGAAGCAAGTGTTCAATGGACTTCACTCCCTTCATCTATTGCGAAGCTTGGGAGGGAAGTAATGAAGCACAGAGATGCAGCACAGATGGCAGCAACTGAGGCTATGCAAGAGGCTGCTACTGCTGATAGTTTGCTACAATGTCTTAGTGTGTATGCAGAGCTAAGTAATTCTGCCAAGGAACATAACCCTCAGAATACAATTGATCAGTTTTTAACGCTTCACACTAGCCTGAATAGTGCGCGGATGATTTCAGATTCCCTTTCTAAAACCATTCCAGATGGTTCATCTCCAGATAATGAAAGAATCACAACAGAAGAAGCACTAAAACTCAAATCAGATAGACAAAAACTTGCAGCTTCTTGGGTCCAAGCTGCCTTATCCACCAATCTCTCATCCTTTTCTGTTTATAACCGAGAGCCTCAATTGTCCAAGCTTCCTGTTTCAACTACAAGTAATTCTCAAAATCAAAAGATTGTTCTTGGAAGTAAACCAATTTTAGTCCTCGAAAATTCAAGAGAAGACGCTTCATTGAAAGCTCATGGAAAAACTCGTCCAGCAGTAGCTAATTCCAAACAAGCCTTACAAGGAACTCCGCGCAAACAAGGTGATGCAATATCAAATCCAAAAAAGCAACTAGTCCAACAACCACTCCAAGAGTGGATTAAAGGAAATGACCTTGATGCGGCGGTTAATTTAGCCGACATGCTGCAATTGCGATCGCGAGACTGGTTTTTATTGTTTGTTGAGAAATTTTTGGACAGTGATGGAGACATTGGTTTGTCAAACAATGGTCAAATAGCAGGCATGCTCACTCAACTTAAAAGCGTCAACGATTGGTTGGATGAGATAGGATCGAGTAAAAATGAGGGGGAATCATGTCAGATACCGGTAGAGACAATTGATAGACTCAGGAAGAAGATATACGAATATCTTCTTACACATGTTGAATCTGCTGCTGCTGCCCTTACTTCTGACTCACAATCATCAGAGATCAAAGGCAAAAAGTGA
Protein sequence

>Msa0945490

MANLVPGVLLKLMQHMNTDIKVGGEHRSSLLQVVSIVPALAGGDLFTNQGFYVKVSDSSHATYVSLPDEHDDLILSDKIQLGQFVFVDRFEAASPVPILRGVRPVPGRHACVGTPEDIVATNSLGFLSNASEVKVKRNSVCSKSSPMKVLENHQEQVDKKSMVLGRCKSQTAKDSVVDFVKKEKLTRLKSLNSRAIVPSSPTSCYSLPTSFEKFSNGVKQQGNINGVDRLIAKVGVVETGKGVRGVSPLGKRIAVGNSIRNLVQGIELGAKALRKSWEGNMEVKNNKETSKSRASSKCDSKPEFRSTTPRKSTSSEKFPSKDYESKTQTPTKSSKEENKIQKSIKKVNGDGTMEEQEKTTKQRNSFGKKSSEAGLPGNFVKVSVNSKKVTEASVQWTSLPSSIAKLGREVMKHRDAAQMAATEAMQEAATADSLLQCLSVYAELSNSAKEHNPQNTIDQFLTLHTSLNSARMISDSLSKTIPDGSSPDNERITTEEALKLKSDRQKLAASWVQAALSTNLSSFSVYNREPQLSKLPVSTTSNSQNQKIVLGSKPILVLENSREDASLKAHGKTRPAVANSKQALQGTPRKQGDAISNPKKQLVQQPLQEWIKGNDLDAAVNLADMLQLRSRDWFLLFVEKFLDSDGDIGLSNNGQIAGMLTQLKSVNDWLDEIGSSKNEGESCQIPVETIDRLRKKIYEYLLTHVESAAAALTSDSQSSEIKGKK*