AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0549360

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0549360 MtrunA17_Chr4g0033751 96.011 727 27 1 1 725 1 727 0.0 1424
Msa0549360 MtrunA17_Chr2g0329581 62.681 761 209 17 1 718 1 729 0.0 817
Msa0549360 MtrunA17_Chr6g0475401 63.025 119 44 0 1 119 1 119 8.89e-48 177
Msa0549360 MtrunA17_Chr6g0475401 35.833 120 60 3 608 712 412 529 3.08e-12 69.7
Msa0549360 MtrunA17_Chr5g0413621 57.025 121 51 1 1 120 1 121 1.52e-41 160
Msa0549360 MtrunA17_Chr4g0062781 56.667 120 52 0 1 120 1 120 3.61e-40 157
Msa0549360 MtrunA17_Chr2g0309091 31.680 363 196 13 369 711 254 584 7.57e-37 146
Msa0549360 MtrunA17_Chr2g0309091 46.825 126 61 2 1 124 1 122 1.33e-26 115
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0549360 AT1G08760.1 51.747 744 298 17 1 706 1 721 0.0 677
Msa0549360 AT3G14170.1 61.345 119 46 0 1 119 1 119 2.81e-45 170
Msa0549360 AT3G14170.1 35.338 133 69 3 594 712 374 503 4.95e-13 72.8
Msa0549360 AT3G14170.1 34.831 89 58 0 384 472 250 338 1.67e-12 70.9
Msa0549360 AT3G14170.2 61.345 119 46 0 1 119 1 119 2.94e-45 169
Msa0549360 AT3G14170.2 35.338 133 69 3 594 712 375 504 5.32e-13 72.4
Msa0549360 AT3G14170.2 34.831 89 58 0 384 472 251 339 1.82e-12 70.9
Msa0549360 AT4G13370.1 58.400 125 52 0 1 125 1 125 3.07e-42 164
Msa0549360 AT4G13370.1 28.135 327 160 6 382 707 413 665 2.24e-23 105
Msa0549360 AT1G23790.1 57.377 122 51 1 1 121 1 122 3.53e-41 158
Msa0549360 AT1G70340.1 57.500 120 50 1 1 119 1 120 1.27e-39 154
Msa0549360 AT3G19610.1 48.333 120 61 1 1 119 29 148 7.19e-36 144
Msa0549360 AT3G19610.1 27.108 332 174 9 390 709 335 610 2.26e-22 102
Msa0549360 AT2G31920.1 44.697 132 64 4 1 124 1 131 1.74e-25 112
Msa0549360 AT2G31920.1 27.300 337 191 11 376 708 284 570 2.43e-21 99.4

Find 162 sgRNAs with CRISPR-Local

Find 261 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGAGTTCTGATTATTTATT+TGG 0.095740 4_1:+44463503 Msa0549360:three_prime_UTR
TCCATTGTCCATTGTTCAAC+TGG 0.204198 4_1:+44459497 Msa0549360:five_prime_UTR
CAAAATCAAAAGATTGTTCT+TGG 0.220021 4_1:+44462777 Msa0549360:CDS
TGAAACCTTGACAAAGTTTC+CGG 0.253676 4_1:-44461204 None:intergenic
GTTGTGATTCTTTCATTATC+TGG 0.256643 4_1:-44462606 None:intergenic
CCACTCCAAGAGTGGATTAA+AGG 0.275711 4_1:+44462963 Msa0549360:CDS
CTTACTGTGCTACGAAATTC+AGG 0.277895 4_1:-44460529 None:intergenic
CTTAGAAGATGCCCTTGATT+TGG 0.289921 4_1:-44460494 None:intergenic
ATAGTTTGCTACAATGTCTT+AGG 0.295406 4_1:+44461859 Msa0549360:CDS
AAATCATCCGCGCACTATTC+AGG 0.311812 4_1:-44462545 None:intergenic
CGTGGTGTTAGGCCTGTTCC+TGG 0.317826 4_1:+44459923 Msa0549360:CDS
GCATACAATAACTTTGTAAA+AGG 0.320237 4_1:-44463567 None:intergenic
GGAGTTCTGATTATTTATTT+GGG 0.327095 4_1:+44463504 Msa0549360:three_prime_UTR
TCTTCAGAAGCCGGACTTCC+CGG 0.331048 4_1:+44461185 Msa0549360:CDS
ATTGTGGCTTGGAGGAAATT+TGG 0.333264 4_1:+44463399 Msa0549360:three_prime_UTR
TAGCAATGCTTCTGAGGTTA+AGG 0.340241 4_1:+44460006 Msa0549360:CDS
TGATTCTCCAACACTTTCAT+TGG 0.340325 4_1:-44460061 None:intergenic
TTATTTCTTTAATTCAGATT+TGG 0.342020 4_1:+44459432 Msa0549360:five_prime_UTR
AGTTCCTTGTAAGGCTTGTT+TGG 0.347179 4_1:-44462886 None:intergenic
AAAATGGCAAATCTAGTTCC+TGG 0.348238 4_1:+44459623 Msa0549360:exon
TTACTCTCGTAATCTTTAGA+AGG 0.353943 4_1:-44461032 None:intergenic
CACTTTCATTGGAGAGGACT+TGG 0.357255 4_1:-44460050 None:intergenic
TCCACTCTTGGAGTGGTTGT+TGG 0.358763 4_1:-44462956 None:intergenic
TCAATCAGAAATTTAGTTCA+AGG 0.364637 4_1:+44460397 Msa0549360:CDS
TACTCTTCTAATACTCAAAT+GGG 0.368103 4_1:-44459572 None:intergenic
ACGAAGCAAAGGAACTCTTT+TGG 0.370193 4_1:+44461155 Msa0549360:CDS
GGAGATTTGTTTACAAATCA+AGG 0.381180 4_1:+44459752 Msa0549360:CDS
ATTAGATCATCATGTTCATC+AGG 0.391695 4_1:-44459824 None:intergenic
TTCCGATTCTTCGTGGTGTT+AGG 0.393778 4_1:+44459912 Msa0549360:CDS
CATTTCCTTTAATCCACTCT+TGG 0.393945 4_1:-44462968 None:intergenic
TTACTCTTCTAATACTCAAA+TGG 0.400158 4_1:-44459573 None:intergenic
GGATGAGAGATTGGTGGATA+AGG 0.407044 4_1:-44462691 None:intergenic
AACACCAACCAAGTCCTCTA+AGG 0.411554 4_1:+44461061 Msa0549360:CDS
CTTAGTGACAAGATTCAGTT+AGG 0.416620 4_1:+44459848 Msa0549360:CDS
GACAAAGTTTCCGGGAAGTC+CGG 0.419326 4_1:-44461195 None:intergenic
AGTTAACGGTGATGGAACTA+TGG 0.422657 4_1:+44461115 Msa0549360:CDS
GAATTACTTGTAGTTGAAAC+AGG 0.432215 4_1:-44462753 None:intergenic
GAGAATTTCTCAAAAGAAGT+AGG 0.433004 4_1:-44460247 None:intergenic
CTTCTGAGGTTAAGGTTAAG+AGG 0.436051 4_1:+44460014 Msa0549360:CDS
CCTTCATCTATTGCGAAGCT+TGG 0.438351 4_1:+44461275 Msa0549360:CDS
CTAAGGCGTTGCGGAAAAGC+TGG 0.438960 4_1:+44460434 Msa0549360:CDS
AACAGAAAAGGATGAGAGAT+TGG 0.439259 4_1:-44462700 None:intergenic
TGTTTGGAATTAGCTACTGC+TGG 0.443115 4_1:-44462870 None:intergenic
GAAACCTTGACAAAGTTTCC+GGG 0.443615 4_1:-44461203 None:intergenic
TTTGCGCGGAGTTCCTTGTA+AGG 0.448101 4_1:-44462895 None:intergenic
GGGGTGGTGGAGACGGGAAA+GGG 0.448470 4_1:+44460328 Msa0549360:CDS
TTAGTTGCAACAATATCTTC+AGG 0.451042 4_1:-44459968 None:intergenic
ATTCTGAGGGTTATGTTCCT+TGG 0.451057 4_1:-44462490 None:intergenic
ATAAAGAGACATCCAAATCA+AGG 0.456508 4_1:+44460482 Msa0549360:CDS
AAATCTATAAAGAAAGTTAA+CGG 0.457905 4_1:+44461101 Msa0549360:CDS
CCATTGTCCATTGTTCAACT+GGG 0.460721 4_1:+44459498 Msa0549360:five_prime_UTR
TGCAATTGCGATCGCGAGAC+TGG 0.462113 4_1:+44463024 Msa0549360:CDS
CTTCATCTATTGCGAAGCTT+GGG 0.468822 4_1:+44461276 Msa0549360:CDS
GGAAAGAAATCTTCAGAAGC+CGG 0.471468 4_1:+44461176 Msa0549360:CDS
GGCCTAACACCACGAAGAAT+CGG 0.472446 4_1:-44459914 None:intergenic
TTATCTGGAGATGAACCATC+TGG 0.472677 4_1:-44462591 None:intergenic
GATGCATTATTATTGTGGCT+TGG 0.474077 4_1:+44463388 Msa0549360:three_prime_UTR
CTTAAGATGCATTATTATTG+TGG 0.475857 4_1:+44463383 Msa0549360:three_prime_UTR
AACTTAAAAGCGTCAACGAT+TGG 0.476478 4_1:+44463132 Msa0549360:CDS
TCGCCTGTTCCGATTCTTCG+TGG 0.478185 4_1:+44459905 Msa0549360:CDS
CTAAATTAACCGCCGCATCA+AGG 0.478940 4_1:-44462992 None:intergenic
AGACTTCACATAATTGTCAA+TGG 0.480532 4_1:+44459118 None:intergenic
CAAGCATGTCTCCCAGGAAC+AGG 0.480995 4_1:-44459935 None:intergenic
AACTGATCAATTGTATTCTG+AGG 0.483206 4_1:-44462504 None:intergenic
CATCTATTGCGAAGCTTGGG+AGG 0.483470 4_1:+44461279 Msa0549360:CDS
TGTAGTTGAAACAGGAAGCT+TGG 0.485663 4_1:-44462745 None:intergenic
CTCTCGGTTATAAACAGAAA+AGG 0.486637 4_1:-44462712 None:intergenic
GACGCTTCATTGAAAGCTCA+TGG 0.489464 4_1:+44462837 Msa0549360:CDS
TAGCAACTAGTAGGTGAAGA+AGG 0.490380 4_1:-44460217 None:intergenic
TCAAACAATGGTCAAATAGC+AGG 0.495685 4_1:+44463098 Msa0549360:CDS
GTTTGAGGTATAGACATAGT+TGG 0.496293 4_1:+44463483 Msa0549360:three_prime_UTR
CTCCAACACTTTCATTGGAG+AGG 0.497923 4_1:-44460056 None:intergenic
CCAAGCTTCGCAATAGATGA+AGG 0.500292 4_1:-44461275 None:intergenic
ATGATTGTGAGTCAGAAGTA+AGG 0.502497 4_1:-44463280 None:intergenic
GTTCGCGGAGTTAGTCCTCT+CGG 0.502784 4_1:+44460352 Msa0549360:CDS
TTCTGGTGTTCCAGACTCCT+AGG 0.504156 4_1:+44460985 Msa0549360:intron
TGACAGAAGCAAGTGTTCAA+TGG 0.504746 4_1:+44461243 Msa0549360:CDS
GGATAGGCTGATTGCTAAGG+TGG 0.505127 4_1:+44460306 Msa0549360:CDS
AAATCTCCACCTGCTAGTGC+TGG 0.505213 4_1:-44459737 None:intergenic
GGCAAAGAATAGCAACTAGT+AGG 0.507800 4_1:-44460226 None:intergenic
AAATGGCAAATCTAGTTCCT+GGG 0.508006 4_1:+44459624 Msa0549360:exon
CCTTTAATCCACTCTTGGAG+TGG 0.512337 4_1:-44462963 None:intergenic
CTAACTGAATCTTGTCACTA+AGG 0.514275 4_1:-44459847 None:intergenic
GCACAGAGATGCAGCACAGA+TGG 0.515070 4_1:+44461800 Msa0549360:CDS
TTAGTTCAAGGAATTGAACT+TGG 0.515121 4_1:+44460409 Msa0549360:CDS
TAAAAGCGTCAACGATTGGT+TGG 0.515601 4_1:+44463136 Msa0549360:CDS
AAGCAACAAGGAAATATCAA+TGG 0.517246 4_1:+44460280 Msa0549360:CDS
TCTTCCTTAGAGGACTTGGT+TGG 0.518185 4_1:-44461065 None:intergenic
ATAAAGAAAGTTAACGGTGA+TGG 0.518959 4_1:+44461107 Msa0549360:CDS
ACACCACGAAGAATCGGAAC+AGG 0.519947 4_1:-44459908 None:intergenic
ATAAATCCTACATGGGTTTG+AGG 0.521514 4_1:+44463468 Msa0549360:three_prime_UTR
AAGGTAGACTATGATAATCA+TGG 0.522596 4_1:-44459143 None:intergenic
TTGGACAGTGATGGAGACAT+TGG 0.524679 4_1:+44463071 Msa0549360:CDS
AATTCCAAACAAGCCTTACA+AGG 0.526341 4_1:+44462882 Msa0549360:CDS
GAGACGGGAAAGGGTGTTCG+CGG 0.527317 4_1:+44460337 Msa0549360:CDS
AGCATTGTTCCAGCACTAGC+AGG 0.527702 4_1:+44459728 Msa0549360:CDS
AGGAATTGAACTTGGTGCTA+AGG 0.528575 4_1:+44460417 Msa0549360:CDS
GCATTATTATTGTGGCTTGG+AGG 0.532477 4_1:+44463391 Msa0549360:three_prime_UTR
AAGAAAAGACAACGAAGCAA+AGG 0.535441 4_1:+44461144 Msa0549360:CDS
AGTCTATCAATTGTCTCTAC+CGG 0.535694 4_1:-44463203 None:intergenic
TTCGCGGAGTTAGTCCTCTC+GGG 0.536295 4_1:+44460353 Msa0549360:CDS
TCTATACCTCAAACCCATGT+AGG 0.541148 4_1:-44463474 None:intergenic
ACAAGTAGATAAGAAATCAA+TGG 0.541333 4_1:+44460090 Msa0549360:CDS
CAAGGAACTCCGCGCAAACA+AGG 0.543841 4_1:+44462900 Msa0549360:CDS
AACGATTGGTTGGATGAGAT+AGG 0.546451 4_1:+44463146 Msa0549360:CDS
TTCACAACCCAGTTGAACAA+TGG 0.547441 4_1:-44459505 None:intergenic
CCTGGGAGACATGCTTGTGT+TGG 0.547891 4_1:+44459941 Msa0549360:CDS
ATGAACACAGACATAAAAGT+TGG 0.550757 4_1:+44459671 Msa0549360:CDS
GAAAAGCTGGGAAGGGAACA+TGG 0.551231 4_1:+44460447 Msa0549360:CDS
ACTGATCAATTGTATTCTGA+GGG 0.552570 4_1:-44462503 None:intergenic
GTGGTGTTAGGCCTGTTCCT+GGG 0.553445 4_1:+44459924 Msa0549360:CDS
ATTGTTGCAACTAACTCACT+TGG 0.554897 4_1:+44459977 Msa0549360:CDS
AGAAAAGGATGAGAGATTGG+TGG 0.555800 4_1:-44462697 None:intergenic
GAAATATCAATGGAGTGGAT+AGG 0.557954 4_1:+44460290 Msa0549360:CDS
GTCCTCTCCAATGAAAGTGT+TGG 0.558109 4_1:+44460054 Msa0549360:CDS
CTTTCTAAAACCATTCCAGA+TGG 0.563456 4_1:+44462576 Msa0549360:CDS
ACAGGAAGCTTGGACAATTG+AGG 0.563685 4_1:-44462735 None:intergenic
GCTTGGACAATTGAGGCTCT+CGG 0.566507 4_1:-44462728 None:intergenic
ATCTATTGCGAAGCTTGGGA+GGG 0.567095 4_1:+44461280 Msa0549360:CDS
GACATTGGTTTGTCAAACAA+TGG 0.568828 4_1:+44463086 Msa0549360:CDS
GAGTTCTGATTATTTATTTG+GGG 0.570661 4_1:+44463505 Msa0549360:three_prime_UTR
ATAGGCTGATTGCTAAGGTG+GGG 0.576897 4_1:+44460308 Msa0549360:CDS
AACTAGAAACTAGAAACTGA+TGG 0.578032 4_1:-44459459 None:intergenic
TAGGCTGATTGCTAAGGTGG+GGG 0.578325 4_1:+44460309 Msa0549360:CDS
TCCAACAACCACTCCAAGAG+TGG 0.580092 4_1:+44462955 Msa0549360:CDS
TGGAGATGAACCATCTGGAA+TGG 0.580483 4_1:-44462586 None:intergenic
TTTGTACATAAATCCTACAT+GGG 0.580524 4_1:+44463461 Msa0549360:three_prime_UTR
GATTGGTGGATAAGGCAGCT+TGG 0.581530 4_1:-44462683 None:intergenic
CTCGGGAAGAGAATTGCAGT+TGG 0.583302 4_1:+44460370 Msa0549360:CDS
CCAACACAAGCATGTCTCCC+AGG 0.583666 4_1:-44459941 None:intergenic
AACAATAAATGTGAAATGTG+AGG 0.588377 4_1:+44463529 Msa0549360:three_prime_UTR
TAGAGACAATTGATAGACTC+AGG 0.589019 4_1:+44463207 Msa0549360:CDS
AACTTGGTGCTAAGGCGTTG+CGG 0.593967 4_1:+44460425 Msa0549360:CDS
TAAAGAGACATCCAAATCAA+GGG 0.597215 4_1:+44460483 Msa0549360:CDS
ACAAGGAAATATCAATGGAG+TGG 0.598845 4_1:+44460285 Msa0549360:CDS
AACACAGACATAAAAGTTGG+TGG 0.601218 4_1:+44459674 Msa0549360:CDS
GCGTTGCGGAAAAGCTGGGA+AGG 0.605950 4_1:+44460439 Msa0549360:CDS
CTCACCATTCTAAAAGCACA+AGG 0.606009 4_1:-44459162 None:intergenic
AGCAACTGAGGCTATGCAAG+AGG 0.606268 4_1:+44461824 Msa0549360:CDS
TGATTGTGAGTCAGAAGTAA+GGG 0.607233 4_1:-44463279 None:intergenic
ATTAACTTTAGTAGCACCCC+AGG 0.608080 4_1:-44459641 None:intergenic
AGGAAATGACCTTGATGCGG+CGG 0.609502 4_1:+44462983 Msa0549360:CDS
CGATCGCAATTGCAGCATGT+CGG 0.611032 4_1:-44463015 None:intergenic
ATTGCATCACCTTGTTTGCG+CGG 0.616347 4_1:-44462909 None:intergenic
TCACAATCATCAGAGATCAA+AGG 0.618878 4_1:+44463293 Msa0549360:CDS
AGCACAGATGGCAGCAACTG+AGG 0.619137 4_1:+44461812 Msa0549360:CDS
ACTTCCCGGAAACTTTGTCA+AGG 0.621117 4_1:+44461199 Msa0549360:CDS
TAAGGCGTTGCGGAAAAGCT+GGG 0.622391 4_1:+44460435 Msa0549360:CDS
GATAGGCTGATTGCTAAGGT+GGG 0.622398 4_1:+44460307 Msa0549360:CDS
CCCAGTTGAACAATGGACAA+TGG 0.628698 4_1:-44459498 None:intergenic
CAAGCTTCGCAATAGATGAA+GGG 0.632626 4_1:-44461274 None:intergenic
ACTCTTCTAATACTCAAATG+GGG 0.638325 4_1:-44459571 None:intergenic
CGTTGCGGAAAAGCTGGGAA+GGG 0.647668 4_1:+44460440 Msa0549360:CDS
AGAGCTAAGTAATTCTGCCA+AGG 0.648404 4_1:+44462473 Msa0549360:CDS
AGTGGATAGGCTGATTGCTA+AGG 0.655516 4_1:+44460303 Msa0549360:CDS
TCTAATGGAGTTAAGCAACA+AGG 0.656865 4_1:+44460268 Msa0549360:CDS
AATGGCAAATCTAGTTCCTG+GGG 0.665627 4_1:+44459625 Msa0549360:exon
TTAGATCATCATGTTCATCA+GGG 0.666720 4_1:-44459823 None:intergenic
TAAAGGAAATGACCTTGATG+CGG 0.678002 4_1:+44462980 Msa0549360:CDS
ACACTAGCCTGAATAGTGCG+CGG 0.681954 4_1:+44462538 Msa0549360:CDS
ATTGTTCCAGCACTAGCAGG+TGG 0.697945 4_1:+44459731 Msa0549360:CDS
ACTGCAATTCTCTTCCCGAG+AGG 0.722826 4_1:-44460367 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAAAAGAAAAAGTAAATT+TGG - chr4_1:44459327-44459346 None:intergenic 15.0%
!!! TTATTTCTTTAATTCAGATT+TGG + chr4_1:44459432-44459451 Msa0549360:five_prime_UTR 15.0%
!! TAAAATAAGTAAATACAAAC+AGG - chr4_1:44460572-44460591 None:intergenic 15.0%
!! AAATCTATAAAGAAAGTTAA+CGG + chr4_1:44461101-44461120 Msa0549360:CDS 15.0%
!!! AGAGAATTTTGATTTTTTTT+TGG - chr4_1:44463428-44463447 None:intergenic 15.0%
!! ATTTATGTACAAAAAAAAAG+TGG - chr4_1:44463454-44463473 None:intergenic 15.0%
!!! AATGAAGAGATTTTATACTA+TGG - chr4_1:44459236-44459255 None:intergenic 20.0%
!!! AATTTTGATCTATACAATTG+TGG + chr4_1:44459388-44459407 Msa0549360:five_prime_UTR 20.0%
!! AGTAAGTTTATTCACAATTT+AGG + chr4_1:44460546-44460565 Msa0549360:intron 20.0%
!! CATACAACATTCATATTATT+AGG + chr4_1:44461608-44461627 Msa0549360:intron 20.0%
!! TTTATTAGTAATGCATATCT+TGG - chr4_1:44461981-44462000 None:intergenic 20.0%
!! AAGATATGCATTACTAATAA+AGG + chr4_1:44461980-44461999 Msa0549360:intron 20.0%
!! AAGTATCAACATTATATCTT+CGG - chr4_1:44462085-44462104 None:intergenic 20.0%
!! TATTGTAATCTAATCAATGT+AGG + chr4_1:44462182-44462201 Msa0549360:intron 20.0%
!!! TTTTTAAAAGAAATTGGGTA+AGG - chr4_1:44462353-44462372 None:intergenic 20.0%
!!! ATTGTTTGTTGAGAAATTTT+TGG + chr4_1:44463052-44463071 Msa0549360:CDS 20.0%
!! ACTATGGTTTTTGTATTAGT+GGG - chr4_1:44459220-44459239 None:intergenic 25.0%
!! TACTATGGTTTTTGTATTAG+TGG - chr4_1:44459221-44459240 None:intergenic 25.0%
! TACTCTTCTAATACTCAAAT+GGG - chr4_1:44459575-44459594 None:intergenic 25.0%
! TTACTCTTCTAATACTCAAA+TGG - chr4_1:44459576-44459595 None:intergenic 25.0%
!! AAATCAAGGCTTTTATGTTA+AGG + chr4_1:44459766-44459785 Msa0549360:CDS 25.0%
! ACAAGTAGATAAGAAATCAA+TGG + chr4_1:44460090-44460109 Msa0549360:CDS 25.0%
!! GATAAGAAATCAATGGTTTT+AGG + chr4_1:44460097-44460116 Msa0549360:CDS 25.0%
!!! TCTTTTGAGAAATTCTCTAA+TGG + chr4_1:44460253-44460272 Msa0549360:CDS 25.0%
!! TCAATCAGAAATTTAGTTCA+AGG + chr4_1:44460397-44460416 Msa0549360:CDS 25.0%
! TATAAGAAGTGATTATGCAT+AGG - chr4_1:44460741-44460760 None:intergenic 25.0%
!! TTTTAACAAGATTCACTTTC+TGG + chr4_1:44460968-44460987 Msa0549360:intron 25.0%
! TAGTTGTATCATTAGTTAGT+TGG + chr4_1:44461354-44461373 Msa0549360:intron 25.0%
!! AGCATTAAATACTTTTGTTG+GGG - chr4_1:44461403-44461422 None:intergenic 25.0%
!! GAGCATTAAATACTTTTGTT+GGG - chr4_1:44461404-44461423 None:intergenic 25.0%
! GTATACAACATTCATATTGT+TGG + chr4_1:44461640-44461659 Msa0549360:intron 25.0%
! CATAAACCTTAAGTCAATAA+CGG - chr4_1:44461667-44461686 None:intergenic 25.0%
! TAATGAATAATGAATCCAGT+AGG - chr4_1:44461704-44461723 None:intergenic 25.0%
!!! TTTTTTTTTCACATCTTGAC+AGG + chr4_1:44461767-44461786 Msa0549360:intron 25.0%
!! TTAAAACAAATCACCTTTTG+TGG + chr4_1:44462027-44462046 Msa0549360:intron 25.0%
!!! ATTTTTTGCATATCCACAAA+AGG - chr4_1:44462043-44462062 None:intergenic 25.0%
!!! AGACGATTTTAAGTTGTTTA+TGG + chr4_1:44462140-44462159 Msa0549360:intron 25.0%
! TGAAACATATAGTGAAATTC+AGG + chr4_1:44462213-44462232 Msa0549360:intron 25.0%
!! AAGATATTTCTGACACTATT+TGG + chr4_1:44462427-44462446 Msa0549360:intron 25.0%
! CAAAATCAAAAGATTGTTCT+TGG + chr4_1:44462777-44462796 Msa0549360:CDS 25.0%
! CTTAAGATGCATTATTATTG+TGG + chr4_1:44463383-44463402 Msa0549360:three_prime_UTR 25.0%
!! TTTTGTACATAAATCCTACA+TGG + chr4_1:44463460-44463479 Msa0549360:three_prime_UTR 25.0%
! TTTGTACATAAATCCTACAT+GGG + chr4_1:44463461-44463480 Msa0549360:three_prime_UTR 25.0%
!! TGGAGTTCTGATTATTTATT+TGG + chr4_1:44463503-44463522 Msa0549360:three_prime_UTR 25.0%
!! GGAGTTCTGATTATTTATTT+GGG + chr4_1:44463504-44463523 Msa0549360:three_prime_UTR 25.0%
!! GAGTTCTGATTATTTATTTG+GGG + chr4_1:44463505-44463524 Msa0549360:three_prime_UTR 25.0%
! AACAATAAATGTGAAATGTG+AGG + chr4_1:44463529-44463548 Msa0549360:three_prime_UTR 25.0%
! GCATACAATAACTTTGTAAA+AGG - chr4_1:44463570-44463589 None:intergenic 25.0%
AAGGTAGACTATGATAATCA+TGG - chr4_1:44459146-44459165 None:intergenic 30.0%
AACTAGAAACTAGAAACTGA+TGG - chr4_1:44459462-44459481 None:intergenic 30.0%
ACTCTTCTAATACTCAAATG+GGG - chr4_1:44459574-44459593 None:intergenic 30.0%
!!! TTTGCCATTTTTTGTTGCTT+TGG - chr4_1:44459614-44459633 None:intergenic 30.0%
ATGAACACAGACATAAAAGT+TGG + chr4_1:44459671-44459690 Msa0549360:CDS 30.0%
! GGAGATTTGTTTACAAATCA+AGG + chr4_1:44459752-44459771 Msa0549360:CDS 30.0%
TTAGATCATCATGTTCATCA+GGG - chr4_1:44459826-44459845 None:intergenic 30.0%
ATTAGATCATCATGTTCATC+AGG - chr4_1:44459827-44459846 None:intergenic 30.0%
TTAGTTGCAACAATATCTTC+AGG - chr4_1:44459971-44459990 None:intergenic 30.0%
!!! TGTTGTTGATTTTGTGAAGA+AGG + chr4_1:44460150-44460169 Msa0549360:CDS 30.0%
GAGAATTTCTCAAAAGAAGT+AGG - chr4_1:44460250-44460269 None:intergenic 30.0%
AAGCAACAAGGAAATATCAA+TGG + chr4_1:44460280-44460299 Msa0549360:CDS 30.0%
TTAGTTCAAGGAATTGAACT+TGG + chr4_1:44460409-44460428 Msa0549360:CDS 30.0%
ATAAAGAGACATCCAAATCA+AGG + chr4_1:44460482-44460501 Msa0549360:CDS 30.0%
TAAAGAGACATCCAAATCAA+GGG + chr4_1:44460483-44460502 Msa0549360:CDS 30.0%
!! CTTATTTCTATAAGCACTCT+AGG + chr4_1:44460677-44460696 Msa0549360:intron 30.0%
! ATTATGCATAGGCTATTTCA+TGG - chr4_1:44460730-44460749 None:intergenic 30.0%
CTTAATTGATACGTTTATCC+AGG + chr4_1:44460803-44460822 Msa0549360:intron 30.0%
TCAAAGTTGTTCAAAAAGAC+AGG - chr4_1:44460829-44460848 None:intergenic 30.0%
AAACAAAGAAAAGTCCAACA+AGG - chr4_1:44460867-44460886 None:intergenic 30.0%
TTACTCTCGTAATCTTTAGA+AGG - chr4_1:44461035-44461054 None:intergenic 30.0%
!!! AATCTTGTTTTCTTCCTTAG+AGG - chr4_1:44461078-44461097 None:intergenic 30.0%
ATAAAGAAAGTTAACGGTGA+TGG + chr4_1:44461107-44461126 Msa0549360:CDS 30.0%
AAGCTGAAACTGCAAAAATA+AGG - chr4_1:44461325-44461344 None:intergenic 30.0%
! CGAGCATTAAATACTTTTGT+TGG - chr4_1:44461405-44461424 None:intergenic 30.0%
!!! CATTGCCATGTTTTTTAACT+CGG + chr4_1:44461468-44461487 Msa0549360:intron 30.0%
CTTAACCGAGTTAAAAAACA+TGG - chr4_1:44461476-44461495 None:intergenic 30.0%
! GCATGACAATTGATTCAAAT+GGG - chr4_1:44461558-44461577 None:intergenic 30.0%
! TGCATGACAATTGATTCAAA+TGG - chr4_1:44461559-44461578 None:intergenic 30.0%
!! ATAGTTTGCTACAATGTCTT+AGG + chr4_1:44461859-44461878 Msa0549360:CDS 30.0%
GATCTTTGTGTTTCTTAATC+TGG + chr4_1:44461906-44461925 Msa0549360:intron 30.0%
! TCTTAATCTGGTTGAGATTT+TGG + chr4_1:44461918-44461937 Msa0549360:intron 30.0%
CAACATTATATCTTCGGTAT+CGG - chr4_1:44462079-44462098 None:intergenic 30.0%
CTTATCATTGATGAAACATG+TGG + chr4_1:44462102-44462121 Msa0549360:intron 30.0%
AATTCAAACTCTGTCTCTTT+AGG - chr4_1:44462272-44462291 None:intergenic 30.0%
GGAAGATGTTTAAACATCTA+AGG - chr4_1:44462394-44462413 None:intergenic 30.0%
ACTGATCAATTGTATTCTGA+GGG - chr4_1:44462506-44462525 None:intergenic 30.0%
AACTGATCAATTGTATTCTG+AGG - chr4_1:44462507-44462526 None:intergenic 30.0%
!!! ATCTGGAATGGTTTTAGAAA+GGG - chr4_1:44462577-44462596 None:intergenic 30.0%
GTTGTGATTCTTTCATTATC+TGG - chr4_1:44462609-44462628 None:intergenic 30.0%
GAATTACTTGTAGTTGAAAC+AGG - chr4_1:44462756-44462775 None:intergenic 30.0%
!! GAATTTTCGAGGACTAAAAT+TGG - chr4_1:44462810-44462829 None:intergenic 30.0%
ATAGGATCGAGTAAAAATGA+GGG + chr4_1:44463164-44463183 Msa0549360:CDS 30.0%
!! TCTACCTTGTGCTTTTAGAA+TGG + chr4_1:44459158-44459177 Msa0549360:five_prime_UTR 35.0%
! ATGGTTTTTGTATTAGTGGG+TGG - chr4_1:44459217-44459236 None:intergenic 35.0%
!!! CCATTTTTTGTTGCTTTGGT+AGG - chr4_1:44459610-44459629 None:intergenic 35.0%
CCTACCAAAGCAACAAAAAA+TGG + chr4_1:44459607-44459626 Msa0549360:exon 35.0%
! AAAATGGCAAATCTAGTTCC+TGG + chr4_1:44459623-44459642 Msa0549360:exon 35.0%
! AAATGGCAAATCTAGTTCCT+GGG + chr4_1:44459624-44459643 Msa0549360:exon 35.0%
AACACAGACATAAAAGTTGG+TGG + chr4_1:44459674-44459693 Msa0549360:CDS 35.0%
CTAACTGAATCTTGTCACTA+AGG - chr4_1:44459850-44459869 None:intergenic 35.0%
CTTAGTGACAAGATTCAGTT+AGG + chr4_1:44459848-44459867 Msa0549360:CDS 35.0%
!!! GCCAGTTTGTTTTTGTTGAT+CGG + chr4_1:44459870-44459889 Msa0549360:CDS 35.0%
ACCGATCAACAAAAACAAAC+TGG - chr4_1:44459874-44459893 None:intergenic 35.0%
ATTGTTGCAACTAACTCACT+TGG + chr4_1:44459977-44459996 Msa0549360:CDS 35.0%
! TTTTCTTAGCAATGCTTCTG+AGG + chr4_1:44460000-44460019 Msa0549360:CDS 35.0%
TGATTCTCCAACACTTTCAT+TGG - chr4_1:44460064-44460083 None:intergenic 35.0%
TCTAATGGAGTTAAGCAACA+AGG + chr4_1:44460268-44460287 Msa0549360:CDS 35.0%
ACAAGGAAATATCAATGGAG+TGG + chr4_1:44460285-44460304 Msa0549360:CDS 35.0%
GAAATATCAATGGAGTGGAT+AGG + chr4_1:44460290-44460309 Msa0549360:CDS 35.0%
AAGAAAAGACAACGAAGCAA+AGG + chr4_1:44461144-44461163 Msa0549360:CDS 35.0%
TGAAACCTTGACAAAGTTTC+CGG - chr4_1:44461207-44461226 None:intergenic 35.0%
! GAGTTTGAGATAATACCTAC+TGG + chr4_1:44461686-44461705 Msa0549360:intron 35.0%
! CTCTGTCTCTTTAGGTTATA+AGG - chr4_1:44462264-44462283 None:intergenic 35.0%
AGTTTGAATTTCCTCAGGAA+CGG + chr4_1:44462282-44462301 Msa0549360:intron 35.0%
GTCAGAAATATCTTGAGTAG+TGG - chr4_1:44462421-44462440 None:intergenic 35.0%
!!! CATCTGGAATGGTTTTAGAA+AGG - chr4_1:44462578-44462597 None:intergenic 35.0%
!! CTTTCTAAAACCATTCCAGA+TGG + chr4_1:44462576-44462595 Msa0549360:CDS 35.0%
ACAAAAACTTGCAGCTTCTT+GGG + chr4_1:44462659-44462678 Msa0549360:CDS 35.0%
AACAGAAAAGGATGAGAGAT+TGG - chr4_1:44462703-44462722 None:intergenic 35.0%
CTCTCGGTTATAAACAGAAA+AGG - chr4_1:44462715-44462734 None:intergenic 35.0%
AATTCCAAACAAGCCTTACA+AGG + chr4_1:44462882-44462901 Msa0549360:CDS 35.0%
!!! TGTTGGACTAGTTGCTTTTT+TGG - chr4_1:44462942-44462961 None:intergenic 35.0%
CATTTCCTTTAATCCACTCT+TGG - chr4_1:44462971-44462990 None:intergenic 35.0%
TAAAGGAAATGACCTTGATG+CGG + chr4_1:44462980-44462999 Msa0549360:CDS 35.0%
!! GAGAAATTTTTGGACAGTGA+TGG + chr4_1:44463062-44463081 Msa0549360:CDS 35.0%
!! GACATTGGTTTGTCAAACAA+TGG + chr4_1:44463086-44463105 Msa0549360:CDS 35.0%
TCAAACAATGGTCAAATAGC+AGG + chr4_1:44463098-44463117 Msa0549360:CDS 35.0%
!! AACTTAAAAGCGTCAACGAT+TGG + chr4_1:44463132-44463151 Msa0549360:CDS 35.0%
GATAGGATCGAGTAAAAATG+AGG + chr4_1:44463163-44463182 Msa0549360:CDS 35.0%
TAGGATCGAGTAAAAATGAG+GGG + chr4_1:44463165-44463184 Msa0549360:CDS 35.0%
AGTCTATCAATTGTCTCTAC+CGG - chr4_1:44463206-44463225 None:intergenic 35.0%
TAGAGACAATTGATAGACTC+AGG + chr4_1:44463207-44463226 Msa0549360:CDS 35.0%
TGATTGTGAGTCAGAAGTAA+GGG - chr4_1:44463282-44463301 None:intergenic 35.0%
ATGATTGTGAGTCAGAAGTA+AGG - chr4_1:44463283-44463302 None:intergenic 35.0%
TCACAATCATCAGAGATCAA+AGG + chr4_1:44463293-44463312 Msa0549360:CDS 35.0%
GATGCATTATTATTGTGGCT+TGG + chr4_1:44463388-44463407 Msa0549360:three_prime_UTR 35.0%
ATAAATCCTACATGGGTTTG+AGG + chr4_1:44463468-44463487 Msa0549360:three_prime_UTR 35.0%
! GTTTGAGGTATAGACATAGT+TGG + chr4_1:44463483-44463502 Msa0549360:three_prime_UTR 35.0%
! CTCACCATTCTAAAAGCACA+AGG - chr4_1:44459165-44459184 None:intergenic 40.0%
TCCATTGTCCATTGTTCAAC+TGG + chr4_1:44459497-44459516 Msa0549360:five_prime_UTR 40.0%
CCATTGTCCATTGTTCAACT+GGG + chr4_1:44459498-44459517 Msa0549360:five_prime_UTR 40.0%
TTCACAACCCAGTTGAACAA+TGG - chr4_1:44459508-44459527 None:intergenic 40.0%
! AATGGCAAATCTAGTTCCTG+GGG + chr4_1:44459625-44459644 Msa0549360:exon 40.0%
ATTAACTTTAGTAGCACCCC+AGG - chr4_1:44459644-44459663 None:intergenic 40.0%
!! TAGCAATGCTTCTGAGGTTA+AGG + chr4_1:44460006-44460025 Msa0549360:CDS 40.0%
!! CTTCTGAGGTTAAGGTTAAG+AGG + chr4_1:44460014-44460033 Msa0549360:CDS 40.0%
TAGCAACTAGTAGGTGAAGA+AGG - chr4_1:44460220-44460239 None:intergenic 40.0%
GGCAAAGAATAGCAACTAGT+AGG - chr4_1:44460229-44460248 None:intergenic 40.0%
!! AGGAATTGAACTTGGTGCTA+AGG + chr4_1:44460417-44460436 Msa0549360:CDS 40.0%
CTTAGAAGATGCCCTTGATT+TGG - chr4_1:44460497-44460516 None:intergenic 40.0%
CTTACTGTGCTACGAAATTC+AGG - chr4_1:44460532-44460551 None:intergenic 40.0%
TAAGCACTTGTGAGACAGTT+TGG + chr4_1:44460607-44460626 Msa0549360:intron 40.0%
AGACAGTTTGGTAGAGCTTA+TGG + chr4_1:44460619-44460638 Msa0549360:intron 40.0%
TGTCAAACATCAGACCTTGT+TGG + chr4_1:44460850-44460869 Msa0549360:intron 40.0%
! ATGTACTTTTCCTAGGAGTC+TGG - chr4_1:44460998-44461017 None:intergenic 40.0%
! TCACTCGATGTACTTTTCCT+AGG - chr4_1:44461005-44461024 None:intergenic 40.0%
! GTTTTCTTCCTTAGAGGACT+TGG - chr4_1:44461072-44461091 None:intergenic 40.0%
!! AGTTAACGGTGATGGAACTA+TGG + chr4_1:44461115-44461134 Msa0549360:CDS 40.0%
! ACGAAGCAAAGGAACTCTTT+TGG + chr4_1:44461155-44461174 Msa0549360:CDS 40.0%
GGAAAGAAATCTTCAGAAGC+CGG + chr4_1:44461176-44461195 Msa0549360:CDS 40.0%
GAAACCTTGACAAAGTTTCC+GGG - chr4_1:44461206-44461225 None:intergenic 40.0%
TGACAGAAGCAAGTGTTCAA+TGG + chr4_1:44461243-44461262 Msa0549360:CDS 40.0%
CAAGCTTCGCAATAGATGAA+GGG - chr4_1:44461277-44461296 None:intergenic 40.0%
CTTCATCTATTGCGAAGCTT+GGG + chr4_1:44461276-44461295 Msa0549360:CDS 40.0%
GTCATAACAGACAGGATCTT+TGG - chr4_1:44461513-44461532 None:intergenic 40.0%
GATGATGAGTCATAACAGAC+AGG - chr4_1:44461521-44461540 None:intergenic 40.0%
!! GTTGGACCGTTATTGACTTA+AGG + chr4_1:44461658-44461677 Msa0549360:intron 40.0%
GACAGAGTTTGAATTTCCTC+AGG + chr4_1:44462277-44462296 Msa0549360:intron 40.0%
AATATCTTGAGTAGTGGCAG+AGG - chr4_1:44462415-44462434 None:intergenic 40.0%
AGAGCTAAGTAATTCTGCCA+AGG + chr4_1:44462473-44462492 Msa0549360:CDS 40.0%
! ATTCTGAGGGTTATGTTCCT+TGG - chr4_1:44462493-44462512 None:intergenic 40.0%
TTATCTGGAGATGAACCATC+TGG - chr4_1:44462594-44462613 None:intergenic 40.0%
GACAAAAACTTGCAGCTTCT+TGG + chr4_1:44462658-44462677 Msa0549360:CDS 40.0%
AGAAAAGGATGAGAGATTGG+TGG - chr4_1:44462700-44462719 None:intergenic 40.0%
TGTAGTTGAAACAGGAAGCT+TGG - chr4_1:44462748-44462767 None:intergenic 40.0%
! CGTCTTCTCTTGAATTTTCG+AGG - chr4_1:44462821-44462840 None:intergenic 40.0%
! TGTTTGGAATTAGCTACTGC+TGG - chr4_1:44462873-44462892 None:intergenic 40.0%
! AGTTCCTTGTAAGGCTTGTT+TGG - chr4_1:44462889-44462908 None:intergenic 40.0%
!! TAAAAGCGTCAACGATTGGT+TGG + chr4_1:44463136-44463155 Msa0549360:CDS 40.0%
! AACGATTGGTTGGATGAGAT+AGG + chr4_1:44463146-44463165 Msa0549360:CDS 40.0%
AGGATCGAGTAAAAATGAGG+GGG + chr4_1:44463166-44463185 Msa0549360:CDS 40.0%
! GCATTATTATTGTGGCTTGG+AGG + chr4_1:44463391-44463410 Msa0549360:three_prime_UTR 40.0%
! ATTGTGGCTTGGAGGAAATT+TGG + chr4_1:44463399-44463418 Msa0549360:three_prime_UTR 40.0%
TCTATACCTCAAACCCATGT+AGG - chr4_1:44463477-44463496 None:intergenic 40.0%
CCCAGTTGAACAATGGACAA+TGG - chr4_1:44459501-44459520 None:intergenic 45.0%
TTCCGATTCTTCGTGGTGTT+AGG + chr4_1:44459912-44459931 Msa0549360:CDS 45.0%
CACTTTCATTGGAGAGGACT+TGG - chr4_1:44460053-44460072 None:intergenic 45.0%
! GTCCTCTCCAATGAAAGTGT+TGG + chr4_1:44460054-44460073 Msa0549360:CDS 45.0%
CTCCAACACTTTCATTGGAG+AGG - chr4_1:44460059-44460078 None:intergenic 45.0%
AGTGGATAGGCTGATTGCTA+AGG + chr4_1:44460303-44460322 Msa0549360:CDS 45.0%
GATAGGCTGATTGCTAAGGT+GGG + chr4_1:44460307-44460326 Msa0549360:CDS 45.0%
ATAGGCTGATTGCTAAGGTG+GGG + chr4_1:44460308-44460327 Msa0549360:CDS 45.0%
GTTGTTCAAAAAGACAGGCC+TGG - chr4_1:44460824-44460843 None:intergenic 45.0%
AACACCAACCAAGTCCTCTA+AGG + chr4_1:44461061-44461080 Msa0549360:CDS 45.0%
! TCTTCCTTAGAGGACTTGGT+TGG - chr4_1:44461068-44461087 None:intergenic 45.0%
ACTTCCCGGAAACTTTGTCA+AGG + chr4_1:44461199-44461218 Msa0549360:CDS 45.0%
CCAAGCTTCGCAATAGATGA+AGG - chr4_1:44461278-44461297 None:intergenic 45.0%
CCTTCATCTATTGCGAAGCT+TGG + chr4_1:44461275-44461294 Msa0549360:CDS 45.0%
ATCTATTGCGAAGCTTGGGA+GGG + chr4_1:44461280-44461299 Msa0549360:CDS 45.0%
AGGTCAGACTCTTACTACTG+AGG - chr4_1:44462244-44462263 None:intergenic 45.0%
! CCATTTTACAACCGTTCCTG+AGG - chr4_1:44462296-44462315 None:intergenic 45.0%
CCTCAGGAACGGTTGTAAAA+TGG + chr4_1:44462293-44462312 Msa0549360:intron 45.0%
AAATCATCCGCGCACTATTC+AGG - chr4_1:44462548-44462567 None:intergenic 45.0%
TGGAGATGAACCATCTGGAA+TGG - chr4_1:44462589-44462608 None:intergenic 45.0%
! GGATGAGAGATTGGTGGATA+AGG - chr4_1:44462694-44462713 None:intergenic 45.0%
ACAGGAAGCTTGGACAATTG+AGG - chr4_1:44462738-44462757 None:intergenic 45.0%
GACGCTTCATTGAAAGCTCA+TGG + chr4_1:44462837-44462856 Msa0549360:CDS 45.0%
! ATTGCATCACCTTGTTTGCG+CGG - chr4_1:44462912-44462931 None:intergenic 45.0%
CCTTTAATCCACTCTTGGAG+TGG - chr4_1:44462966-44462985 None:intergenic 45.0%
!! CCACTCCAAGAGTGGATTAA+AGG + chr4_1:44462963-44462982 Msa0549360:CDS 45.0%
CTAAATTAACCGCCGCATCA+AGG - chr4_1:44462995-44463014 None:intergenic 45.0%
! TTGGACAGTGATGGAGACAT+TGG + chr4_1:44463071-44463090 Msa0549360:CDS 45.0%
!!! ATATTTTTTTAAAAGAAATT+GGG - chr4_1:44462358-44462377 None:intergenic 5.0%
!!! TATATTTTTTTAAAAGAAAT+TGG - chr4_1:44462359-44462378 None:intergenic 5.0%
AGCATTGTTCCAGCACTAGC+AGG + chr4_1:44459728-44459747 Msa0549360:CDS 50.0%
ATTGTTCCAGCACTAGCAGG+TGG + chr4_1:44459731-44459750 Msa0549360:CDS 50.0%
AAATCTCCACCTGCTAGTGC+TGG - chr4_1:44459740-44459759 None:intergenic 50.0%
ACACCACGAAGAATCGGAAC+AGG - chr4_1:44459911-44459930 None:intergenic 50.0%
GGCCTAACACCACGAAGAAT+CGG - chr4_1:44459917-44459936 None:intergenic 50.0%
GGATAGGCTGATTGCTAAGG+TGG + chr4_1:44460306-44460325 Msa0549360:CDS 50.0%
TAGGCTGATTGCTAAGGTGG+GGG + chr4_1:44460309-44460328 Msa0549360:CDS 50.0%
ACTGCAATTCTCTTCCCGAG+AGG - chr4_1:44460370-44460389 None:intergenic 50.0%
CTCGGGAAGAGAATTGCAGT+TGG + chr4_1:44460370-44460389 Msa0549360:CDS 50.0%
!! AACTTGGTGCTAAGGCGTTG+CGG + chr4_1:44460425-44460444 Msa0549360:CDS 50.0%
!! TAAGGCGTTGCGGAAAAGCT+GGG + chr4_1:44460435-44460454 Msa0549360:CDS 50.0%
GAAAAGCTGGGAAGGGAACA+TGG + chr4_1:44460447-44460466 Msa0549360:CDS 50.0%
TTCTGGTGTTCCAGACTCCT+AGG + chr4_1:44460985-44461004 Msa0549360:intron 50.0%
GACAAAGTTTCCGGGAAGTC+CGG - chr4_1:44461198-44461217 None:intergenic 50.0%
CATCTATTGCGAAGCTTGGG+AGG + chr4_1:44461279-44461298 Msa0549360:CDS 50.0%
AGCAACTGAGGCTATGCAAG+AGG + chr4_1:44461824-44461843 Msa0549360:CDS 50.0%
! ACACTAGCCTGAATAGTGCG+CGG + chr4_1:44462538-44462557 Msa0549360:CDS 50.0%
! GATTGGTGGATAAGGCAGCT+TGG - chr4_1:44462686-44462705 None:intergenic 50.0%
GCTTGGACAATTGAGGCTCT+CGG - chr4_1:44462731-44462750 None:intergenic 50.0%
TTTGCGCGGAGTTCCTTGTA+AGG - chr4_1:44462898-44462917 None:intergenic 50.0%
TCCAACAACCACTCCAAGAG+TGG + chr4_1:44462955-44462974 Msa0549360:CDS 50.0%
TCCACTCTTGGAGTGGTTGT+TGG - chr4_1:44462959-44462978 None:intergenic 50.0%
AGGAAATGACCTTGATGCGG+CGG + chr4_1:44462983-44463002 Msa0549360:CDS 50.0%
CGATCGCAATTGCAGCATGT+CGG - chr4_1:44463018-44463037 None:intergenic 50.0%
GGGGGAATCATGTCAGATAC+CGG + chr4_1:44463184-44463203 Msa0549360:CDS 50.0%
TCGCCTGTTCCGATTCTTCG+TGG + chr4_1:44459905-44459924 Msa0549360:CDS 55.0%
! GTGGTGTTAGGCCTGTTCCT+GGG + chr4_1:44459924-44459943 Msa0549360:CDS 55.0%
CAAGCATGTCTCCCAGGAAC+AGG - chr4_1:44459938-44459957 None:intergenic 55.0%
CCAACACAAGCATGTCTCCC+AGG - chr4_1:44459944-44459963 None:intergenic 55.0%
CCTGGGAGACATGCTTGTGT+TGG + chr4_1:44459941-44459960 Msa0549360:CDS 55.0%
GTTCGCGGAGTTAGTCCTCT+CGG + chr4_1:44460352-44460371 Msa0549360:CDS 55.0%
TTCGCGGAGTTAGTCCTCTC+GGG + chr4_1:44460353-44460372 Msa0549360:CDS 55.0%
!! CTAAGGCGTTGCGGAAAAGC+TGG + chr4_1:44460434-44460453 Msa0549360:CDS 55.0%
CGTTGCGGAAAAGCTGGGAA+GGG + chr4_1:44460440-44460459 Msa0549360:CDS 55.0%
TCTTCAGAAGCCGGACTTCC+CGG + chr4_1:44461185-44461204 Msa0549360:CDS 55.0%
GCACAGAGATGCAGCACAGA+TGG + chr4_1:44461800-44461819 Msa0549360:CDS 55.0%
AGCACAGATGGCAGCAACTG+AGG + chr4_1:44461812-44461831 Msa0549360:CDS 55.0%
CAAGGAACTCCGCGCAAACA+AGG + chr4_1:44462900-44462919 Msa0549360:CDS 55.0%
TGCAATTGCGATCGCGAGAC+TGG + chr4_1:44463024-44463043 Msa0549360:CDS 55.0%
! CGTGGTGTTAGGCCTGTTCC+TGG + chr4_1:44459923-44459942 Msa0549360:CDS 60.0%
GCTGATTGCTAAGGTGGGGG+TGG + chr4_1:44460312-44460331 Msa0549360:CDS 60.0%
GATTGCTAAGGTGGGGGTGG+TGG + chr4_1:44460315-44460334 Msa0549360:CDS 60.0%
!! TAAGGTGGGGGTGGTGGAGA+CGG + chr4_1:44460321-44460340 Msa0549360:CDS 60.0%
!! GAGACGGGAAAGGGTGTTCG+CGG + chr4_1:44460337-44460356 Msa0549360:CDS 60.0%
GCGTTGCGGAAAAGCTGGGA+AGG + chr4_1:44460439-44460458 Msa0549360:CDS 60.0%
!! AAGGTGGGGGTGGTGGAGAC+GGG + chr4_1:44460322-44460341 Msa0549360:CDS 65.0%
!! GGGGTGGTGGAGACGGGAAA+GGG + chr4_1:44460328-44460347 Msa0549360:CDS 65.0%
!! GGGGGTGGTGGAGACGGGAA+AGG + chr4_1:44460327-44460346 Msa0549360:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 44459133 44463611 44459133 ID=Msa0549360;Name=Msa0549360
chr4_1 mRNA 44459133 44463611 44459133 ID=Msa0549360-mRNA-1;Parent=Msa0549360;Name=Msa0549360-mRNA-1;_AED=0.10;_eAED=0.10;_QI=493|1|1|1|1|1|4|286|725
chr4_1 exon 44459133 44460546 44459133 ID=Msa0549360-mRNA-1:exon:11510;Parent=Msa0549360-mRNA-1
chr4_1 exon 44460999 44461301 44460999 ID=Msa0549360-mRNA-1:exon:11511;Parent=Msa0549360-mRNA-1
chr4_1 exon 44461789 44461880 44461789 ID=Msa0549360-mRNA-1:exon:11512;Parent=Msa0549360-mRNA-1
chr4_1 exon 44462464 44463611 44462464 ID=Msa0549360-mRNA-1:exon:11513;Parent=Msa0549360-mRNA-1
chr4_1 five_prime_UTR 44459133 44459625 44459133 ID=Msa0549360-mRNA-1:five_prime_utr;Parent=Msa0549360-mRNA-1
chr4_1 CDS 44459626 44460546 44459626 ID=Msa0549360-mRNA-1:cds;Parent=Msa0549360-mRNA-1
chr4_1 CDS 44460999 44461301 44460999 ID=Msa0549360-mRNA-1:cds;Parent=Msa0549360-mRNA-1
chr4_1 CDS 44461789 44461880 44461789 ID=Msa0549360-mRNA-1:cds;Parent=Msa0549360-mRNA-1
chr4_1 CDS 44462464 44463325 44462464 ID=Msa0549360-mRNA-1:cds;Parent=Msa0549360-mRNA-1
chr4_1 three_prime_UTR 44463326 44463611 44463326 ID=Msa0549360-mRNA-1:three_prime_utr;Parent=Msa0549360-mRNA-1
Gene Sequence

>Msa0549360

ATGGCAAATCTAGTTCCTGGGGTGCTACTAAAGTTAATGCAGCACATGAACACAGACATAAAAGTTGGTGGTGAACATAGATCATCATTGTTACAAGTTGTGAGCATTGTTCCAGCACTAGCAGGTGGAGATTTGTTTACAAATCAAGGCTTTTATGTTAAGGTTTCTGATTCATCACATGCTACTTATGTCTCTCTCCCTGATGAACATGATGATCTAATCCTTAGTGACAAGATTCAGTTAGGCCAGTTTGTTTTTGTTGATCGGTTTGAAGCTGCTTCGCCTGTTCCGATTCTTCGTGGTGTTAGGCCTGTTCCTGGGAGACATGCTTGTGTTGGAACACCTGAAGATATTGTTGCAACTAACTCACTTGGTTTTCTTAGCAATGCTTCTGAGGTTAAGGTTAAGAGGAATAGTGTTTGTTCCAAGTCCTCTCCAATGAAAGTGTTGGAGAATCATCAAGAACAAGTAGATAAGAAATCAATGGTTTTAGGTAGATGTAAATCTCAGACAGCAAAAGATTCTGTTGTTGATTTTGTGAAGAAGGAAAAGTTAACAAGATTAAAGTCATTGAATTCAAGAGCTATTGTTCCTTCTTCACCTACTAGTTGCTATTCTTTGCCTACTTCTTTTGAGAAATTCTCTAATGGAGTTAAGCAACAAGGAAATATCAATGGAGTGGATAGGCTGATTGCTAAGGTGGGGGTGGTGGAGACGGGAAAGGGTGTTCGCGGAGTTAGTCCTCTCGGGAAGAGAATTGCAGTTGGAAATTCAATCAGAAATTTAGTTCAAGGAATTGAACTTGGTGCTAAGGCGTTGCGGAAAAGCTGGGAAGGGAACATGGAAGTTAAGAATAATAAAGAGACATCCAAATCAAGGGCATCTTCTAAGTGTGATTCTAAGCCTGAATTTCGTAGCACAACTCCTAGGAAAAGTACATCGAGTGAGAAGTTTCCTTCTAAAGATTACGAGAGTAAGACACAAACACCAACCAAGTCCTCTAAGGAAGAAAACAAGATTCAAAAATCTATAAAGAAAGTTAACGGTGATGGAACTATGGAAGAACAAGAAAAGACAACGAAGCAAAGGAACTCTTTTGGAAAGAAATCTTCAGAAGCCGGACTTCCCGGAAACTTTGTCAAGGTTTCAGTAAATAGTAAAAAAGTGACAGAAGCAAGTGTTCAATGGACTTCACTCCCTTCATCTATTGCGAAGCTTGGGAGGGAAGTAATGAAGCACAGAGATGCAGCACAGATGGCAGCAACTGAGGCTATGCAAGAGGCTGCTACTGCTGATAGTTTGCTACAATGTCTTAGTGTGTATGCAGAGCTAAGTAATTCTGCCAAGGAACATAACCCTCAGAATACAATTGATCAGTTTTTAACGCTTCACACTAGCCTGAATAGTGCGCGGATGATTTCAGATTCCCTTTCTAAAACCATTCCAGATGGTTCATCTCCAGATAATGAAAGAATCACAACAGAAGAAGCACTAAAACTCAAATCAGATAGACAAAAACTTGCAGCTTCTTGGGTCCAAGCTGCCTTATCCACCAATCTCTCATCCTTTTCTGTTTATAACCGAGAGCCTCAATTGTCCAAGCTTCCTGTTTCAACTACAAGTAATTCTCAAAATCAAAAGATTGTTCTTGGAAGTAAACCAATTTTAGTCCTCGAAAATTCAAGAGAAGACGCTTCATTGAAAGCTCATGGAAAAACTCGTCCAGCAGTAGCTAATTCCAAACAAGCCTTACAAGGAACTCCGCGCAAACAAGGTGATGCAATATCAAATCCAAAAAAGCAACTAGTCCAACAACCACTCCAAGAGTGGATTAAAGGAAATGACCTTGATGCGGCGGTTAATTTAGCCGACATGCTGCAATTGCGATCGCGAGACTGGTTTTTATTGTTTGTTGAGAAATTTTTGGACAGTGATGGAGACATTGGTTTGTCAAACAATGGTCAAATAGCAGGCATGCTCACTCAACTTAAAAGCGTCAACGATTGGTTGGATGAGATAGGATCGAGTAAAAATGAGGGGGAATCATGTCAGATACCGGTAGAGACAATTGATAGACTCAGGAAGAAGATATATGAATATCTTCTTACACATGTTGAATCTGCTGCTGCTGCCCTTACTTCTGACTCACAATCATCAGAGATCAAAGGCAAAAAGTGA
Protein sequence

>Msa0549360

MANLVPGVLLKLMQHMNTDIKVGGEHRSSLLQVVSIVPALAGGDLFTNQGFYVKVSDSSHATYVSLPDEHDDLILSDKIQLGQFVFVDRFEAASPVPILRGVRPVPGRHACVGTPEDIVATNSLGFLSNASEVKVKRNSVCSKSSPMKVLENHQEQVDKKSMVLGRCKSQTAKDSVVDFVKKEKLTRLKSLNSRAIVPSSPTSCYSLPTSFEKFSNGVKQQGNINGVDRLIAKVGVVETGKGVRGVSPLGKRIAVGNSIRNLVQGIELGAKALRKSWEGNMEVKNNKETSKSRASSKCDSKPEFRSTTPRKSTSSEKFPSKDYESKTQTPTKSSKEENKIQKSIKKVNGDGTMEEQEKTTKQRNSFGKKSSEAGLPGNFVKVSVNSKKVTEASVQWTSLPSSIAKLGREVMKHRDAAQMAATEAMQEAATADSLLQCLSVYAELSNSAKEHNPQNTIDQFLTLHTSLNSARMISDSLSKTIPDGSSPDNERITTEEALKLKSDRQKLAASWVQAALSTNLSSFSVYNREPQLSKLPVSTTSNSQNQKIVLGSKPILVLENSREDASLKAHGKTRPAVANSKQALQGTPRKQGDAISNPKKQLVQQPLQEWIKGNDLDAAVNLADMLQLRSRDWFLLFVEKFLDSDGDIGLSNNGQIAGMLTQLKSVNDWLDEIGSSKNEGESCQIPVETIDRLRKKIYEYLLTHVESAAAALTSDSQSSEIKGKK*