AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0770330


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0770330 MtrunA17_Chr5g0447991 89.796 196 19 1 1 196 1 195 1.80e-76 228
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 69 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATTAAATAATGCTTATTT+TGG 0.135226 5_2:+40857432 None:intergenic
CTTTGTATGATTATGCATTT+TGG 0.148495 5_2:-40855640 Msa0770330:three_prime_UTR
TTCAGCTGAAGATTCTTCTT+TGG 0.248746 5_2:+40856327 None:intergenic
ACCTCAACAGTGGCCATAAT+TGG 0.274025 5_2:+40857171 None:intergenic
TTCTGTTGTTGAGGCTGTTC+AGG 0.288375 5_2:-40856125 Msa0770330:CDS
TCTGATGCTGCTGGTGTGAT+TGG 0.302513 5_2:+40856352 None:intergenic
GTCGAGGAAACAAAAGAAAA+TGG 0.336894 5_2:-40856151 Msa0770330:CDS
TCTATTGGGAGAATGAATTA+TGG 0.354702 5_2:+40857460 None:intergenic
ATTACTGAAAAGGTTACATT+AGG 0.365107 5_2:+40855669 None:intergenic
GTAAGCATGTTTGGCAATAA+TGG 0.367425 5_2:+40857379 None:intergenic
CTCAACAGGTTCCTTTGTCT+CGG 0.374352 5_2:+40856204 None:intergenic
TCTGTCTCAGATTCTGCAGC+TGG 0.400444 5_2:+40856097 None:intergenic
CTCAGCGTTAACCAAAGGTT+TGG 0.402620 5_2:+40856300 None:intergenic
TGGACTCTCAATGATTTCTT+CGG 0.404920 5_2:+40856372 None:intergenic
TTACATTAGGTAAACTCAAA+TGG 0.406842 5_2:+40855682 None:intergenic
GCTTACTAGCATTCAGTGAA+TGG 0.421591 5_2:-40857362 Msa0770330:five_prime_UTR
CCTTACTCACTCTTCTCAGT+TGG 0.426357 5_2:+40855890 None:intergenic
ATTTAGAATGGTTTATATAG+AGG 0.427250 5_2:+40857273 None:intergenic
AGCTGAAGAAGCCAAACCTT+TGG 0.430085 5_2:-40856311 Msa0770330:CDS
TGAGACAGAAAATGTTGTTA+AGG 0.433126 5_2:-40856083 Msa0770330:CDS
TGAATGCTAGTAAGCATGTT+TGG 0.437182 5_2:+40857370 None:intergenic
GGTAGCTGAGGCTGAAACTA+AGG 0.438659 5_2:-40856050 Msa0770330:CDS
ATGTAAATGTCAAATGACTA+AGG 0.440901 5_2:+40855554 None:intergenic
CCAACTGAGAAGAGTGAGTA+AGG 0.442677 5_2:-40855890 Msa0770330:exon
GGTTGAGAAAGAAGAAGCCT+TGG 0.446199 5_2:-40855981 Msa0770330:CDS
AACAAAGTTAAGATTGCTAT+AGG 0.461132 5_2:+40857216 None:intergenic
TCTTTGGTTTCTGATGCTGC+TGG 0.462673 5_2:+40856343 None:intergenic
CTTACTAGCATTCAGTGAAT+GGG 0.465281 5_2:-40857361 Msa0770330:five_prime_UTR
AAAGGAACATATTACTGAAA+AGG 0.467777 5_2:+40855659 None:intergenic
TACATTAGGTAAACTCAAAT+GGG 0.470364 5_2:+40855683 None:intergenic
TGGTTTATATAGAGGTTTGA+GGG 0.484870 5_2:+40857281 None:intergenic
TCCAATTATGGCCACTGTTG+AGG 0.502667 5_2:-40857172 Msa0770330:intron
AAGTGTTTAATTAGAGAGAG+TGG 0.506459 5_2:-40855845 Msa0770330:three_prime_UTR
TACAGCAGAGGAAACAAAGA+AGG 0.515632 5_2:-40856236 Msa0770330:CDS
AATTGAGAAGAGTGAAGAAG+AGG 0.516526 5_2:-40855915 Msa0770330:CDS
ACTCTCAATGATTTCTTCGG+TGG 0.520132 5_2:+40856375 None:intergenic
GGTTAACGCTGAGGCAAAAG+AGG 0.522231 5_2:-40856290 Msa0770330:CDS
ATGGTTTATATAGAGGTTTG+AGG 0.531817 5_2:+40857280 None:intergenic
GGAAGAACAAACCGAGACAA+AGG 0.535864 5_2:-40856215 Msa0770330:CDS
AGAAGAGAAAAGTGAGGAGA+AGG 0.537941 5_2:-40856002 Msa0770330:CDS
GTTGAGGAAACAAAAGAAAA+CGG 0.538839 5_2:-40856187 Msa0770330:CDS
TGTAAATGTCAAATGACTAA+GGG 0.557652 5_2:+40855555 None:intergenic
AGCCTTGGATGAAAAGAAAG+AGG 0.562181 5_2:-40855966 Msa0770330:CDS
TGATGAAAGAAATGAGGTGG+GGG 0.570922 5_2:+40857311 None:intergenic
CGAGACAAAGGAACCTGTTG+AGG 0.574462 5_2:-40856203 Msa0770330:CDS
TTTGCCTCAGCGTTAACCAA+AGG 0.580484 5_2:+40856295 None:intergenic
ATTTGACATTTACATAAACT+CGG 0.580684 5_2:-40855546 Msa0770330:three_prime_UTR
AGTTGATGAAAGAAATGAGG+TGG 0.608604 5_2:+40857308 None:intergenic
AAATGGTGATTCTGTTGTTG+AGG 0.613322 5_2:-40856134 Msa0770330:CDS
GTGGCAAAAGCTTAGAGATG+AGG 0.617154 5_2:+40857401 None:intergenic
ACTACTAGTAGCTAAATGCA+TGG 0.617396 5_2:-40855723 Msa0770330:three_prime_UTR
CTACTAGTAGCTAAATGCAT+GGG 0.617641 5_2:-40855722 Msa0770330:three_prime_UTR
TGTTGTTAAGGATGAGAATG+TGG 0.621253 5_2:-40856071 Msa0770330:CDS
GTTGATGAAAGAAATGAGGT+GGG 0.621816 5_2:+40857309 None:intergenic
TGATAACTGAGCAGTGTCGT+CGG 0.622323 5_2:+40856417 None:intergenic
CGGTGATTCAGTTAATGTCG+AGG 0.622446 5_2:-40856167 Msa0770330:CDS
ACAAGTTGATGAAAGAAATG+AGG 0.623867 5_2:+40857305 None:intergenic
CAAAATGCATAATCATACAA+AGG 0.624630 5_2:+40855641 None:intergenic
AGCCACAGAAGAGAAAAGTG+AGG 0.638283 5_2:-40856008 Msa0770330:CDS
AGCATGTTTGGCAATAATGG+TGG 0.642031 5_2:+40857382 None:intergenic
CAAACCTTTGGTTAACGCTG+AGG 0.649318 5_2:-40856299 Msa0770330:CDS
CAACTGAGAAGAGTGAGTAA+GGG 0.654993 5_2:-40855889 Msa0770330:exon
TAACGCTGAGGCAAAAGAGG+TGG 0.663853 5_2:-40856287 Msa0770330:CDS
TTACTAGCATTCAGTGAATG+GGG 0.664936 5_2:-40857360 Msa0770330:five_prime_UTR
GGATGAGAATGTGGTAGCTG+AGG 0.670593 5_2:-40856062 Msa0770330:CDS
GGTGGTAGAAGAAGTTCTTG+TGG 0.675484 5_2:-40856269 Msa0770330:CDS
TTGATGAAAGAAATGAGGTG+GGG 0.683097 5_2:+40857310 None:intergenic
GGCTGTGAAAGATACAGCAG+AGG 0.684792 5_2:-40856248 Msa0770330:CDS
TGGTAGAGTTACCTCAACAG+TGG 0.712754 5_2:+40857161 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTAAATAATGCTTATTT+TGG + chr5_2:40855583-40855602 None:intergenic 10.0%
!!! TTAATTTTGATGAAAAATAA+TGG + chr5_2:40855766-40855785 None:intergenic 10.0%
!! ATGGAAATATTAATTATAAT+TGG - chr5_2:40856228-40856247 Msa0770330:CDS 10.0%
!!! TTATTAAATAATGCTTATTT+TGG + chr5_2:40855583-40855602 None:intergenic 10.0%
!!! TTAATTTTGATGAAAAATAA+TGG + chr5_2:40855766-40855785 None:intergenic 10.0%
!! ATGGAAATATTAATTATAAT+TGG - chr5_2:40856228-40856247 Msa0770330:CDS 10.0%
!!! AAAAATAATGGAATTTAGAA+TGG + chr5_2:40855754-40855773 None:intergenic 15.0%
!!! AATCAATGTTTAAAATCAAA+TGG + chr5_2:40855923-40855942 None:intergenic 15.0%
!!! AATTTTGAGTCTTTTATTTT+TGG - chr5_2:40856334-40856353 Msa0770330:CDS 15.0%
!!! AAAAATAATGGAATTTAGAA+TGG + chr5_2:40855754-40855773 None:intergenic 15.0%
!!! AATCAATGTTTAAAATCAAA+TGG + chr5_2:40855923-40855942 None:intergenic 15.0%
!!! AATTTTGAGTCTTTTATTTT+TGG - chr5_2:40856334-40856353 Msa0770330:CDS 15.0%
!!! ATTTAGAATGGTTTATATAG+AGG + chr5_2:40855742-40855761 None:intergenic 20.0%
!!! TTTTCTTTGTATTCCAATTA+TGG - chr5_2:40855828-40855847 Msa0770330:three_prime_UTR 20.0%
!!! AATATTTTAAAGCATCTAGT+AGG - chr5_2:40855957-40855976 Msa0770330:CDS 20.0%
!! AAAAATTGAAGCTCTTAAAA+TGG - chr5_2:40856209-40856228 Msa0770330:CDS 20.0%
!! AGATAATTTATCCTTATGAA+CGG + chr5_2:40856372-40856391 None:intergenic 20.0%
!!! TTTACTTTTTAATCGAACTT+TGG + chr5_2:40856403-40856422 None:intergenic 20.0%
!!! GAACAAAATTTGTTTTAGAT+AGG - chr5_2:40856427-40856446 Msa0770330:CDS 20.0%
!! ATTTGACATTTACATAAACT+CGG - chr5_2:40857466-40857485 Msa0770330:five_prime_UTR 20.0%
!!! ATTTAGAATGGTTTATATAG+AGG + chr5_2:40855742-40855761 None:intergenic 20.0%
!!! TTTTCTTTGTATTCCAATTA+TGG - chr5_2:40855828-40855847 Msa0770330:three_prime_UTR 20.0%
!!! AATATTTTAAAGCATCTAGT+AGG - chr5_2:40855957-40855976 Msa0770330:CDS 20.0%
!! AAAAATTGAAGCTCTTAAAA+TGG - chr5_2:40856209-40856228 Msa0770330:CDS 20.0%
!! AGATAATTTATCCTTATGAA+CGG + chr5_2:40856372-40856391 None:intergenic 20.0%
!!! TTTACTTTTTAATCGAACTT+TGG + chr5_2:40856403-40856422 None:intergenic 20.0%
!!! GAACAAAATTTGTTTTAGAT+AGG - chr5_2:40856427-40856446 Msa0770330:CDS 20.0%
!! ATTTGACATTTACATAAACT+CGG - chr5_2:40857466-40857485 Msa0770330:five_prime_UTR 20.0%
!!! TTATTTTGGATCACTCTATT+GGG + chr5_2:40855569-40855588 None:intergenic 25.0%
! AACAAAGTTAAGATTGCTAT+AGG + chr5_2:40855799-40855818 None:intergenic 25.0%
! AAAAACCAAGTACTTGAAAT+TGG + chr5_2:40855874-40855893 None:intergenic 25.0%
! AATCACATTGTGATTCATAT+TGG - chr5_2:40856046-40856065 Msa0770330:CDS 25.0%
!!! TCAATATTTTAATGTCTCTC+CGG + chr5_2:40856125-40856144 None:intergenic 25.0%
!!! ACCTTTTTTAATGCATTAGA+TGG - chr5_2:40856147-40856166 Msa0770330:CDS 25.0%
! TCATATCTTCTTGAGTAAAT+AGG + chr5_2:40856182-40856201 None:intergenic 25.0%
! TTTCAATACTCTGACTAATA+TGG + chr5_2:40856306-40856325 None:intergenic 25.0%
! GATAATTTATCCTTATGAAC+GGG + chr5_2:40856371-40856390 None:intergenic 25.0%
!! CAAATGTTGTTTATTAGACA+AGG + chr5_2:40856520-40856539 None:intergenic 25.0%
! TACATTAGGTAAACTCAAAT+GGG + chr5_2:40857332-40857351 None:intergenic 25.0%
! TTACATTAGGTAAACTCAAA+TGG + chr5_2:40857333-40857352 None:intergenic 25.0%
! ATTACTGAAAAGGTTACATT+AGG + chr5_2:40857346-40857365 None:intergenic 25.0%
! AAAGGAACATATTACTGAAA+AGG + chr5_2:40857356-40857375 None:intergenic 25.0%
! CAAAATGCATAATCATACAA+AGG + chr5_2:40857374-40857393 None:intergenic 25.0%
!! CTTTGTATGATTATGCATTT+TGG - chr5_2:40857372-40857391 Msa0770330:five_prime_UTR 25.0%
! TGTAAATGTCAAATGACTAA+GGG + chr5_2:40857460-40857479 None:intergenic 25.0%
! ATGTAAATGTCAAATGACTA+AGG + chr5_2:40857461-40857480 None:intergenic 25.0%
!!! TTATTTTGGATCACTCTATT+GGG + chr5_2:40855569-40855588 None:intergenic 25.0%
! AACAAAGTTAAGATTGCTAT+AGG + chr5_2:40855799-40855818 None:intergenic 25.0%
! AAAAACCAAGTACTTGAAAT+TGG + chr5_2:40855874-40855893 None:intergenic 25.0%
! AATCACATTGTGATTCATAT+TGG - chr5_2:40856046-40856065 Msa0770330:CDS 25.0%
!!! TCAATATTTTAATGTCTCTC+CGG + chr5_2:40856125-40856144 None:intergenic 25.0%
!!! ACCTTTTTTAATGCATTAGA+TGG - chr5_2:40856147-40856166 Msa0770330:CDS 25.0%
! TCATATCTTCTTGAGTAAAT+AGG + chr5_2:40856182-40856201 None:intergenic 25.0%
! TTTCAATACTCTGACTAATA+TGG + chr5_2:40856306-40856325 None:intergenic 25.0%
! GATAATTTATCCTTATGAAC+GGG + chr5_2:40856371-40856390 None:intergenic 25.0%
!! CAAATGTTGTTTATTAGACA+AGG + chr5_2:40856520-40856539 None:intergenic 25.0%
! TACATTAGGTAAACTCAAAT+GGG + chr5_2:40857332-40857351 None:intergenic 25.0%
! TTACATTAGGTAAACTCAAA+TGG + chr5_2:40857333-40857352 None:intergenic 25.0%
! ATTACTGAAAAGGTTACATT+AGG + chr5_2:40857346-40857365 None:intergenic 25.0%
! AAAGGAACATATTACTGAAA+AGG + chr5_2:40857356-40857375 None:intergenic 25.0%
! CAAAATGCATAATCATACAA+AGG + chr5_2:40857374-40857393 None:intergenic 25.0%
!! CTTTGTATGATTATGCATTT+TGG - chr5_2:40857372-40857391 Msa0770330:five_prime_UTR 25.0%
! TGTAAATGTCAAATGACTAA+GGG + chr5_2:40857460-40857479 None:intergenic 25.0%
! ATGTAAATGTCAAATGACTA+AGG + chr5_2:40857461-40857480 None:intergenic 25.0%
TCTATTGGGAGAATGAATTA+TGG + chr5_2:40855555-40855574 None:intergenic 30.0%
!!! CTTATTTTGGATCACTCTAT+TGG + chr5_2:40855570-40855589 None:intergenic 30.0%
!! ACAAGTTGATGAAAGAAATG+AGG + chr5_2:40855710-40855729 None:intergenic 30.0%
TGGTTTATATAGAGGTTTGA+GGG + chr5_2:40855734-40855753 None:intergenic 30.0%
ATGGTTTATATAGAGGTTTG+AGG + chr5_2:40855735-40855754 None:intergenic 30.0%
!!! CACATGACATGTTTTAATCA+CGG - chr5_2:40856019-40856038 Msa0770330:CDS 30.0%
!!! ACATGACATGTTTTAATCAC+GGG - chr5_2:40856020-40856039 Msa0770330:CDS 30.0%
GCCATCTAATGCATTAAAAA+AGG + chr5_2:40856151-40856170 None:intergenic 30.0%
ATCTTCTTGAGTAAATAGGA+AGG + chr5_2:40856178-40856197 None:intergenic 30.0%
ATGTGCATGATTAATTCATG+TGG + chr5_2:40856272-40856291 None:intergenic 30.0%
!! TTTTCTTTTGTTTCCTCAAC+AGG + chr5_2:40856825-40856844 None:intergenic 30.0%
GTTGAGGAAACAAAAGAAAA+CGG - chr5_2:40856825-40856844 Msa0770330:intron 30.0%
TGAGACAGAAAATGTTGTTA+AGG - chr5_2:40856929-40856948 Msa0770330:intron 30.0%
! CTCAATTTTTGCATCATTGT+TGG + chr5_2:40857084-40857103 None:intergenic 30.0%
AAGTGTTTAATTAGAGAGAG+TGG - chr5_2:40857167-40857186 Msa0770330:intron 30.0%
TCTATTGGGAGAATGAATTA+TGG + chr5_2:40855555-40855574 None:intergenic 30.0%
!!! CTTATTTTGGATCACTCTAT+TGG + chr5_2:40855570-40855589 None:intergenic 30.0%
!! ACAAGTTGATGAAAGAAATG+AGG + chr5_2:40855710-40855729 None:intergenic 30.0%
TGGTTTATATAGAGGTTTGA+GGG + chr5_2:40855734-40855753 None:intergenic 30.0%
ATGGTTTATATAGAGGTTTG+AGG + chr5_2:40855735-40855754 None:intergenic 30.0%
!!! CACATGACATGTTTTAATCA+CGG - chr5_2:40856019-40856038 Msa0770330:CDS 30.0%
!!! ACATGACATGTTTTAATCAC+GGG - chr5_2:40856020-40856039 Msa0770330:CDS 30.0%
GCCATCTAATGCATTAAAAA+AGG + chr5_2:40856151-40856170 None:intergenic 30.0%
ATCTTCTTGAGTAAATAGGA+AGG + chr5_2:40856178-40856197 None:intergenic 30.0%
ATGTGCATGATTAATTCATG+TGG + chr5_2:40856272-40856291 None:intergenic 30.0%
!! TTTTCTTTTGTTTCCTCAAC+AGG + chr5_2:40856825-40856844 None:intergenic 30.0%
GTTGAGGAAACAAAAGAAAA+CGG - chr5_2:40856825-40856844 Msa0770330:intron 30.0%
TGAGACAGAAAATGTTGTTA+AGG - chr5_2:40856929-40856948 Msa0770330:intron 30.0%
! CTCAATTTTTGCATCATTGT+TGG + chr5_2:40857084-40857103 None:intergenic 30.0%
AAGTGTTTAATTAGAGAGAG+TGG - chr5_2:40857167-40857186 Msa0770330:intron 30.0%
GTAAGCATGTTTGGCAATAA+TGG + chr5_2:40855636-40855655 None:intergenic 35.0%
TGAATGCTAGTAAGCATGTT+TGG + chr5_2:40855645-40855664 None:intergenic 35.0%
CTTACTAGCATTCAGTGAAT+GGG - chr5_2:40855651-40855670 Msa0770330:three_prime_UTR 35.0%
TTACTAGCATTCAGTGAATG+GGG - chr5_2:40855652-40855671 Msa0770330:three_prime_UTR 35.0%
TTGATGAAAGAAATGAGGTG+GGG + chr5_2:40855705-40855724 None:intergenic 35.0%
! GTTGATGAAAGAAATGAGGT+GGG + chr5_2:40855706-40855725 None:intergenic 35.0%
!! AGTTGATGAAAGAAATGAGG+TGG + chr5_2:40855707-40855726 None:intergenic 35.0%
! CTCTACCAATTTCAAGTACT+TGG - chr5_2:40855866-40855885 Msa0770330:three_prime_UTR 35.0%
CGTGATTAAAACATGTCATG+TGG + chr5_2:40856021-40856040 None:intergenic 35.0%
ATTTATCCTTATGAACGGGA+GGG + chr5_2:40856367-40856386 None:intergenic 35.0%
AATTTATCCTTATGAACGGG+AGG + chr5_2:40856368-40856387 None:intergenic 35.0%
TGATCTGAATATGATTCTGC+AGG - chr5_2:40856545-40856564 Msa0770330:intron 35.0%
TGGACTCTCAATGATTTCTT+CGG + chr5_2:40856643-40856662 None:intergenic 35.0%
TTCAGCTGAAGATTCTTCTT+TGG + chr5_2:40856688-40856707 None:intergenic 35.0%
GTCGAGGAAACAAAAGAAAA+TGG - chr5_2:40856861-40856880 Msa0770330:intron 35.0%
AAATGGTGATTCTGTTGTTG+AGG - chr5_2:40856878-40856897 Msa0770330:intron 35.0%
TGTTGTTAAGGATGAGAATG+TGG - chr5_2:40856941-40856960 Msa0770330:intron 35.0%
! TTCCTCTTTCTTTTCATCCA+AGG + chr5_2:40857051-40857070 None:intergenic 35.0%
AATTGAGAAGAGTGAAGAAG+AGG - chr5_2:40857097-40857116 Msa0770330:intron 35.0%
ACTACTAGTAGCTAAATGCA+TGG - chr5_2:40857289-40857308 Msa0770330:five_prime_UTR 35.0%
CTACTAGTAGCTAAATGCAT+GGG - chr5_2:40857290-40857309 Msa0770330:five_prime_UTR 35.0%
GTAAGCATGTTTGGCAATAA+TGG + chr5_2:40855636-40855655 None:intergenic 35.0%
TGAATGCTAGTAAGCATGTT+TGG + chr5_2:40855645-40855664 None:intergenic 35.0%
CTTACTAGCATTCAGTGAAT+GGG - chr5_2:40855651-40855670 Msa0770330:three_prime_UTR 35.0%
TTACTAGCATTCAGTGAATG+GGG - chr5_2:40855652-40855671 Msa0770330:three_prime_UTR 35.0%
TTGATGAAAGAAATGAGGTG+GGG + chr5_2:40855705-40855724 None:intergenic 35.0%
! GTTGATGAAAGAAATGAGGT+GGG + chr5_2:40855706-40855725 None:intergenic 35.0%
!! AGTTGATGAAAGAAATGAGG+TGG + chr5_2:40855707-40855726 None:intergenic 35.0%
! CTCTACCAATTTCAAGTACT+TGG - chr5_2:40855866-40855885 Msa0770330:three_prime_UTR 35.0%
CGTGATTAAAACATGTCATG+TGG + chr5_2:40856021-40856040 None:intergenic 35.0%
ATTTATCCTTATGAACGGGA+GGG + chr5_2:40856367-40856386 None:intergenic 35.0%
AATTTATCCTTATGAACGGG+AGG + chr5_2:40856368-40856387 None:intergenic 35.0%
TGATCTGAATATGATTCTGC+AGG - chr5_2:40856545-40856564 Msa0770330:intron 35.0%
TGGACTCTCAATGATTTCTT+CGG + chr5_2:40856643-40856662 None:intergenic 35.0%
TTCAGCTGAAGATTCTTCTT+TGG + chr5_2:40856688-40856707 None:intergenic 35.0%
GTCGAGGAAACAAAAGAAAA+TGG - chr5_2:40856861-40856880 Msa0770330:intron 35.0%
AAATGGTGATTCTGTTGTTG+AGG - chr5_2:40856878-40856897 Msa0770330:intron 35.0%
TGTTGTTAAGGATGAGAATG+TGG - chr5_2:40856941-40856960 Msa0770330:intron 35.0%
! TTCCTCTTTCTTTTCATCCA+AGG + chr5_2:40857051-40857070 None:intergenic 35.0%
AATTGAGAAGAGTGAAGAAG+AGG - chr5_2:40857097-40857116 Msa0770330:intron 35.0%
ACTACTAGTAGCTAAATGCA+TGG - chr5_2:40857289-40857308 Msa0770330:five_prime_UTR 35.0%
CTACTAGTAGCTAAATGCAT+GGG - chr5_2:40857290-40857309 Msa0770330:five_prime_UTR 35.0%
AGCATGTTTGGCAATAATGG+TGG + chr5_2:40855633-40855652 None:intergenic 40.0%
GCTTACTAGCATTCAGTGAA+TGG - chr5_2:40855650-40855669 Msa0770330:three_prime_UTR 40.0%
TGATGAAAGAAATGAGGTGG+GGG + chr5_2:40855704-40855723 None:intergenic 40.0%
TGTCATGTGGAAGTAATGCA+GGG + chr5_2:40856008-40856027 None:intergenic 40.0%
ATGTCATGTGGAAGTAATGC+AGG + chr5_2:40856009-40856028 None:intergenic 40.0%
CTCTGACTAATATGGACACA+TGG + chr5_2:40856298-40856317 None:intergenic 40.0%
ACTCTCAATGATTTCTTCGG+TGG + chr5_2:40856640-40856659 None:intergenic 40.0%
TACAGCAGAGGAAACAAAGA+AGG - chr5_2:40856776-40856795 Msa0770330:intron 40.0%
AGAAGAGAAAAGTGAGGAGA+AGG - chr5_2:40857010-40857029 Msa0770330:intron 40.0%
AGCCTTGGATGAAAAGAAAG+AGG - chr5_2:40857046-40857065 Msa0770330:intron 40.0%
CAACTGAGAAGAGTGAGTAA+GGG - chr5_2:40857123-40857142 Msa0770330:intron 40.0%
AGCATGTTTGGCAATAATGG+TGG + chr5_2:40855633-40855652 None:intergenic 40.0%
GCTTACTAGCATTCAGTGAA+TGG - chr5_2:40855650-40855669 Msa0770330:three_prime_UTR 40.0%
TGATGAAAGAAATGAGGTGG+GGG + chr5_2:40855704-40855723 None:intergenic 40.0%
TGTCATGTGGAAGTAATGCA+GGG + chr5_2:40856008-40856027 None:intergenic 40.0%
ATGTCATGTGGAAGTAATGC+AGG + chr5_2:40856009-40856028 None:intergenic 40.0%
CTCTGACTAATATGGACACA+TGG + chr5_2:40856298-40856317 None:intergenic 40.0%
ACTCTCAATGATTTCTTCGG+TGG + chr5_2:40856640-40856659 None:intergenic 40.0%
TACAGCAGAGGAAACAAAGA+AGG - chr5_2:40856776-40856795 Msa0770330:intron 40.0%
AGAAGAGAAAAGTGAGGAGA+AGG - chr5_2:40857010-40857029 Msa0770330:intron 40.0%
AGCCTTGGATGAAAAGAAAG+AGG - chr5_2:40857046-40857065 Msa0770330:intron 40.0%
CAACTGAGAAGAGTGAGTAA+GGG - chr5_2:40857123-40857142 Msa0770330:intron 40.0%
GTGGCAAAAGCTTAGAGATG+AGG + chr5_2:40855614-40855633 None:intergenic 45.0%
TCCAATTATGGCCACTGTTG+AGG - chr5_2:40855840-40855859 Msa0770330:three_prime_UTR 45.0%
ACCTCAACAGTGGCCATAAT+TGG + chr5_2:40855844-40855863 None:intergenic 45.0%
TGGTAGAGTTACCTCAACAG+TGG + chr5_2:40855854-40855873 None:intergenic 45.0%
AAATCGCGTCACGTTGTAAC+CGG - chr5_2:40856103-40856122 Msa0770330:CDS 45.0%
TGATAACTGAGCAGTGTCGT+CGG + chr5_2:40856598-40856617 None:intergenic 45.0%
! TCTTTGGTTTCTGATGCTGC+TGG + chr5_2:40856672-40856691 None:intergenic 45.0%
AGCTGAAGAAGCCAAACCTT+TGG - chr5_2:40856701-40856720 Msa0770330:intron 45.0%
CTCAGCGTTAACCAAAGGTT+TGG + chr5_2:40856715-40856734 None:intergenic 45.0%
CAAACCTTTGGTTAACGCTG+AGG - chr5_2:40856713-40856732 Msa0770330:intron 45.0%
TTTGCCTCAGCGTTAACCAA+AGG + chr5_2:40856720-40856739 None:intergenic 45.0%
GGTGGTAGAAGAAGTTCTTG+TGG - chr5_2:40856743-40856762 Msa0770330:intron 45.0%
GGAAGAACAAACCGAGACAA+AGG - chr5_2:40856797-40856816 Msa0770330:intron 45.0%
CTCAACAGGTTCCTTTGTCT+CGG + chr5_2:40856811-40856830 None:intergenic 45.0%
CGGTGATTCAGTTAATGTCG+AGG - chr5_2:40856845-40856864 Msa0770330:intron 45.0%
TTCTGTTGTTGAGGCTGTTC+AGG - chr5_2:40856887-40856906 Msa0770330:intron 45.0%
AGCCACAGAAGAGAAAAGTG+AGG - chr5_2:40857004-40857023 Msa0770330:intron 45.0%
!! CTCCTCACTTTTCTCTTCTG+TGG + chr5_2:40857009-40857028 None:intergenic 45.0%
GGTTGAGAAAGAAGAAGCCT+TGG - chr5_2:40857031-40857050 Msa0770330:intron 45.0%
CCTTACTCACTCTTCTCAGT+TGG + chr5_2:40857125-40857144 None:intergenic 45.0%
CCAACTGAGAAGAGTGAGTA+AGG - chr5_2:40857122-40857141 Msa0770330:intron 45.0%
GTGGCAAAAGCTTAGAGATG+AGG + chr5_2:40855614-40855633 None:intergenic 45.0%
TCCAATTATGGCCACTGTTG+AGG - chr5_2:40855840-40855859 Msa0770330:three_prime_UTR 45.0%
ACCTCAACAGTGGCCATAAT+TGG + chr5_2:40855844-40855863 None:intergenic 45.0%
TGGTAGAGTTACCTCAACAG+TGG + chr5_2:40855854-40855873 None:intergenic 45.0%
AAATCGCGTCACGTTGTAAC+CGG - chr5_2:40856103-40856122 Msa0770330:CDS 45.0%
TGATAACTGAGCAGTGTCGT+CGG + chr5_2:40856598-40856617 None:intergenic 45.0%
! TCTTTGGTTTCTGATGCTGC+TGG + chr5_2:40856672-40856691 None:intergenic 45.0%
AGCTGAAGAAGCCAAACCTT+TGG - chr5_2:40856701-40856720 Msa0770330:intron 45.0%
CTCAGCGTTAACCAAAGGTT+TGG + chr5_2:40856715-40856734 None:intergenic 45.0%
CAAACCTTTGGTTAACGCTG+AGG - chr5_2:40856713-40856732 Msa0770330:intron 45.0%
TTTGCCTCAGCGTTAACCAA+AGG + chr5_2:40856720-40856739 None:intergenic 45.0%
GGTGGTAGAAGAAGTTCTTG+TGG - chr5_2:40856743-40856762 Msa0770330:intron 45.0%
GGAAGAACAAACCGAGACAA+AGG - chr5_2:40856797-40856816 Msa0770330:intron 45.0%
CTCAACAGGTTCCTTTGTCT+CGG + chr5_2:40856811-40856830 None:intergenic 45.0%
CGGTGATTCAGTTAATGTCG+AGG - chr5_2:40856845-40856864 Msa0770330:intron 45.0%
TTCTGTTGTTGAGGCTGTTC+AGG - chr5_2:40856887-40856906 Msa0770330:intron 45.0%
AGCCACAGAAGAGAAAAGTG+AGG - chr5_2:40857004-40857023 Msa0770330:intron 45.0%
!! CTCCTCACTTTTCTCTTCTG+TGG + chr5_2:40857009-40857028 None:intergenic 45.0%
GGTTGAGAAAGAAGAAGCCT+TGG - chr5_2:40857031-40857050 Msa0770330:intron 45.0%
CCTTACTCACTCTTCTCAGT+TGG + chr5_2:40857125-40857144 None:intergenic 45.0%
CCAACTGAGAAGAGTGAGTA+AGG - chr5_2:40857122-40857141 Msa0770330:intron 45.0%
GGGGGCAGTTCAAGAATCTT+GGG + chr5_2:40855686-40855705 None:intergenic 50.0%
TGGGGGCAGTTCAAGAATCT+TGG + chr5_2:40855687-40855706 None:intergenic 50.0%
CTCAAACCCTCCCGTTCATA+AGG - chr5_2:40856358-40856377 Msa0770330:CDS 50.0%
TCTGATGCTGCTGGTGTGAT+TGG + chr5_2:40856663-40856682 None:intergenic 50.0%
GGTTAACGCTGAGGCAAAAG+AGG - chr5_2:40856722-40856741 Msa0770330:intron 50.0%
TAACGCTGAGGCAAAAGAGG+TGG - chr5_2:40856725-40856744 Msa0770330:intron 50.0%
GGCTGTGAAAGATACAGCAG+AGG - chr5_2:40856764-40856783 Msa0770330:intron 50.0%
CGAGACAAAGGAACCTGTTG+AGG - chr5_2:40856809-40856828 Msa0770330:intron 50.0%
TCTGTCTCAGATTCTGCAGC+TGG + chr5_2:40856918-40856937 None:intergenic 50.0%
GGATGAGAATGTGGTAGCTG+AGG - chr5_2:40856950-40856969 Msa0770330:intron 50.0%
GGTAGCTGAGGCTGAAACTA+AGG - chr5_2:40856962-40856981 Msa0770330:intron 50.0%
GGGGGCAGTTCAAGAATCTT+GGG + chr5_2:40855686-40855705 None:intergenic 50.0%
TGGGGGCAGTTCAAGAATCT+TGG + chr5_2:40855687-40855706 None:intergenic 50.0%
CTCAAACCCTCCCGTTCATA+AGG - chr5_2:40856358-40856377 Msa0770330:CDS 50.0%
TCTGATGCTGCTGGTGTGAT+TGG + chr5_2:40856663-40856682 None:intergenic 50.0%
GGTTAACGCTGAGGCAAAAG+AGG - chr5_2:40856722-40856741 Msa0770330:intron 50.0%
TAACGCTGAGGCAAAAGAGG+TGG - chr5_2:40856725-40856744 Msa0770330:intron 50.0%
GGCTGTGAAAGATACAGCAG+AGG - chr5_2:40856764-40856783 Msa0770330:intron 50.0%
CGAGACAAAGGAACCTGTTG+AGG - chr5_2:40856809-40856828 Msa0770330:intron 50.0%
TCTGTCTCAGATTCTGCAGC+TGG + chr5_2:40856918-40856937 None:intergenic 50.0%
GGATGAGAATGTGGTAGCTG+AGG - chr5_2:40856950-40856969 Msa0770330:intron 50.0%
GGTAGCTGAGGCTGAAACTA+AGG - chr5_2:40856962-40856981 Msa0770330:intron 50.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 40855539 40857495 40855539 ID=Msa0770330;Name=Msa0770330
chr5_2 mRNA 40855539 40857495 40855539 ID=Msa0770330-mRNA-1;Parent=Msa0770330;Name=Msa0770330-mRNA-1;_AED=0.00;_eAED=0.00;_QI=308|1|1|1|1|1|2|353|196
chr5_2 exon 40855539 40856467 40855539 ID=Msa0770330-mRNA-1:exon:12936;Parent=Msa0770330-mRNA-1
chr5_2 exon 40857173 40857495 40857173 ID=Msa0770330-mRNA-1:exon:12935;Parent=Msa0770330-mRNA-1
chr5_2 five_prime_UTR 40857188 40857495 40857188 ID=Msa0770330-mRNA-1:five_prime_utr;Parent=Msa0770330-mRNA-1
chr5_2 CDS 40857173 40857187 40857173 ID=Msa0770330-mRNA-1:cds;Parent=Msa0770330-mRNA-1
chr5_2 CDS 40855892 40856467 40855892 ID=Msa0770330-mRNA-1:cds;Parent=Msa0770330-mRNA-1
chr5_2 three_prime_UTR 40855539 40855891 40855539 ID=Msa0770330-mRNA-1:three_prime_utr;Parent=Msa0770330-mRNA-1
Gene Sequence

>Msa0770330

ATGGCCACTGTTGAGGTTGTATCATCAGCACAGACTGCACTCTCCGACGACACTGCTCAGTTATCATTGAAATCTGATGAAAAAACCACCGAAGAAATCATTGAGAGTCCAATCACACCAGCAGCATCAGAAACCAAAGAAGAATCTTCAGCTGAAGAAGCCAAACCTTTGGTTAACGCTGAGGCAAAAGAGGTGGTAGAAGAAGTTCTTGTGGCTGTGAAAGATACAGCAGAGGAAACAAAGAAGGAAGAACAAACCGAGACAAAGGAACCTGTTGAGGAAACAAAAGAAAACGGTGATTCAGTTAATGTCGAGGAAACAAAAGAAAATGGTGATTCTGTTGTTGAGGCTGTTCAGGAAAAACCAGCTGCAGAATCTGAGACAGAAAATGTTGTTAAGGATGAGAATGTGGTAGCTGAGGCTGAAACTAAGGACAATGTTAAGACAGAAGAAGCCACAGAAGAGAAAAGTGAGGAGAAGGTTGAGAAAGAAGAAGCCTTGGATGAAAAGAAAGAGGAAGAAGTGATCACCAACAATGATGCAAAAATTGAGAAGAGTGAAGAAGAGGCTCCAACTGAGAAGAGTGAGTAA

Protein sequence

>Msa0770330

MATVEVVSSAQTALSDDTAQLSLKSDEKTTEEIIESPITPAASETKEESSAEEAKPLVNAEAKEVVEEVLVAVKDTAEETKKEEQTETKEPVEETKENGDSVNVEETKENGDSVVEAVQEKPAAESETENVVKDENVVAEAETKDNVKTEEATEEKSEEKVEKEEALDEKKEEEVITNNDAKIEKSEEEAPTEKSE*