Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1381540 | XP_013461948.1 | 91.295 | 471 | 11 | 2 | 1 | 442 | 1 | 470 | 0.0 | 809 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1381540 | sp|Q8L7A0|TAUE3_ARATH | 69.574 | 470 | 104 | 5 | 6 | 441 | 11 | 475 | 0.0 | 589 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1381540 | G7ZWM6 | 91.295 | 471 | 11 | 2 | 1 | 442 | 1 | 470 | 0.0 | 809 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1381540 | Msa1387590 | 0.978601 | 3.626260e-146 | -8.615850e-47 |
| Msa1381540 | Msa1445400 | -0.801382 | 9.243288e-49 | -8.615850e-47 |
| Msa1381540 | Msa1459760 | -0.808265 | 3.371144e-50 | -8.615850e-47 |
| Msa0743120 | Msa1381540 | -0.801693 | 7.980975e-49 | -8.615850e-47 |
| Msa0140510 | Msa1381540 | -0.805034 | 1.622322e-49 | -8.615850e-47 |
| Msa0183010 | Msa1381540 | -0.834166 | 3.507046e-56 | -8.615850e-47 |
| Msa0230640 | Msa1381540 | -0.825111 | 5.602592e-54 | -8.615850e-47 |
| Msa1224580 | Msa1381540 | -0.806858 | 6.704987e-50 | -8.615850e-47 |
| Msa0387280 | Msa1381540 | 0.801671 | 8.066907e-49 | -8.615850e-47 |
| Msa1029080 | Msa1381540 | -0.803112 | 4.072879e-49 | -8.615850e-47 |
| Msa1171730 | Msa1381540 | 0.811337 | 7.365219e-51 | -8.615850e-47 |
| Msa1177780 | Msa1381540 | 0.805204 | 1.494709e-49 | -8.615850e-47 |
| Msa1208650 | Msa1381540 | -0.822680 | 2.081194e-53 | -8.615850e-47 |
| Msa0521620 | Msa1381540 | 0.981404 | 1.656992e-152 | -8.615850e-47 |
| Msa0521740 | Msa1381540 | 0.815682 | 8.156482e-52 | -8.615850e-47 |
| Msa0862800 | Msa1381540 | -0.827663 | 1.381175e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1381540 | MtrunA17_Chr3g0139541 | 91.295 | 471 | 11 | 2 | 1 | 442 | 1 | 470 | 0.0 | 809 |
| Msa1381540 | MtrunA17_Chr5g0403901 | 59.695 | 459 | 146 | 5 | 11 | 438 | 18 | 468 | 1.56e-166 | 476 |
| Msa1381540 | MtrunA17_Chr8g0373471 | 59.770 | 435 | 141 | 3 | 41 | 442 | 36 | 469 | 3.41e-164 | 471 |
| Msa1381540 | MtrunA17_Chr8g0380211 | 59.709 | 412 | 129 | 2 | 67 | 441 | 67 | 478 | 4.64e-145 | 422 |
| Msa1381540 | MtrunA17_Chr1g0157751 | 50.318 | 471 | 180 | 4 | 6 | 438 | 1 | 455 | 3.79e-144 | 419 |
| Msa1381540 | MtrunA17_Chr8g0380191 | 61.465 | 314 | 114 | 2 | 127 | 440 | 10 | 316 | 1.16e-120 | 354 |
| Msa1381540 | MtrunA17_Chr7g0265481 | 49.539 | 434 | 176 | 5 | 44 | 438 | 30 | 459 | 2.66e-118 | 353 |
| Msa1381540 | MtrunA17_Chr1g0179621 | 49.157 | 415 | 171 | 4 | 64 | 438 | 48 | 462 | 4.43e-111 | 335 |
| Msa1381540 | MtrunA17_Chr3g0139621 | 72.269 | 119 | 11 | 1 | 273 | 369 | 27 | 145 | 2.00e-39 | 139 |
| Msa1381540 | MtrunA17_Chr2g0280401 | 26.753 | 385 | 226 | 6 | 105 | 438 | 87 | 466 | 8.04e-37 | 140 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1381540 | AT2G25737.1 | 69.574 | 470 | 104 | 5 | 6 | 441 | 11 | 475 | 0.0 | 589 |
| Msa1381540 | AT2G25737.2 | 65.027 | 366 | 89 | 5 | 6 | 337 | 11 | 371 | 8.09e-145 | 418 |
| Msa1381540 | AT2G36630.1 | 47.229 | 415 | 181 | 6 | 62 | 438 | 42 | 456 | 1.07e-108 | 329 |
| Msa1381540 | AT1G11540.2 | 32.172 | 373 | 214 | 8 | 104 | 438 | 79 | 450 | 2.96e-39 | 147 |
| Msa1381540 | AT1G11540.1 | 32.337 | 368 | 210 | 8 | 109 | 438 | 1 | 367 | 3.46e-39 | 145 |
| Msa1381540 | AT1G61740.1 | 28.293 | 410 | 249 | 6 | 72 | 438 | 51 | 458 | 1.76e-35 | 137 |
| Msa1381540 | AT4G21250.1 | 29.557 | 406 | 239 | 5 | 73 | 438 | 51 | 449 | 5.60e-31 | 124 |
| Msa1381540 | AT4G21260.1 | 26.157 | 432 | 243 | 13 | 6 | 419 | 1 | 374 | 1.23e-29 | 119 |
Find 141 sgRNAs with CRISPR-Local
Find 269 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAAGCTGTTGATTTCTTA+TGG | 0.163433 | tig0020435:-136617 | Msa1381540:CDS |
| CCTATGCTCAGTCTTATTAT+TGG | 0.208963 | tig0020435:-136240 | Msa1381540:CDS |
| TCAACAAAAGCATTCTTAAA+AGG | 0.210652 | tig0020435:-134807 | Msa1381540:CDS |
| GATTGCCGATCATGAATATA+TGG | 0.212904 | tig0020435:-133155 | Msa1381540:CDS |
| AATAAAAGAACACAATAATT+TGG | 0.213975 | tig0020435:+137087 | None:intergenic |
| CTACTTGCTGAAACGATTTC+CGG | 0.245240 | tig0020435:-133465 | Msa1381540:CDS |
| GAGATAGCAGTCGATGATTT+AGG | 0.245570 | tig0020435:+136210 | None:intergenic |
| TATATAACAAGCTAAATTAT+TGG | 0.256353 | tig0020435:+132818 | None:intergenic |
| CACATGCATCTTAATCTAAA+TGG | 0.262348 | tig0020435:+132901 | None:intergenic |
| CGGTATAATCGGTGGATTGC+TGG | 0.273239 | tig0020435:-133710 | Msa1381540:CDS |
| TGAAAATGAGATCCATATTA+TGG | 0.284097 | tig0020435:-136764 | Msa1381540:CDS |
| TGGAGTTGGCATTTCAAATA+TGG | 0.298396 | tig0020435:-133185 | Msa1381540:CDS |
| TAAGGAAACCATAATGAAAA+AGG | 0.303076 | tig0020435:-134769 | Msa1381540:intron |
| AGAAGGCTGATCATCCTATT+TGG | 0.303986 | tig0020435:-133271 | Msa1381540:CDS |
| TAGCAACATCATCCATAATA+TGG | 0.305835 | tig0020435:+136752 | None:intergenic |
| ACTAGGAGGCGGATTTGTTA+TGG | 0.306710 | tig0020435:-133686 | Msa1381540:CDS |
| GTATTAGTAACATTAAAATT+TGG | 0.315047 | tig0020435:+136672 | None:intergenic |
| AAACGATTTCCGGTTCCTTA+TGG | 0.322506 | tig0020435:-133455 | Msa1381540:intron |
| TTGGGTACTGAACTTGTTAC+AGG | 0.324749 | tig0020435:-134022 | Msa1381540:intron |
| ATGTTGCAGGAAATGGAATT+TGG | 0.334185 | tig0020435:-136351 | Msa1381540:intron |
| TTTATCAGTGCAATCTCATT+AGG | 0.334595 | tig0020435:-133208 | Msa1381540:CDS |
| CTACATGTTCTGCAGCATAT+TGG | 0.346236 | tig0020435:-134041 | Msa1381540:CDS |
| TACATGTTCTGCAGCATATT+GGG | 0.353310 | tig0020435:-134040 | Msa1381540:CDS |
| TCAACGTTGTATTTCCTGAT+TGG | 0.361915 | tig0020435:-134967 | Msa1381540:CDS |
| AGGGCTTGAGACATGGAATA+AGG | 0.370713 | tig0020435:-134787 | Msa1381540:CDS |
| GCAGTTACCCCAACTGCAAT+TGG | 0.371672 | tig0020435:+133847 | None:intergenic |
| TTATTTCTTATCCTGATAGA+AGG | 0.371902 | tig0020435:-133006 | Msa1381540:three_prime_UTR |
| CTAGTCATCTATTGTGTGTT+TGG | 0.378183 | tig0020435:-133742 | Msa1381540:CDS |
| GTTTGGTGAAGAAGAAAATT+CGG | 0.390433 | tig0020435:+136883 | None:intergenic |
| GGTGGCTACTATTGCAGCCT+TGG | 0.391624 | tig0020435:-133311 | Msa1381540:CDS |
| CTCATCATCTTTATTCTAGC+TGG | 0.396070 | tig0020435:-133238 | Msa1381540:CDS |
| ATAGCATGAGGGAGGTTTAC+CGG | 0.404366 | tig0020435:-132735 | Msa1381540:three_prime_UTR |
| ATGAAAATTTGACAATAATC+CGG | 0.404677 | tig0020435:-132852 | Msa1381540:three_prime_UTR |
| CTATTGTGTGTTTGGTGTGC+TGG | 0.405285 | tig0020435:-133734 | Msa1381540:CDS |
| CTAGGAGGCGGATTTGTTAT+GGG | 0.410693 | tig0020435:-133685 | Msa1381540:CDS |
| ACCATTTGATTCTTGTCTCC+TGG | 0.412224 | tig0020435:+134581 | None:intergenic |
| GAATATAAAGCTCTTCCAAC+TGG | 0.413552 | tig0020435:-134458 | Msa1381540:CDS |
| AATATAGTGACAAGCCAATC+AGG | 0.423808 | tig0020435:+134953 | None:intergenic |
| TGGATGATGTTGCTATTGTT+TGG | 0.424677 | tig0020435:-136744 | Msa1381540:CDS |
| TGCAGATCCCAATTGCAGTT+GGG | 0.427147 | tig0020435:-133855 | Msa1381540:intron |
| GCCAACTTAGCTCTTGGCCT+CGG | 0.430451 | tig0020435:+133038 | None:intergenic |
| TGAGAGATGCTCTTCCAAAT+AGG | 0.430670 | tig0020435:+133257 | None:intergenic |
| TCCACAGAAAATAAAGGAGC+AGG | 0.431843 | tig0020435:+136950 | None:intergenic |
| ACCAAGACTCGTGTTCTGTT+TGG | 0.434467 | tig0020435:+136866 | None:intergenic |
| GTTGGAGGTGTAGGTGGTGG+TGG | 0.435918 | tig0020435:-136273 | Msa1381540:CDS |
| GGTGTGCTGGCCGGTATAAT+CGG | 0.438441 | tig0020435:-133721 | Msa1381540:CDS |
| CAACAAAAGCATTCTTAAAA+GGG | 0.441289 | tig0020435:-134806 | Msa1381540:CDS |
| GCTACTATTGCAGCCTTGGT+TGG | 0.446086 | tig0020435:-133307 | Msa1381540:CDS |
| CTTCACGACGTTGGCGTGAA+GGG | 0.452707 | tig0020435:+136986 | None:intergenic |
| GCTAAATCATAGTCAATGAT+TGG | 0.453065 | tig0020435:+135040 | None:intergenic |
| GTTTGTTTCAGGTATGATCA+TGG | 0.467366 | tig0020435:-135122 | Msa1381540:intron |
| AAATGAAAATTGAGATTGAA+AGG | 0.468829 | tig0020435:+137041 | None:intergenic |
| ATTATTGGCAATGTACAAAC+CGG | 0.472551 | tig0020435:+132833 | None:intergenic |
| TAATTTGGTTTGCAAAATGA+AGG | 0.474766 | tig0020435:+137102 | None:intergenic |
| ACCAAACAGAACACGAGTCT+TGG | 0.476954 | tig0020435:-136867 | Msa1381540:five_prime_UTR |
| CACAGCTCTTTACTTGAGCC+TGG | 0.479609 | tig0020435:-133332 | Msa1381540:intron |
| GGAAGTGTTGGAGGTGTAGG+TGG | 0.480918 | tig0020435:-136279 | Msa1381540:CDS |
| TTTGGAAGTGTTGGAGGTGT+AGG | 0.483068 | tig0020435:-136282 | Msa1381540:CDS |
| TTATGGAAATCAGATGGATC+GGG | 0.484509 | tig0020435:-136600 | Msa1381540:CDS |
| ATTCATTCTAGGAGGCTGCC+AGG | 0.485158 | tig0020435:-134599 | Msa1381540:intron |
| GAGGCAACTGCATTGTTCAC+AGG | 0.489298 | tig0020435:-133820 | Msa1381540:CDS |
| ACCGAGGCCAAGAGCTAAGT+TGG | 0.495274 | tig0020435:-133039 | Msa1381540:three_prime_UTR |
| ATCACGGCCAACTTAGCTCT+TGG | 0.504666 | tig0020435:+133032 | None:intergenic |
| TCTTCACGACGTTGGCGTGA+AGG | 0.504828 | tig0020435:+136985 | None:intergenic |
| CTTATGGAAATCAGATGGAT+CGG | 0.504898 | tig0020435:-136601 | Msa1381540:CDS |
| GGTATAATCGGTGGATTGCT+GGG | 0.505907 | tig0020435:-133709 | Msa1381540:CDS |
| AGTGTTGGAGGTGTAGGTGG+TGG | 0.506773 | tig0020435:-136276 | Msa1381540:CDS |
| ACCAAATGTTGCCATTGAAA+AGG | 0.507227 | tig0020435:-134435 | Msa1381540:CDS |
| ATAGCTTCTACTGGTGATCA+AGG | 0.508677 | tig0020435:-133787 | Msa1381540:CDS |
| CTCATGCTTGGTATCAGCAT+TGG | 0.509084 | tig0020435:-134998 | Msa1381540:CDS |
| GATTTCTTATGGAAATCAGA+TGG | 0.512178 | tig0020435:-136606 | Msa1381540:CDS |
| CAGTTACCCCAACTGCAATT+GGG | 0.512495 | tig0020435:+133848 | None:intergenic |
| ATTGCCGATCATGAATATAT+GGG | 0.513117 | tig0020435:-133154 | Msa1381540:CDS |
| ATGCAGATCCCAATTGCAGT+TGG | 0.515311 | tig0020435:-133856 | Msa1381540:intron |
| GGAGCTGCGTTTGGAAGTGT+TGG | 0.516172 | tig0020435:-136291 | Msa1381540:CDS |
| GCAATCTCATTAGGTGGAGT+TGG | 0.517080 | tig0020435:-133199 | Msa1381540:CDS |
| ACGGGAGGGAGAACATTGTA+TGG | 0.519337 | tig0020435:-132782 | Msa1381540:three_prime_UTR |
| ATGGCAACATTTGGTCCAGT+TGG | 0.520257 | tig0020435:+134443 | None:intergenic |
| TTTGGTTGGCAAATTGTGTT+GGG | 0.522022 | tig0020435:-136333 | Msa1381540:CDS |
| ATTTGGTTGGCAAATTGTGT+TGG | 0.522888 | tig0020435:-136334 | Msa1381540:CDS |
| TTTGTTTCAGGTATGATCAT+GGG | 0.526377 | tig0020435:-135121 | Msa1381540:intron |
| CGGAACGAACCATAAGGAAC+CGG | 0.527270 | tig0020435:+133446 | None:intergenic |
| CAGCAATCCACCGATTATAC+CGG | 0.529187 | tig0020435:+133711 | None:intergenic |
| AATGAAAATTGAGATTGAAA+GGG | 0.530652 | tig0020435:+137042 | None:intergenic |
| GGGTTATCAACACGTGTGGC+CGG | 0.530852 | tig0020435:-136580 | Msa1381540:intron |
| TTTGAGAATATCTGCAAGTA+CGG | 0.532267 | tig0020435:-133130 | Msa1381540:CDS |
| ATATATATCTTCACAATCAC+GGG | 0.532934 | tig0020435:-132800 | Msa1381540:three_prime_UTR |
| TCTTAAAAGGGCTTGAGACA+TGG | 0.533780 | tig0020435:-134794 | Msa1381540:CDS |
| AGGTAGGATGTCTCAGCCTA+AGG | 0.536545 | tig0020435:+135071 | None:intergenic |
| TATATATATCTTCACAATCA+CGG | 0.537445 | tig0020435:-132801 | Msa1381540:three_prime_UTR |
| GATTGAAAGGGAAGAAATGA+TGG | 0.537920 | tig0020435:+137054 | None:intergenic |
| TGTGTGTTTGGTGTGCTGGC+CGG | 0.542939 | tig0020435:-133730 | Msa1381540:CDS |
| TAATAATTTCTTCACGACGT+TGG | 0.544698 | tig0020435:+136977 | None:intergenic |
| AGAAGAGTGATAGCTTCTAC+TGG | 0.546881 | tig0020435:-133796 | Msa1381540:CDS |
| TACGGAATCACTCCATCACT+TGG | 0.549675 | tig0020435:+132965 | None:intergenic |
| GCCAGGAGACAAGAATCAAA+TGG | 0.550110 | tig0020435:-134582 | Msa1381540:intron |
| GGATTGCTGGGACTAGGAGG+CGG | 0.552188 | tig0020435:-133697 | Msa1381540:CDS |
| CACAATATGTTGTCCAACCA+AGG | 0.555321 | tig0020435:+133294 | None:intergenic |
| ATAAGTTTCTGAGTTTCCTA+CGG | 0.556116 | tig0020435:+132947 | None:intergenic |
| GGAGAATGTCATTGCGAAAG+TGG | 0.557248 | tig0020435:+133511 | None:intergenic |
| CTCCTCGTCTATGTCTGTTG+TGG | 0.560055 | tig0020435:-133492 | Msa1381540:CDS |
| TGCAGGAAATGGAATTTGGT+TGG | 0.562713 | tig0020435:-136347 | Msa1381540:intron |
| GCAGATCCCAATTGCAGTTG+GGG | 0.562723 | tig0020435:-133854 | Msa1381540:intron |
| CAAGGGAAAGCATTTACAGT+TGG | 0.564981 | tig0020435:-133769 | Msa1381540:CDS |
| ATTCAACCTATGCTCATGCT+TGG | 0.566741 | tig0020435:-135010 | Msa1381540:CDS |
| GTTTGAAACTTACTTGAGGA+GGG | 0.568900 | tig0020435:+133638 | None:intergenic |
| CAACTGTCTACTACAACCTT+AGG | 0.569715 | tig0020435:-135087 | Msa1381540:CDS |
| ATCGGTGGATTGCTGGGACT+AGG | 0.570311 | tig0020435:-133703 | Msa1381540:CDS |
| AAATCCCATATATTCATGAT+CGG | 0.571395 | tig0020435:+133150 | None:intergenic |
| ACACACAATAGATGACTAGC+TGG | 0.573367 | tig0020435:+133746 | None:intergenic |
| GCTGCGTTTGGAAGTGTTGG+AGG | 0.574281 | tig0020435:-136288 | Msa1381540:CDS |
| GTGAAGAAGAAAATTCGGAC+AGG | 0.578014 | tig0020435:+136888 | None:intergenic |
| ATCAGTGCAATCTCATTAGG+TGG | 0.579952 | tig0020435:-133205 | Msa1381540:CDS |
| AGGCAACTGCATTGTTCACA+GGG | 0.582240 | tig0020435:-133819 | Msa1381540:CDS |
| AGTTTGAAACTTACTTGAGG+AGG | 0.587517 | tig0020435:+133637 | None:intergenic |
| GTCAATGATTGGCATATCCA+AGG | 0.593318 | tig0020435:+135051 | None:intergenic |
| TTACATCCTCGCATAGCATG+AGG | 0.594594 | tig0020435:-132747 | Msa1381540:three_prime_UTR |
| TGTCATTGCGAAAGTGGCTG+TGG | 0.598176 | tig0020435:+133517 | None:intergenic |
| GGTGGATTGCTGGGACTAGG+AGG | 0.603818 | tig0020435:-133700 | Msa1381540:CDS |
| GGATAAGAAATAATCTATCA+CGG | 0.610056 | tig0020435:+133016 | None:intergenic |
| ATGATTGGCATATCCAAGGT+AGG | 0.612586 | tig0020435:+135055 | None:intergenic |
| CTGATACCAAGCATGAGCAT+AGG | 0.621971 | tig0020435:+135004 | None:intergenic |
| TATTCAAAAGCTGCGAACCG+AGG | 0.622984 | tig0020435:-133055 | Msa1381540:three_prime_UTR |
| TAGGCTGAGACATCCTACCT+TGG | 0.634297 | tig0020435:-135068 | Msa1381540:CDS |
| AGGCTGCAATAGTAGCCACC+AGG | 0.634890 | tig0020435:+133314 | None:intergenic |
| AGTTGGGGTAACTGCGTACG+AGG | 0.636664 | tig0020435:-133839 | Msa1381540:CDS |
| TACATCCTCGCATAGCATGA+GGG | 0.639154 | tig0020435:-132746 | Msa1381540:three_prime_UTR |
| AACCTCCCTCATGCTATGCG+AGG | 0.640641 | tig0020435:+132741 | None:intergenic |
| TATATCTTCACAATCACGGG+AGG | 0.644652 | tig0020435:-132797 | Msa1381540:three_prime_UTR |
| CCAATAATAAGACTGAGCAT+AGG | 0.644853 | tig0020435:+136240 | None:intergenic |
| TAGCTTCTACTGGTGATCAA+GGG | 0.646261 | tig0020435:-133786 | Msa1381540:CDS |
| TTGGACAACATATTGTGAGA+AGG | 0.670015 | tig0020435:-133288 | Msa1381540:CDS |
| GATCGGGTTATCAACACGTG+TGG | 0.675635 | tig0020435:-136584 | Msa1381540:CDS |
| ATATCTTCACAATCACGGGA+GGG | 0.676303 | tig0020435:-132796 | Msa1381540:three_prime_UTR |
| GTGCTGGCCGGTATAATCGG+TGG | 0.677338 | tig0020435:-133718 | Msa1381540:CDS |
| ATCCTCGCATAGCATGAGGG+AGG | 0.678812 | tig0020435:-132743 | Msa1381540:three_prime_UTR |
| AAGTGATGGAGTGATTCCGT+AGG | 0.682504 | tig0020435:-132963 | Msa1381540:three_prime_UTR |
| AGCTCTTTACTTGAGCCTGG+TGG | 0.686286 | tig0020435:-133329 | Msa1381540:CDS |
| TGCCATTGAAAAGGAAAACG+AGG | 0.701492 | tig0020435:-134426 | Msa1381540:intron |
| TTCCACAACAGACATAGACG+AGG | 0.749880 | tig0020435:+133490 | None:intergenic |
| GGAACTCTGAATATCACACG+CGG | 0.790116 | tig0020435:-137158 | Msa1381540:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATAATATTTTATTAAAA+TGG | - | tig0020435:134166-134185 | Msa1381540:intron | 0.0% |
| !! | AAAAAAAAAAAATATTAATA+TGG | - | tig0020435:134309-134328 | Msa1381540:intron | 0.0% |
| !! | AAAAAATATTAATATGGTAA+AGG | - | tig0020435:134315-134334 | Msa1381540:intron | 10.0% |
| !! | TTCCATATTTAATAATAATT+TGG | - | tig0020435:135478-135497 | Msa1381540:intron | 10.0% |
| !! | TACCAAATTATTATTAAATA+TGG | + | tig0020435:135483-135502 | None:intergenic | 10.0% |
| !! | AATAAAAGAACACAATAATT+TGG | + | tig0020435:132763-132782 | None:intergenic | 15.0% |
| !! | GTATTAGTAACATTAAAATT+TGG | + | tig0020435:133178-133197 | None:intergenic | 15.0% |
| !! | AAAAGATAAATAGTAGTATT+TGG | - | tig0020435:133358-133377 | Msa1381540:intron | 15.0% |
| !! | AAATAATTATCTGAAAGTAA+CGG | + | tig0020435:133803-133822 | None:intergenic | 15.0% |
| !! | TTTCAAAAGAGATATTATAA+TGG | - | tig0020435:134078-134097 | Msa1381540:intron | 15.0% |
| !! | TTCAAAAGAGATATTATAAT+GGG | - | tig0020435:134079-134098 | Msa1381540:intron | 15.0% |
| !! | AATTGTTTACTAAATGATAA+GGG | + | tig0020435:134116-134135 | None:intergenic | 15.0% |
| !! | TAATTGTTTACTAAATGATA+AGG | + | tig0020435:134117-134136 | None:intergenic | 15.0% |
| !! | AATTGAATTATCTAAGAAAA+TGG | + | tig0020435:134448-134467 | None:intergenic | 15.0% |
| !!! | ATTTTCTTAGATAATTCAAT+TGG | - | tig0020435:134447-134466 | Msa1381540:CDS | 15.0% |
| !!! | AATTTTTTTTACTCTTATGT+AGG | - | tig0020435:135013-135032 | Msa1381540:CDS | 15.0% |
| !! | CTATAATTGAAAATGTATAT+TGG | - | tig0020435:135633-135652 | Msa1381540:intron | 15.0% |
| !! | ATTAATTGAAAGTTATAAAC+TGG | + | tig0020435:135754-135773 | None:intergenic | 15.0% |
| !!! | CTTTTTATAATATTCAGTTT+TGG | - | tig0020435:136448-136467 | Msa1381540:intron | 15.0% |
| !! | TATATAACAAGCTAAATTAT+TGG | + | tig0020435:137032-137051 | None:intergenic | 15.0% |
| !! | AATGAAAATTGAGATTGAAA+GGG | + | tig0020435:132808-132827 | None:intergenic | 20.0% |
| !! | AAATGAAAATTGAGATTGAA+AGG | + | tig0020435:132809-132828 | None:intergenic | 20.0% |
| !!! | TATTTTTCCACAGAAAATAA+AGG | + | tig0020435:132906-132925 | None:intergenic | 20.0% |
| !! | AATTCAAAGAACAAAAAACA+TGG | - | tig0020435:133054-133073 | Msa1381540:three_prime_UTR | 20.0% |
| !! | ATTCAAAGAACAAAAAACAT+GGG | - | tig0020435:133055-133074 | Msa1381540:three_prime_UTR | 20.0% |
| !!! | TTATTTCTTTCTGAATTCTA+TGG | - | tig0020435:133393-133412 | Msa1381540:intron | 20.0% |
| !! | TAATTATTTCAACCACTTAA+CGG | - | tig0020435:133814-133833 | Msa1381540:CDS | 20.0% |
| !! | TTATATCTTATGTCCAAATT+TGG | + | tig0020435:133928-133947 | None:intergenic | 20.0% |
| !! | TAAGAGTAAAAAAAATTCAG+AGG | + | tig0020435:135010-135029 | None:intergenic | 20.0% |
| !! | AAACATTTATTTGTTCACAA+TGG | + | tig0020435:135153-135172 | None:intergenic | 20.0% |
| !!! | TACCTATTTTAATTCATTCT+AGG | - | tig0020435:135237-135256 | Msa1381540:intron | 20.0% |
| !!! | GAGTTTATTCAATTTCTTTT+TGG | - | tig0020435:135354-135373 | Msa1381540:intron | 20.0% |
| !!! | TATTCAATTTCTTTTTGGTT+AGG | - | tig0020435:135359-135378 | Msa1381540:intron | 20.0% |
| !! | AATTGAAAATGTATATTGGA+AGG | - | tig0020435:135637-135656 | Msa1381540:intron | 20.0% |
| !! | GTTACAAGTTACAAAAATAT+CGG | - | tig0020435:135936-135955 | Msa1381540:intron | 20.0% |
| !! | ATGAAAATTTGACAATAATC+CGG | - | tig0020435:136995-137014 | Msa1381540:five_prime_UTR | 20.0% |
| !! | TATATATATCTTCACAATCA+CGG | - | tig0020435:137046-137065 | Msa1381540:five_prime_UTR | 20.0% |
| !!! | TAATTTGGTTTGCAAAATGA+AGG | + | tig0020435:132748-132767 | None:intergenic | 25.0% |
| ! | TGAAAATGAGATCCATATTA+TGG | - | tig0020435:133083-133102 | Msa1381540:intron | 25.0% |
| !! | TATTTTCACAAGCTTTCTTT+CGG | + | tig0020435:133149-133168 | None:intergenic | 25.0% |
| !!! | TTGTTTATTTGTTATGTTGC+AGG | - | tig0020435:133483-133502 | Msa1381540:CDS | 25.0% |
| ! | TGAACCTTGTACAATTAAAT+TGG | - | tig0020435:133731-133750 | Msa1381540:CDS | 25.0% |
| ! | AGAGAATTAAATGCTTATCA+AGG | - | tig0020435:133853-133872 | Msa1381540:CDS | 25.0% |
| ! | CTTGTATGGTCAAAAAATTT+GGG | + | tig0020435:134035-134054 | None:intergenic | 25.0% |
| ! | TCTTGTATGGTCAAAAAATT+TGG | + | tig0020435:134036-134055 | None:intergenic | 25.0% |
| !! | CTAAATATATGACTCTTTTC+CGG | + | tig0020435:134368-134387 | None:intergenic | 25.0% |
| ! | GGAAAAGAGTCATATATTTA+GGG | - | tig0020435:134367-134386 | Msa1381540:intron | 25.0% |
| !!! | CAGGGATAATTTAGTTTTTA+AGG | + | tig0020435:134633-134652 | None:intergenic | 25.0% |
| !! | TTGCTTATTGTTCTTTTCTT+AGG | - | tig0020435:134915-134934 | Msa1381540:intron | 25.0% |
| !!! | TCAACAAAAGCATTCTTAAA+AGG | - | tig0020435:135040-135059 | Msa1381540:CDS | 25.0% |
| !!! | CAACAAAAGCATTCTTAAAA+GGG | - | tig0020435:135041-135060 | Msa1381540:CDS | 25.0% |
| ! | TAAGGAAACCATAATGAAAA+AGG | - | tig0020435:135078-135097 | Msa1381540:CDS | 25.0% |
| !!! | AAATGAGACCTTTTTCATTA+TGG | + | tig0020435:135089-135108 | None:intergenic | 25.0% |
| ! | CTCCTAGAATGAATTAAAAT+AGG | + | tig0020435:135242-135261 | None:intergenic | 25.0% |
| !!! | CTATTTTAATTCATTCTAGG+AGG | - | tig0020435:135240-135259 | Msa1381540:intron | 25.0% |
| !!! | AGGACAACTTTATTTTGTTT+TGG | + | tig0020435:135310-135329 | None:intergenic | 25.0% |
| ! | AAAACAAAATAAAGTTGTCC+TGG | - | tig0020435:135309-135328 | Msa1381540:intron | 25.0% |
| ! | GTACAAGAGACTATTATATT+GGG | - | tig0020435:135443-135462 | Msa1381540:intron | 25.0% |
| ! | TACAAGAGACTATTATATTG+GGG | - | tig0020435:135444-135463 | Msa1381540:intron | 25.0% |
| ! | TCAATAATGTGTCAAATTAG+TGG | + | tig0020435:135586-135605 | None:intergenic | 25.0% |
| ! | ATAATAATTCGTTCAATTGC+AGG | - | tig0020435:135607-135626 | Msa1381540:intron | 25.0% |
| ! | AAATCCCATATATTCATGAT+CGG | + | tig0020435:136700-136719 | None:intergenic | 25.0% |
| ! | GGATAAGAAATAATCTATCA+CGG | + | tig0020435:136834-136853 | None:intergenic | 25.0% |
| !! | TTATTTCTTATCCTGATAGA+AGG | - | tig0020435:136841-136860 | Msa1381540:five_prime_UTR | 25.0% |
| ! | AAAAAATTACACCTTCTATC+AGG | + | tig0020435:136855-136874 | None:intergenic | 25.0% |
| !! | TTTTTATTATTGCCAAGTGA+TGG | - | tig0020435:136870-136889 | Msa1381540:five_prime_UTR | 25.0% |
| ! | ATATATATCTTCACAATCAC+GGG | - | tig0020435:137047-137066 | Msa1381540:five_prime_UTR | 25.0% |
| ! | AAAAAATGTGCATAATGATC+CGG | + | tig0020435:137134-137153 | None:intergenic | 25.0% |
| TAATAATTTCTTCACGACGT+TGG | + | tig0020435:132873-132892 | None:intergenic | 30.0% | |
| ! | GTTTGGTGAAGAAGAAAATT+CGG | + | tig0020435:132967-132986 | None:intergenic | 30.0% |
| TAGCAACATCATCCATAATA+TGG | + | tig0020435:133098-133117 | None:intergenic | 30.0% | |
| !! | CAAAAGCTGTTGATTTCTTA+TGG | - | tig0020435:133230-133249 | Msa1381540:CDS | 30.0% |
| GATTTCTTATGGAAATCAGA+TGG | - | tig0020435:133241-133260 | Msa1381540:CDS | 30.0% | |
| ACAGAAAAGTGAAATCTTAC+CGG | + | tig0020435:133289-133308 | None:intergenic | 30.0% | |
| !! | GTAAGATTTCACTTTTCTGT+TGG | - | tig0020435:133289-133308 | Msa1381540:CDS | 30.0% |
| !! | ATTTGTTATGTTGCAGGAAA+TGG | - | tig0020435:133489-133508 | Msa1381540:CDS | 30.0% |
| !!! | ATTGTGTTGGGTAGTTTTAT+TGG | - | tig0020435:133526-133545 | Msa1381540:CDS | 30.0% |
| !!! | GGTAGTTTTATTGGATTTTG+TGG | - | tig0020435:133535-133554 | Msa1381540:intron | 30.0% |
| GAGACCAATTTAATTGTACA+AGG | + | tig0020435:133738-133757 | None:intergenic | 30.0% | |
| AGTACTCCAAAATACTTGTA+TGG | - | tig0020435:133901-133920 | Msa1381540:intron | 30.0% | |
| ! | TTTGGACCATACAAGTATTT+TGG | + | tig0020435:133910-133929 | None:intergenic | 30.0% |
| ATACTTGTATGGTCCAAATT+TGG | - | tig0020435:133912-133931 | Msa1381540:intron | 30.0% | |
| AGTATAGAGAAACTCTTGTA+TGG | + | tig0020435:134049-134068 | None:intergenic | 30.0% | |
| CTTAGAGTATGTTTCTTACA+AGG | - | tig0020435:134253-134272 | Msa1381540:intron | 30.0% | |
| TGTTCATAGTAGATACATTC+CGG | - | tig0020435:134346-134365 | Msa1381540:intron | 30.0% | |
| CGGAAAAGAGTCATATATTT+AGG | - | tig0020435:134366-134385 | Msa1381540:intron | 30.0% | |
| AAGCTAATGATTGAAGAAGT+TGG | - | tig0020435:134473-134492 | Msa1381540:intron | 30.0% | |
| ATTGAAGAAGTTGGAAAATC+CGG | - | tig0020435:134482-134501 | Msa1381540:intron | 30.0% | |
| TTTAGTATTGTTCCTGAATC+CGG | + | tig0020435:134504-134523 | None:intergenic | 30.0% | |
| AGCTTATTTATGCTTGTTTG+TGG | + | tig0020435:134601-134620 | None:intergenic | 30.0% | |
| CTCTCTTTGATTAATGTTCA+GGG | + | tig0020435:134651-134670 | None:intergenic | 30.0% | |
| TCTCTCTTTGATTAATGTTC+AGG | + | tig0020435:134652-134671 | None:intergenic | 30.0% | |
| ! | TTTGTTTCAGGTATGATCAT+GGG | - | tig0020435:134726-134745 | Msa1381540:intron | 30.0% |
| GCTAAATCATAGTCAATGAT+TGG | + | tig0020435:134810-134829 | None:intergenic | 30.0% | |
| GAAGAAGACAGTTGAATTAA+TGG | + | tig0020435:134944-134963 | None:intergenic | 30.0% | |
| TCTGACATCAGGAAAAATAA+TGG | + | tig0020435:135336-135355 | None:intergenic | 30.0% | |
| ATTGAATAAACTCTGACATC+AGG | + | tig0020435:135347-135366 | None:intergenic | 30.0% | |
| !!! | ATTTCTTTTTGGTTAGGTTC+AGG | - | tig0020435:135365-135384 | Msa1381540:intron | 30.0% |
| GGTACAAGAGACTATTATAT+TGG | - | tig0020435:135442-135461 | Msa1381540:intron | 30.0% | |
| ACAAGAGACTATTATATTGG+GGG | - | tig0020435:135445-135464 | Msa1381540:intron | 30.0% | |
| !! | TTAGTGTCACTTTGATCAAA+TGG | + | tig0020435:135510-135529 | None:intergenic | 30.0% |
| TTTGATCAAAGTGACACTAA+TGG | - | tig0020435:135510-135529 | Msa1381540:intron | 30.0% | |
| AATGTATATTGGAAGGAGTT+TGG | - | tig0020435:135644-135663 | Msa1381540:intron | 30.0% | |
| ATGTATATTGGAAGGAGTTT+GGG | - | tig0020435:135645-135664 | Msa1381540:intron | 30.0% | |
| AGCATGATTCCTAATTGAAT+CGG | - | tig0020435:136282-136301 | Msa1381540:CDS | 30.0% | |
| ! | TCACATTTCAAAAAGTGCAT+TGG | + | tig0020435:136493-136512 | None:intergenic | 30.0% |
| TTTATCAGTGCAATCTCATT+AGG | - | tig0020435:136639-136658 | Msa1381540:CDS | 30.0% | |
| ATTGCCGATCATGAATATAT+GGG | - | tig0020435:136693-136712 | Msa1381540:CDS | 30.0% | |
| TTTGAGAATATCTGCAAGTA+CGG | - | tig0020435:136717-136736 | Msa1381540:CDS | 30.0% | |
| ATAAGTTTCTGAGTTTCCTA+CGG | + | tig0020435:136903-136922 | None:intergenic | 30.0% | |
| CACATGCATCTTAATCTAAA+TGG | + | tig0020435:136949-136968 | None:intergenic | 30.0% | |
| ATTATTGGCAATGTACAAAC+CGG | + | tig0020435:137017-137036 | None:intergenic | 30.0% | |
| GATTGAAAGGGAAGAAATGA+TGG | + | tig0020435:132796-132815 | None:intergenic | 35.0% | |
| ! | ACAGGTAGAACTGAATTTTC+GGG | + | tig0020435:132944-132963 | None:intergenic | 35.0% |
| ! | GACAGGTAGAACTGAATTTT+CGG | + | tig0020435:132945-132964 | None:intergenic | 35.0% |
| ! | TGGATGATGTTGCTATTGTT+TGG | - | tig0020435:133103-133122 | Msa1381540:intron | 35.0% |
| CTTATGGAAATCAGATGGAT+CGG | - | tig0020435:133246-133265 | Msa1381540:CDS | 35.0% | |
| TTATGGAAATCAGATGGATC+GGG | - | tig0020435:133247-133266 | Msa1381540:CDS | 35.0% | |
| TTCGTCAGTTATTGTAGCTT+TGG | - | tig0020435:133449-133468 | Msa1381540:intron | 35.0% | |
| TCGTCAGTTATTGTAGCTTT+GGG | - | tig0020435:133450-133469 | Msa1381540:intron | 35.0% | |
| ATGTTGCAGGAAATGGAATT+TGG | - | tig0020435:133496-133515 | Msa1381540:CDS | 35.0% | |
| ATTTGGTTGGCAAATTGTGT+TGG | - | tig0020435:133513-133532 | Msa1381540:CDS | 35.0% | |
| TTTGGTTGGCAAATTGTGTT+GGG | - | tig0020435:133514-133533 | Msa1381540:CDS | 35.0% | |
| CCAATAATAAGACTGAGCAT+AGG | + | tig0020435:133610-133629 | None:intergenic | 35.0% | |
| !! | CCTATGCTCAGTCTTATTAT+TGG | - | tig0020435:133607-133626 | Msa1381540:intron | 35.0% |
| AGAATCACGTGTCTTACATT+TGG | + | tig0020435:133662-133681 | None:intergenic | 35.0% | |
| ATTCTCTACGTGTTCTCTTT+CGG | + | tig0020435:133840-133859 | None:intergenic | 35.0% | |
| TACAAGGTCTCAAATTCGAT+AGG | - | tig0020435:134269-134288 | Msa1381540:intron | 35.0% | |
| !! | TGTATCTCAAACTCTGGTTT+TGG | + | tig0020435:134550-134569 | None:intergenic | 35.0% |
| !! | GTTTGAGATACACTGGATTT+TGG | - | tig0020435:134558-134577 | Msa1381540:intron | 35.0% |
| TAGCGTGTTATGTTTGTTTC+AGG | - | tig0020435:134714-134733 | Msa1381540:intron | 35.0% | |
| ! | GTTTGTTTCAGGTATGATCA+TGG | - | tig0020435:134725-134744 | Msa1381540:intron | 35.0% |
| TCAACGTTGTATTTCCTGAT+TGG | - | tig0020435:134880-134899 | Msa1381540:intron | 35.0% | |
| AATATAGTGACAAGCCAATC+AGG | + | tig0020435:134897-134916 | None:intergenic | 35.0% | |
| ATCAGGAAAAATAATGGTCC+AGG | + | tig0020435:135330-135349 | None:intergenic | 35.0% | |
| GAATATAAAGCTCTTCCAAC+TGG | - | tig0020435:135389-135408 | Msa1381540:intron | 35.0% | |
| ACCAAATGTTGCCATTGAAA+AGG | - | tig0020435:135412-135431 | Msa1381540:intron | 35.0% | |
| ! | TCCTTTTCAATGGCAACATT+TGG | + | tig0020435:135416-135435 | None:intergenic | 35.0% |
| ! | TACCTCGTTTTCCTTTTCAA+TGG | + | tig0020435:135426-135445 | None:intergenic | 35.0% |
| TTGTCCTTCTAATCCAATGA+CGG | + | tig0020435:135556-135575 | None:intergenic | 35.0% | |
| TACATGTTCTGCAGCATATT+GGG | - | tig0020435:135807-135826 | Msa1381540:intron | 35.0% | |
| ACAGGTAAATTTACCTCTAG+TGG | - | tig0020435:135843-135862 | Msa1381540:intron | 35.0% | |
| AAGAAAAGCAAATCCACTAG+AGG | + | tig0020435:135859-135878 | None:intergenic | 35.0% | |
| CTAGTCATCTATTGTGTGTT+TGG | - | tig0020435:136105-136124 | Msa1381540:intron | 35.0% | |
| ! | GTTTGAAACTTACTTGAGGA+GGG | + | tig0020435:136212-136231 | None:intergenic | 35.0% |
| ! | AGTTTGAAACTTACTTGAGG+AGG | + | tig0020435:136213-136232 | None:intergenic | 35.0% |
| ! | TGCAGTTTGAAACTTACTTG+AGG | + | tig0020435:136216-136235 | None:intergenic | 35.0% |
| TAAACAACTGTTTGATGAGC+AGG | + | tig0020435:136263-136282 | None:intergenic | 35.0% | |
| AGAAGACATCCGATTCAATT+AGG | + | tig0020435:136294-136313 | None:intergenic | 35.0% | |
| AAGTAAGTTAGAAGCTATCG+CGG | + | tig0020435:136424-136443 | None:intergenic | 35.0% | |
| TTGGACAACATATTGTGAGA+AGG | - | tig0020435:136559-136578 | Msa1381540:intron | 35.0% | |
| CTCATCATCTTTATTCTAGC+TGG | - | tig0020435:136609-136628 | Msa1381540:CDS | 35.0% | |
| TGGAGTTGGCATTTCAAATA+TGG | - | tig0020435:136662-136681 | Msa1381540:CDS | 35.0% | |
| GATTGCCGATCATGAATATA+TGG | - | tig0020435:136692-136711 | Msa1381540:CDS | 35.0% | |
| TCCACAGAAAATAAAGGAGC+AGG | + | tig0020435:132900-132919 | None:intergenic | 40.0% | |
| GTGAAGAAGAAAATTCGGAC+AGG | + | tig0020435:132962-132981 | None:intergenic | 40.0% | |
| !! | TATTGTAGCTTTGGGTGATG+TGG | - | tig0020435:133458-133477 | Msa1381540:CDS | 40.0% |
| TGCAGGAAATGGAATTTGGT+TGG | - | tig0020435:133500-133519 | Msa1381540:CDS | 40.0% | |
| GAGATAGCAGTCGATGATTT+AGG | + | tig0020435:133640-133659 | None:intergenic | 40.0% | |
| AAGTTGGAAAATCCGGATTC+AGG | - | tig0020435:134489-134508 | Msa1381540:intron | 40.0% | |
| !!! | CTCAAACTCTGGTTTTGGAT+AGG | + | tig0020435:134545-134564 | None:intergenic | 40.0% |
| ! | AACCAGAGTTTGAGATACAC+TGG | - | tig0020435:134551-134570 | Msa1381540:intron | 40.0% |
| ATCCAGTGTATCTCAAACTC+TGG | + | tig0020435:134556-134575 | None:intergenic | 40.0% | |
| AGAGAACATTTGCAGCTTCT+TGG | - | tig0020435:134667-134686 | Msa1381540:intron | 40.0% | |
| CAACTGTCTACTACAACCTT+AGG | - | tig0020435:134760-134779 | Msa1381540:intron | 40.0% | |
| ATGATTGGCATATCCAAGGT+AGG | + | tig0020435:134795-134814 | None:intergenic | 40.0% | |
| GTCAATGATTGGCATATCCA+AGG | + | tig0020435:134799-134818 | None:intergenic | 40.0% | |
| ATTCAACCTATGCTCATGCT+TGG | - | tig0020435:134837-134856 | Msa1381540:intron | 40.0% | |
| TCTTAAAAGGGCTTGAGACA+TGG | - | tig0020435:135053-135072 | Msa1381540:CDS | 40.0% | |
| ACCATTTGATTCTTGTCTCC+TGG | + | tig0020435:135269-135288 | None:intergenic | 40.0% | |
| TGCCATTGAAAAGGAAAACG+AGG | - | tig0020435:135421-135440 | Msa1381540:intron | 40.0% | |
| AGAGACTATTATATTGGGGG+AGG | - | tig0020435:135448-135467 | Msa1381540:intron | 40.0% | |
| GAGACTATTATATTGGGGGA+GGG | - | tig0020435:135449-135468 | Msa1381540:intron | 40.0% | |
| AAAGTGACACTAATGGTCTC+TGG | - | tig0020435:135517-135536 | Msa1381540:intron | 40.0% | |
| AGGAATTTGAACTCCGTCAT+TGG | - | tig0020435:135540-135559 | Msa1381540:intron | 40.0% | |
| ! | AACTCCGTCATTGGATTAGA+AGG | - | tig0020435:135549-135568 | Msa1381540:intron | 40.0% |
| TGTGATGACAGAACAAACCT+TGG | + | tig0020435:135714-135733 | None:intergenic | 40.0% | |
| CTACATGTTCTGCAGCATAT+TGG | - | tig0020435:135806-135825 | Msa1381540:intron | 40.0% | |
| !! | TTGGGTACTGAACTTGTTAC+AGG | - | tig0020435:135825-135844 | Msa1381540:intron | 40.0% |
| AGAAGAGTGATAGCTTCTAC+TGG | - | tig0020435:136051-136070 | Msa1381540:intron | 40.0% | |
| ATAGCTTCTACTGGTGATCA+AGG | - | tig0020435:136060-136079 | Msa1381540:intron | 40.0% | |
| TAGCTTCTACTGGTGATCAA+GGG | - | tig0020435:136061-136080 | Msa1381540:intron | 40.0% | |
| !! | CAAGGGAAAGCATTTACAGT+TGG | - | tig0020435:136078-136097 | Msa1381540:intron | 40.0% |
| ACACACAATAGATGACTAGC+TGG | + | tig0020435:136104-136123 | None:intergenic | 40.0% | |
| !! | ACTCCTAGCTCTAGAAAAAG+TGG | + | tig0020435:136189-136208 | None:intergenic | 40.0% |
| TTTGATGAGCAGGATAAGAG+AGG | + | tig0020435:136253-136272 | None:intergenic | 40.0% | |
| ! | CTACTTGCTGAAACGATTTC+CGG | - | tig0020435:136382-136401 | Msa1381540:intron | 40.0% |
| AAACGATTTCCGGTTCCTTA+TGG | - | tig0020435:136392-136411 | Msa1381540:intron | 40.0% | |
| CACAATATGTTGTCCAACCA+AGG | + | tig0020435:136556-136575 | None:intergenic | 40.0% | |
| AGAAGGCTGATCATCCTATT+TGG | - | tig0020435:136576-136595 | Msa1381540:intron | 40.0% | |
| TGAGAGATGCTCTTCCAAAT+AGG | + | tig0020435:136593-136612 | None:intergenic | 40.0% | |
| ATCAGTGCAATCTCATTAGG+TGG | - | tig0020435:136642-136661 | Msa1381540:CDS | 40.0% | |
| TATATCTTCACAATCACGGG+AGG | - | tig0020435:137050-137069 | Msa1381540:five_prime_UTR | 40.0% | |
| ATATCTTCACAATCACGGGA+GGG | - | tig0020435:137051-137070 | Msa1381540:five_prime_UTR | 40.0% | |
| GGAACTCTGAATATCACACG+CGG | - | tig0020435:132689-132708 | Msa1381540:three_prime_UTR | 45.0% | |
| !!! | GCCTGCTCCTTTATTTTCTG+TGG | - | tig0020435:132896-132915 | Msa1381540:three_prime_UTR | 45.0% |
| ACCAAACAGAACACGAGTCT+TGG | - | tig0020435:132980-132999 | Msa1381540:three_prime_UTR | 45.0% | |
| ACCAAGACTCGTGTTCTGTT+TGG | + | tig0020435:132984-133003 | None:intergenic | 45.0% | |
| !! | TTTGGAAGTGTTGGAGGTGT+AGG | - | tig0020435:133565-133584 | Msa1381540:intron | 45.0% |
| CTGATACCAAGCATGAGCAT+AGG | + | tig0020435:134846-134865 | None:intergenic | 45.0% | |
| CTCATGCTTGGTATCAGCAT+TGG | - | tig0020435:134849-134868 | Msa1381540:intron | 45.0% | |
| AGGGCTTGAGACATGGAATA+AGG | - | tig0020435:135060-135079 | Msa1381540:CDS | 45.0% | |
| GCCAGGAGACAAGAATCAAA+TGG | - | tig0020435:135265-135284 | Msa1381540:intron | 45.0% | |
| ATGGCAACATTTGGTCCAGT+TGG | + | tig0020435:135407-135426 | None:intergenic | 45.0% | |
| TTGGGCTACTAGCATTTGTG+TGG | - | tig0020435:135663-135682 | Msa1381540:intron | 45.0% | |
| ATGCAGATCCCAATTGCAGT+TGG | - | tig0020435:135991-136010 | Msa1381540:intron | 45.0% | |
| TGCAGATCCCAATTGCAGTT+GGG | - | tig0020435:135992-136011 | Msa1381540:intron | 45.0% | |
| CAGTTACCCCAACTGCAATT+GGG | + | tig0020435:136002-136021 | None:intergenic | 45.0% | |
| AGGCAACTGCATTGTTCACA+GGG | - | tig0020435:136028-136047 | Msa1381540:intron | 45.0% | |
| !! | CTATTGTGTGTTTGGTGTGC+TGG | - | tig0020435:136113-136132 | Msa1381540:intron | 45.0% |
| ! | CAGCAATCCACCGATTATAC+CGG | + | tig0020435:136139-136158 | None:intergenic | 45.0% |
| !! | GGTATAATCGGTGGATTGCT+GGG | - | tig0020435:136138-136157 | Msa1381540:intron | 45.0% |
| !! | ACTAGGAGGCGGATTTGTTA+TGG | - | tig0020435:136161-136180 | Msa1381540:intron | 45.0% |
| !! | CTAGGAGGCGGATTTGTTAT+GGG | - | tig0020435:136162-136181 | Msa1381540:intron | 45.0% |
| !!! | GGTCCACTTTTTCTAGAGCT+AGG | - | tig0020435:136183-136202 | Msa1381540:intron | 45.0% |
| GAATCGGATGTCTTCTGTGT+AGG | - | tig0020435:136298-136317 | Msa1381540:CDS | 45.0% | |
| GGAGAATGTCATTGCGAAAG+TGG | + | tig0020435:136339-136358 | None:intergenic | 45.0% | |
| TTCCACAACAGACATAGACG+AGG | + | tig0020435:136360-136379 | None:intergenic | 45.0% | |
| GCAATCTCATTAGGTGGAGT+TGG | - | tig0020435:136648-136667 | Msa1381540:CDS | 45.0% | |
| TATTCAAAAGCTGCGAACCG+AGG | - | tig0020435:136792-136811 | Msa1381540:exon | 45.0% | |
| TACGGAATCACTCCATCACT+TGG | + | tig0020435:136885-136904 | None:intergenic | 45.0% | |
| ! | AAGTGATGGAGTGATTCCGT+AGG | - | tig0020435:136884-136903 | Msa1381540:five_prime_UTR | 45.0% |
| TTACATCCTCGCATAGCATG+AGG | - | tig0020435:137100-137119 | Msa1381540:five_prime_UTR | 45.0% | |
| TACATCCTCGCATAGCATGA+GGG | - | tig0020435:137101-137120 | Msa1381540:five_prime_UTR | 45.0% | |
| ATAGCATGAGGGAGGTTTAC+CGG | - | tig0020435:137112-137131 | Msa1381540:five_prime_UTR | 45.0% | |
| !! | CTTTATAATAATTTAAAAAA+AGG | - | tig0020435:134139-134158 | Msa1381540:intron | 5.0% |
| GATCGGGTTATCAACACGTG+TGG | - | tig0020435:133263-133282 | Msa1381540:CDS | 50.0% | |
| ! | GGATTTTGTGGAGCTGCGTT+TGG | - | tig0020435:133547-133566 | Msa1381540:intron | 50.0% |
| GTTCTCTTTCGGCCGTTAAG+TGG | + | tig0020435:133829-133848 | None:intergenic | 50.0% | |
| AGGTAGGATGTCTCAGCCTA+AGG | + | tig0020435:134779-134798 | None:intergenic | 50.0% | |
| TAGGCTGAGACATCCTACCT+TGG | - | tig0020435:134779-134798 | Msa1381540:CDS | 50.0% | |
| ! | ATTCATTCTAGGAGGCTGCC+AGG | - | tig0020435:135248-135267 | Msa1381540:intron | 50.0% |
| GTGACACTAATGGTCTCTGG+AGG | - | tig0020435:135520-135539 | Msa1381540:intron | 50.0% | |
| CCTTGGCAATCTGTAGTGCA+AGG | + | tig0020435:135697-135716 | None:intergenic | 50.0% | |
| CCTTGCACTACAGATTGCCA+AGG | - | tig0020435:135694-135713 | Msa1381540:intron | 50.0% | |
| GCAGATCCCAATTGCAGTTG+GGG | - | tig0020435:135993-136012 | Msa1381540:intron | 50.0% | |
| GCAGTTACCCCAACTGCAAT+TGG | + | tig0020435:136003-136022 | None:intergenic | 50.0% | |
| GAGGCAACTGCATTGTTCAC+AGG | - | tig0020435:136027-136046 | Msa1381540:intron | 50.0% | |
| !! | CGGTATAATCGGTGGATTGC+TGG | - | tig0020435:136137-136156 | Msa1381540:intron | 50.0% |
| TGTCATTGCGAAAGTGGCTG+TGG | + | tig0020435:136333-136352 | None:intergenic | 50.0% | |
| CTCCTCGTCTATGTCTGTTG+TGG | - | tig0020435:136355-136374 | Msa1381540:intron | 50.0% | |
| CGGAACGAACCATAAGGAAC+CGG | + | tig0020435:136404-136423 | None:intergenic | 50.0% | |
| CTATCGCGGAACGAACCATA+AGG | + | tig0020435:136410-136429 | None:intergenic | 50.0% | |
| CACAGCTCTTTACTTGAGCC+TGG | - | tig0020435:136515-136534 | Msa1381540:intron | 50.0% | |
| AGCTCTTTACTTGAGCCTGG+TGG | - | tig0020435:136518-136537 | Msa1381540:intron | 50.0% | |
| GCTACTATTGCAGCCTTGGT+TGG | - | tig0020435:136540-136559 | Msa1381540:intron | 50.0% | |
| ! | ATCACGGCCAACTTAGCTCT+TGG | + | tig0020435:136818-136837 | None:intergenic | 50.0% |
| ACGGGAGGGAGAACATTGTA+TGG | - | tig0020435:137065-137084 | Msa1381540:five_prime_UTR | 50.0% | |
| CTTCACGACGTTGGCGTGAA+GGG | + | tig0020435:132864-132883 | None:intergenic | 55.0% | |
| TCTTCACGACGTTGGCGTGA+AGG | + | tig0020435:132865-132884 | None:intergenic | 55.0% | |
| GGGTTATCAACACGTGTGGC+CGG | - | tig0020435:133267-133286 | Msa1381540:CDS | 55.0% | |
| ! | GGAGCTGCGTTTGGAAGTGT+TGG | - | tig0020435:133556-133575 | Msa1381540:intron | 55.0% |
| !! | GCTGCGTTTGGAAGTGTTGG+AGG | - | tig0020435:133559-133578 | Msa1381540:intron | 55.0% |
| !! | GGAAGTGTTGGAGGTGTAGG+TGG | - | tig0020435:133568-133587 | Msa1381540:intron | 55.0% |
| ! | AGTGTTGGAGGTGTAGGTGG+TGG | - | tig0020435:133571-133590 | Msa1381540:intron | 55.0% |
| AGTTGGGGTAACTGCGTACG+AGG | - | tig0020435:136008-136027 | Msa1381540:intron | 55.0% | |
| !! | TGTGTGTTTGGTGTGCTGGC+CGG | - | tig0020435:136117-136136 | Msa1381540:intron | 55.0% |
| ! | GGTGTGCTGGCCGGTATAAT+CGG | - | tig0020435:136126-136145 | Msa1381540:intron | 55.0% |
| !! | ATCGGTGGATTGCTGGGACT+AGG | - | tig0020435:136144-136163 | Msa1381540:intron | 55.0% |
| AGGCTGCAATAGTAGCCACC+AGG | + | tig0020435:136536-136555 | None:intergenic | 55.0% | |
| GGTGGCTACTATTGCAGCCT+TGG | - | tig0020435:136536-136555 | Msa1381540:intron | 55.0% | |
| ACCGAGGCCAAGAGCTAAGT+TGG | - | tig0020435:136808-136827 | Msa1381540:five_prime_UTR | 55.0% | |
| ! | GCCAACTTAGCTCTTGGCCT+CGG | + | tig0020435:136812-136831 | None:intergenic | 55.0% |
| ATCCTCGCATAGCATGAGGG+AGG | - | tig0020435:137104-137123 | Msa1381540:five_prime_UTR | 55.0% | |
| AACCTCCCTCATGCTATGCG+AGG | + | tig0020435:137109-137128 | None:intergenic | 55.0% | |
| ! | GTTGGAGGTGTAGGTGGTGG+TGG | - | tig0020435:133574-133593 | Msa1381540:intron | 60.0% |
| ! | GTGCTGGCCGGTATAATCGG+TGG | - | tig0020435:136129-136148 | Msa1381540:intron | 60.0% |
| !! | GGTGGATTGCTGGGACTAGG+AGG | - | tig0020435:136147-136166 | Msa1381540:intron | 60.0% |
| GGATTGCTGGGACTAGGAGG+CGG | - | tig0020435:136150-136169 | Msa1381540:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0020435 | gene | 132688 | 137181 | 132688 | ID=Msa1381540;Name=Msa1381540 |
| tig0020435 | mRNA | 132688 | 137181 | 132688 | ID=Msa1381540-mRNA-1;Parent=Msa1381540;Name=Msa1381540-mRNA-1;_AED=0.29;_eAED=0.29;_QI=385|0.9|1|1|0.9|0.81|11|413|442 |
| tig0020435 | exon | 132688 | 133095 | 132688 | ID=Msa1381540-mRNA-1:exon:7644;Parent=Msa1381540-mRNA-1 |
| tig0020435 | exon | 133118 | 133349 | 133118 | ID=Msa1381540-mRNA-1:exon:7643;Parent=Msa1381540-mRNA-1 |
| tig0020435 | exon | 133456 | 133549 | 133456 | ID=Msa1381540-mRNA-1:exon:7642;Parent=Msa1381540-mRNA-1 |
| tig0020435 | exon | 133651 | 133872 | 133651 | ID=Msa1381540-mRNA-1:exon:7641;Parent=Msa1381540-mRNA-1 |
| tig0020435 | exon | 134023 | 134076 | 134023 | ID=Msa1381540-mRNA-1:exon:7640;Parent=Msa1381540-mRNA-1 |
| tig0020435 | exon | 134427 | 134488 | 134427 | ID=Msa1381540-mRNA-1:exon:7639;Parent=Msa1381540-mRNA-1 |
| tig0020435 | exon | 134583 | 134610 | 134583 | ID=Msa1381540-mRNA-1:exon:7638;Parent=Msa1381540-mRNA-1 |
| tig0020435 | exon | 134770 | 134834 | 134770 | ID=Msa1381540-mRNA-1:exon:7637;Parent=Msa1381540-mRNA-1 |
| tig0020435 | exon | 134933 | 135133 | 134933 | ID=Msa1381540-mRNA-1:exon:7636;Parent=Msa1381540-mRNA-1 |
| tig0020435 | exon | 136205 | 136364 | 136205 | ID=Msa1381540-mRNA-1:exon:7635;Parent=Msa1381540-mRNA-1 |
| tig0020435 | exon | 136581 | 137181 | 136581 | ID=Msa1381540-mRNA-1:exon:7634;Parent=Msa1381540-mRNA-1 |
| tig0020435 | five_prime_UTR | 136797 | 137181 | 136797 | ID=Msa1381540-mRNA-1:five_prime_utr;Parent=Msa1381540-mRNA-1 |
| tig0020435 | CDS | 136581 | 136796 | 136581 | ID=Msa1381540-mRNA-1:cds;Parent=Msa1381540-mRNA-1 |
| tig0020435 | CDS | 136205 | 136364 | 136205 | ID=Msa1381540-mRNA-1:cds;Parent=Msa1381540-mRNA-1 |
| tig0020435 | CDS | 134933 | 135133 | 134933 | ID=Msa1381540-mRNA-1:cds;Parent=Msa1381540-mRNA-1 |
| tig0020435 | CDS | 134770 | 134834 | 134770 | ID=Msa1381540-mRNA-1:cds;Parent=Msa1381540-mRNA-1 |
| tig0020435 | CDS | 134583 | 134610 | 134583 | ID=Msa1381540-mRNA-1:cds;Parent=Msa1381540-mRNA-1 |
| tig0020435 | CDS | 134427 | 134488 | 134427 | ID=Msa1381540-mRNA-1:cds;Parent=Msa1381540-mRNA-1 |
| tig0020435 | CDS | 134023 | 134076 | 134023 | ID=Msa1381540-mRNA-1:cds;Parent=Msa1381540-mRNA-1 |
| tig0020435 | CDS | 133651 | 133872 | 133651 | ID=Msa1381540-mRNA-1:cds;Parent=Msa1381540-mRNA-1 |
| tig0020435 | CDS | 133456 | 133549 | 133456 | ID=Msa1381540-mRNA-1:cds;Parent=Msa1381540-mRNA-1 |
| tig0020435 | CDS | 133123 | 133349 | 133123 | ID=Msa1381540-mRNA-1:cds;Parent=Msa1381540-mRNA-1 |
| tig0020435 | three_prime_UTR | 133118 | 133122 | 133118 | ID=Msa1381540-mRNA-1:three_prime_utr;Parent=Msa1381540-mRNA-1 |
| tig0020435 | three_prime_UTR | 132688 | 133095 | 132688 | ID=Msa1381540-mRNA-1:three_prime_utr;Parent=Msa1381540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
