AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1224580


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1224580 MtrunA17_Chr4g0075571 88.936 235 6 1 1 235 1 215 3.31e-150 416
Msa1224580 MtrunA17_Chr2g0332581 25.926 243 133 7 7 231 37 250 5.54e-16 74.7
Msa1224580 MtrunA17_Chr4g0003791 28.395 243 127 9 7 231 38 251 2.54e-15 73.6
Msa1224580 MtrunA17_Chr3g0138041 27.347 245 127 7 7 231 37 250 5.43e-15 72.0
Msa1224580 MtrunA17_Chr2g0306861 25.806 248 133 7 4 231 32 248 8.20e-15 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1224580 AT4G22300.1 70.435 230 48 1 3 232 47 256 1.76e-120 343
Msa1224580 AT4G22305.1 63.948 233 64 1 3 235 2 214 5.98e-106 305
Msa1224580 AT4G22305.2 60.465 172 48 1 3 174 2 153 4.33e-68 209
Msa1224580 AT5G20060.1 26.939 245 133 6 4 231 33 248 3.44e-14 70.1
Msa1224580 AT5G20060.4 26.939 245 133 6 4 231 33 248 3.44e-14 70.1
Msa1224580 AT5G20060.3 26.939 245 133 6 4 231 33 248 3.44e-14 70.1
Msa1224580 AT5G20060.2 26.939 245 133 6 4 231 33 248 3.44e-14 70.1
Msa1224580 AT1G18773.2 55.769 52 21 1 155 206 11 60 1.84e-12 60.8
Msa1224580 AT1G18773.1 55.769 52 21 1 155 206 11 60 2.18e-12 60.8
Msa1224580 AT1G18773.3 55.769 52 21 1 155 206 11 60 2.76e-12 60.5
Msa1224580 AT1G18773.4 55.769 52 21 1 155 206 11 60 5.53e-12 60.1

Find 72 sgRNAs with CRISPR-Local

Find 356 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCAAAACTTTGGTGCTTAT+TGG 0.162206 8_1:-89628931 Msa1224580:intron
TGGTGTTAGTTGCGAGTTTA+AGG 0.172548 8_1:-89627663 Msa1224580:intron
TGTTGTTCACAATATTTAAT+AGG 0.260593 8_1:-89627362 Msa1224580:three_prime_UTR
AGAGATACAGATTGAAAATT+AGG 0.267362 8_1:+89627467 None:intergenic
CTGTTGTACCCTAAAACTTT+AGG 0.267673 8_1:-89628447 Msa1224580:CDS
ACCAATAAGCACCAAAGTTT+TGG 0.273846 8_1:+89628930 None:intergenic
CCACAGATAAATATATTGTT+AGG 0.286098 8_1:+89628589 None:intergenic
CAGCCCATGGGACCATAGTA+TGG 0.302977 8_1:+89627745 None:intergenic
ATGGTTCTGTAATGCCTTCA+TGG 0.330844 8_1:-89631252 Msa1224580:CDS
AATAATATGCATACAGTTGC+AGG 0.332819 8_1:+89632184 None:intergenic
GTGATTGTTAACAGTAGAAT+TGG 0.335173 8_1:+89632440 None:intergenic
TTGCACCGTTCTCTTATAGA+TGG 0.337081 8_1:-89628966 Msa1224580:CDS
AGCAAACTATTCTCGTCGTT+TGG 0.346185 8_1:+89628670 None:intergenic
TCCTTCTGCTCCTCACGCTC+CGG 0.418740 8_1:-89632210 Msa1224580:CDS
GTTCTGTGGTTACACGGTCT+TGG 0.419005 8_1:-89632308 Msa1224580:CDS
TATTGTTTCAGTGACGTGTT+TGG 0.420938 8_1:-89632502 Msa1224580:intron
ATAAGTACCCGCTTAGCTTC+AGG 0.433033 8_1:+89628363 None:intergenic
TCTGTAACAGATGAATTAAA+CGG 0.437889 8_1:+89628396 None:intergenic
TGGTATTATTAGGCTTATCC+TGG 0.441301 8_1:-89627564 Msa1224580:intron
GTCTTGATGGGTTCATTGGC+AGG 0.441657 8_1:+89632275 None:intergenic
TAATGTCTTGATGGGTTCAT+TGG 0.446375 8_1:+89632271 None:intergenic
CTCCTCGTTGTTTATTGAGT+GGG 0.455255 8_1:+89627536 None:intergenic
AGAAGTGAATAATGTCTTGA+TGG 0.461638 8_1:+89632262 None:intergenic
TTTGGAATTCCGCCACGGCT+TGG 0.463686 8_1:-89632484 Msa1224580:five_prime_UTR
CACAGATAAATATATTGTTA+GGG 0.468738 8_1:+89628590 None:intergenic
AGCAGAAGGAAAAGACCATT+TGG 0.468754 8_1:+89632223 None:intergenic
TCTTGATCTCATGTCATTGT+GGG 0.469043 8_1:-89627331 Msa1224580:three_prime_UTR
AGCTAAAGCATCTTGAGTCT+TGG 0.470537 8_1:-89627515 Msa1224580:CDS
CATACTATGGTCCCATGGGC+TGG 0.472438 8_1:-89627744 Msa1224580:CDS
TTATACAGACACCCATACTA+TGG 0.480186 8_1:-89627757 Msa1224580:intron
CATTTGGTACTTCTGAATTG+AGG 0.492380 8_1:+89632239 None:intergenic
TGCATACAGTTGCAGGTGAC+CGG 0.492555 8_1:+89632191 None:intergenic
CTCAATTCAGAAGTACCAAA+TGG 0.494388 8_1:-89632238 Msa1224580:CDS
CACCTCCTAAACCAAAACTT+TGG 0.520302 8_1:-89628941 Msa1224580:CDS
GATTCGTTATACGCTCCGTC+AGG 0.520956 8_1:-89632634 Msa1224580:five_prime_UTR
ACAAAACTTCGAGCCGCCAT+TGG 0.521401 8_1:+89632329 None:intergenic
TTTATTGAGTGGGCAAGACC+AGG 0.534942 8_1:+89627546 None:intergenic
GCTCCTCGTTGTTTATTGAG+TGG 0.540846 8_1:+89627535 None:intergenic
TACCCTAAAACTTTAGGTGG+AGG 0.541302 8_1:-89628441 Msa1224580:CDS
CCTAACAATATATTTATCTG+TGG 0.541354 8_1:-89628589 Msa1224580:CDS
AATTACACCTGAAGCTAAGC+GGG 0.545193 8_1:-89628370 Msa1224580:intron
TTCTTGATCTCATGTCATTG+TGG 0.550457 8_1:-89627332 Msa1224580:three_prime_UTR
TTACACGGTCTTGGTGACTC+TGG 0.551312 8_1:-89632299 Msa1224580:CDS
TTTATCTGTGGGTTCAGTCA+AGG 0.556548 8_1:-89628577 Msa1224580:CDS
GTTTATAACGTTCCAAGCCG+TGG 0.557307 8_1:+89632472 None:intergenic
ACCGGAGCGTGAGGAGCAGA+AGG 0.561036 8_1:+89632209 None:intergenic
GTTAGATAAACTTACGGCGG+GGG 0.561428 8_1:+89632610 None:intergenic
GAAGTGAATAATGTCTTGAT+GGG 0.571272 8_1:+89632263 None:intergenic
CACCCATACTATGGTCCCAT+GGG 0.572624 8_1:-89627748 Msa1224580:CDS
TCAACCACCTTAGACCCTGC+CGG 0.575239 8_1:-89632666 Msa1224580:five_prime_UTR
TCATGAATGTCAAACCATGA+AGG 0.576481 8_1:+89631238 None:intergenic
GATACAGATTGAAAATTAGG+AGG 0.576640 8_1:+89627470 None:intergenic
AAAACAGTATTGTTCGAGGC+AGG 0.580046 8_1:-89627716 Msa1224580:CDS
TTGTACCCTAAAACTTTAGG+TGG 0.581553 8_1:-89628444 Msa1224580:CDS
GCTAGACTTACAGCAGTCAC+AGG 0.585127 8_1:+89631211 None:intergenic
CTAACAATATATTTATCTGT+GGG 0.585694 8_1:-89628588 Msa1224580:CDS
AGCCCATGGGACCATAGTAT+GGG 0.591504 8_1:+89627746 None:intergenic
TGACAAAACAGTATTGTTCG+AGG 0.612436 8_1:-89627720 Msa1224580:CDS
ATAGACAAGGAAGTAGCTGC+TGG 0.614205 8_1:-89628619 Msa1224580:CDS
TTCTCCGGCAGGGTCTAAGG+TGG 0.616037 8_1:+89632662 None:intergenic
GAAAATAGAGAAAGTCATAG+AGG 0.619475 8_1:+89627389 None:intergenic
AAAATTAGGAGGAACTCTGT+AGG 0.620221 8_1:+89627481 None:intergenic
TTAGATAAACTTACGGCGGG+GGG 0.632612 8_1:+89632611 None:intergenic
GAGAAAGTCATAGAGGTCAG+CGG 0.643692 8_1:+89627396 None:intergenic
ATCTGTGGGTTCAGTCAAGG+AGG 0.657320 8_1:-89628574 Msa1224580:intron
GTGCACCATCTATAAGAGAA+CGG 0.659599 8_1:+89628961 None:intergenic
TATAACGTTCCAAGCCGTGG+CGG 0.660943 8_1:+89632475 None:intergenic
ACGTGTTTGGAATTCCGCCA+CGG 0.661265 8_1:-89632489 Msa1224580:five_prime_UTR
TGTTCATGCTACAATAGACA+AGG 0.664047 8_1:-89628632 Msa1224580:CDS
CAGAACACTAGCCAATGTCA+AGG 0.665097 8_1:+89628467 None:intergenic
AAATTACACCTGAAGCTAAG+CGG 0.677674 8_1:-89628371 Msa1224580:CDS
TGCCCACTCAATAAACAACG+AGG 0.786416 8_1:-89627538 Msa1224580:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAACAAAATTTATTACA+GGG + chr8_1:89630309-89630328 None:intergenic 10.0%
!!! ATTTTAACAAAATTTATTAC+AGG + chr8_1:89630308-89630327 None:intergenic 10.0%
!! TTAAAAAAAATGAAAACATT+AGG - chr8_1:89629192-89629211 Msa1224580:intron 10.0%
!! TAAAAAAAATGAAAACATTA+GGG - chr8_1:89629193-89629212 Msa1224580:intron 10.0%
!! TTTCTAATATTTAAAAATTG+AGG + chr8_1:89629361-89629380 None:intergenic 10.0%
!! TAAAAAAAAATGAAAACATT+CGG + chr8_1:89629888-89629907 None:intergenic 10.0%
!!! ATTTTAACAAAATTTATTAC+AGG - chr8_1:89630308-89630327 Msa1224580:intron 10.0%
!!! TTTTAACAAAATTTATTACA+GGG - chr8_1:89630309-89630328 Msa1224580:intron 10.0%
!!! TTGAATTATTGTTTAATTTT+GGG - chr8_1:89630584-89630603 Msa1224580:intron 10.0%
!! ATTGAAAAGATATAAAAGAA+TGG + chr8_1:89627339-89627358 None:intergenic 15.0%
!! TGTAAAATTAGGTAAATATT+TGG + chr8_1:89628301-89628320 None:intergenic 15.0%
!!! CAACATAATTTTGTAAAATT+AGG + chr8_1:89628312-89628331 None:intergenic 15.0%
!! TTAATATCTCATTTGTAATT+TGG + chr8_1:89628554-89628573 None:intergenic 15.0%
!!! ATAATATCATTTTCTAAAGT+CGG + chr8_1:89628628-89628647 None:intergenic 15.0%
!!! ATTGATTGTTGATTATTATT+GGG - chr8_1:89628749-89628768 Msa1224580:intron 15.0%
!! TTTAACAAAATTTATTACAG+GGG + chr8_1:89630310-89630329 None:intergenic 15.0%
!! TAAAAATGAATACAAAAATC+TGG - chr8_1:89629134-89629153 Msa1224580:intron 15.0%
!!! AAGAATTTTTTTCATTTTTC+CGG + chr8_1:89629811-89629830 None:intergenic 15.0%
!! ATTATTTGTATTGAAAATTG+AGG + chr8_1:89629321-89629340 None:intergenic 15.0%
!! TTTATTTGTATTGAAAATTG+AGG - chr8_1:89629586-89629605 Msa1224580:intron 15.0%
!!! AAGAATTTTTTTCATTTTTC+CGG - chr8_1:89629811-89629830 Msa1224580:intron 15.0%
!! AAAAAAAAATGAAAACATTC+GGG + chr8_1:89629887-89629906 None:intergenic 15.0%
!! TAAAAATGAATACAAAAATC+TGG + chr8_1:89629134-89629153 None:intergenic 15.0%
!! TTTAACAAAATTTATTACAG+GGG - chr8_1:89630310-89630329 Msa1224580:intron 15.0%
!!! CTTTTACATGAAATAATAAT+GGG + chr8_1:89630383-89630402 None:intergenic 15.0%
!!! ACTTTTACATGAAATAATAA+TGG + chr8_1:89630384-89630403 None:intergenic 15.0%
!!! GTTGAATTATTGTTTAATTT+TGG - chr8_1:89630583-89630602 Msa1224580:intron 15.0%
!!! CTAAAAAGTATATATAACAA+AGG + chr8_1:89630913-89630932 None:intergenic 15.0%
!!! ATATATCCATTTTTCTATTA+AGG + chr8_1:89631397-89631416 None:intergenic 15.0%
!! TATTAACTTTCTGTATTTAA+AGG + chr8_1:89631814-89631833 None:intergenic 15.0%
!! TAAATCATTATGTTATATGT+AGG - chr8_1:89632025-89632044 Msa1224580:intron 15.0%
!! AAATCATTATGTTATATGTA+GGG - chr8_1:89632026-89632045 Msa1224580:intron 15.0%
!!! ATTTGATTTATTGAATTTTC+TGG - chr8_1:89632097-89632116 Msa1224580:intron 15.0%
!! GAAAAAATAACCAAATTATA+GGG + chr8_1:89632301-89632320 None:intergenic 15.0%
!! TGAAAAAATAACCAAATTAT+AGG + chr8_1:89632302-89632321 None:intergenic 15.0%
!! TCGATAATAATTAAGAAAAG+AGG + chr8_1:89627782-89627801 None:intergenic 20.0%
!! AAACTAAACCTATGTAAAAA+TGG + chr8_1:89627834-89627853 None:intergenic 20.0%
!! ACATATTAGTATAGCTTATA+TGG - chr8_1:89628080-89628099 Msa1224580:intron 20.0%
!! TTTATTAAAATATGACCATG+CGG - chr8_1:89628200-89628219 Msa1224580:intron 20.0%
!!! TAATATCATTTTCTAAAGTC+GGG + chr8_1:89628627-89628646 None:intergenic 20.0%
!!! TTTTGTTTATTCTTTGTAGA+TGG - chr8_1:89628653-89628672 Msa1224580:CDS 20.0%
!!! CATTGATTGTTGATTATTAT+TGG - chr8_1:89628748-89628767 Msa1224580:intron 20.0%
!! TTAACAAAATTTATTACAGG+GGG + chr8_1:89630311-89630330 None:intergenic 20.0%
!!! ATTTTTTTATATTGTACACG+TGG - chr8_1:89628980-89628999 Msa1224580:intron 20.0%
!!! TTCCATATTTTTTTCAATAC+CGG - chr8_1:89629247-89629266 Msa1224580:intron 20.0%
!! TTCGAAAAATAAAAACAATC+TGG - chr8_1:89629530-89629549 Msa1224580:intron 20.0%
!!! AAAAGATTAATTAGCTCTTT+GGG + chr8_1:89629637-89629656 None:intergenic 20.0%
!!! AAAAAGATTAATTAGCTCTT+TGG + chr8_1:89629638-89629657 None:intergenic 20.0%
!! GTATAACATGATTTATATAC+CGG + chr8_1:89629760-89629779 None:intergenic 20.0%
!! GGTATATAAATCATGTTATA+CGG - chr8_1:89629759-89629778 Msa1224580:intron 20.0%
!!! ATTTTTTTATATTGTACACG+TGG + chr8_1:89628980-89628999 None:intergenic 20.0%
!! TTAACAAAATTTATTACAGG+GGG - chr8_1:89630311-89630330 Msa1224580:intron 20.0%
!! TTGTACAGAATTAATATACA+GGG + chr8_1:89630414-89630433 None:intergenic 20.0%
!! ATTGTACAGAATTAATATAC+AGG + chr8_1:89630415-89630434 None:intergenic 20.0%
!! AATGTAGTAAGAATACAAAT+TGG - chr8_1:89630541-89630560 Msa1224580:intron 20.0%
!! TTACTAAGTTAACAATTAAG+AGG + chr8_1:89630748-89630767 None:intergenic 20.0%
!! ACATCATATAACAATCTTAA+AGG - chr8_1:89631074-89631093 Msa1224580:intron 20.0%
!! CACAGATAAATATATTGTTA+GGG + chr8_1:89631337-89631356 None:intergenic 20.0%
!! CTAACAATATATTTATCTGT+GGG - chr8_1:89631336-89631355 Msa1224580:intron 20.0%
!! TTATGTGGAAATATTTAGTT+TGG - chr8_1:89631696-89631715 Msa1224580:intron 20.0%
!!! AAATAAATATGCTGTTTCAA+AGG + chr8_1:89631734-89631753 None:intergenic 20.0%
!!! GTCGATAATATTTTCAATTT+AGG - chr8_1:89631972-89631991 Msa1224580:intron 20.0%
!! TATTGACATTTGGTATTATT+AGG - chr8_1:89632350-89632369 Msa1224580:intron 20.0%
!! TGTTGTTCACAATATTTAAT+AGG - chr8_1:89632562-89632581 Msa1224580:intron 20.0%
!! AAGAAAAGAAAAAGAAAAAG+AGG + chr8_1:89632636-89632655 None:intergenic 20.0%
!!! TCTTTTTCTTTTTCTTTTCT+TGG - chr8_1:89632635-89632654 Msa1224580:five_prime_UTR 20.0%
! AGAATGGTTAGATAAACTTA+CGG + chr8_1:89627323-89627342 None:intergenic 25.0%
!! TTATTATGAAACGTGGTTTT+GGG + chr8_1:89627544-89627563 None:intergenic 25.0%
!! ATTATTATGAAACGTGGTTT+TGG + chr8_1:89627545-89627564 None:intergenic 25.0%
! AGAAGAATTATTATGAAACG+TGG + chr8_1:89627551-89627570 None:intergenic 25.0%
!! CCATGTCTTTAAATTGTTTT+CGG - chr8_1:89628021-89628040 Msa1224580:intron 25.0%
! TAGTATAGCTTATATGGAAA+TGG - chr8_1:89628086-89628105 Msa1224580:intron 25.0%
! AAATATTTGGACATCTATTG+TGG + chr8_1:89628288-89628307 None:intergenic 25.0%
! ATAAATAAAACCAACTACCA+AGG + chr8_1:89628453-89628472 None:intergenic 25.0%
! AGGACAGATCATATATTAAT+AGG + chr8_1:89628489-89628508 None:intergenic 25.0%
!! TTCCGGTATTGAAAAAAATA+TGG + chr8_1:89629252-89629271 None:intergenic 25.0%
! AATTGAGGATAAAAACAATC+TGG + chr8_1:89629346-89629365 None:intergenic 25.0%
! AAAAATCATGTCCTAATAAC+AGG - chr8_1:89629712-89629731 Msa1224580:intron 25.0%
! ATACATTGTATCCTGTTATT+AGG + chr8_1:89629726-89629745 None:intergenic 25.0%
!!! TTCCAGATTTTTTTCAATAC+CGG + chr8_1:89629833-89629852 None:intergenic 25.0%
! TAACAAAATTTATTACAGGG+GGG - chr8_1:89630312-89630331 Msa1224580:intron 25.0%
! TTCTGTACAATTAATCATGA+AGG - chr8_1:89630424-89630443 Msa1224580:intron 25.0%
! TCTGTACAATTAATCATGAA+GGG - chr8_1:89630425-89630444 Msa1224580:intron 25.0%
!!! ATCCTTATTTTTAGTATGCT+TGG - chr8_1:89630479-89630498 Msa1224580:intron 25.0%
!!! TCCTTATTTTTAGTATGCTT+GGG - chr8_1:89630480-89630499 Msa1224580:intron 25.0%
!!! GTTTAATTTTGGGTTACTAA+AGG - chr8_1:89630594-89630613 Msa1224580:intron 25.0%
!! TGATTTTGTACATTTATCGT+GGG - chr8_1:89630655-89630674 Msa1224580:intron 25.0%
! TAGTAAGCAAACAATTATTG+AGG + chr8_1:89630817-89630836 None:intergenic 25.0%
! TATATGATGTTTACAAGACA+TGG + chr8_1:89631064-89631083 None:intergenic 25.0%
! TTTGAATTAAAAACAGAGAG+AGG + chr8_1:89631102-89631121 None:intergenic 25.0%
! CCACAGATAAATATATTGTT+AGG + chr8_1:89631338-89631357 None:intergenic 25.0%
! CCTAACAATATATTTATCTG+TGG - chr8_1:89631335-89631354 Msa1224580:intron 25.0%
! TCTGTAACAGATGAATTAAA+CGG + chr8_1:89631531-89631550 None:intergenic 25.0%
! TAAATTAGTGTCTTGACAAA+TGG + chr8_1:89632058-89632077 None:intergenic 25.0%
! AAGACACTAATTTATATAGC+TGG - chr8_1:89632064-89632083 Msa1224580:intron 25.0%
!!! AACTAACACCAATTTTTTCA+AGG + chr8_1:89632252-89632271 None:intergenic 25.0%
! TCCATATCAATATTGACATT+TGG - chr8_1:89632340-89632359 Msa1224580:exon 25.0%
! ACCAAATGTCAATATTGATA+TGG + chr8_1:89632344-89632363 None:intergenic 25.0%
! AGAGATACAGATTGAAAATT+AGG + chr8_1:89632460-89632479 None:intergenic 25.0%
!!! ATAACGAATCTTGTTTTCTC+CGG + chr8_1:89627280-89627299 None:intergenic 30.0%
CACTGAAACAATAAAGGAAA+AGG + chr8_1:89627415-89627434 None:intergenic 30.0%
GTGATTGTTAACAGTAGAAT+TGG + chr8_1:89627487-89627506 None:intergenic 30.0%
!! TATTATGAAACGTGGTTTTG+GGG + chr8_1:89627543-89627562 None:intergenic 30.0%
TTCTTCTTCTTCTGTAGTAA+CGG - chr8_1:89627567-89627586 Msa1224580:intron 30.0%
GAAGTGAATAATGTCTTGAT+GGG + chr8_1:89627664-89627683 None:intergenic 30.0%
AGAAGTGAATAATGTCTTGA+TGG + chr8_1:89627665-89627684 None:intergenic 30.0%
AATAATATGCATACAGTTGC+AGG + chr8_1:89627743-89627762 None:intergenic 30.0%
!! TGTTAGAGCTTTAAGGAAAA+AGG - chr8_1:89627993-89628012 Msa1224580:intron 30.0%
CCGAAAACAATTTAAAGACA+TGG + chr8_1:89628024-89628043 None:intergenic 30.0%
AAACTATCATGTAGAGCTTA+TGG + chr8_1:89628054-89628073 None:intergenic 30.0%
ACATGCTCATGGAATTAATT+AGG - chr8_1:89628393-89628412 Msa1224580:CDS 30.0%
! CAATGTATATTGATTGACTC+CGG - chr8_1:89629738-89629757 Msa1224580:intron 30.0%
! TTCCGGTATTGAAAAAAATC+TGG - chr8_1:89629828-89629847 Msa1224580:intron 30.0%
!!! CCTTATTTTTAGTATGCTTG+GGG - chr8_1:89630481-89630500 Msa1224580:intron 30.0%
! GTGATTTTGTACATTTATCG+TGG - chr8_1:89630654-89630673 Msa1224580:intron 30.0%
TTCACTTGAGAAAGATGAAA+AGG + chr8_1:89630878-89630897 None:intergenic 30.0%
!! CAATTACTTTTATCCTCTTC+AGG - chr8_1:89631168-89631187 Msa1224580:intron 30.0%
! TGTAGCATGAACATTTTGAA+CGG + chr8_1:89631285-89631304 None:intergenic 30.0%
!! AAATATGCTGTTTCAAAGGA+CGG + chr8_1:89631730-89631749 None:intergenic 30.0%
! CACATAAGGTTTTCTCTATT+GGG + chr8_1:89631789-89631808 None:intergenic 30.0%
! ACACATAAGGTTTTCTCTAT+TGG + chr8_1:89631790-89631809 None:intergenic 30.0%
! TGTATTTAAAGGCACACATA+AGG + chr8_1:89631803-89631822 None:intergenic 30.0%
TTAAAGAAAACCAGTTGAAC+TGG + chr8_1:89631876-89631895 None:intergenic 30.0%
!!! TCAACTGGTTTTCTTTAATC+AGG - chr8_1:89631878-89631897 Msa1224580:intron 30.0%
!!! CAACTGGTTTTCTTTAATCA+GGG - chr8_1:89631879-89631898 Msa1224580:intron 30.0%
TAATGATTTATTCGAGTGCA+AGG + chr8_1:89632015-89632034 None:intergenic 30.0%
! CAGGTCAACAAAATTTTAGA+TGG + chr8_1:89632133-89632152 None:intergenic 30.0%
!! CATCTAAAATTTTGTTGACC+TGG - chr8_1:89632131-89632150 Msa1224580:intron 30.0%
TATAACATTGTGTACATACC+AGG + chr8_1:89632152-89632171 None:intergenic 30.0%
!!! AATTTTTTCAAGGAAAGGAG+GGG + chr8_1:89632242-89632261 None:intergenic 30.0%
!!! CAATTTTTTCAAGGAAAGGA+GGG + chr8_1:89632243-89632262 None:intergenic 30.0%
!!! ACACCAATTTTTTCAAGGAA+AGG + chr8_1:89632247-89632266 None:intergenic 30.0%
ATTCCAAGTTCCCTATAATT+TGG - chr8_1:89632288-89632307 Msa1224580:CDS 30.0%
TAACCAAATTATAGGGAACT+TGG + chr8_1:89632294-89632313 None:intergenic 30.0%
TTGATATGGACAGAATTGTA+GGG + chr8_1:89632330-89632349 None:intergenic 30.0%
ATTGATATGGACAGAATTGT+AGG + chr8_1:89632331-89632350 None:intergenic 30.0%
GATACAGATTGAAAATTAGG+AGG + chr8_1:89632457-89632476 None:intergenic 30.0%
GAAAATAGAGAAAGTCATAG+AGG + chr8_1:89632538-89632557 None:intergenic 30.0%
CAAAAAGCAAAACTATACCA+AGG + chr8_1:89632679-89632698 None:intergenic 30.0%
!! TTTTTGTCTGCATTGGTATA+TGG - chr8_1:89632693-89632712 Msa1224580:five_prime_UTR 30.0%
ATGGTTAGATAAACTTACGG+CGG + chr8_1:89627320-89627339 None:intergenic 35.0%
ACACGTCACTGAAACAATAA+AGG + chr8_1:89627421-89627440 None:intergenic 35.0%
TATTGTTTCAGTGACGTGTT+TGG - chr8_1:89627422-89627441 Msa1224580:three_prime_UTR 35.0%
! TGTAGTAACGGAAAAACCAA+TGG - chr8_1:89627579-89627598 Msa1224580:intron 35.0%
!!! AGTTTTGTTCTGTGGTTACA+CGG - chr8_1:89627610-89627629 Msa1224580:intron 35.0%
!! TAATGTCTTGATGGGTTCAT+TGG + chr8_1:89627656-89627675 None:intergenic 35.0%
CATTTGGTACTTCTGAATTG+AGG + chr8_1:89627688-89627707 None:intergenic 35.0%
!! CTCAATTCAGAAGTACCAAA+TGG - chr8_1:89627686-89627705 Msa1224580:CDS 35.0%
!!! TGTCTGTGCCATTTTTACAT+AGG - chr8_1:89627823-89627842 Msa1224580:intron 35.0%
AAATTGAAGCTGCTCTGTTA+TGG - chr8_1:89627885-89627904 Msa1224580:intron 35.0%
AAGTCAATTCAAAATGACCC+TGG + chr8_1:89627932-89627951 None:intergenic 35.0%
! AACAGTCTCAAATGTGCTTT+TGG + chr8_1:89627973-89627992 None:intergenic 35.0%
! GACTGTTTGTTAGAGCTTTA+AGG - chr8_1:89627986-89628005 Msa1224580:intron 35.0%
ACAATTTCTGATTCTGAGTG+AGG - chr8_1:89628426-89628445 Msa1224580:CDS 35.0%
GAAAACTCAAGTCTAGACAT+AGG + chr8_1:89628521-89628540 None:intergenic 35.0%
! ATCACTTGAGATGCCATTTA+TGG - chr8_1:89628575-89628594 Msa1224580:CDS 35.0%
! TCACTTGAGATGCCATTTAT+GGG - chr8_1:89628576-89628595 Msa1224580:CDS 35.0%
TCATGAATGTCAAACCATGA+AGG + chr8_1:89628689-89628708 None:intergenic 35.0%
TTTATTACAGGGGGAAAAAC+CGG + chr8_1:89628813-89628832 None:intergenic 35.0%
ACGGAATCTTCAAATTACAG+GGG + chr8_1:89630281-89630300 None:intergenic 35.0%
GACGGAATCTTCAAATTACA+GGG + chr8_1:89630280-89630299 None:intergenic 35.0%
!! ATTAATTAGCTCTTTGGGAC+TGG + chr8_1:89629632-89629651 None:intergenic 35.0%
GACGGAATCTTCAAATTACA+GGG - chr8_1:89630280-89630299 Msa1224580:intron 35.0%
ACGGAATCTTCAAATTACAG+GGG - chr8_1:89630281-89630300 Msa1224580:intron 35.0%
CCCCAAGCATACTAAAAATA+AGG + chr8_1:89630484-89630503 None:intergenic 35.0%
AAATCACACTTACTGTCATG+TGG + chr8_1:89630641-89630660 None:intergenic 35.0%
TTCAACTATCCACTTGACAA+TGG - chr8_1:89630688-89630707 Msa1224580:intron 35.0%
TCAACTATCCACTTGACAAT+GGG - chr8_1:89630689-89630708 Msa1224580:intron 35.0%
CAGTTATAGTCAGTACAATG+TGG + chr8_1:89630843-89630862 None:intergenic 35.0%
!!! AAGCACCAAAGTTTTGGTTT+AGG + chr8_1:89630991-89631010 None:intergenic 35.0%
!! ACCAAAACTTTGGTGCTTAT+TGG - chr8_1:89630993-89631012 Msa1224580:intron 35.0%
! ACCAATAAGCACCAAAGTTT+TGG + chr8_1:89630997-89631016 None:intergenic 35.0%
TGTTCATGCTACAATAGACA+AGG - chr8_1:89631292-89631311 Msa1224580:intron 35.0%
! CATTTTTCTATTAAGGACGC+GGG + chr8_1:89631390-89631409 None:intergenic 35.0%
!! CCATTTTTCTATTAAGGACG+CGG + chr8_1:89631391-89631410 None:intergenic 35.0%
!! AAATGGTGACATTGTTTTGC+AGG - chr8_1:89631432-89631451 Msa1224580:intron 35.0%
CTGTTGTACCCTAAAACTTT+AGG - chr8_1:89631477-89631496 Msa1224580:intron 35.0%
TTGTACCCTAAAACTTTAGG+TGG - chr8_1:89631480-89631499 Msa1224580:intron 35.0%
AAATTACACCTGAAGCTAAG+CGG - chr8_1:89631553-89631572 Msa1224580:intron 35.0%
CACATAAACATTTGATGCAG+AGG + chr8_1:89631683-89631702 None:intergenic 35.0%
CTCTGCATCAAATGTTTATG+TGG - chr8_1:89631681-89631700 Msa1224580:intron 35.0%
! TAAGGTTTTCTCTATTGGGT+CGG + chr8_1:89631785-89631804 None:intergenic 35.0%
TGAACTGGAATGCTTTACTA+TGG + chr8_1:89631861-89631880 None:intergenic 35.0%
! TGGTTTTCTTTAATCAGGGT+CGG - chr8_1:89631883-89631902 Msa1224580:intron 35.0%
TGTATACCGATGACAACAAT+AGG + chr8_1:89631909-89631928 None:intergenic 35.0%
TGATAAGTGTAATCGTTCCA+AGG + chr8_1:89631937-89631956 None:intergenic 35.0%
TTATACAGACACCCATACTA+TGG - chr8_1:89632167-89632186 Msa1224580:intron 35.0%
!!! CCAATTTTTTCAAGGAAAGG+AGG + chr8_1:89632244-89632263 None:intergenic 35.0%
CCTCCTTTCCTTGAAAAAAT+TGG - chr8_1:89632241-89632260 Msa1224580:CDS 35.0%
TGATATGGACAGAATTGTAG+GGG + chr8_1:89632329-89632348 None:intergenic 35.0%
TGGTATTATTAGGCTTATCC+TGG - chr8_1:89632360-89632379 Msa1224580:intron 35.0%
AAAATTAGGAGGAACTCTGT+AGG + chr8_1:89632446-89632465 None:intergenic 35.0%
TTCTTGATCTCATGTCATTG+TGG - chr8_1:89632592-89632611 Msa1224580:intron 35.0%
TCTTGATCTCATGTCATTGT+GGG - chr8_1:89632593-89632612 Msa1224580:intron 35.0%
!!! GTTTTGCTTTTTGTCTGCAT+TGG - chr8_1:89632686-89632705 Msa1224580:five_prime_UTR 35.0%
TGGTTAGATAAACTTACGGC+GGG + chr8_1:89627319-89627338 None:intergenic 40.0%
! AGTAACGGAAAAACCAATGG+CGG - chr8_1:89627582-89627601 Msa1224580:intron 40.0%
AGCAGAAGGAAAAGACCATT+TGG + chr8_1:89627704-89627723 None:intergenic 40.0%
TGTAAAAATGGCACAGACAC+CGG + chr8_1:89627822-89627841 None:intergenic 40.0%
! ACAGAGCAGCTTCAATTTTG+TGG + chr8_1:89627883-89627902 None:intergenic 40.0%
CTGGATAATATTCCCAGAAG+GGG + chr8_1:89627913-89627932 None:intergenic 40.0%
CCTGGATAATATTCCCAGAA+GGG + chr8_1:89627914-89627933 None:intergenic 40.0%
! CCTTCTGGGAATATTATCCA+GGG - chr8_1:89627912-89627931 Msa1224580:intron 40.0%
AGTCTAGACATAGGTGGAAT+AGG + chr8_1:89628512-89628531 None:intergenic 40.0%
AACTCAAGTCTAGACATAGG+TGG + chr8_1:89628518-89628537 None:intergenic 40.0%
! CTAGACTTGAGTTTTCTGCT+TGG - chr8_1:89628525-89628544 Msa1224580:intron 40.0%
GCTAATAGGTTGCCCATAAA+TGG + chr8_1:89628591-89628610 None:intergenic 40.0%
GAAGCTGATTGCAAGCTAAT+AGG + chr8_1:89628605-89628624 None:intergenic 40.0%
! ATGGTTCTGTAATGCCTTCA+TGG - chr8_1:89628672-89628691 Msa1224580:CDS 40.0%
CGACGGAATCTTCAAATTAC+AGG + chr8_1:89630279-89630298 None:intergenic 40.0%
!! TTCACCTTTTTCTGATGACG+TGG + chr8_1:89630206-89630225 None:intergenic 40.0%
GTCATCAGAAAAAGGTGAAG+TGG - chr8_1:89630207-89630226 Msa1224580:intron 40.0%
CGACGGAATCTTCAAATTAC+AGG - chr8_1:89630279-89630298 Msa1224580:intron 40.0%
TTTATTACAGGGGGGAAAAC+CGG - chr8_1:89630320-89630339 Msa1224580:intron 40.0%
TGTTTACCCCCCTGTAATTT+GGG + chr8_1:89630352-89630371 None:intergenic 40.0%
CACAGCAGAAATGTGGAAAA+TGG + chr8_1:89630518-89630537 None:intergenic 40.0%
! CATTTTGCACAGCAGAAATG+TGG + chr8_1:89630525-89630544 None:intergenic 40.0%
! TTTGGGTTACTAAAGGAGAC+TGG - chr8_1:89630601-89630620 Msa1224580:intron 40.0%
TTGTACATTTATCGTGGGTG+TGG - chr8_1:89630660-89630679 Msa1224580:intron 40.0%
AACTCATTCCCATTGTCAAG+TGG + chr8_1:89630700-89630719 None:intergenic 40.0%
TTGCACCGTTCTCTTATAGA+TGG - chr8_1:89630958-89630977 Msa1224580:intron 40.0%
GTGCACCATCTATAAGAGAA+CGG + chr8_1:89630966-89630985 None:intergenic 40.0%
CACCTCCTAAACCAAAACTT+TGG - chr8_1:89630983-89631002 Msa1224580:intron 40.0%
!!! CACCAAAGTTTTGGTTTAGG+AGG + chr8_1:89630988-89631007 None:intergenic 40.0%
CACAAGTCAAATTGCTCAAC+AGG + chr8_1:89631148-89631167 None:intergenic 40.0%
TCAACATCATCATCCTGAAG+AGG + chr8_1:89631184-89631203 None:intergenic 40.0%
AGCAAACTATTCTCGTCGTT+TGG + chr8_1:89631257-89631276 None:intergenic 40.0%
TTTATCTGTGGGTTCAGTCA+AGG - chr8_1:89631347-89631366 Msa1224580:intron 40.0%
CCGCGTCCTTAATAGAAAAA+TGG - chr8_1:89631388-89631407 Msa1224580:intron 40.0%
ATGAGCAACCTGCTGATAAA+TGG - chr8_1:89631415-89631434 Msa1224580:intron 40.0%
CAATGTCACCATTTATCAGC+AGG + chr8_1:89631426-89631445 None:intergenic 40.0%
TACCCTAAAACTTTAGGTGG+AGG - chr8_1:89631483-89631502 Msa1224580:intron 40.0%
AATTACACCTGAAGCTAAGC+GGG - chr8_1:89631554-89631573 Msa1224580:intron 40.0%
! GTAAAGCATTCCAGTTCAAC+TGG - chr8_1:89631863-89631882 Msa1224580:intron 40.0%
CATCGGTATACAATTGTCCT+TGG - chr8_1:89631917-89631936 Msa1224580:intron 40.0%
TGCAAGGCTCATATCAAAAG+TGG + chr8_1:89631999-89632018 None:intergenic 40.0%
! TGGTGTTAGTTGCGAGTTTA+AGG - chr8_1:89632261-89632280 Msa1224580:CDS 40.0%
CTCCTCGTTGTTTATTGAGT+GGG + chr8_1:89632391-89632410 None:intergenic 40.0%
! AGCTAAAGCATCTTGAGTCT+TGG - chr8_1:89632409-89632428 Msa1224580:intron 40.0%
CTCTCAAAAACACTACTCCT+TGG - chr8_1:89632659-89632678 Msa1224580:five_prime_UTR 40.0%
!!! GAATCTTGTTTTCTCCGGCA+GGG + chr8_1:89627275-89627294 None:intergenic 45.0%
TTAGATAAACTTACGGCGGG+GGG + chr8_1:89627316-89627335 None:intergenic 45.0%
GTTAGATAAACTTACGGCGG+GGG + chr8_1:89627317-89627336 None:intergenic 45.0%
GGTTAGATAAACTTACGGCG+GGG + chr8_1:89627318-89627337 None:intergenic 45.0%
GTTTATAACGTTCCAAGCCG+TGG + chr8_1:89627455-89627474 None:intergenic 45.0%
! CCCTTCTGGGAATATTATCC+AGG - chr8_1:89627911-89627930 Msa1224580:intron 45.0%
CCCTGGATAATATTCCCAGA+AGG + chr8_1:89627915-89627934 None:intergenic 45.0%
CATACGATATGAAAGCCGCA+TGG + chr8_1:89628218-89628237 None:intergenic 45.0%
TGTGTGTAATGCGCTAAGGA+CGG + chr8_1:89628376-89628395 None:intergenic 45.0%
AGCATGTGTGTAATGCGCTA+AGG + chr8_1:89628380-89628399 None:intergenic 45.0%
CTAGACATAGGTGGAATAGG+AGG + chr8_1:89628509-89628528 None:intergenic 45.0%
TGTTTACCCCCCCTGTAATT+TGG - chr8_1:89628780-89628799 Msa1224580:intron 45.0%
GTTTACCCCCCCTGTAATTT+GGG - chr8_1:89628781-89628800 Msa1224580:intron 45.0%
GTCATCAGAAAAAGGTGACG+TGG + chr8_1:89628926-89628945 None:intergenic 45.0%
!! GTCACCTTTTTCTGATGACG+TGG - chr8_1:89628927-89628946 Msa1224580:intron 45.0%
AGTGCCACGTCATCAGAAAA+AGG + chr8_1:89628934-89628953 None:intergenic 45.0%
GTGTTTACCCCCCTGTAATT+TGG + chr8_1:89630353-89630372 None:intergenic 45.0%
ATAGACAAGGAAGTAGCTGC+TGG - chr8_1:89631305-89631324 Msa1224580:intron 45.0%
! TTTTGCAGGTGCCTTGACAT+TGG - chr8_1:89631446-89631465 Msa1224580:intron 45.0%
CAGAACACTAGCCAATGTCA+AGG + chr8_1:89631460-89631479 None:intergenic 45.0%
! CGCCTCCACCTAAAGTTTTA+GGG + chr8_1:89631488-89631507 None:intergenic 45.0%
ATAAGTACCCGCTTAGCTTC+AGG + chr8_1:89631564-89631583 None:intergenic 45.0%
GCAGAGGCAATCAGAGAAAA+TGG + chr8_1:89631667-89631686 None:intergenic 45.0%
! GTCGGTGTACTTTTGATGGA+TGG + chr8_1:89631767-89631786 None:intergenic 45.0%
! TTGGGTCGGTGTACTTTTGA+TGG + chr8_1:89631771-89631790 None:intergenic 45.0%
TTTATTGAGTGGGCAAGACC+AGG + chr8_1:89632381-89632400 None:intergenic 45.0%
TGCCCACTCAATAAACAACG+AGG - chr8_1:89632386-89632405 Msa1224580:intron 45.0%
GCTCCTCGTTGTTTATTGAG+TGG + chr8_1:89632392-89632411 None:intergenic 45.0%
GAGAAAGTCATAGAGGTCAG+CGG + chr8_1:89632531-89632550 None:intergenic 45.0%
!!! TTCATTTTTATTAATTTTTT+CGG + chr8_1:89629957-89629976 None:intergenic 5.0%
!! TAAAAATAAAAAATAAAATC+TGG - chr8_1:89629164-89629183 Msa1224580:intron 5.0%
!! ACAAATTTATTTAAAAATTT+AGG + chr8_1:89629441-89629460 None:intergenic 5.0%
!!! AAAAAAATTCTTTTTTTTTA+CGG + chr8_1:89629277-89629296 None:intergenic 5.0%
!! TAAAAATAAAAAATAAAATC+TGG + chr8_1:89629164-89629183 None:intergenic 5.0%
!!! TTCATTTTTATTAATTTTTT+CGG - chr8_1:89629957-89629976 Msa1224580:intron 5.0%
!!! CGAATCTTGTTTTCTCCGGC+AGG + chr8_1:89627276-89627295 None:intergenic 50.0%
GATTCGTTATACGCTCCGTC+AGG - chr8_1:89627290-89627309 Msa1224580:three_prime_UTR 50.0%
! ACGTGTTTGGAATTCCGCCA+CGG - chr8_1:89627435-89627454 Msa1224580:three_prime_UTR 50.0%
TATAACGTTCCAAGCCGTGG+CGG + chr8_1:89627452-89627471 None:intergenic 50.0%
ACAAAACTTCGAGCCGCCAT+TGG + chr8_1:89627598-89627617 None:intergenic 50.0%
!!! CGGCTCGAAGTTTTGTTCTG+TGG - chr8_1:89627602-89627621 Msa1224580:intron 50.0%
GTTCTGTGGTTACACGGTCT+TGG - chr8_1:89627616-89627635 Msa1224580:intron 50.0%
! TTACACGGTCTTGGTGACTC+TGG - chr8_1:89627625-89627644 Msa1224580:intron 50.0%
!! GTCTTGATGGGTTCATTGGC+AGG + chr8_1:89627652-89627671 None:intergenic 50.0%
TGCATACAGTTGCAGGTGAC+CGG + chr8_1:89627736-89627755 None:intergenic 50.0%
TCTGTTATGGCTCCCCTTCT+GGG - chr8_1:89627898-89627917 Msa1224580:intron 50.0%
GTGTGTAATGCGCTAAGGAC+GGG + chr8_1:89628375-89628394 None:intergenic 50.0%
GCGCATTACACACATGCTCA+TGG - chr8_1:89628382-89628401 Msa1224580:CDS 50.0%
CTGATTCTGAGTGAGGTCCT+TGG - chr8_1:89628433-89628452 Msa1224580:CDS 50.0%
! TGAGTGAGGTCCTTGGTAGT+TGG - chr8_1:89628440-89628459 Msa1224580:CDS 50.0%
GCTAGACTTACAGCAGTCAC+AGG + chr8_1:89628716-89628735 None:intergenic 50.0%
AACTCGCCCAAATTACAGGG+GGG + chr8_1:89630343-89630362 None:intergenic 50.0%
GAACTCGCCCAAATTACAGG+GGG + chr8_1:89630342-89630361 None:intergenic 50.0%
GGAACTCGCCCAAATTACAG+GGG + chr8_1:89630341-89630360 None:intergenic 50.0%
CGGAACTCGCCCAAATTACA+GGG + chr8_1:89630340-89630359 None:intergenic 50.0%
CCTGTAATTTGGGCGAGTTC+CGG - chr8_1:89628791-89628810 Msa1224580:intron 50.0%
CGTGCCACGTCATCAGAAAA+AGG - chr8_1:89630199-89630218 Msa1224580:intron 50.0%
CCTGTAATTTGGGCGAGTTC+CGG + chr8_1:89628791-89628810 None:intergenic 50.0%
CGGAACTCGCCCAAATTACA+GGG - chr8_1:89630340-89630359 Msa1224580:intron 50.0%
GGAACTCGCCCAAATTACAG+GGG - chr8_1:89630341-89630360 Msa1224580:intron 50.0%
GAACTCGCCCAAATTACAGG+GGG - chr8_1:89630342-89630361 Msa1224580:intron 50.0%
AACTCGCCCAAATTACAGGG+GGG - chr8_1:89630343-89630362 Msa1224580:intron 50.0%
GGTTACTAAAGGAGACTGGC+AGG - chr8_1:89630605-89630624 Msa1224580:intron 50.0%
ATCTGTGGGTTCAGTCAAGG+AGG - chr8_1:89631350-89631369 Msa1224580:intron 50.0%
! GCGCCTCCACCTAAAGTTTT+AGG + chr8_1:89631489-89631508 None:intergenic 50.0%
!! AGGCGCTGTTTTCAGTGGTT+GGG - chr8_1:89631503-89631522 Msa1224580:intron 50.0%
GGTCGGCCTATTGTTGTCAT+CGG - chr8_1:89631900-89631919 Msa1224580:intron 50.0%
ACACCCATACTATGGTCCCA+TGG - chr8_1:89632175-89632194 Msa1224580:intron 50.0%
CACCCATACTATGGTCCCAT+GGG - chr8_1:89632176-89632195 Msa1224580:intron 50.0%
AGCCCATGGGACCATAGTAT+GGG + chr8_1:89632181-89632200 None:intergenic 50.0%
! TGTTTTGTCAGCCAGCCCAT+GGG + chr8_1:89632194-89632213 None:intergenic 50.0%
TCAACCACCTTAGACCCTGC+CGG - chr8_1:89627258-89627277 Msa1224580:three_prime_UTR 55.0%
! GTTTTCTCCGGCAGGGTCTA+AGG + chr8_1:89627268-89627287 None:intergenic 55.0%
! TTTGGAATTCCGCCACGGCT+TGG - chr8_1:89627440-89627459 Msa1224580:three_prime_UTR 55.0%
GATGCTGAGCTTCTCGTGTC+CGG - chr8_1:89627800-89627819 Msa1224580:intron 55.0%
CTCTGTTATGGCTCCCCTTC+TGG - chr8_1:89627897-89627916 Msa1224580:intron 55.0%
TAATGCGCTAAGGACGGGTC+TGG + chr8_1:89628370-89628389 None:intergenic 55.0%
ACTCGCCCAAATTACAGGGG+GGG + chr8_1:89630344-89630363 None:intergenic 55.0%
CCGGAACTCGCCCAAATTAC+AGG + chr8_1:89630339-89630358 None:intergenic 55.0%
! TTGACCAGGGGGGTTTTCGA+CGG + chr8_1:89630262-89630281 None:intergenic 55.0%
AAAACCCCCCTGGTCAAACC+TGG - chr8_1:89628874-89628893 Msa1224580:intron 55.0%
AAAACCCCCCTGGTCAAACC+TGG + chr8_1:89628874-89628893 None:intergenic 55.0%
! TTGACCAGGGGGGTTTTCGA+CGG - chr8_1:89630262-89630281 Msa1224580:intron 55.0%
CCGGAACTCGCCCAAATTAC+AGG - chr8_1:89630339-89630358 Msa1224580:intron 55.0%
!!! GAGGCGCTGTTTTCAGTGGT+TGG - chr8_1:89631502-89631521 Msa1224580:intron 55.0%
CAGCCCATGGGACCATAGTA+TGG + chr8_1:89632182-89632201 None:intergenic 55.0%
CATACTATGGTCCCATGGGC+TGG - chr8_1:89632180-89632199 Msa1224580:intron 55.0%
! CTGTTTTGTCAGCCAGCCCA+TGG + chr8_1:89632195-89632214 None:intergenic 55.0%
TTCTCCGGCAGGGTCTAAGG+TGG + chr8_1:89627265-89627284 None:intergenic 60.0%
TCCTTCTGCTCCTCACGCTC+CGG - chr8_1:89627714-89627733 Msa1224580:CDS 60.0%
AAGGACGGGTCTGGTGGAAC+TGG + chr8_1:89628361-89628380 None:intergenic 60.0%
GATTCCGTCGAAAACCCCCC+TGG - chr8_1:89628864-89628883 Msa1224580:intron 60.0%
TGTGCCAGGTTTGACCAGGG+GGG + chr8_1:89630252-89630271 None:intergenic 60.0%
GTGTGCCAGGTTTGACCAGG+GGG + chr8_1:89630251-89630270 None:intergenic 60.0%
CGTGTGCCAGGTTTGACCAG+GGG + chr8_1:89630250-89630269 None:intergenic 60.0%
GCGTGTGCCAGGTTTGACCA+GGG + chr8_1:89630249-89630268 None:intergenic 60.0%
GCGTGTGCCAGGTTTGACCA+GGG - chr8_1:89630249-89630268 Msa1224580:intron 60.0%
CGTGTGCCAGGTTTGACCAG+GGG - chr8_1:89630250-89630269 Msa1224580:intron 60.0%
GTGTGCCAGGTTTGACCAGG+GGG - chr8_1:89630251-89630270 Msa1224580:intron 60.0%
TGTGCCAGGTTTGACCAGGG+GGG - chr8_1:89630252-89630271 Msa1224580:intron 60.0%
GATTCCGTCGAAAACCCCCC+TGG + chr8_1:89628864-89628883 None:intergenic 60.0%
!!! GGTGGAGGCGCTGTTTTCAG+TGG - chr8_1:89631498-89631517 Msa1224580:intron 60.0%
ACCGGAGCGTGAGGAGCAGA+AGG + chr8_1:89627718-89627737 None:intergenic 65.0%
TTGCAGGTGACCGGAGCGTG+AGG + chr8_1:89627727-89627746 None:intergenic 65.0%
TGCGCTAAGGACGGGTCTGG+TGG + chr8_1:89628367-89628386 None:intergenic 65.0%
GGCGTGTGCCAGGTTTGACC+AGG + chr8_1:89630248-89630267 None:intergenic 65.0%
GGTCAAACCTGGCACACGCC+AGG - chr8_1:89628885-89628904 Msa1224580:intron 65.0%
ATCAGCACCTGGCGTGTGCC+AGG + chr8_1:89630238-89630257 None:intergenic 65.0%
!! GCACACGCCAGGTGCTGATG+TGG - chr8_1:89628896-89628915 Msa1224580:intron 65.0%
TGGCACGCCACATCAGCACC+TGG + chr8_1:89630227-89630246 None:intergenic 65.0%
TGGCACGCCACATCAGCACC+TGG - chr8_1:89630227-89630246 Msa1224580:intron 65.0%
!! GCACACGCCAGGTGCTGATG+TGG + chr8_1:89628896-89628915 None:intergenic 65.0%
ATCAGCACCTGGCGTGTGCC+AGG - chr8_1:89630238-89630257 Msa1224580:intron 65.0%
GGTCAAACCTGGCACACGCC+AGG + chr8_1:89628885-89628904 None:intergenic 65.0%
GGCGTGTGCCAGGTTTGACC+AGG - chr8_1:89630248-89630267 Msa1224580:intron 65.0%
ACTTACGGCGGGGGGCCTGA+CGG + chr8_1:89627308-89627327 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 89627215 89632731 89627215 ID=Msa1224580;Name=Msa1224580
chr8_1 mRNA 89627215 89632731 89627215 ID=Msa1224580-mRNA-1;Parent=Msa1224580;Name=Msa1224580-mRNA-1;_AED=0.09;_eAED=0.09;_QI=183|0.75|0.88|0.88|0.75|0.66|9|270|235
chr8_1 exon 89627215 89627574 89627215 ID=Msa1224580-mRNA-1:exon:32553;Parent=Msa1224580-mRNA-1
chr8_1 exon 89627664 89627771 89627664 ID=Msa1224580-mRNA-1:exon:32552;Parent=Msa1224580-mRNA-1
chr8_1 exon 89628371 89628492 89628371 ID=Msa1224580-mRNA-1:exon:32551;Parent=Msa1224580-mRNA-1
chr8_1 exon 89628575 89628698 89628575 ID=Msa1224580-mRNA-1:exon:32550;Parent=Msa1224580-mRNA-1
chr8_1 exon 89628932 89628991 89628932 ID=Msa1224580-mRNA-1:exon:32549;Parent=Msa1224580-mRNA-1
chr8_1 exon 89631222 89631274 89631222 ID=Msa1224580-mRNA-1:exon:32548;Parent=Msa1224580-mRNA-1
chr8_1 exon 89632198 89632362 89632198 ID=Msa1224580-mRNA-1:exon:32547;Parent=Msa1224580-mRNA-1
chr8_1 exon 89632452 89632513 89632452 ID=Msa1224580-mRNA-1:exon:32546;Parent=Msa1224580-mRNA-1
chr8_1 exon 89632625 89632731 89632625 ID=Msa1224580-mRNA-1:exon:32545;Parent=Msa1224580-mRNA-1
chr8_1 five_prime_UTR 89632625 89632731 89632625 ID=Msa1224580-mRNA-1:five_prime_utr;Parent=Msa1224580-mRNA-1
chr8_1 five_prime_UTR 89632452 89632513 89632452 ID=Msa1224580-mRNA-1:five_prime_utr;Parent=Msa1224580-mRNA-1
chr8_1 five_prime_UTR 89632349 89632362 89632349 ID=Msa1224580-mRNA-1:five_prime_utr;Parent=Msa1224580-mRNA-1
chr8_1 CDS 89632198 89632348 89632198 ID=Msa1224580-mRNA-1:cds;Parent=Msa1224580-mRNA-1
chr8_1 CDS 89631222 89631274 89631222 ID=Msa1224580-mRNA-1:cds;Parent=Msa1224580-mRNA-1
chr8_1 CDS 89628932 89628991 89628932 ID=Msa1224580-mRNA-1:cds;Parent=Msa1224580-mRNA-1
chr8_1 CDS 89628575 89628698 89628575 ID=Msa1224580-mRNA-1:cds;Parent=Msa1224580-mRNA-1
chr8_1 CDS 89628371 89628492 89628371 ID=Msa1224580-mRNA-1:cds;Parent=Msa1224580-mRNA-1
chr8_1 CDS 89627664 89627771 89627664 ID=Msa1224580-mRNA-1:cds;Parent=Msa1224580-mRNA-1
chr8_1 CDS 89627485 89627574 89627485 ID=Msa1224580-mRNA-1:cds;Parent=Msa1224580-mRNA-1
chr8_1 three_prime_UTR 89627215 89627484 89627215 ID=Msa1224580-mRNA-1:three_prime_utr;Parent=Msa1224580-mRNA-1
Gene Sequence

>Msa1224580

ATGGCGGCTCGAAGTTTTGTTCTGTGGTTACACGGTCTTGGTGACTCTGGTCCTGCCAATGAACCCATCAAGACATTATTCACTTCTCCTCAATTCAGAAGTACCAAATGGTCTTTTCCTTCTGCTCCTCACGCTCCGGTCACCTGCAACTATGGTTCTGTAATGCCTTCATGGTTTGACATTCATGAGATTCCTGTGACTGCTAATTTGCACCGTTCTCTTATAGATGGTGCACCTCCTAAACCAAAACTTTGGTGCTTATTGAATTCTCCAAACGACGAGAATAGTTTGCTTAAAGCCGTTCAAAATGTTCATGCTACAATAGACAAGGAAGTAGCTGCTGGCACAAACCCTAACAATATATTTATCTGTGGGTTCAGTCAAGGAGGTGCCTTGACATTGGCTAGTGTTCTGTTGTACCCTAAAACTTTAGGTGGAGGCGCTGTTTTCAGTGGTTGGGTTCCGTTTAATTCATCTGTTACAGAACAAATTACACCTGAAGCTAAGCGGACACCCATACTATGGTCCCATGGGCTGGCTGACAAAACAGTATTGTTCGAGGCAGGACAAGCAGCCCCTCCTTTCCTTGAAAAAATTGGTGTTAGTTGCGAGTTTAAGGCTTATCCTGGTCTTGCCCACTCAATAAACAACGAGGAGCTAAAGCATCTTGAGTCTTGGATCAAAGCACACCTACAGAGTTCCTCCTAA

Protein sequence

>Msa1224580

MAARSFVLWLHGLGDSGPANEPIKTLFTSPQFRSTKWSFPSAPHAPVTCNYGSVMPSWFDIHEIPVTANLHRSLIDGAPPKPKLWCLLNSPNDENSLLKAVQNVHATIDKEVAAGTNPNNIFICGFSQGGALTLASVLLYPKTLGGGAVFSGWVPFNSSVTEQITPEAKRTPILWSHGLADKTVLFEAGQAAPPFLEKIGVSCEFKAYPGLAHSINNEELKHLESWIKAHLQSSS*