AlfalfaGEDB | Msa1386040

M. sativa cultivar zhongmu-4 / Msa1386040

KEGG: -
GO: GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659
PFAM: PF00083.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1386040	XP_003593550.1	97.901	524	9	2	1	523	1	523	0.0	1024

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1386040	sp\|Q0WUU6\|PLT4_ARATH	66.219	521	171	3	5	522	4	522	0.0	692

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1386040	G7IPQ6	97.901	524	9	2	1	523	1	523	0.0	1024

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0187030	Msa1386040	0.801285	9.679771e-49	-8.615850e-47
Msa0251080	Msa1386040	0.820087	8.254576e-53	-8.615850e-47
Msa0261340	Msa1386040	0.804769	1.842993e-49	-8.615850e-47
Msa0272440	Msa1386040	0.991534	3.687195e-188	-8.615850e-47
Msa0300270	Msa1386040	0.805157	1.528981e-49	-8.615850e-47
Msa0312550	Msa1386040	0.977581	4.567171e-144	-8.615850e-47
Msa0358890	Msa1386040	0.807461	4.997066e-50	-8.615850e-47
Msa0363200	Msa1386040	0.802222	6.215234e-49	-8.615850e-47
Msa0452920	Msa1386040	0.801202	1.006574e-48	-8.615850e-47
Msa0498060	Msa1386040	0.818748	1.667189e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1386040	MtrunA17_Chr2g0282031	97.901	524	9	2	1	523	1	523	0.0	1024
Msa1386040	MtrunA17_Chr4g0021771	66.858	522	166	2	7	522	4	524	0.0	708
Msa1386040	MtrunA17_Chr4g0034681	52.429	494	214	5	45	517	22	515	1.36e-178	512
Msa1386040	MtrunA17_Chr3g0144361	51.423	492	219	4	29	504	8	495	1.78e-175	504
Msa1386040	MtrunA17_Chr4g0036021	52.017	471	213	4	45	502	19	489	8.97e-166	479
Msa1386040	MtrunA17_Chr6g0485661	48.542	480	239	3	21	492	23	502	2.50e-163	473
Msa1386040	MtrunA17_Chr8g0390521	48.739	476	229	5	34	500	2	471	2.44e-154	450
Msa1386040	MtrunA17_Chr8g0373531	48.560	486	234	4	50	519	16	501	4.16e-154	449
Msa1386040	MtrunA17_Chr5g0432581	48.319	476	230	5	50	509	16	491	5.23e-151	441
Msa1386040	MtrunA17_Chr5g0403831	41.116	484	259	6	50	513	28	505	8.79e-117	354

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1386040	AT2G20780.1	66.219	521	171	3	5	522	4	522	0.0	692
Msa1386040	AT2G20780.2	68.707	441	136	1	82	522	26	464	0.0	613
Msa1386040	AT3G18830.1	49.495	495	233	5	39	517	22	515	2.41e-164	477
Msa1386040	AT2G16120.1	47.764	492	234	4	46	514	19	510	5.62e-158	460
Msa1386040	AT2G16130.1	46.800	500	247	4	31	511	1	500	1.80e-157	458
Msa1386040	AT4G36670.1	49.580	476	225	3	50	510	14	489	3.85e-156	454
Msa1386040	AT2G18480.1	51.398	465	212	3	50	500	19	483	4.11e-153	447
Msa1386040	AT2G43330.1	34.273	461	286	5	50	501	28	480	3.85e-73	241
Msa1386040	AT5G16150.2	35.565	478	292	8	25	498	75	540	3.65e-72	239
Msa1386040	AT5G16150.1	35.565	478	292	8	25	498	75	540	3.65e-72	239

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Find 149 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTTCTCCTGCCATTGCT+AGG	0.457205	tig0020780:-80793	Msa1386040:CDS
AAGAAGAAGGGTTGGCAACC+AGG	0.445784	tig0020780:-82097	Msa1386040:CDS
AAGCCTCAAAGGAAATATTT+CGG	0.407884	tig0020780:+80031	None:intergenic
AATATTGAAGGAGAACAATG+GGG	0.673727	tig0020780:-82226	Msa1386040:exon
AATTCTGTTCTTCTCGGCTA+TGG	0.438550	tig0020780:-82023	Msa1386040:intron
AATTTCTCCTGCCATTGCTA+GGG	0.500079	tig0020780:-80792	Msa1386040:CDS
ACAAGAAAGTGAGGTAGAAA+TGG	0.359850	tig0020780:-79784	Msa1386040:CDS
ACAAGCCATCTTGGAGATTC+AGG	0.338176	tig0020780:+80605	None:intergenic
ACATGCAAAGATATATTTCT+TGG	0.325320	tig0020780:+82064	None:intergenic
ACCAAAGCAATAACAGTAGC+CGG	0.542438	tig0020780:-79930	Msa1386040:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGAATATTGAAGGAGAACAA+TGG	-	tig0020780:79500-79519	Msa1386040:three_prime_UTR	30.0%
GAATATTGAAGGAGAACAAT+GGG	-	tig0020780:79501-79520	Msa1386040:three_prime_UTR	30.0%
AATATTGAAGGAGAACAATG+GGG	-	tig0020780:79502-79521	Msa1386040:three_prime_UTR	30.0%
ATGTACAAGAAAATGGGAAT+GGG	-	tig0020780:79532-79551	Msa1386040:three_prime_UTR	30.0%
TACTGTATAGTACAAAGTTC+TGG	-	tig0020780:80206-80225	Msa1386040:CDS	30.0%
ACTTAAATCTGGTAATCGAT+AGG	-	tig0020780:80464-80483	Msa1386040:CDS	30.0%
AACAAGAAACTAATAGGTTC+TGG	+	tig0020780:80490-80509	None:intergenic	30.0%
AATTACTACATAAACATCGC+TGG	-	tig0020780:80542-80561	Msa1386040:CDS	30.0%
TGGAGCAATTATATTCATTC+AGG	-	tig0020780:80651-80670	Msa1386040:CDS	30.0%
AGCAATTATATTCATTCAGG+AGG	-	tig0020780:80654-80673	Msa1386040:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0020780	gene	79329	82421	79329	ID=Msa1386040;Name=Msa1386040
tig0020780	mRNA	79329	82421	79329	ID=Msa1386040-mRNA-1;Parent=Msa1386040;Name=Msa1386040-mRNA-1;_AED=0.02;_eAED=0.02;_QI=190\|1\|1\|1\|1\|1\|2\|423\|523
tig0020780	exon	79329	81115	79329	ID=Msa1386040-mRNA-1:exon:9941;Parent=Msa1386040-mRNA-1
tig0020780	exon	82024	82421	82024	ID=Msa1386040-mRNA-1:exon:9940;Parent=Msa1386040-mRNA-1
tig0020780	five_prime_UTR	82232	82421	82232	ID=Msa1386040-mRNA-1:five_prime_utr;Parent=Msa1386040-mRNA-1
tig0020780	CDS	82024	82231	82024	ID=Msa1386040-mRNA-1:cds;Parent=Msa1386040-mRNA-1
tig0020780	CDS	79752	81115	79752	ID=Msa1386040-mRNA-1:cds;Parent=Msa1386040-mRNA-1
tig0020780	three_prime_UTR	79329	79751	79329	ID=Msa1386040-mRNA-1:three_prime_utr;Parent=Msa1386040-mRNA-1

Gene Sequence

>Msa1386040

ATGGGGTTGGTTGATGTACAAGAAAATGGGAATGGGAATGGAGATGTGATATCTGAGATTCCATTAGGGACTAAAAATAAGTACATTAGGATGACATCTGAAGAGGAAGAAGAAGAAGAAGGGTTGGCAACCAGGAAGCATGATTCCAAGAAATATATCTTTGCATGTGCTGTTTTTGCTTCTCTCAATTCTGTTCTTCTCGGCTATGACGTTGGTGTTATGAGTGGAGCAATTATATTCATTCAGGAGGATTTGAAGATAACAGAGGTCCAACAAGAAGTACTTGTTGGAATTTTGAGCATAATATCACTTTTGGGTAGTTTAGCTGGTGGGAAAACATCTGATTGGATCGGCAGAAAATGGACCATTGGTTTGGCAGCACTTATCTTCCAAACAGGTGGAGCTATTATGGCTCTTGCTCCATCCTTTAAAGTATTGATGATAGGTAGACTCATAGCAGGTGTAGGTATAGGTTTTGGGGTCATGATTGCACCTGTGTATATCGCCGAAATTTCTCCTGCCATTGCTAGGGGATCTCTCACCTCATTCCCCGAGATCTTCATAAATTTTGGAATTCTTCTTGGCTACATATCAAACTATGCGTTTTCTAAGCTTCCATCGCATATAAATTGGAGAATAATGCTTGGTGTTGGACTTATTCCTTCGGTTGTTATTGCCGTCGCGCTTTTTATCATACCTGAATCTCCAAGATGGCTTGTCGTGCAGAATAGGATTGAAGAAGCTAAACTAGTGCTGTCAAAGATAAGCGAAAGTGAGAAAGATGCCGAAGAAAAATTGCAAGAAATTCAGAAAGCTGCCGGATCAGGAAATGCGGATAAGTACGAAACAAAAGCTGTCTGGAAAGAAATTTTGTATCCTTCTCCTCCCGTTCGAAGAATGCTTATAACTGGTTGTGGAATTCAATGTTTCCAACAGATTACAGGCATAGATACAACAGTATATTATAGCCCGACGATTTTCAAGAACGCTGGAATCACAGGAAACTCTAAGCTTCTTGCAGCAACTGTTGCTGTTGGATTCACCAAAACAGTGTTCATCTTGATAGCTATACTTCTAATCGACAAATTGGGGAGAAAGCCTTTGCTTTACGTGAGCACAATTGGAATGACAATAAGTTTATTTAGCCTGAGCTTCGCACTGGCCTTTCTGAGTCACGCAAAAGTTGGGATCGCGTTGGCGATTCTTGCTGTTTGTGGAAATGTAGCTTCTTTTTCAATAGGACTTGGTCCTATATGTTGGGTGCTGTCATCCGAAATATTTCCTTTGAGGCTTAGAGCGCAAGCATCGGCTCTTGGAGCAGTGGGAAGTAGGGTAAGCAGCGGTGCAATTTCCATGTCCTTTCTATCCGTCACCAAAGCAATAACAGTAGCCGGAACTTTCTTTGTTTTTGGTGTTATTTCGTGCAGCGCTGTTGCGTTTGTTCATTACTGTGTTCCTGAGACAAAAGGAAAGAGTTTGGAAGAAATTGAAGTGCTGTTTCAAAATGTAGGTGAATCACAAGAAAGTGAGGTAGAAATGGGAGATGTGGAGCATCTGATGCAGAAGTCATGA

Protein sequence

>Msa1386040

MGLVDVQENGNGNGDVISEIPLGTKNKYIRMTSEEEEEEEGLATRKHDSKKYIFACAVFASLNSVLLGYDVGVMSGAIIFIQEDLKITEVQQEVLVGILSIISLLGSLAGGKTSDWIGRKWTIGLAALIFQTGGAIMALAPSFKVLMIGRLIAGVGIGFGVMIAPVYIAEISPAIARGSLTSFPEIFINFGILLGYISNYAFSKLPSHINWRIMLGVGLIPSVVIAVALFIIPESPRWLVVQNRIEEAKLVLSKISESEKDAEEKLQEIQKAAGSGNADKYETKAVWKEILYPSPPVRRMLITGCGIQCFQQITGIDTTVYYSPTIFKNAGITGNSKLLAATVAVGFTKTVFILIAILLIDKLGRKPLLYVSTIGMTISLFSLSFALAFLSHAKVGIALAILAVCGNVASFSIGLGPICWVLSSEIFPLRLRAQASALGAVGSRVSSGAISMSFLSVTKAITVAGTFFVFGVISCSAVAFVHYCVPETKGKSLEEIEVLFQNVGESQESEVEMGDVEHLMQKS*