AlfalfaGEDB | Msa0834880

M. sativa cultivar zhongmu-4 / Msa0834880

KEGG: -
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00010.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0834880	XP_003611496.1	83.758	314	44	1	1	314	1	307	5.11e-177	501

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0834880	sp\|Q9T072\|BH025_ARATH	47.938	194	89	4	125	309	134	324	2.36e-48	167

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0834880	G7K128	83.758	314	44	1	1	314	1	307	2.44e-177	501

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TFs/TRs:

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Gene ID	Type	Classification
Msa0834880	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000550	Msa0834880	-0.806983	6.312019e-50	-8.615850e-47
Msa0006110	Msa0834880	0.812507	4.094180e-51	-8.615850e-47
Msa0011500	Msa0834880	0.804516	2.081094e-49	-8.615850e-47
Msa0014710	Msa0834880	0.810113	1.354579e-50	-8.615850e-47
Msa0017510	Msa0834880	0.820381	7.069299e-53	-8.615850e-47
Msa0022310	Msa0834880	0.807372	5.219455e-50	-8.615850e-47
Msa0022550	Msa0834880	0.814919	1.205773e-51	-8.615850e-47
Msa0036920	Msa0834880	0.816081	6.645966e-52	-8.615850e-47
Msa0045790	Msa0834880	0.814629	1.398019e-51	-8.615850e-47
Msa0046160	Msa0834880	0.814097	1.832111e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0834880	MtrunA17_Chr5g0400621	68.563	334	84	3	1	314	1	333	1.45e-131	377
Msa0834880	MtrunA17_Chr5g0400641	81.410	156	29	0	141	296	1	156	3.00e-82	246
Msa0834880	MtrunA17_Chr2g0307131	41.598	363	155	13	1	314	1	355	5.98e-60	195
Msa0834880	MtrunA17_Chr6g0468491	42.405	316	140	11	36	314	3	313	2.58e-56	184
Msa0834880	MtrunA17_Chr2g0307141	52.198	182	87	0	133	314	178	359	1.22e-51	174
Msa0834880	MtrunA17_Chr4g0033281	40.469	341	160	14	1	314	1	325	3.68e-51	172
Msa0834880	MtrunA17_Chr4g0033391	39.634	328	170	12	1	311	1	317	7.60e-50	168
Msa0834880	MtrunA17_Chr2g0280161	42.857	224	121	4	86	308	131	348	1.96e-48	165
Msa0834880	MtrunA17_Chr4g0054621	37.921	356	153	13	4	314	9	341	2.05e-47	162
Msa0834880	MtrunA17_Chr4g0054581	48.611	216	96	5	106	314	171	378	1.47e-46	161

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0834880	AT4G37850.2	47.938	194	89	4	125	309	134	324	2.40e-49	167
Msa0834880	AT4G37850.1	47.938	194	89	4	125	309	134	324	2.40e-49	167
Msa0834880	AT2G22760.1	39.487	195	110	5	121	310	104	295	4.47e-35	129
Msa0834880	AT2G22750.2	44.211	190	95	3	126	305	109	297	1.82e-34	127
Msa0834880	AT2G22750.3	44.211	190	95	3	126	305	137	325	2.96e-34	128
Msa0834880	AT2G22750.5	44.211	190	95	3	126	305	133	321	3.23e-34	127
Msa0834880	AT2G22760.2	41.618	173	94	4	121	289	104	273	2.25e-32	122
Msa0834880	AT2G22750.1	43.684	190	95	4	126	305	109	296	3.79e-32	121
Msa0834880	AT2G22750.4	43.684	190	95	4	126	305	137	324	6.32e-32	121
Msa0834880	AT2G22770.1	35.638	188	106	2	137	309	131	318	9.89e-31	118

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Find 56 sgRNAs with CRISPR-Local

Find 400 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATAAAATATATTAAAGAA+AGG	0.536678	5_4:-8165675	None:intergenic
AACAAATACATCCCAAATCA+AGG	0.480151	5_4:-8165608	None:intergenic
AACTACCTCAAAATCAAGAA+GGG	0.608663	5_4:+8158607	Msa0834880:CDS
AAGTTATTCTTCTTGTCCTT+TGG	0.370526	5_4:+8158506	Msa0834880:CDS
AATAGCAGCGTCCTAGCTAT+TGG	0.355262	5_4:+8159799	Msa0834880:CDS
AATTAGCTGGTTATCTGATT+GGG	0.417900	5_4:+8158211	Msa0834880:CDS
ACGGACAAGACTTCAGTCAT+AGG	0.509641	5_4:+8159487	Msa0834880:CDS
ACTCTAGCTGCTCTTATTCC+TGG	0.272370	5_4:+8158765	Msa0834880:CDS
AGTATTATTATTTCATCGAC+CGG	0.498715	5_4:-8165335	None:intergenic
ATAATAATACTAAGATGTCA+TGG	0.553313	5_4:+8165347	Msa0834880:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGCTTAACAATTTCAGAGAT+TGG	-	chr5_4:8158118-8158137	None:intergenic	30.0%
AATTAGCTGGTTATCTGATT+GGG	+	chr5_4:8158211-8158230	Msa0834880:CDS	30.0%
AAGTTATTCTTCTTGTCCTT+TGG	+	chr5_4:8158506-8158525	Msa0834880:CDS	30.0%
AACTACCTCAAAATCAAGAA+GGG	+	chr5_4:8158607-8158626	Msa0834880:CDS	30.0%
TACACATACCGAATAAAGTT+TGG	-	chr5_4:8159113-8159132	None:intergenic	30.0%
TGTAGTGATGAGAATTCATT+TGG	-	chr5_4:8159319-8159338	None:intergenic	30.0%
TTGACATAACAATCATTGCT+CGG	+	chr5_4:8159833-8159852	Msa0834880:CDS	30.0%
TGTTCGTTGTAGTAAATTGT+TGG	+	chr5_4:8159933-8159952	Msa0834880:intron	30.0%
GAGGAAATTAGGGAAAAAAA+TGG	+	chr5_4:8159963-8159982	Msa0834880:intron	30.0%
TTTGACATATTACCCATCAT+AGG	+	chr5_4:8160049-8160068	Msa0834880:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	8158076	8165709	8158076	ID=Msa0834880;Name=Msa0834880
chr5_4	mRNA	8158076	8165709	8158076	ID=Msa0834880-mRNA-1;Parent=Msa0834880;Name=Msa0834880-mRNA-1;_AED=0.08;_eAED=0.08;_QI=100\|1\|1\|1\|0.75\|0.6\|5\|338\|314
chr5_4	exon	8158076	8158232	8158076	ID=Msa0834880-mRNA-1:exon:3619;Parent=Msa0834880-mRNA-1
chr5_4	exon	8158357	8158797	8158357	ID=Msa0834880-mRNA-1:exon:3620;Parent=Msa0834880-mRNA-1
chr5_4	exon	8159487	8159855	8159487	ID=Msa0834880-mRNA-1:exon:3621;Parent=Msa0834880-mRNA-1
chr5_4	exon	8165243	8165532	8165243	ID=Msa0834880-mRNA-1:exon:3622;Parent=Msa0834880-mRNA-1
chr5_4	exon	8165584	8165709	8165584	ID=Msa0834880-mRNA-1:exon:3623;Parent=Msa0834880-mRNA-1
chr5_4	five_prime_UTR	8158076	8158175	8158076	ID=Msa0834880-mRNA-1:five_prime_utr;Parent=Msa0834880-mRNA-1
chr5_4	CDS	8158176	8158232	8158176	ID=Msa0834880-mRNA-1:cds;Parent=Msa0834880-mRNA-1
chr5_4	CDS	8158357	8158797	8158357	ID=Msa0834880-mRNA-1:cds;Parent=Msa0834880-mRNA-1
chr5_4	CDS	8159487	8159855	8159487	ID=Msa0834880-mRNA-1:cds;Parent=Msa0834880-mRNA-1
chr5_4	CDS	8165243	8165320	8165243	ID=Msa0834880-mRNA-1:cds;Parent=Msa0834880-mRNA-1
chr5_4	three_prime_UTR	8165321	8165532	8165321	ID=Msa0834880-mRNA-1:three_prime_utr;Parent=Msa0834880-mRNA-1
chr5_4	three_prime_UTR	8165584	8165709	8165584	ID=Msa0834880-mRNA-1:three_prime_utr;Parent=Msa0834880-mRNA-1

Gene Sequence

>Msa0834880

ATGGAAAAATTAAACACTTCTTCAAACGCATCATCAATTAGCTGGTTATCTGATTGGCTATTTGAAGAAAATGAAATAGAGGGTTGTAATTTGTTTCAACAATGCGAACAAAACTTGTATGGTGAAGAAGAGTTTCTTTCACATGACATAGCAAGTATTTTTCAACAAGAGGAAAATTTGCAACATCAACCATTGTTACCTTTTGAAAGTTATTCTTCTTGTCCTTTGGAAACAAATTTGGAAAGAGACAACAAGAAGTTGAAAACGAACACCACTTTGCATGAAGTTGTTCCATTGTCACAAACACAACTACCTCAAAATCAAGAAGGGTCATTGCAAAAGCAAAACGTTGTTGAAACTAAAAATACAGAAAGACAAGGGACTAAGAGGTCTGTTGCTTATGATCATCAAGACCGTATCATGGCGGAGAGAAAGAGAAGAGAAAAACTCAGTCAGTGCTTGATTACTCTAGCTGCTCTTATTCCTGGCTTGAAGAAGACGGACAAGACTTCAGTCATAGGAGATGCTATCAAGCATGTGAAAGAGCTCCAAGAACGTTTGAGAGTATTAGAAGAACAGAACAAGAATAGTCTTATTGAATCTGTAGTGACGCTTAACAAATCGCAGCTAAGTTACAAGTCATGGAGTGATTATGGTTCTAAGGCTGCTAGTTCTATTAATGAAGATCTCCTCCACGTGGATGCCAAAATTTTGGACAAAAACGTGCTCATAAGGATCCAGTGCCAAAAGCAAAAGAGTTTTTTGCTTAATAAATTGGTTGAGATTCAAAAGCTCCATCTCTCTGTTGTTAATAGCAGCGTCCTAGCTATTGGGGATTCTATCCTTGACATAACAATCATTGCTCGGAAAGAAACAGGATACAACTTGACCGAAAATGATCTTGTAAAAAGCGTACGCGCTGCTGTATTGAGATCCATGTCGTAA

Protein sequence

>Msa0834880

MEKLNTSSNASSISWLSDWLFEENEIEGCNLFQQCEQNLYGEEEFLSHDIASIFQQEENLQHQPLLPFESYSSCPLETNLERDNKKLKTNTTLHEVVPLSQTQLPQNQEGSLQKQNVVETKNTERQGTKRSVAYDHQDRIMAERKRREKLSQCLITLAALIPGLKKTDKTSVIGDAIKHVKELQERLRVLEEQNKNSLIESVVTLNKSQLSYKSWSDYGSKAASSINEDLLHVDAKILDKNVLIRIQCQKQKSFLLNKLVEIQKLHLSVVNSSVLAIGDSILDITIIARKETGYNLTENDLVKSVRAAVLRSMS*