AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1199830

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1199830 MtrunA17_Chr8g0369311 99.324 148 1 0 1 148 57 204 7.68e-109 308
Msa1199830 MtrunA17_Chr3g0108261 93.243 148 10 0 1 148 1 148 1.25e-103 292
Msa1199830 MtrunA17_Chr5g0432831 93.243 148 10 0 1 148 1 148 1.25e-103 292
Msa1199830 MtrunA17_Chr7g0275361 92.568 148 11 0 1 148 1 148 1.63e-102 290
Msa1199830 MtrunA17_Chr1g0154011 91.216 148 13 0 1 148 1 148 7.56e-102 288
Msa1199830 MtrunA17_Chr4g0037011 87.838 148 18 0 1 148 1 148 1.08e-98 280
Msa1199830 MtrunA17_Chr8g0378601 51.034 145 71 0 2 146 23 167 2.05e-55 171
Msa1199830 MtrunA17_Chr2g0316201 50.345 145 72 0 4 148 8 152 1.24e-48 153
Msa1199830 MtrunA17_Chr2g0316211 50.000 144 72 0 5 148 9 152 1.50e-47 150
Msa1199830 MtrunA17_Chr8g0362321 46.575 146 73 1 2 142 5 150 4.70e-45 144
Msa1199830 MtrunA17_Chr4g0060351 46.575 146 73 1 2 142 5 150 6.31e-45 144
Msa1199830 MtrunA17_Chr3g0131871 48.611 144 72 2 5 146 6 149 1.36e-42 139
Msa1199830 MtrunA17_Chr3g0139901 42.857 147 80 3 5 147 7 153 1.43e-35 120
Msa1199830 MtrunA17_Chr4g0038891 43.750 128 72 0 4 131 35 162 9.64e-35 119
Msa1199830 MtrunA17_Chr5g0396451 42.424 132 75 1 4 135 35 165 2.69e-33 115
Msa1199830 MtrunA17_Chr1g0199951 42.537 134 75 2 3 135 43 175 1.54e-31 111
Msa1199830 MtrunA17_Chr4g0053191 36.842 152 89 3 1 145 4 155 2.81e-29 104
Msa1199830 MtrunA17_Chr8g0348701 34.459 148 94 3 1 146 1 147 1.30e-26 98.6
Msa1199830 MtrunA17_Chr5g0401831 32.895 152 95 2 1 145 4 155 2.25e-26 97.4
Msa1199830 MtrunA17_Chr5g0403591 35.766 137 83 3 5 139 33 166 3.23e-26 97.4
Msa1199830 MtrunA17_Chr4g0031181 33.333 135 76 2 15 135 18 152 1.02e-25 95.9
Msa1199830 MtrunA17_Chr7g0254701 34.266 143 94 0 4 146 13 155 4.10e-25 96.7
Msa1199830 MtrunA17_Chr8g0387131 35.772 123 77 2 26 146 25 147 5.52e-25 94.4
Msa1199830 MtrunA17_Chr4g0059291 29.730 148 101 3 1 146 1 147 5.73e-23 89.4
Msa1199830 MtrunA17_Chr2g0328001 31.944 144 84 2 15 144 18 161 6.53e-23 88.6
Msa1199830 MtrunA17_Chr8g0372391 40.777 103 59 2 1 102 15 116 9.82e-21 82.8
Msa1199830 MtrunA17_Chr5g0404931 36.893 103 63 2 1 102 15 116 3.18e-18 76.3
Msa1199830 MtrunA17_Chr4g0068301 33.333 117 72 3 2 114 11 125 1.73e-17 77.0
Msa1199830 MtrunA17_Chr8g0345331 34.188 117 68 3 4 115 8 120 2.44e-17 75.9
Msa1199830 MtrunA17_Chr8g0376111 34.426 122 70 3 4 115 43 164 4.86e-16 73.2
Msa1199830 MtrunA17_Chr7g0233631 35.246 122 69 3 4 115 38 159 2.72e-15 71.2
Msa1199830 MtrunA17_Chr7g0233611 35.246 122 69 3 4 115 38 159 3.67e-15 70.9
Msa1199830 MtrunA17_Chr7g0222941 30.081 123 76 3 3 115 90 212 1.52e-14 68.2
Msa1199830 MtrunA17_Chr2g0282211 28.477 151 95 4 3 143 681 828 1.08e-13 67.4
Msa1199830 MtrunA17_Chr4g0047301 29.333 150 93 4 4 143 672 818 1.71e-13 66.6
Msa1199830 MtrunA17_Chr1g0186291 29.592 98 55 2 43 139 30 114 9.46e-13 61.6
Msa1199830 MtrunA17_Chr4g0045101 31.148 122 74 3 4 115 37 158 1.23e-12 63.5
Msa1199830 MtrunA17_Chr2g0317631 29.268 123 77 3 3 115 306 428 2.75e-12 63.2
Msa1199830 MtrunA17_Chr1g0211131 29.508 122 76 3 4 115 823 944 4.46e-12 62.8
Msa1199830 MtrunA17_Chr1g0198021 27.642 123 79 3 3 115 137 259 7.33e-12 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1199830 AT1G64230.2 91.892 148 12 0 1 148 1 148 7.83e-103 291
Msa1199830 AT1G64230.1 91.892 148 12 0 1 148 1 148 7.83e-103 291
Msa1199830 AT5G41700.5 91.892 148 12 0 1 148 1 148 1.21e-102 290
Msa1199830 AT5G41700.2 91.892 148 12 0 1 148 1 148 1.21e-102 290
Msa1199830 AT5G41700.1 91.892 148 12 0 1 148 1 148 1.21e-102 290
Msa1199830 AT5G53300.2 92.568 148 11 0 1 148 1 148 1.80e-102 290
Msa1199830 AT5G53300.4 92.568 148 11 0 1 148 1 148 1.80e-102 290
Msa1199830 AT5G53300.1 92.568 148 11 0 1 148 1 148 1.80e-102 290
Msa1199830 AT4G27960.1 91.892 148 12 0 1 148 1 148 3.56e-102 289
Msa1199830 AT4G27960.2 91.892 148 12 0 1 148 31 178 2.25e-101 288
Msa1199830 AT3G08690.2 90.541 148 14 0 1 148 1 148 4.11e-101 286
Msa1199830 AT3G08690.1 90.541 148 14 0 1 148 1 148 4.11e-101 286
Msa1199830 AT5G56150.1 88.514 148 17 0 1 148 1 148 1.83e-100 285
Msa1199830 AT5G41700.4 90.604 149 13 1 1 148 1 149 8.15e-100 283
Msa1199830 AT1G64230.3 85.987 157 13 1 1 148 1 157 2.05e-98 280
Msa1199830 AT2G16740.1 85.034 147 22 0 1 147 1 147 1.65e-95 272
Msa1199830 AT1G64230.5 71.053 190 13 1 1 148 1 190 6.21e-94 270
Msa1199830 AT1G64230.4 71.053 190 13 1 1 148 1 190 6.21e-94 270
Msa1199830 AT3G08700.2 78.523 149 31 1 1 148 1 149 9.05e-87 250
Msa1199830 AT3G08700.1 78.523 149 31 1 1 148 1 149 9.05e-87 250
Msa1199830 AT5G41700.3 90.385 104 10 0 1 104 1 104 3.50e-68 203
Msa1199830 AT5G53300.3 88.991 109 10 1 1 107 1 109 1.24e-67 200
Msa1199830 AT5G56150.2 88.350 103 12 0 1 103 1 103 7.15e-67 198
Msa1199830 AT3G13550.1 46.897 145 77 0 2 146 37 181 1.38e-52 165
Msa1199830 AT1G78870.2 50.345 145 72 0 4 148 8 152 3.53e-48 152
Msa1199830 AT1G16890.2 49.655 145 73 0 4 148 8 152 5.41e-48 152
Msa1199830 AT1G14400.1 47.260 146 72 1 2 142 5 150 3.22e-45 145
Msa1199830 AT1G14400.2 47.260 146 72 1 2 142 5 150 3.22e-45 145
Msa1199830 AT1G16890.3 47.403 154 72 1 4 148 8 161 3.43e-45 145
Msa1199830 AT5G62540.1 50.376 133 66 0 2 134 5 137 6.10e-45 144
Msa1199830 AT2G02760.1 46.575 146 73 1 2 142 5 150 7.15e-45 144
Msa1199830 AT2G02760.2 46.575 146 73 1 2 142 5 150 7.15e-45 144
Msa1199830 AT2G02760.4 46.575 146 73 1 2 142 5 150 7.15e-45 144
Msa1199830 AT2G02760.3 46.575 146 73 1 2 142 5 150 7.15e-45 144
Msa1199830 AT1G36340.2 46.897 145 76 1 2 146 9 152 1.27e-43 141
Msa1199830 AT1G36340.1 46.897 145 76 1 2 146 9 152 1.27e-43 141
Msa1199830 AT3G13550.2 50.000 114 57 0 2 115 37 150 2.99e-42 138
Msa1199830 AT1G16890.1 52.941 119 56 0 30 148 1 119 5.35e-42 136
Msa1199830 AT1G78870.4 52.941 119 56 0 30 148 1 119 1.21e-41 135
Msa1199830 AT1G78870.1 52.500 120 56 1 30 148 1 120 6.59e-40 130
Msa1199830 AT5G50870.1 45.833 144 76 2 5 146 6 149 1.43e-39 132
Msa1199830 AT5G50870.2 42.581 155 76 3 5 146 6 160 3.57e-36 124
Msa1199830 AT3G24515.1 43.949 157 75 3 3 146 8 164 4.61e-35 125
Msa1199830 AT2G32790.1 50.794 126 58 2 25 148 54 177 6.55e-34 117
Msa1199830 AT5G25760.1 40.136 147 84 3 5 147 7 153 7.05e-33 114
Msa1199830 AT5G25760.2 40.136 147 84 3 5 147 7 153 7.05e-33 114
Msa1199830 AT1G78870.3 48.571 105 54 0 4 108 8 112 3.01e-32 111
Msa1199830 AT3G24515.3 45.902 122 62 1 29 146 68 189 5.69e-32 118
Msa1199830 AT3G20060.1 42.424 132 75 1 4 135 39 169 6.28e-32 112
Msa1199830 AT1G50490.1 43.182 132 74 1 4 135 38 168 1.86e-31 111
Msa1199830 AT3G20060.2 44.737 114 62 1 22 135 12 124 5.54e-30 106
Msa1199830 AT2G46030.5 36.486 148 91 3 1 146 1 147 1.19e-28 104
Msa1199830 AT2G46030.1 36.486 148 91 3 1 146 1 147 1.19e-28 104
Msa1199830 AT2G46030.3 36.486 148 91 3 1 146 73 219 2.92e-28 105
Msa1199830 AT2G46030.4 39.024 123 73 2 26 146 28 150 9.94e-28 102
Msa1199830 AT2G46030.2 39.024 123 73 2 26 146 28 150 9.94e-28 102
Msa1199830 AT3G57870.1 34.211 152 93 2 1 145 5 156 3.34e-27 99.8
Msa1199830 AT5G41340.1 34.459 148 94 3 1 146 1 147 2.01e-26 98.6
Msa1199830 AT1G63800.1 35.135 148 93 3 1 146 1 147 2.23e-26 98.6
Msa1199830 AT1G63800.2 37.398 123 75 2 26 146 10 132 3.26e-26 97.4
Msa1199830 AT5G05080.2 35.664 143 92 0 4 146 13 155 3.60e-26 99.4
Msa1199830 AT5G05080.3 35.664 143 92 0 4 146 13 155 3.60e-26 99.4
Msa1199830 AT5G05080.1 35.664 143 92 0 4 146 13 155 3.60e-26 99.4
Msa1199830 AT5G05080.4 35.664 143 92 0 4 146 13 155 3.60e-26 99.4
Msa1199830 AT3G55380.1 34.815 135 74 2 15 135 19 153 8.97e-26 96.3
Msa1199830 AT4G36800.2 35.036 137 84 3 5 139 34 167 1.30e-25 96.3
Msa1199830 AT4G36800.1 35.036 137 84 3 5 139 34 167 1.30e-25 96.3
Msa1199830 AT5G59300.1 32.639 144 83 2 15 144 18 161 1.61e-23 90.5
Msa1199830 AT3G46460.1 31.944 144 84 2 15 144 18 161 2.64e-23 90.1
Msa1199830 AT2G18600.1 33.577 137 86 3 5 139 35 168 4.48e-23 89.7
Msa1199830 AT2G18600.2 33.577 137 86 3 5 139 35 168 4.48e-23 89.7
Msa1199830 AT5G41340.2 38.462 104 62 2 45 146 9 112 8.07e-23 88.2
Msa1199830 AT3G17000.1 36.752 117 68 3 2 114 12 126 2.10e-20 85.5
Msa1199830 AT1G75440.1 38.889 108 60 3 1 107 15 117 4.36e-19 79.0
Msa1199830 AT3G55380.2 27.811 169 74 3 15 135 19 187 1.17e-18 79.0
Msa1199830 AT1G17280.9 35.043 117 67 3 4 115 8 120 1.44e-18 79.3
Msa1199830 AT1G17280.7 35.043 117 67 3 4 115 8 120 1.44e-18 79.3
Msa1199830 AT1G17280.6 35.043 117 67 3 4 115 8 120 1.44e-18 79.3
Msa1199830 AT1G17280.2 35.043 117 67 3 4 115 8 120 1.44e-18 79.3
Msa1199830 AT1G17280.5 35.043 117 67 3 4 115 8 120 1.44e-18 79.3
Msa1199830 AT1G17280.3 35.043 117 67 3 4 115 8 120 1.44e-18 79.3
Msa1199830 AT1G17280.1 35.043 117 67 3 4 115 8 120 1.44e-18 79.3
Msa1199830 AT1G17280.8 35.043 117 67 3 4 115 8 120 1.44e-18 79.3
Msa1199830 AT1G45050.1 37.864 103 62 2 1 102 15 116 1.49e-18 77.4
Msa1199830 AT5G50430.1 35.043 117 67 3 4 115 8 120 1.76e-18 79.3
Msa1199830 AT5G50430.2 35.043 117 67 3 4 115 8 120 1.76e-18 79.3
Msa1199830 AT5G42990.1 38.835 103 61 2 1 102 15 116 1.79e-18 77.4
Msa1199830 AT4G36410.1 36.111 108 63 3 1 107 15 117 4.20e-18 76.3
Msa1199830 AT1G17280.4 32.520 123 68 3 4 115 8 126 2.70e-17 75.9
Msa1199830 AT3G46460.3 29.730 111 65 1 47 144 9 119 3.78e-16 70.5
Msa1199830 AT3G46460.2 29.730 111 65 1 47 144 9 119 3.78e-16 70.5
Msa1199830 AT3G15355.1 28.289 152 96 4 3 144 334 482 3.91e-12 63.2
Msa1199830 AT1G45050.2 34.831 89 56 2 1 88 15 102 5.32e-12 59.3
Msa1199830 AT5G50430.3 30.769 117 59 4 4 115 8 107 2.46e-11 59.7
Msa1199830 AT1G53025.2 26.000 150 98 4 4 143 274 420 4.32e-11 60.1
Msa1199830 AT1G53025.1 26.000 150 98 4 4 143 274 420 4.69e-11 60.1

Find 85 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGGGCTCCATTGCTCTTTC+AGG 0.120840 8_1:+52116351 None:intergenic
CTACCGTTACTGTTGATATT+AGG 0.137672 8_1:+52116389 None:intergenic
GACTCTCTTATCTGCCATTT+TGG 0.148948 8_1:-52115679 Msa1199830:three_prime_UTR
CTTAACCCATGGCATATTTC+TGG 0.152621 8_1:+52115787 None:intergenic
GTGCCTAGGGTTTGAGGGTT+TGG 0.163015 8_1:+52119008 None:intergenic
TGCCTAGGGTTTGAGGGTTT+GGG 0.175895 8_1:+52119009 None:intergenic
ATTTCATTTAGTTTACATTA+AGG 0.249909 8_1:-52115575 Msa1199830:three_prime_UTR
CCATTGGCAAGCTACAATTA+TGG 0.267578 8_1:-52117569 Msa1199830:CDS
CAGAAATATGCCATGGGTTA+AGG 0.286801 8_1:-52115786 Msa1199830:exon
TTGTACATATGAGCAATTTC+AGG 0.311190 8_1:+52115852 None:intergenic
TACCGTTACTGTTGATATTA+GGG 0.326660 8_1:+52116390 None:intergenic
CATTGGCAAGCTACAATTAT+GGG 0.330983 8_1:-52117568 Msa1199830:CDS
TTTCATTTAGTTTACATTAA+GGG 0.347300 8_1:-52115574 None:intergenic
CCTCCTGCTTCTTGCAGTGC+TGG 0.366048 8_1:-52118810 Msa1199830:intron
GACCTTGTGCCTAGGGTTTG+AGG 0.369932 8_1:+52119002 None:intergenic
TTAACCCATGGCATATTTCT+GGG 0.371740 8_1:+52115788 None:intergenic
AATAATGCACAGTTCCAAAA+TGG 0.372760 8_1:+52115665 None:intergenic
AGAAATATGCCATGGGTTAA+GGG 0.381920 8_1:-52115785 Msa1199830:exon
CCAGGAGATAGCCCATTTGC+GGG 0.390432 8_1:-52117544 Msa1199830:CDS
ACCTTGTGCCTAGGGTTTGA+GGG 0.391312 8_1:+52119003 None:intergenic
TTCCTTATTGATCCGCTTTG+AGG 0.396653 8_1:+52118854 None:intergenic
AGAAACACACCTCCCGCAAA+TGG 0.400575 8_1:+52117532 None:intergenic
ACCTTGGATATTGTGAGGGC+AGG 0.405744 8_1:+52116332 None:intergenic
TCAGGGACCAGAGGATCATC+TGG 0.406568 8_1:+52115870 None:intergenic
GGCCTCAAAGCGGATCAATA+AGG 0.439633 8_1:-52118856 Msa1199830:CDS
GAATTTGGGTTTACCTTGGG+TGG 0.439702 8_1:+52117472 None:intergenic
ATCAGTCAACAGAGAACAAA+TGG 0.443192 8_1:+52115899 None:intergenic
CCCAGGAGATAGCCCATTTG+CGG 0.455352 8_1:-52117545 Msa1199830:CDS
TTGAGGGTTTGGGGCGATCT+CGG 0.457288 8_1:+52119019 None:intergenic
AGATAAAATGTAAAACATCT+TGG 0.459599 8_1:+52115758 None:intergenic
GCGGATCAATAAGGAATTGA+AGG 0.460462 8_1:-52118847 Msa1199830:CDS
CCGCAAATGGGCTATCTCCT+GGG 0.465958 8_1:+52117545 None:intergenic
AGAAGAGAAAGAGAAGAAGA+AGG 0.466022 8_1:+52119054 None:intergenic
TCCCAACCCAGATGATCCTC+TGG 0.480906 8_1:-52115877 Msa1199830:CDS
ACCAGAGGATCATCTGGGTT+GGG 0.483549 8_1:+52115876 None:intergenic
ATTCACTGACCTTGTGCCTA+GGG 0.484485 8_1:+52118995 None:intergenic
GAAGAGAAAGAGAAGAAGAA+GGG 0.492849 8_1:+52119055 None:intergenic
TTTACCTTGGGTGGTTTGAA+AGG 0.493166 8_1:+52117481 None:intergenic
GATTCACTGACCTTGTGCCT+AGG 0.494552 8_1:+52118994 None:intergenic
TGTACATATGAGCAATTTCA+GGG 0.503724 8_1:+52115853 None:intergenic
ATGAGGCCACTGCTCGGTCA+TGG 0.505125 8_1:-52115812 Msa1199830:CDS
GAAACACACCTCCCGCAAAT+GGG 0.512424 8_1:+52117533 None:intergenic
TGTGCAAATTCACTTCCCTC+CGG 0.514742 8_1:-52117509 Msa1199830:CDS
GCCTAGGGTTTGAGGGTTTG+GGG 0.516120 8_1:+52119010 None:intergenic
AGGGTTATGCTATGCGTTTG+AGG 0.517584 8_1:+52119074 None:intergenic
GGTGGTTTGAAAGGATAATC+CGG 0.519248 8_1:+52117490 None:intergenic
GACCAGAGGATCATCTGGGT+TGG 0.531915 8_1:+52115875 None:intergenic
GAGCGTTCAGTATTATATAG+TGG 0.533943 8_1:+52119096 None:intergenic
CCTTGGATATTGTGAGGGCA+GGG 0.540091 8_1:+52116333 None:intergenic
ATACCAGCACTGCAAGAAGC+AGG 0.544134 8_1:+52118807 None:intergenic
CAAGCTACAATTATGGGCCC+AGG 0.551929 8_1:-52117562 Msa1199830:CDS
GATCCGCTTTGAGGCCATCT+CGG 0.560812 8_1:+52118863 None:intergenic
GAGTGACAAAGCTAAGTATG+AGG 0.561393 8_1:-52115829 Msa1199830:CDS
GGAACTGTGCATTATTGGAA+AGG 0.562558 8_1:-52115658 Msa1199830:three_prime_UTR
ATTGCTCTTTCAGGATGTCA+AGG 0.568753 8_1:+52116360 None:intergenic
TGGAACATATCATCAGCGAC+AGG 0.569142 8_1:+52117589 None:intergenic
CTAAGTATGAGGCCACTGCT+CGG 0.591968 8_1:-52115818 Msa1199830:CDS
AGATCACCTTGGATATTGTG+AGG 0.593954 8_1:+52116327 None:intergenic
CCCTGCCCTCACAATATCCA+AGG 0.594906 8_1:-52116333 Msa1199830:intron
ATGGACCCAGAAATATGCCA+TGG 0.598403 8_1:-52115793 Msa1199830:CDS
ACCCTCAAACCCTAGGCACA+AGG 0.600888 8_1:-52119004 Msa1199830:intron
CTTGGCCATCCCTTAACCCA+TGG 0.604057 8_1:+52115776 None:intergenic
GATCACCTTGGATATTGTGA+GGG 0.604360 8_1:+52116328 None:intergenic
CAGGGACCAGAGGATCATCT+GGG 0.604692 8_1:+52115871 None:intergenic
CACCCTAATATCAACAGTAA+CGG 0.606586 8_1:-52116392 Msa1199830:CDS
GGAATTGAAGGACTTGCAGA+AGG 0.606883 8_1:-52118835 Msa1199830:CDS
TTGACATCCTGAAAGAGCAA+TGG 0.608625 8_1:-52116358 Msa1199830:CDS
ATATGCCATGGGTTAAGGGA+TGG 0.608734 8_1:-52115781 Msa1199830:exon
CCATAATTGTAGCTTGCCAA+TGG 0.608901 8_1:+52117569 None:intergenic
TTATCCTTTCAAACCACCCA+AGG 0.609431 8_1:-52117485 Msa1199830:intron
TCGCTGATGATATGTTCCAT+TGG 0.614388 8_1:-52117585 Msa1199830:CDS
TGTGAACAGTGTTACCGAGA+TGG 0.626407 8_1:-52118877 Msa1199830:intron
GCCCCAAACCCTCAAACCCT+AGG 0.627183 8_1:-52119011 Msa1199830:five_prime_UTR
CGTTACTGTTGATATTAGGG+TGG 0.631865 8_1:+52116393 None:intergenic
CTGGGTCCATGACCGAGCAG+TGG 0.634278 8_1:+52115806 None:intergenic
TCAGGTTTCATTCCGCACAA+AGG 0.634356 8_1:-52116420 Msa1199830:intron
GGAACATATCATCAGCGACA+GGG 0.652409 8_1:+52117590 None:intergenic
TAGGGTGGAAAACCTTTGTG+CGG 0.653142 8_1:+52116408 None:intergenic
TGGACCCAGAAATATGCCAT+GGG 0.659562 8_1:-52115792 Msa1199830:CDS
TGAGCAATTTCAGGGACCAG+AGG 0.676101 8_1:+52115861 None:intergenic
CCAGCACTGCAAGAAGCAGG+AGG 0.681403 8_1:+52118810 None:intergenic
GTTTGAAAGGATAATCCGGA+GGG 0.687186 8_1:+52117494 None:intergenic
GGAGATAGCCCATTTGCGGG+AGG 0.688783 8_1:-52117541 Msa1199830:CDS
GGTTTGAAAGGATAATCCGG+AGG 0.710430 8_1:+52117493 None:intergenic
TTACCGAGATGGCCTCAAAG+CGG 0.762010 8_1:-52118866 Msa1199830:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAATTTTAACAAAGTTTT+AGG - chr8_1:52116212-52116231 Msa1199830:intron 10.0%
!! AAATTAAATATCAATTGTAT+TGG - chr8_1:52117495-52117514 Msa1199830:CDS 10.0%
!! TCATATCATAAATATATTGA+TGG + chr8_1:52115756-52115775 None:intergenic 15.0%
!! AAAAAAACAAATAAAACAGA+GGG + chr8_1:52115994-52116013 None:intergenic 15.0%
!! AAAAAAAACAAATAAAACAG+AGG + chr8_1:52115995-52116014 None:intergenic 15.0%
!!! CATTATTTAATTTCATTAAG+TGG + chr8_1:52116142-52116161 None:intergenic 15.0%
!! TGATTATGATAACTTAAAAT+TGG - chr8_1:52116428-52116447 Msa1199830:intron 15.0%
!!! TATTTGAAGCAAAAATAATT+GGG + chr8_1:52117667-52117686 None:intergenic 15.0%
!!! CGAAAACTTAATATTGATTT+TGG - chr8_1:52116346-52116365 Msa1199830:CDS 20.0%
!!! TAAGTTATCATAATCACTTT+TGG + chr8_1:52116424-52116443 None:intergenic 20.0%
!!! AATGACTTATTTTATTGCTT+TGG - chr8_1:52116758-52116777 Msa1199830:intron 20.0%
!! TCAAAAGACAATTATTAAAG+AGG + chr8_1:52116997-52117016 None:intergenic 20.0%
!!! CTTGTTTTTAATTTTTATGC+AGG - chr8_1:52117071-52117090 Msa1199830:intron 20.0%
!!! TTAAATTGTGGTTTTAACAA+CGG + chr8_1:52117555-52117574 None:intergenic 20.0%
!!! GTATTTGAAGCAAAAATAAT+TGG + chr8_1:52117668-52117687 None:intergenic 20.0%
!! TAAAATGTAAGATCATAAGA+AGG + chr8_1:52117867-52117886 None:intergenic 20.0%
!! CCATTAACTACAATTAATAT+GGG + chr8_1:52118493-52118512 None:intergenic 20.0%
!! TCCATTAACTACAATTAATA+TGG + chr8_1:52118494-52118513 None:intergenic 20.0%
!!! AATAAATAAGAGTGTATTAG+TGG - chr8_1:52118536-52118555 Msa1199830:intron 20.0%
!!! AATAAATAAGAGTGTATTAG+TGG - chr8_1:52118536-52118555 Msa1199830:intron 20.0%
!!! TCTAAAATGACAAATTATAC+TGG - chr8_1:52118670-52118689 Msa1199830:intron 20.0%
!! AGATAAAATGTAAAACATCT+TGG + chr8_1:52118929-52118948 None:intergenic 20.0%
! ATATATGTGTTTGATAGATC+AGG + chr8_1:52115912-52115931 None:intergenic 25.0%
! TATCAAACACATATATTCCT+CGG - chr8_1:52115916-52115935 Msa1199830:intron 25.0%
!!! TATTGATTTTGGAATGTTTG+AGG - chr8_1:52116357-52116376 Msa1199830:CDS 25.0%
!! TGAATGTTTAGATTCTCTTT+TGG - chr8_1:52116393-52116412 Msa1199830:CDS 25.0%
!! GAATGTTTAGATTCTCTTTT+GGG - chr8_1:52116394-52116413 Msa1199830:CDS 25.0%
!!! GTTTTGACTTTTGATATGTT+TGG - chr8_1:52116450-52116469 Msa1199830:intron 25.0%
! CCAGTTAAAACAAATTTCAT+AGG + chr8_1:52116487-52116506 None:intergenic 25.0%
!!! CCTATGAAATTTGTTTTAAC+TGG - chr8_1:52116484-52116503 Msa1199830:intron 25.0%
! AAACTTGAATCATTTCATGT+GGG + chr8_1:52116804-52116823 None:intergenic 25.0%
! TAAACTTGAATCATTTCATG+TGG + chr8_1:52116805-52116824 None:intergenic 25.0%
! ATTTGCATAAAGCAGAATTT+GGG + chr8_1:52117229-52117248 None:intergenic 25.0%
! AGCAAAAATAATTGGGATTT+GGG + chr8_1:52117660-52117679 None:intergenic 25.0%
! AAGCAAAAATAATTGGGATT+TGG + chr8_1:52117661-52117680 None:intergenic 25.0%
!!! TATTTTTGCTTCAAATACAC+TGG - chr8_1:52117670-52117689 Msa1199830:intron 25.0%
!! ATTTTTGCTTCAAATACACT+GGG - chr8_1:52117671-52117690 Msa1199830:intron 25.0%
! TCCTCAGTAATTATATTTGT+AGG - chr8_1:52117908-52117927 Msa1199830:intron 25.0%
! TCCTACAAATATAATTACTG+AGG + chr8_1:52117912-52117931 None:intergenic 25.0%
! TTCCAATATTACCAACAAAA+GGG + chr8_1:52118018-52118037 None:intergenic 25.0%
! CATTCATTATCAATATGTTC+AGG - chr8_1:52118246-52118265 Msa1199830:intron 25.0%
! ATAGAATATTAAGATCACCT+TGG + chr8_1:52118371-52118390 None:intergenic 25.0%
! CCCATATTAATTGTAGTTAA+TGG - chr8_1:52118490-52118509 Msa1199830:intron 25.0%
!!! AAGTGAATGGAATAGTTTTT+TGG - chr8_1:52118703-52118722 Msa1199830:intron 25.0%
!! TTTGTTTGAATTTTCTTGTC+AGG - chr8_1:52118726-52118745 Msa1199830:intron 25.0%
!! TTGTTTGAATTTTCTTGTCA+GGG - chr8_1:52118727-52118746 Msa1199830:intron 25.0%
!! CTGAAATATTAGAATTTTGC+AGG - chr8_1:52118753-52118772 Msa1199830:intron 25.0%
ACAGAGGGAATAATAAATCA+AGG + chr8_1:52115979-52115998 None:intergenic 30.0%
ACACATCCATATACATATAG+GGG + chr8_1:52116277-52116296 None:intergenic 30.0%
CACACATCCATATACATATA+GGG + chr8_1:52116278-52116297 None:intergenic 30.0%
ACACACATCCATATACATAT+AGG + chr8_1:52116279-52116298 None:intergenic 30.0%
TTGTATGCATATTCACCTTT+GGG - chr8_1:52116306-52116325 Msa1199830:intron 30.0%
!!! GTCAATTTTTTTTCTCCCAA+AGG + chr8_1:52116324-52116343 None:intergenic 30.0%
!!! AATTTGTTTTAACTGGAAGC+TGG - chr8_1:52116491-52116510 Msa1199830:intron 30.0%
AAGCATTAAAATAAGTCGAC+AGG + chr8_1:52116675-52116694 None:intergenic 30.0%
!!! GTCGACTTATTTTAATGCTT+TGG - chr8_1:52116675-52116694 Msa1199830:intron 30.0%
ATTCTGATACTACAAACATG+TGG + chr8_1:52116722-52116741 None:intergenic 30.0%
TAAGATGAGATAAAGTGAAC+TGG - chr8_1:52116831-52116850 Msa1199830:intron 30.0%
AAGATGAGATAAAGTGAACT+GGG - chr8_1:52116832-52116851 Msa1199830:intron 30.0%
CATTTGCATAAAGCAGAATT+TGG + chr8_1:52117230-52117249 None:intergenic 30.0%
AATGTATAACAGACACATGT+TGG - chr8_1:52117246-52117265 Msa1199830:intron 30.0%
ATGTATAACAGACACATGTT+GGG - chr8_1:52117247-52117266 Msa1199830:intron 30.0%
TGATTTCCATTGTTATATGC+TGG + chr8_1:52117382-52117401 None:intergenic 30.0%
!!! AACTCCAAATCTTTTTTGCA+AGG - chr8_1:52117428-52117447 Msa1199830:intron 30.0%
CGATCATGCAATTTAAATTG+TGG + chr8_1:52117567-52117586 None:intergenic 30.0%
GTCATCTTCTTTATGACATA+TGG - chr8_1:52117622-52117641 Msa1199830:intron 30.0%
GCAAAAATAATTGGGATTTG+GGG + chr8_1:52117659-52117678 None:intergenic 30.0%
! GTGTTTGAAGCAAAAGTAAT+TGG + chr8_1:52117710-52117729 None:intergenic 30.0%
TCAGAATCAAACATAACACA+TGG + chr8_1:52117829-52117848 None:intergenic 30.0%
TAATTACTGAGGATCAGAAT+GGG + chr8_1:52117901-52117920 None:intergenic 30.0%
ATAATTACTGAGGATCAGAA+TGG + chr8_1:52117902-52117921 None:intergenic 30.0%
TCCAATATTACCAACAAAAG+GGG + chr8_1:52118017-52118036 None:intergenic 30.0%
CTTCCAATATTACCAACAAA+AGG + chr8_1:52118019-52118038 None:intergenic 30.0%
ACACAAAGTGGAATTATGAA+GGG + chr8_1:52118212-52118231 None:intergenic 30.0%
TACCGTTACTGTTGATATTA+GGG + chr8_1:52118297-52118316 None:intergenic 30.0%
AAATGAGCTTCATTTACGAA+AGG - chr8_1:52118466-52118485 Msa1199830:intron 30.0%
TGTACATATGAGCAATTTCA+GGG + chr8_1:52118834-52118853 None:intergenic 30.0%
TTGTACATATGAGCAATTTC+AGG + chr8_1:52118835-52118854 None:intergenic 30.0%
AATAATGCACAGTTCCAAAA+TGG + chr8_1:52119022-52119041 None:intergenic 30.0%
!!! ATTTTGGAACTGTGCATTAT+TGG - chr8_1:52119021-52119040 Msa1199830:five_prime_UTR 30.0%
GAGCGTTCAGTATTATATAG+TGG + chr8_1:52115591-52115610 None:intergenic 35.0%
GAAGAGAAAGAGAAGAAGAA+GGG + chr8_1:52115632-52115651 None:intergenic 35.0%
AGAAGAGAAAGAGAAGAAGA+AGG + chr8_1:52115633-52115652 None:intergenic 35.0%
TATAAAGCATGTGACAGACA+CGG + chr8_1:52115955-52115974 None:intergenic 35.0%
CTTGTATGCATATTCACCTT+TGG - chr8_1:52116305-52116324 Msa1199830:intron 35.0%
!! TTTTAACTGGAAGCTGGATT+AGG - chr8_1:52116497-52116516 Msa1199830:intron 35.0%
ATTCACCACAACATTGATAG+CGG + chr8_1:52116590-52116609 None:intergenic 35.0%
TGTTGTGGTGAATCTTTAGT+TGG - chr8_1:52116597-52116616 Msa1199830:intron 35.0%
AGATGAGATAAAGTGAACTG+GGG - chr8_1:52116833-52116852 Msa1199830:intron 35.0%
!! TACTTCTAGTTCTAGCAGAA+GGG + chr8_1:52116870-52116889 None:intergenic 35.0%
!! TTACTTCTAGTTCTAGCAGA+AGG + chr8_1:52116871-52116890 None:intergenic 35.0%
CATTGGCAAGCTACAATTAT+GGG - chr8_1:52117116-52117135 Msa1199830:intron 35.0%
CTTTAGCCAGCATATAACAA+TGG - chr8_1:52117373-52117392 Msa1199830:intron 35.0%
CTGTCCTTGCAAAAAAGATT+TGG + chr8_1:52117435-52117454 None:intergenic 35.0%
GAATCAAACATAACACATGG+TGG + chr8_1:52117826-52117845 None:intergenic 35.0%
ACAAGATCATGCCTAAGATT+GGG + chr8_1:52117970-52117989 None:intergenic 35.0%
AACAAGATCATGCCTAAGAT+TGG + chr8_1:52117971-52117990 None:intergenic 35.0%
!!! TCCCCTTTTGTTGGTAATAT+TGG - chr8_1:52118013-52118032 Msa1199830:intron 35.0%
CAACTGGCTACACATAATTA+GGG + chr8_1:52118111-52118130 None:intergenic 35.0%
ACAACTGGCTACACATAATT+AGG + chr8_1:52118112-52118131 None:intergenic 35.0%
GCATCTCTATAATGAACAAC+TGG + chr8_1:52118127-52118146 None:intergenic 35.0%
CACACAAAGTGGAATTATGA+AGG + chr8_1:52118213-52118232 None:intergenic 35.0%
ATACAAACACTCACACAAAG+TGG + chr8_1:52118224-52118243 None:intergenic 35.0%
CACCCTAATATCAACAGTAA+CGG - chr8_1:52118292-52118311 Msa1199830:intron 35.0%
CTACCGTTACTGTTGATATT+AGG + chr8_1:52118298-52118317 None:intergenic 35.0%
TGGACAAGTGATTAAGTGAA+TGG - chr8_1:52118690-52118709 Msa1199830:intron 35.0%
ATCAGTCAACAGAGAACAAA+TGG + chr8_1:52118788-52118807 None:intergenic 35.0%
TTAACCCATGGCATATTTCT+GGG + chr8_1:52118899-52118918 None:intergenic 35.0%
! AGAAATATGCCATGGGTTAA+GGG - chr8_1:52118899-52118918 Msa1199830:intron 35.0%
TTCCTTATTGATCCGCTTTG+AGG + chr8_1:52115833-52115852 None:intergenic 40.0%
GCGGATCAATAAGGAATTGA+AGG - chr8_1:52115837-52115856 Msa1199830:CDS 40.0%
ATAAAGCATGTGACAGACAC+GGG + chr8_1:52115954-52115973 None:intergenic 40.0%
GACATATGTCACGTGCTTTA+GGG - chr8_1:52116070-52116089 Msa1199830:intron 40.0%
TACGCACCCCTATATGTATA+TGG - chr8_1:52116268-52116287 Msa1199830:intron 40.0%
GATGAGATAAAGTGAACTGG+GGG - chr8_1:52116834-52116853 Msa1199830:intron 40.0%
TCGCTGATGATATGTTCCAT+TGG - chr8_1:52117099-52117118 Msa1199830:intron 40.0%
! CCATAATTGTAGCTTGCCAA+TGG + chr8_1:52117118-52117137 None:intergenic 40.0%
CCATTGGCAAGCTACAATTA+TGG - chr8_1:52117115-52117134 Msa1199830:intron 40.0%
GTTTGAAAGGATAATCCGGA+GGG + chr8_1:52117193-52117212 None:intergenic 40.0%
GGTGGTTTGAAAGGATAATC+CGG + chr8_1:52117197-52117216 None:intergenic 40.0%
TTATCCTTTCAAACCACCCA+AGG - chr8_1:52117199-52117218 Msa1199830:intron 40.0%
TTTACCTTGGGTGGTTTGAA+AGG + chr8_1:52117206-52117225 None:intergenic 40.0%
! GCAGAATTTGGGTTTACCTT+GGG + chr8_1:52117218-52117237 None:intergenic 40.0%
! AGCAGAATTTGGGTTTACCT+TGG + chr8_1:52117219-52117238 None:intergenic 40.0%
ACATGTTGGGCTATATGTCT+AGG - chr8_1:52117260-52117279 Msa1199830:intron 40.0%
TCACCATTCTACACAAGTAG+TGG - chr8_1:52117594-52117613 Msa1199830:CDS 40.0%
AGGATCTTACGATCCTTGTT+AGG - chr8_1:52117928-52117947 Msa1199830:intron 40.0%
GGGATAGCAAAATCCTAACA+AGG + chr8_1:52117944-52117963 None:intergenic 40.0%
! TGTTTTGCTTCCCCTTTTGT+TGG - chr8_1:52118004-52118023 Msa1199830:intron 40.0%
!! TGGTGGATTGAATCAGATTG+GGG + chr8_1:52118088-52118107 None:intergenic 40.0%
!! GTGGTGGATTGAATCAGATT+GGG + chr8_1:52118089-52118108 None:intergenic 40.0%
CGTTACTGTTGATATTAGGG+TGG + chr8_1:52118294-52118313 None:intergenic 40.0%
ATTGCTCTTTCAGGATGTCA+AGG + chr8_1:52118327-52118346 None:intergenic 40.0%
TTGACATCCTGAAAGAGCAA+TGG - chr8_1:52118326-52118345 Msa1199830:intron 40.0%
GATCACCTTGGATATTGTGA+GGG + chr8_1:52118359-52118378 None:intergenic 40.0%
AGATCACCTTGGATATTGTG+AGG + chr8_1:52118360-52118379 None:intergenic 40.0%
GAGTGACAAAGCTAAGTATG+AGG - chr8_1:52118855-52118874 Msa1199830:CDS 40.0%
CTTAACCCATGGCATATTTC+TGG + chr8_1:52118900-52118919 None:intergenic 40.0%
! CAGAAATATGCCATGGGTTA+AGG - chr8_1:52118898-52118917 Msa1199830:intron 40.0%
!! GACTCTCTTATCTGCCATTT+TGG - chr8_1:52119005-52119024 Msa1199830:five_prime_UTR 40.0%
GGAACTGTGCATTATTGGAA+AGG - chr8_1:52119026-52119045 Msa1199830:five_prime_UTR 40.0%
AGGGTTATGCTATGCGTTTG+AGG + chr8_1:52115613-52115632 None:intergenic 45.0%
ATTCACTGACCTTGTGCCTA+GGG + chr8_1:52115692-52115711 None:intergenic 45.0%
TGTGAACAGTGTTACCGAGA+TGG - chr8_1:52115807-52115826 Msa1199830:CDS 45.0%
GGAATTGAAGGACTTGCAGA+AGG - chr8_1:52115849-52115868 Msa1199830:CDS 45.0%
CGACATATGTCACGTGCTTT+AGG - chr8_1:52116069-52116088 Msa1199830:intron 45.0%
!! ATGTCACGTGCTTTAGGGTT+TGG - chr8_1:52116075-52116094 Msa1199830:intron 45.0%
!! TGTCACGTGCTTTAGGGTTT+GGG - chr8_1:52116076-52116095 Msa1199830:intron 45.0%
ATGCTCCGCTATCAATGTTG+TGG - chr8_1:52116582-52116601 Msa1199830:intron 45.0%
GGAACATATCATCAGCGACA+GGG + chr8_1:52117097-52117116 None:intergenic 45.0%
TGGAACATATCATCAGCGAC+AGG + chr8_1:52117098-52117117 None:intergenic 45.0%
TGTGCAAATTCACTTCCCTC+CGG - chr8_1:52117175-52117194 Msa1199830:intron 45.0%
GGTTTGAAAGGATAATCCGG+AGG + chr8_1:52117194-52117213 None:intergenic 45.0%
! GAATTTGGGTTTACCTTGGG+TGG + chr8_1:52117215-52117234 None:intergenic 45.0%
CCACCACTACTTGTGTAGAA+TGG + chr8_1:52117600-52117619 None:intergenic 45.0%
CCATTCTACACAAGTAGTGG+TGG - chr8_1:52117597-52117616 Msa1199830:intron 45.0%
TTCAAATACACTGGGAGCGA+TGG - chr8_1:52117679-52117698 Msa1199830:intron 45.0%
GATCAGAATGGGTAGCAAGA+TGG + chr8_1:52117890-52117909 None:intergenic 45.0%
TCATGCCTAAGATTGGGAGA+GGG + chr8_1:52117964-52117983 None:intergenic 45.0%
ATCATGCCTAAGATTGGGAG+AGG + chr8_1:52117965-52117984 None:intergenic 45.0%
!! GGTGGTGGATTGAATCAGAT+TGG + chr8_1:52118090-52118109 None:intergenic 45.0%
GCTACACATAATTAGGGTGG+TGG + chr8_1:52118105-52118124 None:intergenic 45.0%
CTGGCTACACATAATTAGGG+TGG + chr8_1:52118108-52118127 None:intergenic 45.0%
TCAGGTTTCATTCCGCACAA+AGG - chr8_1:52118264-52118283 Msa1199830:intron 45.0%
TAGGGTGGAAAACCTTTGTG+CGG + chr8_1:52118279-52118298 None:intergenic 45.0%
ATGGACCCAGAAATATGCCA+TGG - chr8_1:52118891-52118910 Msa1199830:intron 45.0%
TGGACCCAGAAATATGCCAT+GGG - chr8_1:52118892-52118911 Msa1199830:intron 45.0%
! ATATGCCATGGGTTAAGGGA+TGG - chr8_1:52118903-52118922 Msa1199830:intron 45.0%
TGCCTAGGGTTTGAGGGTTT+GGG + chr8_1:52115678-52115697 None:intergenic 50.0%
ACCTTGTGCCTAGGGTTTGA+GGG + chr8_1:52115684-52115703 None:intergenic 50.0%
GATTCACTGACCTTGTGCCT+AGG + chr8_1:52115693-52115712 None:intergenic 50.0%
TTACCGAGATGGCCTCAAAG+CGG - chr8_1:52115818-52115837 Msa1199830:CDS 50.0%
GGCCTCAAAGCGGATCAATA+AGG - chr8_1:52115828-52115847 Msa1199830:CDS 50.0%
ATACCAGCACTGCAAGAAGC+AGG + chr8_1:52115880-52115899 None:intergenic 50.0%
!! GTGCTTTAGGGTTTGGGCAT+GGG - chr8_1:52116082-52116101 Msa1199830:intron 50.0%
ATAAAGTGAACTGGGGGCCT+GGG - chr8_1:52116840-52116859 Msa1199830:intron 50.0%
CAAGCTACAATTATGGGCCC+AGG - chr8_1:52117122-52117141 Msa1199830:intron 50.0%
GAAACACACCTCCCGCAAAT+GGG + chr8_1:52117154-52117173 None:intergenic 50.0%
AGAAACACACCTCCCGCAAA+TGG + chr8_1:52117155-52117174 None:intergenic 50.0%
GCTATCCCTCTCCCAATCTT+AGG - chr8_1:52117956-52117975 Msa1199830:intron 50.0%
CCTTGGATATTGTGAGGGCA+GGG + chr8_1:52118354-52118373 None:intergenic 50.0%
ACCTTGGATATTGTGAGGGC+AGG + chr8_1:52118355-52118374 None:intergenic 50.0%
ACCAGAGGATCATCTGGGTT+GGG + chr8_1:52118811-52118830 None:intergenic 50.0%
TGAGCAATTTCAGGGACCAG+AGG + chr8_1:52118826-52118845 None:intergenic 50.0%
CTAAGTATGAGGCCACTGCT+CGG - chr8_1:52118866-52118885 Msa1199830:exon 50.0%
! TTGAGGGTTTGGGGCGATCT+CGG + chr8_1:52115668-52115687 None:intergenic 55.0%
GCCTAGGGTTTGAGGGTTTG+GGG + chr8_1:52115677-52115696 None:intergenic 55.0%
GTGCCTAGGGTTTGAGGGTT+TGG + chr8_1:52115679-52115698 None:intergenic 55.0%
ACCCTCAAACCCTAGGCACA+AGG - chr8_1:52115680-52115699 Msa1199830:three_prime_UTR 55.0%
GACCTTGTGCCTAGGGTTTG+AGG + chr8_1:52115685-52115704 None:intergenic 55.0%
!! GATCCGCTTTGAGGCCATCT+CGG + chr8_1:52115824-52115843 None:intergenic 55.0%
ACGGGAACACGCTTAATCCG+AGG + chr8_1:52115936-52115955 None:intergenic 55.0%
!! CGTGCTTTAGGGTTTGGGCA+TGG - chr8_1:52116081-52116100 Msa1199830:intron 55.0%
! GGTTTGGGCATGGGTTGTAG+AGG - chr8_1:52116091-52116110 Msa1199830:intron 55.0%
GATAAAGTGAACTGGGGGCC+TGG - chr8_1:52116839-52116858 Msa1199830:intron 55.0%
TAAAGTGAACTGGGGGCCTG+GGG - chr8_1:52116841-52116860 Msa1199830:intron 55.0%
TCTAGCAGAAGGGATTCCCC+AGG + chr8_1:52116860-52116879 None:intergenic 55.0%
!! CCGCAAATGGGCTATCTCCT+GGG + chr8_1:52117142-52117161 None:intergenic 55.0%
CCCAGGAGATAGCCCATTTG+CGG - chr8_1:52117139-52117158 Msa1199830:intron 55.0%
CCAGGAGATAGCCCATTTGC+GGG - chr8_1:52117140-52117159 Msa1199830:intron 55.0%
GTTGCGCTACTAGCAAGAGC+TGG + chr8_1:52117782-52117801 None:intergenic 55.0%
CAGGGCTCCATTGCTCTTTC+AGG + chr8_1:52118336-52118355 None:intergenic 55.0%
CCCTGCCCTCACAATATCCA+AGG - chr8_1:52118351-52118370 Msa1199830:intron 55.0%
TCCCAACCCAGATGATCCTC+TGG - chr8_1:52118807-52118826 Msa1199830:intron 55.0%
GACCAGAGGATCATCTGGGT+TGG + chr8_1:52118812-52118831 None:intergenic 55.0%
CAGGGACCAGAGGATCATCT+GGG + chr8_1:52118816-52118835 None:intergenic 55.0%
TCAGGGACCAGAGGATCATC+TGG + chr8_1:52118817-52118836 None:intergenic 55.0%
CTTGGCCATCCCTTAACCCA+TGG + chr8_1:52118911-52118930 None:intergenic 55.0%
GCCCCAAACCCTCAAACCCT+AGG - chr8_1:52115673-52115692 Msa1199830:three_prime_UTR 60.0%
CCAGCACTGCAAGAAGCAGG+AGG + chr8_1:52115877-52115896 None:intergenic 60.0%
CCTCCTGCTTCTTGCAGTGC+TGG - chr8_1:52115874-52115893 Msa1199830:CDS 60.0%
!! CCCGCAAATGGGCTATCTCC+TGG + chr8_1:52117143-52117162 None:intergenic 60.0%
GGAGATAGCCCATTTGCGGG+AGG - chr8_1:52117143-52117162 Msa1199830:intron 60.0%
ATGAGGCCACTGCTCGGTCA+TGG - chr8_1:52118872-52118891 Msa1199830:intron 60.0%
CTGGGTCCATGACCGAGCAG+TGG + chr8_1:52118881-52118900 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 52115575 52119131 52115575 ID=Msa1199830;Name=Msa1199830
chr8_1 mRNA 52115575 52119131 52115575 ID=Msa1199830-mRNA-1;Parent=Msa1199830;Name=Msa1199830-mRNA-1;_AED=0.11;_eAED=0.11;_QI=137|1|1|1|0.75|0.6|5|213|148
chr8_1 exon 52115575 52115931 52115575 ID=Msa1199830-mRNA-1:exon:16640;Parent=Msa1199830-mRNA-1
chr8_1 exon 52116334 52116438 52116334 ID=Msa1199830-mRNA-1:exon:16639;Parent=Msa1199830-mRNA-1
chr8_1 exon 52117486 52117613 52117486 ID=Msa1199830-mRNA-1:exon:16638;Parent=Msa1199830-mRNA-1
chr8_1 exon 52118811 52118890 52118811 ID=Msa1199830-mRNA-1:exon:16637;Parent=Msa1199830-mRNA-1
chr8_1 exon 52119005 52119131 52119005 ID=Msa1199830-mRNA-1:exon:16636;Parent=Msa1199830-mRNA-1
chr8_1 five_prime_UTR 52119005 52119131 52119005 ID=Msa1199830-mRNA-1:five_prime_utr;Parent=Msa1199830-mRNA-1
chr8_1 five_prime_UTR 52118881 52118890 52118881 ID=Msa1199830-mRNA-1:five_prime_utr;Parent=Msa1199830-mRNA-1
chr8_1 CDS 52118811 52118880 52118811 ID=Msa1199830-mRNA-1:cds;Parent=Msa1199830-mRNA-1
chr8_1 CDS 52117486 52117613 52117486 ID=Msa1199830-mRNA-1:cds;Parent=Msa1199830-mRNA-1
chr8_1 CDS 52116334 52116438 52116334 ID=Msa1199830-mRNA-1:cds;Parent=Msa1199830-mRNA-1
chr8_1 CDS 52115788 52115931 52115788 ID=Msa1199830-mRNA-1:cds;Parent=Msa1199830-mRNA-1
chr8_1 three_prime_UTR 52115575 52115787 52115575 ID=Msa1199830-mRNA-1:three_prime_utr;Parent=Msa1199830-mRNA-1
Gene Sequence

>Msa1199830

ATGGCCTCAAAGCGGATCAATAAGGAATTGAAGGACTTGCAGAAGGATCCTCCTGCTTCTTGCAGTGCTGGCCCTGTCGCTGATGATATGTTCCATTGGCAAGCTACAATTATGGGCCCAGGAGATAGCCCATTTGCGGGAGGTGTGTTTCTTGTGCAAATTCACTTCCCTCCGGATTATCCTTTCAAACCACCCAAGGTTTCATTCCGCACAAAGGTTTTCCACCCTAATATCAACAGTAACGGTAGCATTTGCCTTGACATCCTGAAAGAGCAATGGAGCCCTGCCCTCACAATATCCAAGGTGCTACTGTCCATTTGTTCTCTGTTGACTGATCCCAACCCAGATGATCCTCTGGTCCCTGAAATTGCTCATATGTACAAGAGTGACAAAGCTAAGTATGAGGCCACTGCTCGGTCATGGACCCAGAAATATGCCATGGGTTAA
Protein sequence

>Msa1199830

MASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPGDSPFAGGVFLVQIHFPPDYPFKPPKVSFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAMG*