Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0039900 | sp|Q8VYB1|MED31_ARATH | 61.111 | 126 | 32 | 4 | 1 | 123 | 82 | 193 | 5.21e-33 | 117 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0039900 | TR | SOH1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007970 | Msa0039900 | -0.812226 | 4.717170e-51 | -8.615850e-47 |
| Msa0020390 | Msa0039900 | -0.804929 | 1.706371e-49 | -8.615850e-47 |
| Msa0031990 | Msa0039900 | 0.828131 | 1.066246e-54 | -8.615850e-47 |
| Msa0035120 | Msa0039900 | -0.816456 | 5.479432e-52 | -8.615850e-47 |
| Msa0039900 | Msa0061340 | -0.812587 | 3.934173e-51 | -8.615850e-47 |
| Msa0039900 | Msa0065680 | 0.828313 | 9.634706e-55 | -8.615850e-47 |
| Msa0039900 | Msa0090570 | -0.811648 | 6.301882e-51 | -8.615850e-47 |
| Msa0039900 | Msa0106620 | -0.817000 | 4.137976e-52 | -8.615850e-47 |
| Msa0039900 | Msa0106710 | -0.824962 | 6.074166e-54 | -8.615850e-47 |
| Msa0039900 | Msa0115090 | -0.809608 | 1.739919e-50 | -8.615850e-47 |
| Msa0039900 | Msa0127800 | -0.809109 | 2.225439e-50 | -8.615850e-47 |
| Msa0039900 | Msa0140500 | 0.818910 | 1.531504e-52 | -8.615850e-47 |
| Msa0039900 | Msa0144360 | -0.801998 | 6.909813e-49 | -8.615850e-47 |
| Msa0039900 | Msa0150840 | -0.812385 | 4.354092e-51 | -8.615850e-47 |
| Msa0039900 | Msa0152400 | -0.814365 | 1.599062e-51 | -8.615850e-47 |
| Msa0039900 | Msa0154840 | 0.826677 | 2.378726e-54 | -8.615850e-47 |
| Msa0039900 | Msa0167980 | -0.806794 | 6.917891e-50 | -8.615850e-47 |
| Msa0039900 | Msa0183850 | -0.809881 | 1.519546e-50 | -8.615850e-47 |
| Msa0039900 | Msa0188350 | -0.824145 | 9.456353e-54 | -8.615850e-47 |
| Msa0039900 | Msa0192640 | -0.815169 | 1.060898e-51 | -8.615850e-47 |
| Msa0039900 | Msa0204960 | -0.811736 | 6.029667e-51 | -8.615850e-47 |
| Msa0039900 | Msa0206690 | -0.815163 | 1.063939e-51 | -8.615850e-47 |
| Msa0039900 | Msa0207350 | -0.843364 | 1.466463e-58 | -8.615850e-47 |
| Msa0039900 | Msa0214550 | -0.827018 | 1.972599e-54 | -8.615850e-47 |
| Msa0039900 | Msa0220730 | -0.816186 | 6.296233e-52 | -8.615850e-47 |
| Msa0039900 | Msa0223330 | -0.805035 | 1.621338e-49 | -8.615850e-47 |
| Msa0039900 | Msa0233380 | -0.816160 | 6.382023e-52 | -8.615850e-47 |
| Msa0039900 | Msa0249580 | -0.811114 | 8.229182e-51 | -8.615850e-47 |
| Msa0039900 | Msa0257490 | -0.831561 | 1.556375e-55 | -8.615850e-47 |
| Msa0039900 | Msa0259210 | -0.813383 | 2.632470e-51 | -8.615850e-47 |
| Msa0039900 | Msa0259220 | -0.816937 | 4.273765e-52 | -8.615850e-47 |
| Msa0039900 | Msa0277420 | -0.811201 | 7.880782e-51 | -8.615850e-47 |
| Msa0039900 | Msa0277450 | -0.823613 | 1.260511e-53 | -8.615850e-47 |
| Msa0039900 | Msa0279850 | -0.801657 | 8.119870e-49 | -8.615850e-47 |
| Msa0039900 | Msa0281530 | -0.825969 | 3.506580e-54 | -8.615850e-47 |
| Msa0039900 | Msa0284350 | -0.808021 | 3.799833e-50 | -8.615850e-47 |
| Msa0039900 | Msa0296790 | -0.815490 | 9.003539e-52 | -8.615850e-47 |
| Msa0039900 | Msa0296820 | -0.806605 | 7.583557e-50 | -8.615850e-47 |
| Msa0039900 | Msa0300690 | -0.815170 | 1.060490e-51 | -8.615850e-47 |
| Msa0039900 | Msa0304510 | -0.809326 | 2.000005e-50 | -8.615850e-47 |
| Msa0039900 | Msa0312910 | -0.800616 | 1.325645e-48 | -8.615850e-47 |
| Msa0039900 | Msa0317970 | -0.827422 | 1.578631e-54 | -8.615850e-47 |
| Msa0039900 | Msa0320590 | -0.858812 | 6.369043e-63 | -8.615850e-47 |
| Msa0039900 | Msa0321690 | -0.812347 | 4.437587e-51 | -8.615850e-47 |
| Msa0039900 | Msa0322900 | -0.817517 | 3.164725e-52 | -8.615850e-47 |
| Msa0039900 | Msa0335800 | -0.803074 | 4.145932e-49 | -8.615850e-47 |
| Msa0039900 | Msa0336310 | -0.825173 | 5.415516e-54 | -8.615850e-47 |
| Msa0039900 | Msa0336320 | -0.817640 | 2.969551e-52 | -8.615850e-47 |
| Msa0039900 | Msa0343850 | -0.840640 | 7.698698e-58 | -8.615850e-47 |
| Msa0039900 | Msa0358400 | -0.810759 | 9.824721e-51 | -8.615850e-47 |
| Msa0039900 | Msa0365100 | -0.818919 | 1.524503e-52 | -8.615850e-47 |
| Msa0039900 | Msa0367870 | -0.800452 | 1.431543e-48 | -8.615850e-47 |
| Msa0039900 | Msa0381610 | 0.839172 | 1.857064e-57 | -8.615850e-47 |
| Msa0039900 | Msa0382370 | -0.829148 | 6.052039e-55 | -8.615850e-47 |
| Msa0039900 | Msa0419720 | -0.807862 | 4.108603e-50 | -8.615850e-47 |
| Msa0039900 | Msa0421300 | 0.817502 | 3.189637e-52 | -8.615850e-47 |
| Msa0039900 | Msa0427040 | -0.801107 | 1.052624e-48 | -8.615850e-47 |
| Msa0039900 | Msa0427100 | -0.800504 | 1.397152e-48 | -8.615850e-47 |
| Msa0039900 | Msa0427120 | -0.809839 | 1.551539e-50 | -8.615850e-47 |
| Msa0039900 | Msa0432160 | -0.826152 | 3.173018e-54 | -8.615850e-47 |
| Msa0039900 | Msa0450400 | 0.848040 | 7.894197e-60 | -8.615850e-47 |
| Msa0039900 | Msa0452710 | -0.818723 | 1.689437e-52 | -8.615850e-47 |
| Msa0039900 | Msa0460590 | -0.805555 | 1.261800e-49 | -8.615850e-47 |
| Msa0039900 | Msa0464680 | -0.804903 | 1.727918e-49 | -8.615850e-47 |
| Msa0039900 | Msa0466840 | 0.821600 | 3.703361e-53 | -8.615850e-47 |
| Msa0039900 | Msa0467100 | -0.811822 | 5.777464e-51 | -8.615850e-47 |
| Msa0039900 | Msa0468250 | -0.803144 | 4.009843e-49 | -8.615850e-47 |
| Msa0039900 | Msa0469620 | 0.806222 | 9.132729e-50 | -8.615850e-47 |
| Msa0039900 | Msa0473500 | -0.818398 | 2.001534e-52 | -8.615850e-47 |
| Msa0039900 | Msa0476680 | -0.827807 | 1.275702e-54 | -8.615850e-47 |
| Msa0039900 | Msa0485240 | -0.811898 | 5.561615e-51 | -8.615850e-47 |
| Msa0039900 | Msa0491000 | -0.817492 | 3.206352e-52 | -8.615850e-47 |
| Msa0039900 | Msa0511770 | -0.805377 | 1.374677e-49 | -8.615850e-47 |
| Msa0039900 | Msa0517090 | -0.823375 | 1.432827e-53 | -8.615850e-47 |
| Msa0039900 | Msa0518960 | -0.805428 | 1.341403e-49 | -8.615850e-47 |
| Msa0039900 | Msa0521010 | -0.826870 | 2.139579e-54 | -8.615850e-47 |
| Msa0039900 | Msa0531250 | -0.810263 | 1.257482e-50 | -8.615850e-47 |
| Msa0039900 | Msa0542290 | -0.805273 | 1.445421e-49 | -8.615850e-47 |
| Msa0039900 | Msa0560500 | -0.801508 | 8.710079e-49 | -8.615850e-47 |
| Msa0039900 | Msa0588090 | -0.801613 | 8.290684e-49 | -8.615850e-47 |
| Msa0039900 | Msa0588220 | -0.812127 | 4.956667e-51 | -8.615850e-47 |
| Msa0039900 | Msa0597770 | -0.804014 | 2.647554e-49 | -8.615850e-47 |
| Msa0039900 | Msa0601530 | -0.813474 | 2.513542e-51 | -8.615850e-47 |
| Msa0039900 | Msa0614000 | -0.805326 | 1.408705e-49 | -8.615850e-47 |
| Msa0039900 | Msa0628420 | -0.810490 | 1.123505e-50 | -8.615850e-47 |
| Msa0039900 | Msa0638480 | -0.822578 | 2.197331e-53 | -8.615850e-47 |
| Msa0039900 | Msa0693330 | -0.800681 | 1.285852e-48 | -8.615850e-47 |
| Msa0039900 | Msa0721280 | -0.818298 | 2.109158e-52 | -8.615850e-47 |
| Msa0039900 | Msa0748920 | -0.814386 | 1.581664e-51 | -8.615850e-47 |
| Msa0039900 | Msa0755150 | -0.805899 | 1.068300e-49 | -8.615850e-47 |
| Msa0039900 | Msa0755330 | -0.801183 | 1.015399e-48 | -8.615850e-47 |
| Msa0039900 | Msa0794510 | 0.801290 | 9.652770e-49 | -8.615850e-47 |
| Msa0039900 | Msa0822310 | 0.812056 | 5.135985e-51 | -8.615850e-47 |
| Msa0039900 | Msa0832090 | -0.804291 | 2.318397e-49 | -8.615850e-47 |
| Msa0039900 | Msa0837780 | -0.800227 | 1.590990e-48 | -8.615850e-47 |
| Msa0039900 | Msa0844390 | -0.806133 | 9.536353e-50 | -8.615850e-47 |
| Msa0039900 | Msa0844490 | -0.807576 | 4.725343e-50 | -8.615850e-47 |
| Msa0039900 | Msa0861510 | -0.805921 | 1.056674e-49 | -8.615850e-47 |
| Msa0039900 | Msa0897200 | -0.800886 | 1.167745e-48 | -8.615850e-47 |
| Msa0039900 | Msa0903780 | -0.802458 | 5.556554e-49 | -8.615850e-47 |
| Msa0039900 | Msa0960740 | -0.804525 | 2.072072e-49 | -8.615850e-47 |
| Msa0039900 | Msa0962840 | -0.804944 | 1.694067e-49 | -8.615850e-47 |
| Msa0039900 | Msa0967380 | -0.805786 | 1.128451e-49 | -8.615850e-47 |
| Msa0039900 | Msa0970990 | -0.805717 | 1.166474e-49 | -8.615850e-47 |
| Msa0039900 | Msa0971160 | -0.802181 | 6.337411e-49 | -8.615850e-47 |
| Msa0039900 | Msa0974950 | -0.804751 | 1.858217e-49 | -8.615850e-47 |
| Msa0039900 | Msa1002850 | -0.810078 | 1.378577e-50 | -8.615850e-47 |
| Msa0039900 | Msa1006010 | 0.816663 | 4.923136e-52 | -8.615850e-47 |
| Msa0039900 | Msa1009660 | -0.809399 | 1.929096e-50 | -8.615850e-47 |
| Msa0039900 | Msa1012590 | 0.802556 | 5.304049e-49 | -8.615850e-47 |
| Msa0039900 | Msa1036610 | -0.810250 | 1.265301e-50 | -8.615850e-47 |
| Msa0039900 | Msa1037520 | -0.814005 | 1.920430e-51 | -8.615850e-47 |
| Msa0039900 | Msa1043370 | -0.800715 | 1.265762e-48 | -8.615850e-47 |
| Msa0039900 | Msa1050910 | -0.815678 | 8.172308e-52 | -8.615850e-47 |
| Msa0039900 | Msa1050960 | -0.810705 | 1.009330e-50 | -8.615850e-47 |
| Msa0039900 | Msa1054150 | 0.806473 | 8.086791e-50 | -8.615850e-47 |
| Msa0039900 | Msa1076810 | 0.813755 | 2.179510e-51 | -8.615850e-47 |
| Msa0039900 | Msa1079430 | -0.816483 | 5.402437e-52 | -8.615850e-47 |
| Msa0039900 | Msa1089450 | -0.814783 | 1.292178e-51 | -8.615850e-47 |
| Msa0039900 | Msa1097820 | -0.801255 | 9.814130e-49 | -8.615850e-47 |
| Msa0039900 | Msa1121490 | -0.802413 | 5.675699e-49 | -8.615850e-47 |
| Msa0039900 | Msa1123380 | -0.810547 | 1.091944e-50 | -8.615850e-47 |
| Msa0039900 | Msa1127590 | -0.826050 | 3.355283e-54 | -8.615850e-47 |
| Msa0039900 | Msa1130400 | -0.806396 | 8.394152e-50 | -8.615850e-47 |
| Msa0039900 | Msa1137570 | -0.847116 | 1.416981e-59 | -8.615850e-47 |
| Msa0039900 | Msa1163650 | 0.808122 | 3.617157e-50 | -8.615850e-47 |
| Msa0039900 | Msa1163730 | -0.805318 | 1.414756e-49 | -8.615850e-47 |
| Msa0039900 | Msa1168550 | -0.826111 | 3.246062e-54 | -8.615850e-47 |
| Msa0039900 | Msa1168590 | -0.830162 | 3.429550e-55 | -8.615850e-47 |
| Msa0039900 | Msa1188710 | -0.803573 | 3.269074e-49 | -8.615850e-47 |
| Msa0039900 | Msa1193290 | -0.819132 | 1.363389e-52 | -8.615850e-47 |
| Msa0039900 | Msa1201810 | -0.815549 | 8.733677e-52 | -8.615850e-47 |
| Msa0039900 | Msa1204100 | 0.847727 | 9.632495e-60 | -8.615850e-47 |
| Msa0039900 | Msa1204830 | -0.808957 | 2.399383e-50 | -8.615850e-47 |
| Msa0039900 | Msa1208160 | -0.804815 | 1.802309e-49 | -8.615850e-47 |
| Msa0039900 | Msa1211140 | 0.802794 | 4.736883e-49 | -8.615850e-47 |
| Msa0039900 | Msa1226270 | -0.810692 | 1.015800e-50 | -8.615850e-47 |
| Msa0039900 | Msa1232740 | -0.801588 | 8.387910e-49 | -8.615850e-47 |
| Msa0039900 | Msa1253450 | -0.829171 | 5.976727e-55 | -8.615850e-47 |
| Msa0039900 | Msa1256470 | -0.823244 | 1.537442e-53 | -8.615850e-47 |
| Msa0039900 | Msa1265590 | -0.813136 | 2.982426e-51 | -8.615850e-47 |
| Msa0039900 | Msa1271130 | -0.836888 | 7.186951e-57 | -8.615850e-47 |
| Msa0039900 | Msa1276660 | -0.810579 | 1.074627e-50 | -8.615850e-47 |
| Msa0039900 | Msa1296460 | 0.820141 | 8.024198e-53 | -8.615850e-47 |
| Msa0039900 | Msa1298510 | -0.801372 | 9.289414e-49 | -8.615850e-47 |
| Msa0039900 | Msa1299290 | 0.800628 | 1.318278e-48 | -8.615850e-47 |
| Msa0039900 | Msa1313320 | -0.814179 | 1.757444e-51 | -8.615850e-47 |
| Msa0039900 | Msa1323690 | -0.828752 | 7.550589e-55 | -8.615850e-47 |
| Msa0039900 | Msa1329050 | 0.849062 | 4.115673e-60 | -8.615850e-47 |
| Msa0039900 | Msa1353470 | -0.804404 | 2.195349e-49 | -8.615850e-47 |
| Msa0039900 | Msa1357890 | -0.817535 | 3.135779e-52 | -8.615850e-47 |
| Msa0039900 | Msa1359270 | -0.800628 | 1.318510e-48 | -8.615850e-47 |
| Msa0039900 | Msa1361400 | -0.802308 | 5.967595e-49 | -8.615850e-47 |
| Msa0039900 | Msa1369690 | -0.807188 | 5.709201e-50 | -8.615850e-47 |
| Msa0039900 | Msa1373100 | -0.814393 | 1.576593e-51 | -8.615850e-47 |
| Msa0039900 | Msa1385890 | -0.814053 | 1.873851e-51 | -8.615850e-47 |
| Msa0039900 | Msa1386710 | -0.828335 | 9.518268e-55 | -8.615850e-47 |
| Msa0039900 | Msa1390690 | -0.809966 | 1.457193e-50 | -8.615850e-47 |
| Msa0039900 | Msa1390700 | -0.807765 | 4.308875e-50 | -8.615850e-47 |
| Msa0039900 | Msa1392900 | -0.804973 | 1.670475e-49 | -8.615850e-47 |
| Msa0039900 | Msa1392910 | -0.807744 | 4.352599e-50 | -8.615850e-47 |
| Msa0039900 | Msa1398090 | -0.824638 | 7.243564e-54 | -8.615850e-47 |
| Msa0039900 | Msa1411950 | -0.806506 | 7.959190e-50 | -8.615850e-47 |
| Msa0039900 | Msa1412060 | 0.806554 | 7.776266e-50 | -8.615850e-47 |
| Msa0039900 | Msa1418240 | -0.809016 | 2.330391e-50 | -8.615850e-47 |
| Msa0039900 | Msa1422950 | -0.814432 | 1.545228e-51 | -8.615850e-47 |
| Msa0039900 | Msa1439610 | -0.816652 | 4.952974e-52 | -8.615850e-47 |
| Msa0039900 | Msa1445390 | 0.818107 | 2.329605e-52 | -8.615850e-47 |
| Msa0039900 | Msa1446080 | -0.816360 | 5.757250e-52 | -8.615850e-47 |
| Msa0039900 | Msa1449340 | 0.816298 | 5.943194e-52 | -8.615850e-47 |
| Msa0039900 | Msa1450720 | -0.801719 | 7.886556e-49 | -8.615850e-47 |
| Msa0039900 | Msa1454680 | -0.803597 | 3.231926e-49 | -8.615850e-47 |
| Msa0039900 | Msa1460320 | 0.836487 | 9.091546e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0039900 | MtrunA17_Chr1g0204501 | 95.935 | 123 | 5 | 0 | 1 | 123 | 76 | 198 | 4.30e-72 | 213 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0039900 | AT5G19910.1 | 61.111 | 126 | 32 | 4 | 1 | 123 | 82 | 193 | 5.29e-34 | 117 |
| Msa0039900 | AT5G19910.2 | 49.359 | 156 | 32 | 5 | 1 | 123 | 82 | 223 | 1.21e-27 | 101 |
Find 127 sgRNAs with CRISPR-Local
Find 238 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTAATAGAAGTATGATTT+TGG | 0.136395 | 1_1:+69886298 | Msa0039900:five_prime_UTR |
| GATATCACTATTTACCTTAT+TGG | 0.153158 | 1_1:-69887691 | None:intergenic |
| TGATCGACCTTTGTTATAAT+TGG | 0.166073 | 1_1:+69886021 | Msa0039900:five_prime_UTR |
| GTAGTGCATGCACAGGTGGC+TGG | 0.230176 | 1_1:-69888240 | None:intergenic |
| GTTTCGTCCATTTGTTTCTA+AGG | 0.240006 | 1_1:+69885594 | Msa0039900:five_prime_UTR |
| GGAGTTGAAGTAATAATAAT+AGG | 0.256428 | 1_1:+69888450 | Msa0039900:three_prime_UTR |
| GGATCCTTGTATATATTCTT+TGG | 0.257913 | 1_1:-69886376 | None:intergenic |
| TCAAGCCACCCTGCATAAAT+TGG | 0.272984 | 1_1:+69886165 | Msa0039900:five_prime_UTR |
| GAACCTAGTGCTGCGCTTCC+TGG | 0.281659 | 1_1:+69888199 | Msa0039900:CDS |
| CAGTTTGAAAATTTAATATA+TGG | 0.284142 | 1_1:+69886056 | Msa0039900:five_prime_UTR |
| AGAAAGTGAGTGCTTTATAT+TGG | 0.289671 | 1_1:+69888397 | Msa0039900:exon |
| ACTTAAAGTATCTTCAATAT+TGG | 0.293258 | 1_1:+69887324 | Msa0039900:five_prime_UTR |
| TTTGTTATAATTGGCATATC+TGG | 0.303686 | 1_1:+69886030 | Msa0039900:five_prime_UTR |
| ATCTATTGTGCAGCACTTGT+TGG | 0.309094 | 1_1:-69885764 | None:intergenic |
| TATTTAAATGGTACAAGCTT+TGG | 0.323173 | 1_1:+69888707 | Msa0039900:three_prime_UTR |
| TGTATCAAAGCTCCCAATCT+TGG | 0.330312 | 1_1:-69885645 | None:intergenic |
| ATGATAAATTTAATATATTC+AGG | 0.332776 | 1_1:-69887353 | None:intergenic |
| GGAGTATGTCTGTATTTAAA+TGG | 0.347406 | 1_1:+69888695 | Msa0039900:three_prime_UTR |
| AACCGTTGTCGCCCATCATC+TGG | 0.352900 | 1_1:-69886397 | None:intergenic |
| GTTTCTTATTCTCCTCGGAT+TGG | 0.357717 | 1_1:+69885945 | Msa0039900:five_prime_UTR |
| ATTAAAGGTGAGAGCTAAAC+AGG | 0.361539 | 1_1:+69885702 | Msa0039900:five_prime_UTR |
| AAATTAAAATCTGTAGTATA+CGG | 0.364774 | 1_1:-69886249 | None:intergenic |
| ATTTCATACTCTCCCAAGAT+TGG | 0.365797 | 1_1:+69885632 | Msa0039900:five_prime_UTR |
| CTAGGTTCTGGAAGTGGTCT+TGG | 0.382881 | 1_1:-69888184 | None:intergenic |
| TAGTGCATGCACAGGTGGCT+GGG | 0.384524 | 1_1:-69888239 | None:intergenic |
| TTTCTTATTCTCCTCGGATT+GGG | 0.385548 | 1_1:+69885946 | Msa0039900:five_prime_UTR |
| AATGGCACATCCTACCAATA+AGG | 0.389767 | 1_1:+69887677 | Msa0039900:CDS |
| GGAAGCGCAGCACTAGGTTC+TGG | 0.393441 | 1_1:-69888196 | None:intergenic |
| TGTGCTACCCAACTTAAAAT+AGG | 0.393795 | 1_1:-69888524 | None:intergenic |
| AGAAGGGACATATGCCAATT+GGG | 0.399848 | 1_1:-69885813 | None:intergenic |
| CAGAAGGGACATATGCCAAT+TGG | 0.400766 | 1_1:-69885814 | None:intergenic |
| TTCTAGTTTCTTATTCTCCT+CGG | 0.403178 | 1_1:+69885940 | Msa0039900:five_prime_UTR |
| TCTACTTCTGGAAGAACTAT+AGG | 0.406034 | 1_1:+69888137 | Msa0039900:CDS |
| GAAATACTTCAGCTGATAGA+AGG | 0.409099 | 1_1:+69888371 | Msa0039900:CDS |
| TTATCGCTCCACTCCCCAAT+TGG | 0.410613 | 1_1:+69885799 | Msa0039900:five_prime_UTR |
| TTTGAGGACGAAGCATTCAT+TGG | 0.411048 | 1_1:+69887299 | Msa0039900:five_prime_UTR |
| GCGCTTAAGTACAGCTCAAC+AGG | 0.415512 | 1_1:-69886332 | None:intergenic |
| GAATGGAACACAAATACTAT+TGG | 0.422824 | 1_1:-69886194 | None:intergenic |
| GAGACGGATAAAACAGTTAG+AGG | 0.430861 | 1_1:-69885845 | None:intergenic |
| AAATTTGATAAAACAGAGAT+TGG | 0.431232 | 1_1:+69885667 | Msa0039900:five_prime_UTR |
| GGCACACACTTCACGCTGAA+TGG | 0.436638 | 1_1:-69886211 | None:intergenic |
| TGGTTATAACCAATTTATGC+AGG | 0.437509 | 1_1:-69886174 | None:intergenic |
| GTATCAAAGCTCCCAATCTT+GGG | 0.440002 | 1_1:-69885644 | None:intergenic |
| ATGCTTCGTCCTCAAAATAT+CGG | 0.443322 | 1_1:-69887292 | None:intergenic |
| TAGAAACAAATGGACGAAAC+AGG | 0.452632 | 1_1:-69885591 | None:intergenic |
| TAGTGCTGCGCTTCCTGGTC+CGG | 0.453206 | 1_1:+69888204 | Msa0039900:CDS |
| ATAGACAGCAGTTCTACTTC+TGG | 0.455964 | 1_1:+69888125 | Msa0039900:CDS |
| AGTGCATGCACAGGTGGCTG+GGG | 0.456575 | 1_1:-69888238 | None:intergenic |
| GGTTGAGTCGAGGCCGGACC+AGG | 0.460454 | 1_1:-69888217 | None:intergenic |
| TTTCATACTCTCCCAAGATT+GGG | 0.461521 | 1_1:+69885633 | Msa0039900:five_prime_UTR |
| CAGCCGTGGCTTGTCATACA+AGG | 0.470099 | 1_1:-69885511 | None:intergenic |
| GGCTGGGGTTGAGTCGAGGC+CGG | 0.471060 | 1_1:-69888223 | None:intergenic |
| TAAGGAGAGGCACTTTATGC+TGG | 0.471146 | 1_1:+69886089 | Msa0039900:five_prime_UTR |
| GAGTGTAAGCCAACCAGGCC+TGG | 0.473699 | 1_1:+69886121 | Msa0039900:five_prime_UTR |
| TCACTATTTACCTTATTGGT+AGG | 0.479734 | 1_1:-69887687 | None:intergenic |
| AGGGAAGCCTTAGAAACAAA+TGG | 0.488857 | 1_1:-69885601 | None:intergenic |
| TATACGGAAAGCCCTTGAAA+AGG | 0.490993 | 1_1:-69886233 | None:intergenic |
| TGATAAATTTAATATATTCA+GGG | 0.495109 | 1_1:-69887352 | None:intergenic |
| GAAGGATGAACGATGTATCA+AGG | 0.498494 | 1_1:-69885891 | None:intergenic |
| GGAAGAACTATAGGAACAAT+CGG | 0.500395 | 1_1:+69888146 | Msa0039900:CDS |
| TGGGAGAGTATGAAATCTAC+AGG | 0.502485 | 1_1:-69885625 | None:intergenic |
| GAGTTGAAGTAATAATAATA+GGG | 0.503829 | 1_1:+69888451 | Msa0039900:three_prime_UTR |
| TTGAGGACGAAGCATTCATT+GGG | 0.512149 | 1_1:+69887300 | Msa0039900:five_prime_UTR |
| TCTAACGAGTTTCAACCGTC+TGG | 0.512281 | 1_1:-69888568 | None:intergenic |
| ATACTTTCTTCCATCGCAGA+TGG | 0.517896 | 1_1:+69888428 | Msa0039900:three_prime_UTR |
| GCAACACTTGTAGCAGGTAC+TGG | 0.519969 | 1_1:-69888265 | None:intergenic |
| GAAGAAGCTCAAGAAAATAG+AGG | 0.520705 | 1_1:-69887632 | None:intergenic |
| GAGTGGGGAGTCACAGAGGA+AGG | 0.522359 | 1_1:-69885472 | None:intergenic |
| AAAATGAAATTGATCAAGAC+AGG | 0.523673 | 1_1:-69886274 | None:intergenic |
| ATATACAAGGATCCAGATGA+TGG | 0.525951 | 1_1:+69886385 | Msa0039900:five_prime_UTR |
| AAGGTAATTGACAGGAAAAG+AGG | 0.529830 | 1_1:-69885568 | None:intergenic |
| AAAAGAGCAGACTGATCAAA+GGG | 0.534798 | 1_1:-69885986 | None:intergenic |
| GGTTATAACCAATTTATGCA+GGG | 0.536876 | 1_1:-69886173 | None:intergenic |
| GTTATGAGTGTAAGCCAACC+AGG | 0.539396 | 1_1:+69886116 | Msa0039900:five_prime_UTR |
| ACAGGAAAAGAGGCTAATGA+TGG | 0.543975 | 1_1:-69885558 | None:intergenic |
| AAGGATGAACGATGTATCAA+GGG | 0.547169 | 1_1:-69885890 | None:intergenic |
| GAGCTGTACTTAAGCGCTGA+TGG | 0.548171 | 1_1:+69886338 | Msa0039900:five_prime_UTR |
| GGACCAGGAAGCGCAGCACT+AGG | 0.549090 | 1_1:-69888202 | None:intergenic |
| GCAGCACTAGGTTCTGGAAG+TGG | 0.553833 | 1_1:-69888190 | None:intergenic |
| ATACGGAAAGCCCTTGAAAA+GGG | 0.555379 | 1_1:-69886232 | None:intergenic |
| CAAAAGAGCAGACTGATCAA+AGG | 0.567861 | 1_1:-69885987 | None:intergenic |
| ATACCGTATGGCATTGGAGA+AGG | 0.568373 | 1_1:-69888313 | None:intergenic |
| TACTTTCTTCCATCGCAGAT+GGG | 0.571187 | 1_1:+69888429 | Msa0039900:three_prime_UTR |
| GACATATGCCAATTGGGGAG+TGG | 0.571738 | 1_1:-69885807 | None:intergenic |
| GAAAACCATACAGTGGATGT+AGG | 0.571854 | 1_1:-69886461 | None:intergenic |
| GTAAGCCAACCAGGCCTGGT+TGG | 0.572231 | 1_1:+69886125 | Msa0039900:five_prime_UTR |
| AGGTGGCTGGGGTTGAGTCG+AGG | 0.574599 | 1_1:-69888227 | None:intergenic |
| GTTGATCATGACTAATGAGT+GGG | 0.575424 | 1_1:-69885488 | None:intergenic |
| AACCCTTGTATGACAAGCCA+CGG | 0.581906 | 1_1:+69885508 | Msa0039900:five_prime_UTR |
| GAAACAGGAAGGTAATTGAC+AGG | 0.583410 | 1_1:-69885576 | None:intergenic |
| AGAGTATGAAATCTACAGGA+AGG | 0.585843 | 1_1:-69885621 | None:intergenic |
| GTTAGAGGAGGAATGACAGA+AGG | 0.586720 | 1_1:-69885830 | None:intergenic |
| GTCACAGCAACACTTGTAGC+AGG | 0.586975 | 1_1:-69888271 | None:intergenic |
| ACCATACAGTGGATGTAGGT+AGG | 0.594759 | 1_1:-69886457 | None:intergenic |
| ATCCAGATGATGGGCGACAA+CGG | 0.595215 | 1_1:+69886395 | Msa0039900:five_prime_UTR |
| GCTCCTTCTCCAATGCCATA+CGG | 0.595355 | 1_1:+69888310 | Msa0039900:CDS |
| GCTTGCAGTGAGAGCAGCCG+TGG | 0.596439 | 1_1:-69885525 | None:intergenic |
| ACTTCAACTCCCATCTGCGA+TGG | 0.598476 | 1_1:-69888438 | None:intergenic |
| TTGATGTTACAAATGATGAA+AGG | 0.600431 | 1_1:+69888674 | Msa0039900:three_prime_UTR |
| GGTGGTAGTGCATGCACAGG+TGG | 0.607758 | 1_1:-69888244 | None:intergenic |
| TATACAAGGATCCAGATGAT+GGG | 0.614053 | 1_1:+69886386 | Msa0039900:five_prime_UTR |
| GAGTATGAAATCTACAGGAA+GGG | 0.616379 | 1_1:-69885620 | None:intergenic |
| AAACAGGAAAGGTGGAATGA+CGG | 0.625544 | 1_1:+69885718 | Msa0039900:five_prime_UTR |
| AGATATGCCAATTATAACAA+AGG | 0.628476 | 1_1:-69886028 | None:intergenic |
| ACGGATAAAACAGTTAGAGG+AGG | 0.632952 | 1_1:-69885842 | None:intergenic |
| TCCATATAGTTAAAGGCGGG+GGG | 0.633111 | 1_1:+69885381 | None:intergenic |
| TGAGAGCTAAACAGGAAAGG+TGG | 0.639079 | 1_1:+69885710 | Msa0039900:five_prime_UTR |
| AACAAATGGACGAAACAGGA+AGG | 0.640927 | 1_1:-69885587 | None:intergenic |
| TAGGCCAAAGAATATATACA+AGG | 0.644719 | 1_1:+69886372 | Msa0039900:five_prime_UTR |
| GAAGGGACATATGCCAATTG+GGG | 0.644738 | 1_1:-69885812 | None:intergenic |
| TCAAGAAAATAGAGGCAGTG+AGG | 0.646000 | 1_1:-69887624 | None:intergenic |
| TTAGAGGAGGAATGACAGAA+GGG | 0.646052 | 1_1:-69885829 | None:intergenic |
| GGTTGATCATGACTAATGAG+TGG | 0.646535 | 1_1:-69885489 | None:intergenic |
| AGGGAAAACATTCTTCACAA+AGG | 0.647481 | 1_1:-69885452 | None:intergenic |
| AGTGGGGAGTCACAGAGGAA+GGG | 0.648009 | 1_1:-69885471 | None:intergenic |
| AGGTGAGAGCTAAACAGGAA+AGG | 0.648812 | 1_1:+69885707 | Msa0039900:five_prime_UTR |
| TATAACCAATTTATGCAGGG+TGG | 0.649169 | 1_1:-69886170 | None:intergenic |
| GGATGTAGGTAGGATTAGCA+AGG | 0.649374 | 1_1:-69886447 | None:intergenic |
| ATTGAAAATACATATCCAGA+CGG | 0.649827 | 1_1:+69888553 | Msa0039900:three_prime_UTR |
| ACTGGTGGTAGTGCATGCAC+AGG | 0.653824 | 1_1:-69888247 | None:intergenic |
| TGCTGTCTAAACCCAATCCG+AGG | 0.660940 | 1_1:-69885957 | None:intergenic |
| AGGATGAACGATGTATCAAG+GGG | 0.675967 | 1_1:-69885889 | None:intergenic |
| TAATGAGTGGGGAGTCACAG+AGG | 0.683280 | 1_1:-69885476 | None:intergenic |
| AGCCGTGGCTTGTCATACAA+GGG | 0.688236 | 1_1:-69885510 | None:intergenic |
| ACACTTGTAGCAGGTACTGG+TGG | 0.693490 | 1_1:-69888262 | None:intergenic |
| TTGATCATGACTAATGAGTG+GGG | 0.702989 | 1_1:-69885487 | None:intergenic |
| TTTGCACTACCGGAGCCAGG+GGG | 0.746793 | 1_1:-69888337 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGATAAATTTAATATATTCA+GGG | - | chr1_1:69887355-69887374 | None:intergenic | 10.0% |
| !! | ATGATAAATTTAATATATTC+AGG | - | chr1_1:69887356-69887375 | None:intergenic | 10.0% |
| !!! | AATTTCAAATTATCTTTTAA+TGG | + | chr1_1:69888623-69888642 | Msa0039900:three_prime_UTR | 10.0% |
| !! | CAGTTTGAAAATTTAATATA+TGG | + | chr1_1:69886056-69886075 | Msa0039900:five_prime_UTR | 15.0% |
| !! | AAATTAAAATCTGTAGTATA+CGG | - | chr1_1:69886252-69886271 | None:intergenic | 15.0% |
| !!! | ATTAATAGAAGTATGATTTT+GGG | + | chr1_1:69886299-69886318 | Msa0039900:five_prime_UTR | 15.0% |
| !!! | TTTATTTAATTTCAAGTACA+TGG | + | chr1_1:69886683-69886702 | Msa0039900:intron | 15.0% |
| !!! | GAAATAATTTTACAATTCAT+TGG | - | chr1_1:69888600-69888619 | None:intergenic | 15.0% |
| !! | AAATTTGATAAAACAGAGAT+TGG | + | chr1_1:69885667-69885686 | Msa0039900:five_prime_UTR | 20.0% |
| !! | CAAAAATAAAAAATCAGAGA+CGG | - | chr1_1:69885864-69885883 | None:intergenic | 20.0% |
| !!! | CATTAATAGAAGTATGATTT+TGG | + | chr1_1:69886298-69886317 | Msa0039900:five_prime_UTR | 20.0% |
| !! | AATTGTTTAGTTAGAAAACA+AGG | + | chr1_1:69886572-69886591 | Msa0039900:intron | 20.0% |
| !! | ATGTTGGAATTATAAGTAAT+CGG | + | chr1_1:69886613-69886632 | Msa0039900:intron | 20.0% |
| !!! | ATGTTTTTTTGTCAAAAAAG+GGG | - | chr1_1:69887164-69887183 | None:intergenic | 20.0% |
| !!! | CATGTTTTTTTGTCAAAAAA+GGG | - | chr1_1:69887165-69887184 | None:intergenic | 20.0% |
| !!! | ACTTAAAGTATCTTCAATAT+TGG | + | chr1_1:69887324-69887343 | Msa0039900:five_prime_UTR | 20.0% |
| !!! | ATGTTTTACAATTCTACTTA+AGG | + | chr1_1:69887423-69887442 | Msa0039900:intron | 20.0% |
| !!! | TGTTTTACAATTCTACTTAA+GGG | + | chr1_1:69887424-69887443 | Msa0039900:intron | 20.0% |
| !!! | AGAAATCATGATTTTGTAAA+AGG | - | chr1_1:69887724-69887743 | None:intergenic | 20.0% |
| !!! | ATTACTTGCATTTTAAGTTT+AGG | + | chr1_1:69888041-69888060 | Msa0039900:intron | 20.0% |
| !! | GAGTTGAAGTAATAATAATA+GGG | + | chr1_1:69888451-69888470 | Msa0039900:three_prime_UTR | 20.0% |
| ! | CATGTTAGAAAAATTGTTAG+TGG | + | chr1_1:69885416-69885435 | Msa0039900:five_prime_UTR | 25.0% |
| ! | TGGTAAGCCTAAAAAATTAA+AGG | + | chr1_1:69885687-69885706 | Msa0039900:five_prime_UTR | 25.0% |
| ! | AGATATGCCAATTATAACAA+AGG | - | chr1_1:69886031-69886050 | None:intergenic | 25.0% |
| !! | TTTGTTATAATTGGCATATC+TGG | + | chr1_1:69886030-69886049 | Msa0039900:five_prime_UTR | 25.0% |
| ! | ATATATGGTGCAAAAAGATA+AGG | + | chr1_1:69886071-69886090 | Msa0039900:five_prime_UTR | 25.0% |
| ! | AAAATGAAATTGATCAAGAC+AGG | - | chr1_1:69886277-69886296 | None:intergenic | 25.0% |
| ! | ATAAAATGAAAACCATACAG+TGG | - | chr1_1:69886471-69886490 | None:intergenic | 25.0% |
| !!! | AGATTATTCTAGAGTAGATT+AGG | + | chr1_1:69886651-69886670 | Msa0039900:intron | 25.0% |
| ! | AGAAATTACAATGTGTTTCA+AGG | - | chr1_1:69887123-69887142 | None:intergenic | 25.0% |
| ! | ATTGTAATTTCTCTTAATCC+AGG | + | chr1_1:69887131-69887150 | Msa0039900:intron | 25.0% |
| !!! | CCATGTTTTTTTGTCAAAAA+AGG | - | chr1_1:69887166-69887185 | None:intergenic | 25.0% |
| !!! | CCTTTTTTGACAAAAAAACA+TGG | + | chr1_1:69887163-69887182 | Msa0039900:intron | 25.0% |
| ! | GCACTGAATTATGTTAAATA+GGG | + | chr1_1:69887446-69887465 | Msa0039900:intron | 25.0% |
| !! | ACTCTATAAGAATTTTACAC+AGG | + | chr1_1:69887471-69887490 | Msa0039900:intron | 25.0% |
| !! | CTCTATAAGAATTTTACACA+GGG | + | chr1_1:69887472-69887491 | Msa0039900:intron | 25.0% |
| ! | TAGAATAAAAATGACAGAAC+TGG | - | chr1_1:69887539-69887558 | None:intergenic | 25.0% |
| ! | GATATCACTATTTACCTTAT+TGG | - | chr1_1:69887694-69887713 | None:intergenic | 25.0% |
| ! | AGTACTATAATATGAAATCC+AGG | - | chr1_1:69887747-69887766 | None:intergenic | 25.0% |
| ! | AACTTAAAATGCAAGTAATC+TGG | - | chr1_1:69888040-69888059 | None:intergenic | 25.0% |
| ! | ACCAAAAATTTATCTGTTGT+AGG | + | chr1_1:69888093-69888112 | Msa0039900:intron | 25.0% |
| !! | TCCTACAACAGATAAATTTT+TGG | - | chr1_1:69888097-69888116 | None:intergenic | 25.0% |
| ! | GGAGTTGAAGTAATAATAAT+AGG | + | chr1_1:69888450-69888469 | Msa0039900:three_prime_UTR | 25.0% |
| !! | TCTGGATATGTATTTTCAAT+TGG | - | chr1_1:69888553-69888572 | None:intergenic | 25.0% |
| ! | ATTGAAAATACATATCCAGA+CGG | + | chr1_1:69888553-69888572 | Msa0039900:three_prime_UTR | 25.0% |
| ! | TTGATGTTACAAATGATGAA+AGG | + | chr1_1:69888674-69888693 | Msa0039900:three_prime_UTR | 25.0% |
| ! | TATTTAAATGGTACAAGCTT+TGG | + | chr1_1:69888707-69888726 | Msa0039900:three_prime_UTR | 25.0% |
| AAAAATTGTTAGTGGTTGTG+AGG | + | chr1_1:69885424-69885443 | Msa0039900:five_prime_UTR | 30.0% | |
| !!! | GCTCTCACCTTTAATTTTTT+AGG | - | chr1_1:69885697-69885716 | None:intergenic | 30.0% |
| !! | TCTCAAAGTTTTGTACAAGA+AGG | - | chr1_1:69885912-69885931 | None:intergenic | 30.0% |
| !! | TTCTAGTTTCTTATTCTCCT+CGG | + | chr1_1:69885940-69885959 | Msa0039900:five_prime_UTR | 30.0% |
| ACAAAGGTCGATCATAAAAA+AGG | - | chr1_1:69886015-69886034 | None:intergenic | 30.0% | |
| ! | TGATCGACCTTTGTTATAAT+TGG | + | chr1_1:69886021-69886040 | Msa0039900:five_prime_UTR | 30.0% |
| GGTTATAACCAATTTATGCA+GGG | - | chr1_1:69886176-69886195 | None:intergenic | 30.0% | |
| TGGTTATAACCAATTTATGC+AGG | - | chr1_1:69886177-69886196 | None:intergenic | 30.0% | |
| GAATGGAACACAAATACTAT+TGG | - | chr1_1:69886197-69886216 | None:intergenic | 30.0% | |
| !!! | AGTATGATTTTGGGATTTGT+TGG | + | chr1_1:69886308-69886327 | Msa0039900:five_prime_UTR | 30.0% |
| TAGGCCAAAGAATATATACA+AGG | + | chr1_1:69886372-69886391 | Msa0039900:five_prime_UTR | 30.0% | |
| GGATCCTTGTATATATTCTT+TGG | - | chr1_1:69886379-69886398 | None:intergenic | 30.0% | |
| CAAGGAATAAGTTGTGAAAA+AGG | + | chr1_1:69886590-69886609 | Msa0039900:intron | 30.0% | |
| TAAGTTGTGAAAAAGGATGT+TGG | + | chr1_1:69886597-69886616 | Msa0039900:intron | 30.0% | |
| TGAGAGAATATGATAGATGA+AGG | - | chr1_1:69886818-69886837 | None:intergenic | 30.0% | |
| TCCTCAATACATCTATTAAG+CGG | - | chr1_1:69887090-69887109 | None:intergenic | 30.0% | |
| TTACAATGTGTTTCAAGGAA+AGG | - | chr1_1:69887118-69887137 | None:intergenic | 30.0% | |
| ! | GTTACTCTTTTGAACAGATT+TGG | + | chr1_1:69887262-69887281 | Msa0039900:intron | 30.0% |
| ! | GGCACTGAATTATGTTAAAT+AGG | + | chr1_1:69887445-69887464 | Msa0039900:intron | 30.0% |
| !!! | GCTCATTTTTTATGAATGCT+AGG | + | chr1_1:69887598-69887617 | Msa0039900:intron | 30.0% |
| TCACTATTTACCTTATTGGT+AGG | - | chr1_1:69887690-69887709 | None:intergenic | 30.0% | |
| TACAAAATCATGATTTCTCC+TGG | + | chr1_1:69887726-69887745 | Msa0039900:intron | 30.0% | |
| ! | TACAACAAAATTTGTTCTCG+AGG | - | chr1_1:69887810-69887829 | None:intergenic | 30.0% |
| ATGTAATGTCTGTCACTAAT+AGG | + | chr1_1:69887972-69887991 | Msa0039900:intron | 30.0% | |
| ! | TAATAGGTTCTTTGTTTGCT+TGG | + | chr1_1:69887988-69888007 | Msa0039900:intron | 30.0% |
| AGAAAGTGAGTGCTTTATAT+TGG | + | chr1_1:69888397-69888416 | Msa0039900:exon | 30.0% | |
| !! | TTCTGTGACCTATTTTAAGT+TGG | + | chr1_1:69888516-69888535 | Msa0039900:three_prime_UTR | 30.0% |
| !!! | TCTGTGACCTATTTTAAGTT+GGG | + | chr1_1:69888517-69888536 | Msa0039900:three_prime_UTR | 30.0% |
| GGAGTATGTCTGTATTTAAA+TGG | + | chr1_1:69888695-69888714 | Msa0039900:three_prime_UTR | 30.0% | |
| AGGGAAAACATTCTTCACAA+AGG | - | chr1_1:69885455-69885474 | None:intergenic | 35.0% | |
| TTGATCATGACTAATGAGTG+GGG | - | chr1_1:69885490-69885509 | None:intergenic | 35.0% | |
| GTTGATCATGACTAATGAGT+GGG | - | chr1_1:69885491-69885510 | None:intergenic | 35.0% | |
| AAGGTAATTGACAGGAAAAG+AGG | - | chr1_1:69885571-69885590 | None:intergenic | 35.0% | |
| TAGAAACAAATGGACGAAAC+AGG | - | chr1_1:69885594-69885613 | None:intergenic | 35.0% | |
| !! | GTTTCGTCCATTTGTTTCTA+AGG | + | chr1_1:69885594-69885613 | Msa0039900:five_prime_UTR | 35.0% |
| GAGTATGAAATCTACAGGAA+GGG | - | chr1_1:69885623-69885642 | None:intergenic | 35.0% | |
| AGAGTATGAAATCTACAGGA+AGG | - | chr1_1:69885624-69885643 | None:intergenic | 35.0% | |
| ATTTCATACTCTCCCAAGAT+TGG | + | chr1_1:69885632-69885651 | Msa0039900:five_prime_UTR | 35.0% | |
| TTTCATACTCTCCCAAGATT+GGG | + | chr1_1:69885633-69885652 | Msa0039900:five_prime_UTR | 35.0% | |
| ATTAAAGGTGAGAGCTAAAC+AGG | + | chr1_1:69885702-69885721 | Msa0039900:five_prime_UTR | 35.0% | |
| AAGGATGAACGATGTATCAA+GGG | - | chr1_1:69885893-69885912 | None:intergenic | 35.0% | |
| TTTCTTATTCTCCTCGGATT+GGG | + | chr1_1:69885946-69885965 | Msa0039900:five_prime_UTR | 35.0% | |
| AAAAGAGCAGACTGATCAAA+GGG | - | chr1_1:69885989-69886008 | None:intergenic | 35.0% | |
| TATAACCAATTTATGCAGGG+TGG | - | chr1_1:69886173-69886192 | None:intergenic | 35.0% | |
| ATATACAAGGATCCAGATGA+TGG | + | chr1_1:69886385-69886404 | Msa0039900:five_prime_UTR | 35.0% | |
| TATACAAGGATCCAGATGAT+GGG | + | chr1_1:69886386-69886405 | Msa0039900:five_prime_UTR | 35.0% | |
| TTAAGCAATAGCTGCATATG+TGG | + | chr1_1:69886518-69886537 | Msa0039900:intron | 35.0% | |
| TGTCGAGTCATGTATTTGAA+AGG | + | chr1_1:69886542-69886561 | Msa0039900:intron | 35.0% | |
| GTCGAGTCATGTATTTGAAA+GGG | + | chr1_1:69886543-69886562 | Msa0039900:intron | 35.0% | |
| ! | TCTAGAGTAGATTAGGTGTT+TGG | + | chr1_1:69886658-69886677 | Msa0039900:intron | 35.0% |
| CAAGTACATGGTCTGTTTAA+CGG | + | chr1_1:69886695-69886714 | Msa0039900:intron | 35.0% | |
| AAGTACATGGTCTGTTTAAC+GGG | + | chr1_1:69886696-69886715 | Msa0039900:intron | 35.0% | |
| GACATTGAGTTTAGTGACAT+TGG | + | chr1_1:69886731-69886750 | Msa0039900:intron | 35.0% | |
| ! | ACATTGAGCTTTTGTGACAT+CGG | + | chr1_1:69886899-69886918 | Msa0039900:intron | 35.0% |
| TCCGCTTAATAGATGTATTG+AGG | + | chr1_1:69887086-69887105 | Msa0039900:intron | 35.0% | |
| ATGCTTCGTCCTCAAAATAT+CGG | - | chr1_1:69887295-69887314 | None:intergenic | 35.0% | |
| ! | TAGCGATGCTTTGTTCAAAT+GGG | + | chr1_1:69887557-69887576 | Msa0039900:intron | 35.0% |
| GAAGAAGCTCAAGAAAATAG+AGG | - | chr1_1:69887635-69887654 | None:intergenic | 35.0% | |
| ! | TGCAAATTTTCGCAATGCAA+TGG | + | chr1_1:69887659-69887678 | Msa0039900:CDS | 35.0% |
| GAGACAAAGATAGACAGATA+TGG | + | chr1_1:69887843-69887862 | Msa0039900:intron | 35.0% | |
| TACCTACTGCATCACAATTT+CGG | - | chr1_1:69887909-69887928 | None:intergenic | 35.0% | |
| TTTCTTTGCCTTGTGTTTCT+TGG | + | chr1_1:69888066-69888085 | Msa0039900:intron | 35.0% | |
| ! | TCTACTTCTGGAAGAACTAT+AGG | + | chr1_1:69888137-69888156 | Msa0039900:CDS | 35.0% |
| GGAAGAACTATAGGAACAAT+CGG | + | chr1_1:69888146-69888165 | Msa0039900:CDS | 35.0% | |
| !!! | CATGTCATTTTTTGCACTAC+CGG | - | chr1_1:69888350-69888369 | None:intergenic | 35.0% |
| GAAATACTTCAGCTGATAGA+AGG | + | chr1_1:69888371-69888390 | Msa0039900:CDS | 35.0% | |
| TGTGCTACCCAACTTAAAAT+AGG | - | chr1_1:69888527-69888546 | None:intergenic | 35.0% | |
| GGTTGATCATGACTAATGAG+TGG | - | chr1_1:69885492-69885511 | None:intergenic | 40.0% | |
| ACAGGAAAAGAGGCTAATGA+TGG | - | chr1_1:69885561-69885580 | None:intergenic | 40.0% | |
| GAAACAGGAAGGTAATTGAC+AGG | - | chr1_1:69885579-69885598 | None:intergenic | 40.0% | |
| AACAAATGGACGAAACAGGA+AGG | - | chr1_1:69885590-69885609 | None:intergenic | 40.0% | |
| AGGGAAGCCTTAGAAACAAA+TGG | - | chr1_1:69885604-69885623 | None:intergenic | 40.0% | |
| ! | TGGGAGAGTATGAAATCTAC+AGG | - | chr1_1:69885628-69885647 | None:intergenic | 40.0% |
| GTATCAAAGCTCCCAATCTT+GGG | - | chr1_1:69885647-69885666 | None:intergenic | 40.0% | |
| TGTATCAAAGCTCCCAATCT+TGG | - | chr1_1:69885648-69885667 | None:intergenic | 40.0% | |
| AAACAGGAAAGGTGGAATGA+CGG | + | chr1_1:69885718-69885737 | Msa0039900:five_prime_UTR | 40.0% | |
| ATCTATTGTGCAGCACTTGT+TGG | - | chr1_1:69885767-69885786 | None:intergenic | 40.0% | |
| AGAAGGGACATATGCCAATT+GGG | - | chr1_1:69885816-69885835 | None:intergenic | 40.0% | |
| TTAGAGGAGGAATGACAGAA+GGG | - | chr1_1:69885832-69885851 | None:intergenic | 40.0% | |
| ACGGATAAAACAGTTAGAGG+AGG | - | chr1_1:69885845-69885864 | None:intergenic | 40.0% | |
| GAGACGGATAAAACAGTTAG+AGG | - | chr1_1:69885848-69885867 | None:intergenic | 40.0% | |
| AGGATGAACGATGTATCAAG+GGG | - | chr1_1:69885892-69885911 | None:intergenic | 40.0% | |
| GAAGGATGAACGATGTATCA+AGG | - | chr1_1:69885894-69885913 | None:intergenic | 40.0% | |
| GTTTCTTATTCTCCTCGGAT+TGG | + | chr1_1:69885945-69885964 | Msa0039900:five_prime_UTR | 40.0% | |
| CAAAAGAGCAGACTGATCAA+AGG | - | chr1_1:69885990-69886009 | None:intergenic | 40.0% | |
| TGGTGCAAAAAGATAAGGAG+AGG | + | chr1_1:69886076-69886095 | Msa0039900:five_prime_UTR | 40.0% | |
| ! | CTTCCTTTGAAAAACCAACC+AGG | - | chr1_1:69886142-69886161 | None:intergenic | 40.0% |
| ATACGGAAAGCCCTTGAAAA+GGG | - | chr1_1:69886235-69886254 | None:intergenic | 40.0% | |
| TATACGGAAAGCCCTTGAAA+AGG | - | chr1_1:69886236-69886255 | None:intergenic | 40.0% | |
| !!! | GCTGATGGTTGTTTTTCTCT+AGG | + | chr1_1:69886353-69886372 | Msa0039900:five_prime_UTR | 40.0% |
| GAAAACCATACAGTGGATGT+AGG | - | chr1_1:69886464-69886483 | None:intergenic | 40.0% | |
| TAAAGTCACCGATGTCACAA+AGG | + | chr1_1:69886849-69886868 | Msa0039900:intron | 40.0% | |
| ACATTGAGCCTTTGTGACAT+CGG | - | chr1_1:69886860-69886879 | None:intergenic | 40.0% | |
| TCAATGTCACGGAAACTACT+TGG | + | chr1_1:69886873-69886892 | Msa0039900:intron | 40.0% | |
| CAATGTCACGGAAACTACTT+GGG | + | chr1_1:69886874-69886893 | Msa0039900:intron | 40.0% | |
| ACCCAAGTAGTTTCCTTGTT+GGG | + | chr1_1:69887048-69887067 | Msa0039900:intron | 40.0% | |
| ACCCAACAAGGAAACTACTT+GGG | - | chr1_1:69887052-69887071 | None:intergenic | 40.0% | |
| AACCCAACAAGGAAACTACT+TGG | - | chr1_1:69887053-69887072 | None:intergenic | 40.0% | |
| CAAAAAAGGGGAATTTCACC+TGG | - | chr1_1:69887152-69887171 | None:intergenic | 40.0% | |
| ! | TTTGAGGACGAAGCATTCAT+TGG | + | chr1_1:69887299-69887318 | Msa0039900:five_prime_UTR | 40.0% |
| ! | TTGAGGACGAAGCATTCATT+GGG | + | chr1_1:69887300-69887319 | Msa0039900:five_prime_UTR | 40.0% |
| CTTATTGTCCCACTAAAGTC+TGG | + | chr1_1:69887390-69887409 | Msa0039900:intron | 40.0% | |
| ! | CTAGCGATGCTTTGTTCAAA+TGG | + | chr1_1:69887556-69887575 | Msa0039900:intron | 40.0% |
| TCAAGAAAATAGAGGCAGTG+AGG | - | chr1_1:69887627-69887646 | None:intergenic | 40.0% | |
| AATGGCACATCCTACCAATA+AGG | + | chr1_1:69887677-69887696 | Msa0039900:CDS | 40.0% | |
| TACCGAAATTGTGATGCAGT+AGG | + | chr1_1:69887904-69887923 | Msa0039900:intron | 40.0% | |
| TGGTCAATCCAAGAAACACA+AGG | - | chr1_1:69888077-69888096 | None:intergenic | 40.0% | |
| ATAGACAGCAGTTCTACTTC+TGG | + | chr1_1:69888125-69888144 | Msa0039900:CDS | 40.0% | |
| ATACTTTCTTCCATCGCAGA+TGG | + | chr1_1:69888428-69888447 | Msa0039900:three_prime_UTR | 40.0% | |
| TACTTTCTTCCATCGCAGAT+GGG | + | chr1_1:69888429-69888448 | Msa0039900:three_prime_UTR | 40.0% | |
| AACCCTTGTATGACAAGCCA+CGG | + | chr1_1:69885508-69885527 | Msa0039900:five_prime_UTR | 45.0% | |
| AGGTGAGAGCTAAACAGGAA+AGG | + | chr1_1:69885707-69885726 | Msa0039900:five_prime_UTR | 45.0% | |
| TGAGAGCTAAACAGGAAAGG+TGG | + | chr1_1:69885710-69885729 | Msa0039900:five_prime_UTR | 45.0% | |
| GAAGGGACATATGCCAATTG+GGG | - | chr1_1:69885815-69885834 | None:intergenic | 45.0% | |
| CAGAAGGGACATATGCCAAT+TGG | - | chr1_1:69885817-69885836 | None:intergenic | 45.0% | |
| GTTAGAGGAGGAATGACAGA+AGG | - | chr1_1:69885833-69885852 | None:intergenic | 45.0% | |
| !! | TAAGGAGAGGCACTTTATGC+TGG | + | chr1_1:69886089-69886108 | Msa0039900:five_prime_UTR | 45.0% |
| GTTATGAGTGTAAGCCAACC+AGG | + | chr1_1:69886116-69886135 | Msa0039900:five_prime_UTR | 45.0% | |
| TTTGAAAAACCAACCAGGCC+TGG | - | chr1_1:69886137-69886156 | None:intergenic | 45.0% | |
| !!! | AGGCCTGGTTGGTTTTTCAA+AGG | + | chr1_1:69886136-69886155 | Msa0039900:five_prime_UTR | 45.0% |
| TCAAGCCACCCTGCATAAAT+TGG | + | chr1_1:69886165-69886184 | Msa0039900:five_prime_UTR | 45.0% | |
| ! | TGAAGTGTGTGCCCTTTTCA+AGG | + | chr1_1:69886221-69886240 | Msa0039900:five_prime_UTR | 45.0% |
| ! | GAAGTGTGTGCCCTTTTCAA+GGG | + | chr1_1:69886222-69886241 | Msa0039900:five_prime_UTR | 45.0% |
| ! | ACAACGGTTTTTGCTGGAAC+TGG | + | chr1_1:69886411-69886430 | Msa0039900:five_prime_UTR | 45.0% |
| ! | GGATGTAGGTAGGATTAGCA+AGG | - | chr1_1:69886450-69886469 | None:intergenic | 45.0% |
| TCCTACCTACATCCACTGTA+TGG | + | chr1_1:69886456-69886475 | Msa0039900:intron | 45.0% | |
| ACCATACAGTGGATGTAGGT+AGG | - | chr1_1:69886460-69886479 | None:intergenic | 45.0% | |
| !! | TCTGTTTAACGGGTTGCACT+TGG | + | chr1_1:69886706-69886725 | Msa0039900:intron | 45.0% |
| GTCACAAAGGCTCAATGTCA+CGG | + | chr1_1:69886862-69886881 | Msa0039900:intron | 45.0% | |
| TGTGACATCGGTGACTTTAG+TGG | + | chr1_1:69886911-69886930 | Msa0039900:intron | 45.0% | |
| GAGTTGCACTTGGATGACAT+TGG | - | chr1_1:69887021-69887040 | None:intergenic | 45.0% | |
| GGAAACTACTTGGGTGACAT+TGG | - | chr1_1:69886883-69886902 | None:intergenic | 45.0% | |
| CACCCAAGTAGTTTCCTTGT+TGG | + | chr1_1:69887047-69887066 | Msa0039900:intron | 45.0% | |
| CATGCTTTGTCATTGCTGCT+TGG | + | chr1_1:69887186-69887205 | Msa0039900:intron | 45.0% | |
| ! | GGCTCAGAACCGATATTTTG+AGG | + | chr1_1:69887283-69887302 | Msa0039900:five_prime_UTR | 45.0% |
| TCCCACTAAAGTCTGGAAGA+GGG | + | chr1_1:69887397-69887416 | Msa0039900:intron | 45.0% | |
| TCCCTCTTCCAGACTTTAGT+GGG | - | chr1_1:69887401-69887420 | None:intergenic | 45.0% | |
| ATCCCTCTTCCAGACTTTAG+TGG | - | chr1_1:69887402-69887421 | None:intergenic | 45.0% | |
| ! | CGATGCTTTGTTCAAATGGG+TGG | + | chr1_1:69887560-69887579 | Msa0039900:intron | 45.0% |
| ! | ATACCGTATGGCATTGGAGA+AGG | - | chr1_1:69888316-69888335 | None:intergenic | 45.0% |
| TCTAACGAGTTTCAACCGTC+TGG | - | chr1_1:69888571-69888590 | None:intergenic | 45.0% | |
| TAATGAGTGGGGAGTCACAG+AGG | - | chr1_1:69885479-69885498 | None:intergenic | 50.0% | |
| ! | AGCCGTGGCTTGTCATACAA+GGG | - | chr1_1:69885513-69885532 | None:intergenic | 50.0% |
| TTATCGCTCCACTCCCCAAT+TGG | + | chr1_1:69885799-69885818 | Msa0039900:five_prime_UTR | 50.0% | |
| GACATATGCCAATTGGGGAG+TGG | - | chr1_1:69885810-69885829 | None:intergenic | 50.0% | |
| TGCTGTCTAAACCCAATCCG+AGG | - | chr1_1:69885960-69885979 | None:intergenic | 50.0% | |
| AAAAACCAACCAGGCCTGGT+TGG | - | chr1_1:69886133-69886152 | None:intergenic | 50.0% | |
| GCGCTTAAGTACAGCTCAAC+AGG | - | chr1_1:69886335-69886354 | None:intergenic | 50.0% | |
| !! | GAGCTGTACTTAAGCGCTGA+TGG | + | chr1_1:69886338-69886357 | Msa0039900:five_prime_UTR | 50.0% |
| !! | ATCCAGATGATGGGCGACAA+CGG | + | chr1_1:69886395-69886414 | Msa0039900:five_prime_UTR | 50.0% |
| GGTGACATTGGAGTTGCACT+TGG | - | chr1_1:69887031-69887050 | None:intergenic | 50.0% | |
| ! | CTTGTTGGGTTGCACTGAGA+GGG | + | chr1_1:69887062-69887081 | Msa0039900:intron | 50.0% |
| GTCCCACTAAAGTCTGGAAG+AGG | + | chr1_1:69887396-69887415 | Msa0039900:intron | 50.0% | |
| !! | CTAGGTTCTGGAAGTGGTCT+TGG | - | chr1_1:69888187-69888206 | None:intergenic | 50.0% |
| !! | ACACTTGTAGCAGGTACTGG+TGG | - | chr1_1:69888265-69888284 | None:intergenic | 50.0% |
| GCAACACTTGTAGCAGGTAC+TGG | - | chr1_1:69888268-69888287 | None:intergenic | 50.0% | |
| GTCACAGCAACACTTGTAGC+AGG | - | chr1_1:69888274-69888293 | None:intergenic | 50.0% | |
| GCTCCTTCTCCAATGCCATA+CGG | + | chr1_1:69888310-69888329 | Msa0039900:CDS | 50.0% | |
| ! | TTTTTGCACTACCGGAGCCA+GGG | - | chr1_1:69888342-69888361 | None:intergenic | 50.0% |
| !!! | TTTTTTGCACTACCGGAGCC+AGG | - | chr1_1:69888343-69888362 | None:intergenic | 50.0% |
| ACTTCAACTCCCATCTGCGA+TGG | - | chr1_1:69888441-69888460 | None:intergenic | 50.0% | |
| AGTGGGGAGTCACAGAGGAA+GGG | - | chr1_1:69885474-69885493 | None:intergenic | 55.0% | |
| ! | CAGCCGTGGCTTGTCATACA+AGG | - | chr1_1:69885514-69885533 | None:intergenic | 55.0% |
| GGCACACACTTCACGCTGAA+TGG | - | chr1_1:69886214-69886233 | None:intergenic | 55.0% | |
| AACCGTTGTCGCCCATCATC+TGG | - | chr1_1:69886400-69886419 | None:intergenic | 55.0% | |
| ! | TGGGCGACAACGGTTTTTGC+TGG | + | chr1_1:69886405-69886424 | Msa0039900:five_prime_UTR | 55.0% |
| CCTCTCAGTGCAACCCAACA+AGG | - | chr1_1:69887064-69887083 | None:intergenic | 55.0% | |
| ! | CCTTGTTGGGTTGCACTGAG+AGG | + | chr1_1:69887061-69887080 | Msa0039900:intron | 55.0% |
| !! | GCAGCACTAGGTTCTGGAAG+TGG | - | chr1_1:69888193-69888212 | None:intergenic | 55.0% |
| TAGTGCATGCACAGGTGGCT+GGG | - | chr1_1:69888242-69888261 | None:intergenic | 55.0% | |
| ! | ACTGGTGGTAGTGCATGCAC+AGG | - | chr1_1:69888250-69888269 | None:intergenic | 55.0% |
| ! | GGGGGTATACCGTATGGCAT+TGG | - | chr1_1:69888322-69888341 | None:intergenic | 55.0% |
| ATGCCATACGGTATACCCCC+TGG | + | chr1_1:69888322-69888341 | Msa0039900:CDS | 55.0% | |
| ! | TTTTGCACTACCGGAGCCAG+GGG | - | chr1_1:69888341-69888360 | None:intergenic | 55.0% |
| GAGTGGGGAGTCACAGAGGA+AGG | - | chr1_1:69885475-69885494 | None:intergenic | 60.0% | |
| GAGTGTAAGCCAACCAGGCC+TGG | + | chr1_1:69886121-69886140 | Msa0039900:five_prime_UTR | 60.0% | |
| GTAAGCCAACCAGGCCTGGT+TGG | + | chr1_1:69886125-69886144 | Msa0039900:five_prime_UTR | 60.0% | |
| ! | GGAAGCGCAGCACTAGGTTC+TGG | - | chr1_1:69888199-69888218 | None:intergenic | 60.0% |
| GAACCTAGTGCTGCGCTTCC+TGG | + | chr1_1:69888199-69888218 | Msa0039900:CDS | 60.0% | |
| TAGTGCTGCGCTTCCTGGTC+CGG | + | chr1_1:69888204-69888223 | Msa0039900:CDS | 60.0% | |
| AGTGCATGCACAGGTGGCTG+GGG | - | chr1_1:69888241-69888260 | None:intergenic | 60.0% | |
| GTAGTGCATGCACAGGTGGC+TGG | - | chr1_1:69888243-69888262 | None:intergenic | 60.0% | |
| ! | GGTGGTAGTGCATGCACAGG+TGG | - | chr1_1:69888247-69888266 | None:intergenic | 60.0% |
| ! | GAGCCAGGGGGTATACCGTA+TGG | - | chr1_1:69888328-69888347 | None:intergenic | 60.0% |
| TACGGTATACCCCCTGGCTC+CGG | + | chr1_1:69888328-69888347 | Msa0039900:CDS | 60.0% | |
| TTTGCACTACCGGAGCCAGG+GGG | - | chr1_1:69888340-69888359 | None:intergenic | 60.0% | |
| GCTTGCAGTGAGAGCAGCCG+TGG | - | chr1_1:69885528-69885547 | None:intergenic | 65.0% | |
| ! | GGACCAGGAAGCGCAGCACT+AGG | - | chr1_1:69888205-69888224 | None:intergenic | 65.0% |
| AGGTGGCTGGGGTTGAGTCG+AGG | - | chr1_1:69888230-69888249 | None:intergenic | 65.0% | |
| GGTTGAGTCGAGGCCGGACC+AGG | - | chr1_1:69888220-69888239 | None:intergenic | 70.0% | |
| GGCTGGGGTTGAGTCGAGGC+CGG | - | chr1_1:69888226-69888245 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 69885396 | 69888737 | 69885396 | ID=Msa0039900;Name=Msa0039900 |
| chr1_1 | mRNA | 69885396 | 69888737 | 69885396 | ID=Msa0039900-mRNA-1;Parent=Msa0039900;Name=Msa0039900-mRNA-1;_AED=0.29;_eAED=0.29;_QI=1172|1|1|1|1|1|4|332|123 |
| chr1_1 | exon | 69885396 | 69886472 | 69885396 | ID=Msa0039900-mRNA-1:exon:22874;Parent=Msa0039900-mRNA-1 |
| chr1_1 | exon | 69887279 | 69887375 | 69887279 | ID=Msa0039900-mRNA-1:exon:22875;Parent=Msa0039900-mRNA-1 |
| chr1_1 | exon | 69887620 | 69887698 | 69887620 | ID=Msa0039900-mRNA-1:exon:22876;Parent=Msa0039900-mRNA-1 |
| chr1_1 | exon | 69888115 | 69888737 | 69888115 | ID=Msa0039900-mRNA-1:exon:22877;Parent=Msa0039900-mRNA-1 |
| chr1_1 | five_prime_UTR | 69885396 | 69886472 | 69885396 | ID=Msa0039900-mRNA-1:five_prime_utr;Parent=Msa0039900-mRNA-1 |
| chr1_1 | five_prime_UTR | 69887279 | 69887373 | 69887279 | ID=Msa0039900-mRNA-1:five_prime_utr;Parent=Msa0039900-mRNA-1 |
| chr1_1 | CDS | 69887374 | 69887375 | 69887374 | ID=Msa0039900-mRNA-1:cds;Parent=Msa0039900-mRNA-1 |
| chr1_1 | CDS | 69887620 | 69887698 | 69887620 | ID=Msa0039900-mRNA-1:cds;Parent=Msa0039900-mRNA-1 |
| chr1_1 | CDS | 69888115 | 69888405 | 69888115 | ID=Msa0039900-mRNA-1:cds;Parent=Msa0039900-mRNA-1 |
| chr1_1 | three_prime_UTR | 69888406 | 69888737 | 69888406 | ID=Msa0039900-mRNA-1:three_prime_utr;Parent=Msa0039900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
