AlfalfaGEDB | Msa0690540

M. sativa cultivar zhongmu-4 / Msa0690540

KEGG: K01012
GO: GO:0003674 GO:0005488 GO:0008270 GO:0043167 GO:0043169 GO:0046872 GO:0046914
PFAM: PF04055.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0690540	XP_003607352.1	97.613	377	7	1	1	375	1	377	0.0	766

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0690540	sp\|P54967\|BIOB_ARATH	78.042	378	79	3	1	375	1	377	0.0	619

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0690540	G7JRL6	97.613	377	7	1	1	375	1	377	0.0	766

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0012940	Msa0690540	0.805691	1.181313e-49	-8.615850e-47
Msa0024400	Msa0690540	0.801974	6.988505e-49	-8.615850e-47
Msa0038000	Msa0690540	0.800012	1.759479e-48	-8.615850e-47
Msa0093010	Msa0690540	0.809148	2.183262e-50	-8.615850e-47
Msa0093850	Msa0690540	0.828487	8.747750e-55	-8.615850e-47
Msa0131590	Msa0690540	0.815906	7.269720e-52	-8.615850e-47
Msa0138360	Msa0690540	0.840249	9.741305e-58	-8.615850e-47
Msa0147980	Msa0690540	0.846400	2.223846e-59	-8.615850e-47
Msa0163510	Msa0690540	0.803890	2.808918e-49	-8.615850e-47
Msa0166460	Msa0690540	0.820939	5.261225e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0690540	MtrunA17_Chr4g0039201	97.613	377	7	1	1	375	1	377	0.0	766

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0690540	AT2G43360.1	78.042	378	79	3	1	375	1	377	0.0	619

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Find 108 sgRNAs with CRISPR-Local

Find 450 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGAATTATAATGCTGTA+AGG	0.507216	4_4:+58389703	None:intergenic
AACCCCTCTTCAGGATCAGA+AGG	0.584376	4_4:-58384780	Msa0690540:intron
AAGAAGAAGAAATCATGTTT+TGG	0.330494	4_4:-58389769	Msa0690540:exon
AAGAATGGGAGAATCATAGA+TGG	0.458283	4_4:+58389595	None:intergenic
AAGTCCTGTATCATATCTAG+AGG	0.624831	4_4:+58389246	None:intergenic
AATATGGCCCCAGAAACGAT+TGG	0.630760	4_4:-58389637	Msa0690540:CDS
AATGCACTTATTGCTGTAAA+GGG	0.397169	4_4:-58384803	Msa0690540:CDS
AATGTATCTGAAGTTATCAG+GGG	0.697966	4_4:+58383930	None:intergenic
ACAATCAAGATCTTCAATTT+GGG	0.353418	4_4:-58389726	Msa0690540:CDS
ACAATGTATCTGAAGTTATC+AGG	0.236404	4_4:+58383928	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAATCACGAAGTGAAGTAAA+GGG	+	chr4_4:58383846-58383865	None:intergenic	30.0%
TTAATCACGAAGTGAAGTAA+AGG	+	chr4_4:58383847-58383866	None:intergenic	30.0%
ACTTCGTGATTAACTACTAT+TGG	-	chr4_4:58383854-58383873	Msa0690540:three_prime_UTR	30.0%
CACAATCAAGATCTTCAATT+TGG	-	chr4_4:58384009-58384028	Msa0690540:exon	30.0%
TGAAAGAGAAGATCAAGAAT+GGG	+	chr4_4:58384158-58384177	None:intergenic	30.0%
ATGAAAGAGAAGATCAAGAA+TGG	+	chr4_4:58384159-58384178	None:intergenic	30.0%
ATTCTTGATCTTCTCTTTCA+TGG	-	chr4_4:58384158-58384177	Msa0690540:CDS	30.0%
TTCTTGATCTTCTCTTTCAT+GGG	-	chr4_4:58384159-58384178	Msa0690540:CDS	30.0%
AAACACCTCATTTCCTTAAT+GGG	+	chr4_4:58384278-58384297	None:intergenic	30.0%
AAAACACCTCATTTCCTTAA+TGG	+	chr4_4:58384279-58384298	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	58383806	58389952	58383806	ID=Msa0690540;Name=Msa0690540
chr4_4	mRNA	58383806	58389952	58383806	ID=Msa0690540-mRNA-1;Parent=Msa0690540;Name=Msa0690540-mRNA-1;_AED=0.05;_eAED=0.05;_QI=152\|0.83\|0.85\|1\|0.5\|0.57\|7\|210\|375
chr4_4	exon	58383806	58384315	58383806	ID=Msa0690540-mRNA-1:exon:15709;Parent=Msa0690540-mRNA-1
chr4_4	exon	58384781	58384920	58384781	ID=Msa0690540-mRNA-1:exon:15708;Parent=Msa0690540-mRNA-1
chr4_4	exon	58387845	58388050	58387845	ID=Msa0690540-mRNA-1:exon:15707;Parent=Msa0690540-mRNA-1
chr4_4	exon	58388263	58388369	58388263	ID=Msa0690540-mRNA-1:exon:15706;Parent=Msa0690540-mRNA-1
chr4_4	exon	58389195	58389368	58389195	ID=Msa0690540-mRNA-1:exon:15705;Parent=Msa0690540-mRNA-1
chr4_4	exon	58389577	58389818	58389577	ID=Msa0690540-mRNA-1:exon:15704;Parent=Msa0690540-mRNA-1
chr4_4	exon	58389842	58389952	58389842	ID=Msa0690540-mRNA-1:exon:15703;Parent=Msa0690540-mRNA-1
chr4_4	five_prime_UTR	58389842	58389952	58389842	ID=Msa0690540-mRNA-1:five_prime_utr;Parent=Msa0690540-mRNA-1
chr4_4	five_prime_UTR	58389778	58389818	58389778	ID=Msa0690540-mRNA-1:five_prime_utr;Parent=Msa0690540-mRNA-1
chr4_4	CDS	58389577	58389777	58389577	ID=Msa0690540-mRNA-1:cds;Parent=Msa0690540-mRNA-1
chr4_4	CDS	58389195	58389368	58389195	ID=Msa0690540-mRNA-1:cds;Parent=Msa0690540-mRNA-1
chr4_4	CDS	58388263	58388369	58388263	ID=Msa0690540-mRNA-1:cds;Parent=Msa0690540-mRNA-1
chr4_4	CDS	58387845	58388050	58387845	ID=Msa0690540-mRNA-1:cds;Parent=Msa0690540-mRNA-1
chr4_4	CDS	58384781	58384920	58384781	ID=Msa0690540-mRNA-1:cds;Parent=Msa0690540-mRNA-1
chr4_4	CDS	58384016	58384315	58384016	ID=Msa0690540-mRNA-1:cds;Parent=Msa0690540-mRNA-1
chr4_4	three_prime_UTR	58383806	58384015	58383806	ID=Msa0690540-mRNA-1:three_prime_utr;Parent=Msa0690540-mRNA-1

Gene Sequence

>Msa0690540

ATGTTTTGGTTGAGACCCATTTTGCGTTCACAATCAAGATCTTCAATTTGGGCCTTACAGCATTATAATTCCTTTTCAACTTCATCAGCAGCTGCAATTCAAGCTGAAAAAACCATAAAATATGGCCCCAGAAACGATTGGACCAAAGAGGAAGTCAAATCCATCTATGATTCTCCCATTCTTGATCTTCTCTTTCATGGGGTTCATAGACATGCTCATAACTTTAGGGAAGTGCAACAGTGTACTCTTCTATCTGTGAAAACTGGGGGGTGTAGTGAGGATTGTTCTTATTGCCCTCAATCCTCTAGATATGATACAGGACTTAAAGGTCAAAAGCTTTTGAACAAGGATGCTGTTCTTCAGGCCGCAGTCAAGGCTAAAGAGGCTGGGAGTACTCGCTTTTGCATGGGCGCTGCATGGAGGGATACGATAGGAAGAAAGACCAACTTCAAGCAGATACTTGAATATGTCAAAGAAATAAAGGGTATGGGGATGGAGGTGTGTTGCACCCTTGGCATGCTGGATAAAGATCAGGCTGGTGAGCTCAAGAAGGCAGGTCTTACTGCATACAATCACAATCTTGACACTTCAAGGGAATACTATCCAAACATCATCACAACAAGGACTTACGATGAGCGCCTAAAAACTCTCGAGTTTGTTCGTGATGCAGGGATTAATGTTTGTAGTGGTGGAATTATCGGGCTTGGAGAAGCAGAGGAAGACCGTGTAGGTTTGTTACATACATTATCAACACTTCCTACACATCCAGAGAGTGTTCCCATTAATGCACTTATTGCTGTAAAGGGAACCCCTCTTCAGGATCAGAAGCCTGTTGAAATATGGGAGATGATCCGCATGATTGCAACGGCACGTATCACAATGCCAAAAGCAATGGTCAGGTTATCTGCCGGCAGAGTTCGGTTCTCCGTGCCTGAGCAGGCATTGTGCTTTCTAGCTGGTGCCAATTCTATCTTTGCTGGTGAAAAGCTTCTTACCACTGCTAACAATGATTTTGATGCTGATCAACTCATGTTTAAAGTTCTTGGTTTGCTTCCAAAAGCTCCAAGCTTGGATGATGATGAAACTAATGAGGCAGAGAACTATAAAGAAGCTGCTTCTTCTAGTTAG

Protein sequence

>Msa0690540

MFWLRPILRSQSRSSIWALQHYNSFSTSSAAAIQAEKTIKYGPRNDWTKEEVKSIYDSPILDLLFHGVHRHAHNFREVQQCTLLSVKTGGCSEDCSYCPQSSRYDTGLKGQKLLNKDAVLQAAVKAKEAGSTRFCMGAAWRDTIGRKTNFKQILEYVKEIKGMGMEVCCTLGMLDKDQAGELKKAGLTAYNHNLDTSREYYPNIITTRTYDERLKTLEFVRDAGINVCSGGIIGLGEAEEDRVGLLHTLSTLPTHPESVPINALIAVKGTPLQDQKPVEIWEMIRMIATARITMPKAMVRLSAGRVRFSVPEQALCFLAGANSIFAGEKLLTTANNDFDADQLMFKVLGLLPKAPSLDDDETNEAENYKEAASSS*