Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1423370 | A0A072U0E6 | 100.000 | 95 | 0 | 0 | 1 | 95 | 1 | 95 | 1.57e-59 | 192 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032920 | Msa1423370 | -0.801814 | 7.537795e-49 | -8.615850e-47 |
| Msa1423350 | Msa1423370 | 0.822486 | 2.308227e-53 | -8.615850e-47 |
| Msa1423370 | Msa1425880 | 0.802124 | 6.511800e-49 | -8.615850e-47 |
| Msa0625720 | Msa1423370 | 0.805886 | 1.075059e-49 | -8.615850e-47 |
| Msa0124060 | Msa1423370 | 0.807446 | 5.035526e-50 | -8.615850e-47 |
| Msa0136100 | Msa1423370 | 0.807919 | 3.994917e-50 | -8.615850e-47 |
| Msa1245930 | Msa1423370 | 0.803262 | 3.792097e-49 | -8.615850e-47 |
| Msa1259060 | Msa1423370 | 0.801472 | 8.862568e-49 | -8.615850e-47 |
| Msa1297230 | Msa1423370 | 0.811795 | 5.855477e-51 | -8.615850e-47 |
| Msa1320410 | Msa1423370 | 0.800626 | 1.319418e-48 | -8.615850e-47 |
| Msa0378720 | Msa1423370 | 0.802449 | 5.580573e-49 | -8.615850e-47 |
| Msa0406770 | Msa1423370 | 0.800914 | 1.152683e-48 | -8.615850e-47 |
| Msa0479170 | Msa1423370 | 0.810207 | 1.293020e-50 | -8.615850e-47 |
| Msa0279220 | Msa1423370 | 0.806479 | 8.062315e-50 | -8.615850e-47 |
| Msa1208880 | Msa1423370 | 0.810739 | 9.921837e-51 | -8.615850e-47 |
| Msa0529890 | Msa1423370 | 0.803037 | 4.220100e-49 | -8.615850e-47 |
| Msa0585560 | Msa1423370 | 0.802613 | 5.161921e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1423370 | MtrunA17_Chr7g0235621 | 100.000 | 95 | 0 | 0 | 1 | 95 | 1 | 95 | 3.03e-63 | 192 |
| Msa1423370 | MtrunA17_Chr2g0288831 | 50.000 | 96 | 46 | 2 | 1 | 95 | 1 | 95 | 1.98e-22 | 87.8 |
| Msa1423370 | MtrunA17_Chr4g0024941 | 43.158 | 95 | 53 | 1 | 1 | 95 | 1 | 94 | 5.16e-19 | 79.0 |
| Msa1423370 | MtrunA17_Chr5g0444571 | 37.895 | 95 | 58 | 1 | 1 | 95 | 1 | 94 | 3.04e-15 | 66.2 |
| Msa1423370 | MtrunA17_Chr5g0444551 | 37.895 | 95 | 58 | 1 | 1 | 95 | 1 | 94 | 5.30e-15 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1423370 | AT5G48660.1 | 82.105 | 95 | 17 | 0 | 1 | 95 | 1 | 95 | 4.27e-51 | 161 |
| Msa1423370 | AT3G07190.1 | 81.053 | 95 | 18 | 0 | 1 | 95 | 1 | 95 | 1.36e-50 | 160 |
| Msa1423370 | AT5G42570.1 | 47.368 | 95 | 49 | 1 | 1 | 95 | 1 | 94 | 1.81e-21 | 85.5 |
| Msa1423370 | AT1G11905.2 | 36.458 | 96 | 60 | 1 | 1 | 96 | 1 | 95 | 3.85e-14 | 66.2 |
| Msa1423370 | AT1G11905.1 | 35.789 | 95 | 60 | 1 | 1 | 95 | 1 | 94 | 2.10e-13 | 64.3 |
| Msa1423370 | AT3G20450.1 | 37.113 | 97 | 57 | 3 | 1 | 95 | 5 | 99 | 3.21e-12 | 59.7 |
Find 24 sgRNAs with CRISPR-Local
Find 248 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGCTTAGCACCTTTGTTC+TGG | 0.274823 | tig0025528:+67311 | None:intergenic |
| TTCATCACAAGATCCCTTAA+TGG | 0.289583 | tig0025528:+67439 | None:intergenic |
| TGGTAAAGATAGGTCCATTA+AGG | 0.319406 | tig0025528:-67453 | Msa1423370:CDS |
| GGATCTTGTGATGAAGAGTT+TGG | 0.371144 | tig0025528:-67431 | Msa1423370:CDS |
| GATTATTGCTGAAGGTGTTA+TGG | 0.376307 | tig0025528:-67488 | Msa1423370:CDS |
| TTGCTTGAAGCTTATCTCCT+TGG | 0.381860 | tig0025528:-67247 | Msa1423370:intron |
| TTTCTTATGATGGTAAAGAT+AGG | 0.402027 | tig0025528:-67463 | Msa1423370:CDS |
| ATTCACCTCATTGCCAAGTT+GGG | 0.427150 | tig0025528:+66070 | None:intergenic |
| CATTCACCTCATTGCCAAGT+TGG | 0.437043 | tig0025528:+66069 | None:intergenic |
| GGCTTTAGCTCATCAGAGTA+AGG | 0.444494 | tig0025528:+66044 | None:intergenic |
| CACCTATGGATCAAGTTCTC+TGG | 0.452114 | tig0025528:-67279 | Msa1423370:CDS |
| AAGAATATAACTTCAACAAA+GGG | 0.484746 | tig0025528:-66011 | Msa1423370:CDS |
| GCTTGGTACTATGTCACCTA+TGG | 0.487529 | tig0025528:-67293 | Msa1423370:CDS |
| CAAGAATATAACTTCAACAA+AGG | 0.495560 | tig0025528:-66012 | Msa1423370:CDS |
| GTTATATTCTTGATAGAGCT+AGG | 0.498115 | tig0025528:+66023 | None:intergenic |
| GAGTTTGGATCAACTCAAGA+TGG | 0.503014 | tig0025528:-67416 | Msa1423370:CDS |
| GGTAAAGATAGGTCCATTAA+GGG | 0.516157 | tig0025528:-67452 | Msa1423370:CDS |
| CAGAACAAAGGTGCTAAGCT+TGG | 0.534297 | tig0025528:-67310 | Msa1423370:CDS |
| AGTTTGGATCAACTCAAGAT+GGG | 0.564964 | tig0025528:-67415 | Msa1423370:CDS |
| CTCCAGAGAACTTGATCCAT+AGG | 0.565099 | tig0025528:+67277 | None:intergenic |
| AGTATCCCAACTTGGCAATG+AGG | 0.617466 | tig0025528:-66075 | Msa1423370:CDS |
| TCTGGTGTAGTATCCCAACT+TGG | 0.630368 | tig0025528:-66083 | Msa1423370:intron |
| GTTTGGATCAACTCAAGATG+GGG | 0.639842 | tig0025528:-67414 | Msa1423370:CDS |
| CTTGTTAAGATCCAGAACAA+AGG | 0.651048 | tig0025528:-67322 | Msa1423370:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAAATTCAGATAAATAA+AGG | + | tig0025528:66808-66827 | None:intergenic | 10.0% |
| !! | TAATAAATTCAGATAAATAA+AGG | + | tig0025528:66808-66827 | None:intergenic | 10.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | tig0025528:67238-67257 | Msa1423370:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | tig0025528:67238-67257 | Msa1423370:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | tig0025528:67238-67257 | Msa1423370:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | tig0025528:67238-67257 | Msa1423370:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | tig0025528:67238-67257 | Msa1423370:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | tig0025528:67238-67257 | Msa1423370:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | tig0025528:67238-67257 | Msa1423370:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | tig0025528:67238-67257 | Msa1423370:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | tig0025528:67238-67257 | Msa1423370:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | tig0025528:67238-67257 | Msa1423370:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | tig0025528:67238-67257 | Msa1423370:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | tig0025528:67238-67257 | Msa1423370:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | tig0025528:67238-67257 | Msa1423370:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | tig0025528:67238-67257 | Msa1423370:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | tig0025528:67238-67257 | Msa1423370:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | tig0025528:67238-67257 | Msa1423370:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | tig0025528:67238-67257 | Msa1423370:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | tig0025528:67238-67257 | Msa1423370:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | tig0025528:67238-67257 | Msa1423370:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | tig0025528:67238-67257 | Msa1423370:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | tig0025528:67238-67257 | Msa1423370:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | tig0025528:67238-67257 | Msa1423370:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | tig0025528:67238-67257 | Msa1423370:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | tig0025528:67238-67257 | Msa1423370:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | tig0025528:67238-67257 | Msa1423370:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | tig0025528:67238-67257 | Msa1423370:intron | 100.0% |
| !! | AATCAAATAACAAAGATAAA+AGG | + | tig0025528:66306-66325 | None:intergenic | 15.0% |
| !!! | AGATTTATTTATGTTTTGTT+TGG | - | tig0025528:66340-66359 | Msa1423370:intron | 15.0% |
| !!! | AATTTTCAATTTGTTAAGTT+AGG | - | tig0025528:66530-66549 | Msa1423370:intron | 15.0% |
| !! | AATCAAATAACAAAGATAAA+AGG | + | tig0025528:66306-66325 | None:intergenic | 15.0% |
| !!! | AGATTTATTTATGTTTTGTT+TGG | - | tig0025528:66340-66359 | Msa1423370:intron | 15.0% |
| !!! | AATTTTCAATTTGTTAAGTT+AGG | - | tig0025528:66530-66549 | Msa1423370:intron | 15.0% |
| !!! | AATTTTCAAGTTGTTAAGTT+AGG | - | tig0025528:66374-66393 | Msa1423370:intron | 20.0% |
| !!! | TTAAGTTAGGTTAATTTTAC+AGG | - | tig0025528:66387-66406 | Msa1423370:intron | 20.0% |
| !!! | AAAAAGTGAGATTTTTTTGT+AGG | - | tig0025528:66414-66433 | Msa1423370:intron | 20.0% |
| !!! | AAATTTCAAGTTGTTAAGTT+AGG | - | tig0025528:66472-66491 | Msa1423370:intron | 20.0% |
| !! | AAGAATATAACTTCAACAAA+GGG | - | tig0025528:67504-67523 | Msa1423370:CDS | 20.0% |
| !!! | AATTTTCAAGTTGTTAAGTT+AGG | - | tig0025528:66374-66393 | Msa1423370:intron | 20.0% |
| !!! | TTAAGTTAGGTTAATTTTAC+AGG | - | tig0025528:66387-66406 | Msa1423370:intron | 20.0% |
| !!! | AAAAAGTGAGATTTTTTTGT+AGG | - | tig0025528:66414-66433 | Msa1423370:intron | 20.0% |
| !!! | AAATTTCAAGTTGTTAAGTT+AGG | - | tig0025528:66472-66491 | Msa1423370:intron | 20.0% |
| !! | AAGAATATAACTTCAACAAA+GGG | - | tig0025528:67504-67523 | Msa1423370:CDS | 20.0% |
| ! | TTTCTTATGATGGTAAAGAT+AGG | - | tig0025528:66052-66071 | Msa1423370:CDS | 25.0% |
| ! | TTCTCTTATGTTGTTAAGTT+AGG | - | tig0025528:66447-66466 | Msa1423370:intron | 25.0% |
| ! | TACTCTTATGTTGTTATGTT+AGG | - | tig0025528:66505-66524 | Msa1423370:intron | 25.0% |
| !! | TCAAGTTAGGTTAATTTTCA+AGG | - | tig0025528:66576-66595 | Msa1423370:intron | 25.0% |
| !! | CAAGTTAGGTTAATTTTCAA+GGG | - | tig0025528:66577-66596 | Msa1423370:intron | 25.0% |
| ! | TAGAAAGAAGAATTAATGTG+TGG | - | tig0025528:66601-66620 | Msa1423370:intron | 25.0% |
| ! | AATTAGAAACTCTAACATAC+CGG | - | tig0025528:66711-66730 | Msa1423370:intron | 25.0% |
| ! | TTATCTGTTCGAAATTATCA+TGG | - | tig0025528:66980-66999 | Msa1423370:intron | 25.0% |
| ! | TTAGATTCAGATTGATATCT+AGG | + | tig0025528:67209-67228 | None:intergenic | 25.0% |
| !!! | AAAATTTCTAGAATGAAGGA+TGG | + | tig0025528:67287-67306 | None:intergenic | 25.0% |
| !!! | GATCAAAATTTCTAGAATGA+AGG | + | tig0025528:67291-67310 | None:intergenic | 25.0% |
| !! | TGATATATGTTTCTGTATTC+TGG | - | tig0025528:67414-67433 | Msa1423370:CDS | 25.0% |
| ! | CAAGAATATAACTTCAACAA+AGG | - | tig0025528:67503-67522 | Msa1423370:CDS | 25.0% |
| ! | TTTCTTATGATGGTAAAGAT+AGG | - | tig0025528:66052-66071 | Msa1423370:CDS | 25.0% |
| ! | TTCTCTTATGTTGTTAAGTT+AGG | - | tig0025528:66447-66466 | Msa1423370:intron | 25.0% |
| ! | TACTCTTATGTTGTTATGTT+AGG | - | tig0025528:66505-66524 | Msa1423370:intron | 25.0% |
| !! | TCAAGTTAGGTTAATTTTCA+AGG | - | tig0025528:66576-66595 | Msa1423370:intron | 25.0% |
| !! | CAAGTTAGGTTAATTTTCAA+GGG | - | tig0025528:66577-66596 | Msa1423370:intron | 25.0% |
| ! | TAGAAAGAAGAATTAATGTG+TGG | - | tig0025528:66601-66620 | Msa1423370:intron | 25.0% |
| ! | AATTAGAAACTCTAACATAC+CGG | - | tig0025528:66711-66730 | Msa1423370:intron | 25.0% |
| ! | TTATCTGTTCGAAATTATCA+TGG | - | tig0025528:66980-66999 | Msa1423370:intron | 25.0% |
| ! | TTAGATTCAGATTGATATCT+AGG | + | tig0025528:67209-67228 | None:intergenic | 25.0% |
| !!! | AAAATTTCTAGAATGAAGGA+TGG | + | tig0025528:67287-67306 | None:intergenic | 25.0% |
| !!! | GATCAAAATTTCTAGAATGA+AGG | + | tig0025528:67291-67310 | None:intergenic | 25.0% |
| !! | TGATATATGTTTCTGTATTC+TGG | - | tig0025528:67414-67433 | Msa1423370:CDS | 25.0% |
| ! | CAAGAATATAACTTCAACAA+AGG | - | tig0025528:67503-67522 | Msa1423370:CDS | 25.0% |
| !! | TTTTTGGTGATTATTGCTGA+AGG | - | tig0025528:66019-66038 | Msa1423370:CDS | 30.0% |
| ! | TGTTATGGCTTTTCTTATGA+TGG | - | tig0025528:66042-66061 | Msa1423370:CDS | 30.0% |
| !!! | CAATTATTTTGAGAGCTATG+AGG | + | tig0025528:67087-67106 | None:intergenic | 30.0% |
| TGAAAGAAAACAACTCTGAT+GGG | - | tig0025528:67177-67196 | Msa1423370:intron | 30.0% | |
| GAGCTTAACAAGTTCAAAAT+CGG | + | tig0025528:67337-67356 | None:intergenic | 30.0% | |
| TTGGACAAATTCGTAAGTAT+AGG | + | tig0025528:67383-67402 | None:intergenic | 30.0% | |
| ATATATCACAGCGGTATTAT+TGG | + | tig0025528:67402-67421 | None:intergenic | 30.0% | |
| TACAGAAACATATATCACAG+CGG | + | tig0025528:67411-67430 | None:intergenic | 30.0% | |
| GTTATATTCTTGATAGAGCT+AGG | + | tig0025528:67495-67514 | None:intergenic | 30.0% | |
| !! | TTTTTGGTGATTATTGCTGA+AGG | - | tig0025528:66019-66038 | Msa1423370:CDS | 30.0% |
| ! | TGTTATGGCTTTTCTTATGA+TGG | - | tig0025528:66042-66061 | Msa1423370:CDS | 30.0% |
| !!! | CAATTATTTTGAGAGCTATG+AGG | + | tig0025528:67087-67106 | None:intergenic | 30.0% |
| TGAAAGAAAACAACTCTGAT+GGG | - | tig0025528:67177-67196 | Msa1423370:intron | 30.0% | |
| GAGCTTAACAAGTTCAAAAT+CGG | + | tig0025528:67337-67356 | None:intergenic | 30.0% | |
| TTGGACAAATTCGTAAGTAT+AGG | + | tig0025528:67383-67402 | None:intergenic | 30.0% | |
| ATATATCACAGCGGTATTAT+TGG | + | tig0025528:67402-67421 | None:intergenic | 30.0% | |
| TACAGAAACATATATCACAG+CGG | + | tig0025528:67411-67430 | None:intergenic | 30.0% | |
| GTTATATTCTTGATAGAGCT+AGG | + | tig0025528:67495-67514 | None:intergenic | 30.0% | |
| !! | GATTATTGCTGAAGGTGTTA+TGG | - | tig0025528:66027-66046 | Msa1423370:CDS | 35.0% |
| TGGTAAAGATAGGTCCATTA+AGG | - | tig0025528:66062-66081 | Msa1423370:CDS | 35.0% | |
| GGTAAAGATAGGTCCATTAA+GGG | - | tig0025528:66063-66082 | Msa1423370:CDS | 35.0% | |
| TTCATCACAAGATCCCTTAA+TGG | + | tig0025528:66079-66098 | None:intergenic | 35.0% | |
| AGTTTGGATCAACTCAAGAT+GGG | - | tig0025528:66100-66119 | Msa1423370:intron | 35.0% | |
| ! | GCAATAGTTTTTACAGTAGC+TGG | + | tig0025528:66133-66152 | None:intergenic | 35.0% |
| GCTACTGTAAAAACTATTGC+TGG | - | tig0025528:66133-66152 | Msa1423370:intron | 35.0% | |
| CTTGTTAAGATCCAGAACAA+AGG | - | tig0025528:66193-66212 | Msa1423370:intron | 35.0% | |
| AAAGGAACATGAACATACCA+AGG | + | tig0025528:66288-66307 | None:intergenic | 35.0% | |
| TGCTCTTATGTTGTCAAGTT+AGG | - | tig0025528:66563-66582 | Msa1423370:intron | 35.0% | |
| AAGAAGAATTAATGTGTGGC+TGG | - | tig0025528:66605-66624 | Msa1423370:intron | 35.0% | |
| AAATGACATATGCTGTAAGC+GGG | + | tig0025528:66785-66804 | None:intergenic | 35.0% | |
| GAAATGACATATGCTGTAAG+CGG | + | tig0025528:66786-66805 | None:intergenic | 35.0% | |
| AATTGTAAATCTGCCAGCTT+TGG | - | tig0025528:66896-66915 | Msa1423370:intron | 35.0% | |
| AAAAAACCAAACACCAAAGC+TGG | + | tig0025528:66912-66931 | None:intergenic | 35.0% | |
| !! | TCGTTCAGGTATTGCATTTT+GGG | + | tig0025528:67036-67055 | None:intergenic | 35.0% |
| !! | ATCGTTCAGGTATTGCATTT+TGG | + | tig0025528:67037-67056 | None:intergenic | 35.0% |
| GTTTCATTGCAAACTTCCAA+TGG | + | tig0025528:67141-67160 | None:intergenic | 35.0% | |
| AAGTTTGCAATGAAACCAAC+AGG | - | tig0025528:67145-67164 | Msa1423370:intron | 35.0% | |
| !! | GTTGTTTTCTTTCACCTCAT+TGG | + | tig0025528:67171-67190 | None:intergenic | 35.0% |
| GTGAAAGAAAACAACTCTGA+TGG | - | tig0025528:67176-67195 | Msa1423370:intron | 35.0% | |
| ATCTGAATCTAACTCCAATG+AGG | - | tig0025528:67217-67236 | Msa1423370:intron | 35.0% | |
| TCTGAATCTAACTCCAATGA+GGG | - | tig0025528:67218-67237 | Msa1423370:intron | 35.0% | |
| !! | ATTTCTAGAATGAAGGATGG+AGG | + | tig0025528:67284-67303 | None:intergenic | 35.0% |
| ATCCCTGTACATTAGCAATT+TGG | - | tig0025528:67308-67327 | Msa1423370:CDS | 35.0% | |
| CTTAACAAGTTCAAAATCGG+TGG | + | tig0025528:67334-67353 | None:intergenic | 35.0% | |
| !! | GATTATTGCTGAAGGTGTTA+TGG | - | tig0025528:66027-66046 | Msa1423370:CDS | 35.0% |
| TGGTAAAGATAGGTCCATTA+AGG | - | tig0025528:66062-66081 | Msa1423370:CDS | 35.0% | |
| GGTAAAGATAGGTCCATTAA+GGG | - | tig0025528:66063-66082 | Msa1423370:CDS | 35.0% | |
| TTCATCACAAGATCCCTTAA+TGG | + | tig0025528:66079-66098 | None:intergenic | 35.0% | |
| AGTTTGGATCAACTCAAGAT+GGG | - | tig0025528:66100-66119 | Msa1423370:intron | 35.0% | |
| ! | GCAATAGTTTTTACAGTAGC+TGG | + | tig0025528:66133-66152 | None:intergenic | 35.0% |
| GCTACTGTAAAAACTATTGC+TGG | - | tig0025528:66133-66152 | Msa1423370:intron | 35.0% | |
| CTTGTTAAGATCCAGAACAA+AGG | - | tig0025528:66193-66212 | Msa1423370:intron | 35.0% | |
| AAAGGAACATGAACATACCA+AGG | + | tig0025528:66288-66307 | None:intergenic | 35.0% | |
| TGCTCTTATGTTGTCAAGTT+AGG | - | tig0025528:66563-66582 | Msa1423370:intron | 35.0% | |
| AAGAAGAATTAATGTGTGGC+TGG | - | tig0025528:66605-66624 | Msa1423370:intron | 35.0% | |
| AAATGACATATGCTGTAAGC+GGG | + | tig0025528:66785-66804 | None:intergenic | 35.0% | |
| GAAATGACATATGCTGTAAG+CGG | + | tig0025528:66786-66805 | None:intergenic | 35.0% | |
| AATTGTAAATCTGCCAGCTT+TGG | - | tig0025528:66896-66915 | Msa1423370:intron | 35.0% | |
| AAAAAACCAAACACCAAAGC+TGG | + | tig0025528:66912-66931 | None:intergenic | 35.0% | |
| !! | TCGTTCAGGTATTGCATTTT+GGG | + | tig0025528:67036-67055 | None:intergenic | 35.0% |
| !! | ATCGTTCAGGTATTGCATTT+TGG | + | tig0025528:67037-67056 | None:intergenic | 35.0% |
| GTTTCATTGCAAACTTCCAA+TGG | + | tig0025528:67141-67160 | None:intergenic | 35.0% | |
| AAGTTTGCAATGAAACCAAC+AGG | - | tig0025528:67145-67164 | Msa1423370:intron | 35.0% | |
| !! | GTTGTTTTCTTTCACCTCAT+TGG | + | tig0025528:67171-67190 | None:intergenic | 35.0% |
| GTGAAAGAAAACAACTCTGA+TGG | - | tig0025528:67176-67195 | Msa1423370:intron | 35.0% | |
| ATCTGAATCTAACTCCAATG+AGG | - | tig0025528:67217-67236 | Msa1423370:intron | 35.0% | |
| TCTGAATCTAACTCCAATGA+GGG | - | tig0025528:67218-67237 | Msa1423370:intron | 35.0% | |
| !! | ATTTCTAGAATGAAGGATGG+AGG | + | tig0025528:67284-67303 | None:intergenic | 35.0% |
| ATCCCTGTACATTAGCAATT+TGG | - | tig0025528:67308-67327 | Msa1423370:CDS | 35.0% | |
| CTTAACAAGTTCAAAATCGG+TGG | + | tig0025528:67334-67353 | None:intergenic | 35.0% | |
| GGATCTTGTGATGAAGAGTT+TGG | - | tig0025528:66084-66103 | Msa1423370:intron | 40.0% | |
| GAGTTTGGATCAACTCAAGA+TGG | - | tig0025528:66099-66118 | Msa1423370:intron | 40.0% | |
| GTTTGGATCAACTCAAGATG+GGG | - | tig0025528:66101-66120 | Msa1423370:intron | 40.0% | |
| TTGCTTGAAGCTTATCTCCT+TGG | - | tig0025528:66268-66287 | Msa1423370:intron | 40.0% | |
| ATTATCATGGCTCACGACAA+TGG | - | tig0025528:66993-67012 | Msa1423370:intron | 40.0% | |
| AATGCAATACCTGAACGATG+AGG | - | tig0025528:67038-67057 | Msa1423370:intron | 40.0% | |
| CATTGCAAACTTCCAATGGT+GGG | + | tig0025528:67137-67156 | None:intergenic | 40.0% | |
| TCATTGCAAACTTCCAATGG+TGG | + | tig0025528:67138-67157 | None:intergenic | 40.0% | |
| CTGAATCTAACTCCAATGAG+GGG | - | tig0025528:67219-67238 | Msa1423370:intron | 40.0% | |
| TGAATCTAACTCCAATGAGG+GGG | - | tig0025528:67220-67239 | Msa1423370:intron | 40.0% | |
| GGCCAAATTGCTAATGTACA+GGG | + | tig0025528:67313-67332 | None:intergenic | 40.0% | |
| TGGCCAAATTGCTAATGTAC+AGG | + | tig0025528:67314-67333 | None:intergenic | 40.0% | |
| ATTCACCTCATTGCCAAGTT+GGG | + | tig0025528:67448-67467 | None:intergenic | 40.0% | |
| GGATCTTGTGATGAAGAGTT+TGG | - | tig0025528:66084-66103 | Msa1423370:intron | 40.0% | |
| GAGTTTGGATCAACTCAAGA+TGG | - | tig0025528:66099-66118 | Msa1423370:intron | 40.0% | |
| GTTTGGATCAACTCAAGATG+GGG | - | tig0025528:66101-66120 | Msa1423370:intron | 40.0% | |
| TTGCTTGAAGCTTATCTCCT+TGG | - | tig0025528:66268-66287 | Msa1423370:intron | 40.0% | |
| ATTATCATGGCTCACGACAA+TGG | - | tig0025528:66993-67012 | Msa1423370:intron | 40.0% | |
| AATGCAATACCTGAACGATG+AGG | - | tig0025528:67038-67057 | Msa1423370:intron | 40.0% | |
| CATTGCAAACTTCCAATGGT+GGG | + | tig0025528:67137-67156 | None:intergenic | 40.0% | |
| TCATTGCAAACTTCCAATGG+TGG | + | tig0025528:67138-67157 | None:intergenic | 40.0% | |
| CTGAATCTAACTCCAATGAG+GGG | - | tig0025528:67219-67238 | Msa1423370:intron | 40.0% | |
| TGAATCTAACTCCAATGAGG+GGG | - | tig0025528:67220-67239 | Msa1423370:intron | 40.0% | |
| GGCCAAATTGCTAATGTACA+GGG | + | tig0025528:67313-67332 | None:intergenic | 40.0% | |
| TGGCCAAATTGCTAATGTAC+AGG | + | tig0025528:67314-67333 | None:intergenic | 40.0% | |
| ATTCACCTCATTGCCAAGTT+GGG | + | tig0025528:67448-67467 | None:intergenic | 40.0% | |
| CAAGCTTAGCACCTTTGTTC+TGG | + | tig0025528:66207-66226 | None:intergenic | 45.0% | |
| !! | CAGAACAAAGGTGCTAAGCT+TGG | - | tig0025528:66205-66224 | Msa1423370:intron | 45.0% |
| GCTTGGTACTATGTCACCTA+TGG | - | tig0025528:66222-66241 | Msa1423370:intron | 45.0% | |
| CACCTATGGATCAAGTTCTC+TGG | - | tig0025528:66236-66255 | Msa1423370:intron | 45.0% | |
| CTCCAGAGAACTTGATCCAT+AGG | + | tig0025528:66241-66260 | None:intergenic | 45.0% | |
| !! | TCTAACATACCGGTCGCTTT+TGG | - | tig0025528:66721-66740 | Msa1423370:intron | 45.0% |
| !!! | CTAACATACCGGTCGCTTTT+GGG | - | tig0025528:66722-66741 | Msa1423370:intron | 45.0% |
| ACTTGATGTCGTATTTGCCG+CGG | - | tig0025528:66827-66846 | Msa1423370:intron | 45.0% | |
| !! | AATCTGCCAGCTTTGGTGTT+TGG | - | tig0025528:66903-66922 | Msa1423370:intron | 45.0% |
| TATATGAGCAGACCCACCAT+TGG | - | tig0025528:67122-67141 | Msa1423370:intron | 45.0% | |
| ATGAAACCAACAGGCCAATG+AGG | - | tig0025528:67154-67173 | Msa1423370:intron | 45.0% | |
| GAATCTAACTCCAATGAGGG+GGG | - | tig0025528:67221-67240 | Msa1423370:intron | 45.0% | |
| AATCTAACTCCAATGAGGGG+GGG | - | tig0025528:67222-67241 | Msa1423370:intron | 45.0% | |
| TCTGGTGTAGTATCCCAACT+TGG | - | tig0025528:67432-67451 | Msa1423370:CDS | 45.0% | |
| AGTATCCCAACTTGGCAATG+AGG | - | tig0025528:67440-67459 | Msa1423370:CDS | 45.0% | |
| CATTCACCTCATTGCCAAGT+TGG | + | tig0025528:67449-67468 | None:intergenic | 45.0% | |
| ! | GGCTTTAGCTCATCAGAGTA+AGG | + | tig0025528:67474-67493 | None:intergenic | 45.0% |
| CAAGCTTAGCACCTTTGTTC+TGG | + | tig0025528:66207-66226 | None:intergenic | 45.0% | |
| !! | CAGAACAAAGGTGCTAAGCT+TGG | - | tig0025528:66205-66224 | Msa1423370:intron | 45.0% |
| GCTTGGTACTATGTCACCTA+TGG | - | tig0025528:66222-66241 | Msa1423370:intron | 45.0% | |
| CACCTATGGATCAAGTTCTC+TGG | - | tig0025528:66236-66255 | Msa1423370:intron | 45.0% | |
| CTCCAGAGAACTTGATCCAT+AGG | + | tig0025528:66241-66260 | None:intergenic | 45.0% | |
| !! | TCTAACATACCGGTCGCTTT+TGG | - | tig0025528:66721-66740 | Msa1423370:intron | 45.0% |
| !!! | CTAACATACCGGTCGCTTTT+GGG | - | tig0025528:66722-66741 | Msa1423370:intron | 45.0% |
| ACTTGATGTCGTATTTGCCG+CGG | - | tig0025528:66827-66846 | Msa1423370:intron | 45.0% | |
| !! | AATCTGCCAGCTTTGGTGTT+TGG | - | tig0025528:66903-66922 | Msa1423370:intron | 45.0% |
| TATATGAGCAGACCCACCAT+TGG | - | tig0025528:67122-67141 | Msa1423370:intron | 45.0% | |
| ATGAAACCAACAGGCCAATG+AGG | - | tig0025528:67154-67173 | Msa1423370:intron | 45.0% | |
| GAATCTAACTCCAATGAGGG+GGG | - | tig0025528:67221-67240 | Msa1423370:intron | 45.0% | |
| AATCTAACTCCAATGAGGGG+GGG | - | tig0025528:67222-67241 | Msa1423370:intron | 45.0% | |
| TCTGGTGTAGTATCCCAACT+TGG | - | tig0025528:67432-67451 | Msa1423370:CDS | 45.0% | |
| AGTATCCCAACTTGGCAATG+AGG | - | tig0025528:67440-67459 | Msa1423370:CDS | 45.0% | |
| CATTCACCTCATTGCCAAGT+TGG | + | tig0025528:67449-67468 | None:intergenic | 45.0% | |
| ! | GGCTTTAGCTCATCAGAGTA+AGG | + | tig0025528:67474-67493 | None:intergenic | 45.0% |
| !!! | ATACCGGTCGCTTTTGGGAA+TGG | - | tig0025528:66727-66746 | Msa1423370:intron | 50.0% |
| TGTCCATTCCCAAAAGCGAC+CGG | + | tig0025528:66733-66752 | None:intergenic | 50.0% | |
| GCATATACAATGCCAGTCCG+CGG | + | tig0025528:66847-66866 | None:intergenic | 50.0% | |
| ! | CTTTCACCTCATTGGCCTGT+TGG | + | tig0025528:67163-67182 | None:intergenic | 50.0% |
| ATCTAACTCCAATGAGGGGG+GGG | - | tig0025528:67223-67242 | Msa1423370:intron | 50.0% | |
| !!! | ATACCGGTCGCTTTTGGGAA+TGG | - | tig0025528:66727-66746 | Msa1423370:intron | 50.0% |
| TGTCCATTCCCAAAAGCGAC+CGG | + | tig0025528:66733-66752 | None:intergenic | 50.0% | |
| GCATATACAATGCCAGTCCG+CGG | + | tig0025528:66847-66866 | None:intergenic | 50.0% | |
| ! | CTTTCACCTCATTGGCCTGT+TGG | + | tig0025528:67163-67182 | None:intergenic | 50.0% |
| ATCTAACTCCAATGAGGGGG+GGG | - | tig0025528:67223-67242 | Msa1423370:intron | 50.0% | |
| ATGTCGTATTTGCCGCGGAC+TGG | - | tig0025528:66832-66851 | Msa1423370:intron | 55.0% | |
| ACTACGCAGCCTCATCGTTC+AGG | + | tig0025528:67050-67069 | None:intergenic | 55.0% | |
| TCTAACTCCAATGAGGGGGG+GGG | - | tig0025528:67224-67243 | Msa1423370:intron | 55.0% | |
| !! | GAATGAAGGATGGAGGCACC+AGG | + | tig0025528:67277-67296 | None:intergenic | 55.0% |
| ATGTCGTATTTGCCGCGGAC+TGG | - | tig0025528:66832-66851 | Msa1423370:intron | 55.0% | |
| ACTACGCAGCCTCATCGTTC+AGG | + | tig0025528:67050-67069 | None:intergenic | 55.0% | |
| TCTAACTCCAATGAGGGGGG+GGG | - | tig0025528:67224-67243 | Msa1423370:intron | 55.0% | |
| !! | GAATGAAGGATGGAGGCACC+AGG | + | tig0025528:67277-67296 | None:intergenic | 55.0% |
| CTAACTCCAATGAGGGGGGG+GGG | - | tig0025528:67225-67244 | Msa1423370:intron | 60.0% | |
| TAACTCCAATGAGGGGGGGG+GGG | - | tig0025528:67226-67245 | Msa1423370:intron | 60.0% | |
| CTAACTCCAATGAGGGGGGG+GGG | - | tig0025528:67225-67244 | Msa1423370:intron | 60.0% | |
| TAACTCCAATGAGGGGGGGG+GGG | - | tig0025528:67226-67245 | Msa1423370:intron | 60.0% | |
| AACTCCAATGAGGGGGGGGG+GGG | - | tig0025528:67227-67246 | Msa1423370:intron | 65.0% | |
| AACTCCAATGAGGGGGGGGG+GGG | - | tig0025528:67227-67246 | Msa1423370:intron | 65.0% | |
| ACTCCAATGAGGGGGGGGGG+GGG | - | tig0025528:67228-67247 | Msa1423370:intron | 70.0% | |
| ACTCCAATGAGGGGGGGGGG+GGG | - | tig0025528:67228-67247 | Msa1423370:intron | 70.0% | |
| CTCCAATGAGGGGGGGGGGG+GGG | - | tig0025528:67229-67248 | Msa1423370:intron | 75.0% | |
| TCCAATGAGGGGGGGGGGGG+GGG | - | tig0025528:67230-67249 | Msa1423370:intron | 75.0% | |
| CTCCAATGAGGGGGGGGGGG+GGG | - | tig0025528:67229-67248 | Msa1423370:intron | 75.0% | |
| TCCAATGAGGGGGGGGGGGG+GGG | - | tig0025528:67230-67249 | Msa1423370:intron | 75.0% | |
| ! | CCAATGAGGGGGGGGGGGGG+GGG | - | tig0025528:67231-67250 | Msa1423370:intron | 80.0% |
| ! | CAATGAGGGGGGGGGGGGGG+GGG | - | tig0025528:67232-67251 | Msa1423370:intron | 80.0% |
| ! | AATGAGGGGGGGGGGGGGGG+GGG | - | tig0025528:67233-67252 | Msa1423370:intron | 80.0% |
| ! | CCAATGAGGGGGGGGGGGGG+GGG | - | tig0025528:67231-67250 | Msa1423370:intron | 80.0% |
| ! | CAATGAGGGGGGGGGGGGGG+GGG | - | tig0025528:67232-67251 | Msa1423370:intron | 80.0% |
| ! | AATGAGGGGGGGGGGGGGGG+GGG | - | tig0025528:67233-67252 | Msa1423370:intron | 80.0% |
| ! | CCCCCCCCCCCCCCCCTCAT+TGG | + | tig0025528:67234-67253 | None:intergenic | 85.0% |
| ! | ATGAGGGGGGGGGGGGGGGG+GGG | - | tig0025528:67234-67253 | Msa1423370:intron | 85.0% |
| ! | CCCCCCCCCCCCCCCCTCAT+TGG | + | tig0025528:67234-67253 | None:intergenic | 85.0% |
| ! | ATGAGGGGGGGGGGGGGGGG+GGG | - | tig0025528:67234-67253 | Msa1423370:intron | 85.0% |
| ! | TGAGGGGGGGGGGGGGGGGG+GGG | - | tig0025528:67235-67254 | Msa1423370:intron | 90.0% |
| ! | TGAGGGGGGGGGGGGGGGGG+GGG | - | tig0025528:67235-67254 | Msa1423370:intron | 90.0% |
| ! | GAGGGGGGGGGGGGGGGGGG+GGG | - | tig0025528:67236-67255 | Msa1423370:intron | 95.0% |
| ! | AGGGGGGGGGGGGGGGGGGG+GGG | - | tig0025528:67237-67256 | Msa1423370:intron | 95.0% |
| ! | GGGGGGGGGGGGGGGGGACC+TGG | - | tig0025528:67256-67275 | Msa1423370:CDS | 95.0% |
| ! | GAGGGGGGGGGGGGGGGGGG+GGG | - | tig0025528:67236-67255 | Msa1423370:intron | 95.0% |
| ! | AGGGGGGGGGGGGGGGGGGG+GGG | - | tig0025528:67237-67256 | Msa1423370:intron | 95.0% |
| ! | GGGGGGGGGGGGGGGGGACC+TGG | - | tig0025528:67256-67275 | Msa1423370:CDS | 95.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0025528 | gene | 66004 | 67533 | 66004 | ID=Msa1423370;Name=Msa1423370 |
| tig0025528 | mRNA | 66004 | 67533 | 66004 | ID=Msa1423370-mRNA-1;Parent=Msa1423370;Name=Msa1423370-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0|0|0.5|1|1|2|0|125 |
| tig0025528 | exon | 67248 | 67533 | 67248 | ID=Msa1423370-mRNA-1:exon:3187;Parent=Msa1423370-mRNA-1 |
| tig0025528 | exon | 66004 | 66095 | 66004 | ID=Msa1423370-mRNA-1:exon:3186;Parent=Msa1423370-mRNA-1 |
| tig0025528 | CDS | 67248 | 67533 | 67248 | ID=Msa1423370-mRNA-1:cds;Parent=Msa1423370-mRNA-1 |
| tig0025528 | CDS | 66004 | 66095 | 66004 | ID=Msa1423370-mRNA-1:cds;Parent=Msa1423370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
