AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0136100


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0136100 MtrunA17_Chr1g0207261 93.141 277 3 3 1 277 1 261 0.0 497
Msa0136100 MtrunA17_Chr5g0393771 59.459 74 25 1 125 198 19 87 4.64e-18 79.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0136100 AT3G19650.1 32.372 312 151 9 7 277 10 302 2.97e-17 80.5

Find 97 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTTCCTTTCATTCCTTTC+TGG 0.052010 1_3:-67897602 None:intergenic
CCATCTCTTCTATATTTCTT+AGG 0.105254 1_3:-67895495 None:intergenic
CTTCTTTGGGATTAGGATTT+AGG 0.107492 1_3:-67895268 None:intergenic
TTCAAACTAAAGCCAATATT+TGG 0.198057 1_3:+67897927 Msa0136100:three_prime_UTR
ATCTGAATCGAATCCTTCTT+TGG 0.219588 1_3:-67895282 None:intergenic
ATCTGATCATCCTCATTCTT+TGG 0.243825 1_3:-67897872 None:intergenic
TGAGGAAAAGGCCAGCATTT+AGG 0.247990 1_3:+67897498 Msa0136100:CDS
TTTCTGGAGGGTGGCTAGTA+TGG 0.266311 1_3:-67897586 None:intergenic
TCGAATCCTTCTTTGGGATT+AGG 0.276855 1_3:-67895275 None:intergenic
TGAGAAATCACTGGCTAAAC+TGG 0.294321 1_3:+67897415 Msa0136100:CDS
GAGGAAAAGGCCAGCATTTA+GGG 0.296936 1_3:+67897499 Msa0136100:CDS
TATAAAGAAATCATGAAAAT+TGG 0.297933 1_3:-67898020 None:intergenic
TTCTCTGTTTGAGTCTTAAT+AGG 0.302168 1_3:-67897806 None:intergenic
CTTCCTAGGTTCTCGCTTGT+TGG 0.303209 1_3:-67897690 None:intergenic
ATAACAAGCTTACCAAATAT+TGG 0.306733 1_3:-67897939 None:intergenic
CATCTCTTCTATATTTCTTA+GGG 0.330904 1_3:-67895494 None:intergenic
AGAGGAAGAGACAAATTTAA+TGG 0.334230 1_3:+67897767 Msa0136100:CDS
TTTGACCTGTCTCCAACCTT+TGG 0.360011 1_3:-67897376 None:intergenic
AATATTTGGTAAGCTTGTTA+TGG 0.363167 1_3:+67897941 Msa0136100:three_prime_UTR
TCTGAATCGAATCCTTCTTT+GGG 0.370152 1_3:-67895281 None:intergenic
TAATATCACAATGATCGATT+TGG 0.373867 1_3:-67898094 None:intergenic
TCCTCTGCAATTCGCTTCTC+AGG 0.377354 1_3:-67897659 None:intergenic
GCTTCTCAGGTCTATCTAGA+TGG 0.381632 1_3:-67897646 None:intergenic
TCAGGTCTATCTAGATGGTT+AGG 0.410188 1_3:-67897641 None:intergenic
ATAGGTTAACAGGGTTATCC+AGG 0.411868 1_3:+67898187 Msa0136100:three_prime_UTR
TGATAATAAGAGCGAGATCT+TGG 0.413507 1_3:-67895600 None:intergenic
TCATGAAAATTGGTAATCTC+TGG 0.425387 1_3:-67898010 None:intergenic
AAGATCTCGCTCTTATTATC+AGG 0.426217 1_3:+67895602 Msa0136100:CDS
GATGAAAATCCATCCTTCCT+AGG 0.435435 1_3:-67897704 None:intergenic
TCTGTTGAGCACTTGAGCTC+TGG 0.435869 1_3:+67898148 Msa0136100:three_prime_UTR
GGGTTATCCCTAATGACAAC+GGG 0.439716 1_3:+67898208 Msa0136100:three_prime_UTR
TCCTTTCATTCCTTTCTGGA+GGG 0.447281 1_3:-67897598 None:intergenic
TGGAGGTTGAGATGAATGTT+TGG 0.448773 1_3:-67895580 None:intergenic
GGATGATCAGATTGCAAAGC+TGG 0.457045 1_3:+67897883 Msa0136100:CDS
TTCCTTTCATTCCTTTCTGG+AGG 0.457901 1_3:-67897599 None:intergenic
CAACACCTTCTGTGAGGAAA+AGG 0.461132 1_3:+67897486 Msa0136100:CDS
TTTACTGTCACTGTCGCAGC+TGG 0.462931 1_3:-67897557 None:intergenic
GAGACATGTAAATCTAGAAC+AGG 0.478739 1_3:-67898380 None:intergenic
TGGTTCAGAATGATCATTTG+TGG 0.481130 1_3:-67895553 None:intergenic
ATCTTCTTCTCCCTAAATGC+TGG 0.485997 1_3:-67897509 None:intergenic
AAAGGTATATGCTCAAAGTA+AGG 0.495225 1_3:+67897346 Msa0136100:CDS
CTAAATCCTAATCCCAAAGA+AGG 0.496188 1_3:+67895269 Msa0136100:five_prime_UTR
AGAATGACGACGCTTCGAAT+CGG 0.503307 1_3:-67895351 None:intergenic
TTTCATTCCTTTCTGGAGGG+TGG 0.506208 1_3:-67897595 None:intergenic
TTTCATCAAGAGTAAGGTAT+GGG 0.512420 1_3:+67897720 Msa0136100:CDS
TGGTCGAAGCACTGGTCAAA+GGG 0.514223 1_3:+67897197 Msa0136100:CDS
AGTGACAGTAATACGTAGAA+AGG 0.518655 1_3:+67895232 Msa0136100:five_prime_UTR
GTGCAGGTTGGTCGAAGCAC+TGG 0.521659 1_3:+67897189 Msa0136100:CDS
AGAAGCGAATTGCAGAGGAC+AGG 0.525004 1_3:+67897663 Msa0136100:CDS
CCTAAGAAATATAGAAGAGA+TGG 0.536031 1_3:+67895495 Msa0136100:CDS
TAAATATGAATTGTTGATGA+GGG 0.536912 1_3:-67898356 None:intergenic
TAAGGAGAATAACCAAAGGT+TGG 0.542846 1_3:+67897364 Msa0136100:CDS
AATAACCAAAGGTTGGAGAC+AGG 0.542889 1_3:+67897371 Msa0136100:CDS
TTGGTCGAAGCACTGGTCAA+AGG 0.551358 1_3:+67897196 Msa0136100:CDS
GAAGCGAATTGCAGAGGACA+GGG 0.551739 1_3:+67897664 Msa0136100:CDS
TTAAGACTCAAACAGAGAAG+TGG 0.554278 1_3:+67897810 Msa0136100:CDS
TAATAAGAGCGAGATCTTGG+AGG 0.562376 1_3:-67895597 None:intergenic
GCAAAGAGATGAGAAATCAC+TGG 0.563837 1_3:+67897406 Msa0136100:CDS
ATAAATATGAATTGTTGATG+AGG 0.565427 1_3:-67898357 None:intergenic
AAGCGAGAACCTAGGAAGGA+TGG 0.574352 1_3:+67897695 Msa0136100:CDS
ACCCTCCAGAAAGGAATGAA+AGG 0.576042 1_3:+67897597 Msa0136100:CDS
TCCAGAAAGGAATGAAAGGA+AGG 0.580588 1_3:+67897601 Msa0136100:CDS
ATACTAGCCACCCTCCAGAA+AGG 0.585699 1_3:+67897588 Msa0136100:CDS
GAAACATGATTTGTATCAAG+AGG 0.586742 1_3:+67897832 Msa0136100:CDS
AAATCACTGGCTAAACTGGA+TGG 0.588753 1_3:+67897419 Msa0136100:CDS
GCTAAGTTCAGCATAGCACC+TGG 0.589155 1_3:+67898124 Msa0136100:three_prime_UTR
AGATTCTATTCCAAAGAATG+AGG 0.590814 1_3:+67897862 Msa0136100:CDS
GTAGATAGTTTAGCAAAGCA+TGG 0.591110 1_3:-67898273 None:intergenic
ATGACGACGCTTCGAATCGG+AGG 0.593613 1_3:-67895348 None:intergenic
TATTTCAACATGTGCCATGT+GGG 0.594116 1_3:+67897980 Msa0136100:three_prime_UTR
CTCAAGTGCTCAACAGACCC+AGG 0.598621 1_3:-67898142 None:intergenic
ACCTGAGAAGCGAATTGCAG+AGG 0.607322 1_3:+67897658 Msa0136100:CDS
TGAATGGGGCAATACTGTGC+AGG 0.607456 1_3:+67897173 Msa0136100:CDS
GGATTCGATTCAGATTCTTG+TGG 0.613152 1_3:+67895290 Msa0136100:five_prime_UTR
TTCATCAAGAGTAAGGTATG+GGG 0.620262 1_3:+67897721 Msa0136100:CDS
CAACAAGCGAGAACCTAGGA+AGG 0.622024 1_3:+67897691 Msa0136100:CDS
GATCTCAGTGGATTCAAGAG+AGG 0.625358 1_3:+67897529 Msa0136100:CDS
AGAAAGGAATGAAAGGAAGG+AGG 0.636511 1_3:+67897604 Msa0136100:CDS
TCATCAAGAGTAAGGTATGG+GGG 0.637056 1_3:+67897722 Msa0136100:CDS
AATCCAACAAGCGAGAACCT+AGG 0.638185 1_3:+67897687 Msa0136100:CDS
TAGGTTAACAGGGTTATCCA+GGG 0.638683 1_3:+67898188 Msa0136100:three_prime_UTR
ACTGGTCAAAGGGAAGCTGA+TGG 0.653810 1_3:+67897207 Msa0136100:CDS
AGGGTTATCCCTAATGACAA+CGG 0.654194 1_3:+67898207 Msa0136100:three_prime_UTR
CTAAGTTCAGCATAGCACCT+GGG 0.655614 1_3:+67898125 Msa0136100:three_prime_UTR
GGTTGAGATGAATGTTTGGA+CGG 0.657350 1_3:-67895576 None:intergenic
TTATTTCAACATGTGCCATG+TGG 0.659372 1_3:+67897979 Msa0136100:three_prime_UTR
CTAAGCTCGATCGTGAACCA+AGG 0.670920 1_3:+67895372 Msa0136100:CDS
TGGGGCAATACTGTGCAGGT+TGG 0.672427 1_3:+67897177 Msa0136100:CDS
AAAGTAAGGAGAATAACCAA+AGG 0.679155 1_3:+67897360 Msa0136100:CDS
TGAGATGAATGTTTGGACGG+TGG 0.681415 1_3:-67895573 None:intergenic
GTTGTCATTAGGGATAACCC+TGG 0.682031 1_3:-67898205 None:intergenic
ATGATCCAACACCTTCTGTG+AGG 0.687855 1_3:+67897480 Msa0136100:CDS
TCTCTGGAAATTGTCCCACA+TGG 0.701395 1_3:-67897994 None:intergenic
TAGGGAGAAGAAGATCTCAG+TGG 0.726006 1_3:+67897517 Msa0136100:CDS
GGAGGCAATAGCAATCACAG+AGG 0.738956 1_3:+67897749 Msa0136100:CDS
GTTATCCCTAATGACAACGG+GGG 0.742554 1_3:+67898210 Msa0136100:three_prime_UTR
GGTTATCCCTAATGACAACG+GGG 0.760063 1_3:+67898209 Msa0136100:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATCATTTTATTTAAATGTT+AGG + chr1_3:67896069-67896088 Msa0136100:intron 10.0%
!!! ATCATTTTATTTAAATGTTA+GGG + chr1_3:67896070-67896089 Msa0136100:intron 10.0%
!!! AATCATTTATTTTTAAACAA+AGG - chr1_3:67896353-67896372 None:intergenic 10.0%
!!! TTGTCTTTTATTAACATTTA+TGG - chr1_3:67896794-67896813 None:intergenic 15.0%
!! TATAAAGAAATCATGAAAAT+TGG - chr1_3:67898023-67898042 None:intergenic 15.0%
!!! TTTTGTTTGAATGTTGATTA+TGG + chr1_3:67895456-67895475 Msa0136100:intron 20.0%
!! TTAATGTGCTTCTTTATATT+TGG + chr1_3:67895656-67895675 Msa0136100:intron 20.0%
!!! AATTTTTTTATCTCATTCTG+AGG - chr1_3:67896043-67896062 None:intergenic 20.0%
!! AAATGTTAATAAAAGACAAC+TGG + chr1_3:67896795-67896814 Msa0136100:intron 20.0%
!! TACCTTTATATAAACAGTAT+TGG + chr1_3:67896954-67896973 Msa0136100:intron 20.0%
!! TTCCAATACTGTTTATATAA+AGG - chr1_3:67896959-67896978 None:intergenic 20.0%
!! ACATCTATAGCATATAAAAA+GGG - chr1_3:67897047-67897066 None:intergenic 20.0%
!! AACATCTATAGCATATAAAA+AGG - chr1_3:67897048-67897067 None:intergenic 20.0%
!!! CTTTACATGTTTTAGTTTTA+TGG + chr1_3:67898051-67898070 Msa0136100:three_prime_UTR 20.0%
!!! CTAAACTATCTACTTTTTTT+TGG + chr1_3:67898283-67898302 Msa0136100:three_prime_UTR 20.0%
!!! ATCTACTTTTTTTTGGTATA+TGG + chr1_3:67898290-67898309 Msa0136100:three_prime_UTR 20.0%
!!! TAAATATGAATTGTTGATGA+GGG - chr1_3:67898359-67898378 None:intergenic 20.0%
!! ATAAATATGAATTGTTGATG+AGG - chr1_3:67898360-67898379 None:intergenic 20.0%
! CATCTCTTCTATATTTCTTA+GGG - chr1_3:67895497-67895516 None:intergenic 25.0%
! ATGCAAATTTGAATGTAGTT+AGG - chr1_3:67895695-67895714 None:intergenic 25.0%
!!! GTTTTCCAACATTTTAAGTT+TGG - chr1_3:67895898-67895917 None:intergenic 25.0%
! TTGTCAATAGCATATTATAG+CGG + chr1_3:67895922-67895941 Msa0136100:intron 25.0%
!!! TAAGTGTGTGTTTGTTTTAT+CGG - chr1_3:67896266-67896285 None:intergenic 25.0%
! TCTAAATCAAGTAGTTAACT+TGG + chr1_3:67896458-67896477 Msa0136100:intron 25.0%
! CTAAATCAAGTAGTTAACTT+GGG + chr1_3:67896459-67896478 Msa0136100:intron 25.0%
! TGGTAAACAATAAATACGTT+GGG + chr1_3:67896544-67896563 Msa0136100:intron 25.0%
! TAGGATTTGCATTATGATTA+AGG - chr1_3:67896659-67896678 None:intergenic 25.0%
! ACCCAATACAACAATATATA+CGG - chr1_3:67896761-67896780 None:intergenic 25.0%
! AAAACCAATCTCAACATTTA+TGG - chr1_3:67896886-67896905 None:intergenic 25.0%
! TTGGAAAGAAAACATCTTAA+TGG + chr1_3:67896973-67896992 Msa0136100:intron 25.0%
!!! TGTATGCAAACTATTTTTCT+GGG + chr1_3:67897074-67897093 Msa0136100:intron 25.0%
!!! TCTTTTCGCTTTATTGTATA+TGG + chr1_3:67897266-67897285 Msa0136100:intron 25.0%
! TTTATTGTATATGGATGGTT+TGG + chr1_3:67897275-67897294 Msa0136100:intron 25.0%
! TTCAAACTAAAGCCAATATT+TGG + chr1_3:67897927-67897946 Msa0136100:three_prime_UTR 25.0%
! ATAACAAGCTTACCAAATAT+TGG - chr1_3:67897942-67897961 None:intergenic 25.0%
!!! AATATTTGGTAAGCTTGTTA+TGG + chr1_3:67897941-67897960 Msa0136100:three_prime_UTR 25.0%
! TAATATCACAATGATCGATT+TGG - chr1_3:67898097-67898116 None:intergenic 25.0%
!! ATTTTTGCAAATAGGTTAAC+AGG + chr1_3:67898177-67898196 Msa0136100:three_prime_UTR 25.0%
!! TTTTTGCAAATAGGTTAACA+GGG + chr1_3:67898178-67898197 Msa0136100:three_prime_UTR 25.0%
! AATCTCGATGAGACATTTTA+GGG - chr1_3:67895328-67895347 None:intergenic 30.0%
CCATCTCTTCTATATTTCTT+AGG - chr1_3:67895498-67895517 None:intergenic 30.0%
CCTAAGAAATATAGAAGAGA+TGG + chr1_3:67895495-67895514 Msa0136100:CDS 30.0%
!!! CCAACATTTTAAGTTTGGTT+TGG - chr1_3:67895893-67895912 None:intergenic 30.0%
CCAAACCAAACTTAAAATGT+TGG + chr1_3:67895890-67895909 Msa0136100:intron 30.0%
TAAATGGATGTCTCACTAAA+TGG - chr1_3:67896122-67896141 None:intergenic 30.0%
ACATCCATTTATGCAATGTT+TGG + chr1_3:67896131-67896150 Msa0136100:intron 30.0%
ATGTCCAAACATTGCATAAA+TGG - chr1_3:67896138-67896157 None:intergenic 30.0%
!! ATGTAGCTTCTTTAAAACCA+CGG - chr1_3:67896200-67896219 None:intergenic 30.0%
TTATCGGTGGAATAAACAAA+CGG - chr1_3:67896250-67896269 None:intergenic 30.0%
!! GTTGATAACATTGTTGGAAA+AGG + chr1_3:67896307-67896326 Msa0136100:intron 30.0%
TGATTTCTCTATTCACAAAG+AGG + chr1_3:67896368-67896387 Msa0136100:intron 30.0%
! ACTACTTGATTTAGAGCTAA+AGG - chr1_3:67896453-67896472 None:intergenic 30.0%
TTTATTGTTTACCAGCTTGT+AGG - chr1_3:67896538-67896557 None:intergenic 30.0%
CTGGTAAACAATAAATACGT+TGG + chr1_3:67896543-67896562 Msa0136100:intron 30.0%
TAAACAATAAATACGTTGGG+AGG + chr1_3:67896547-67896566 Msa0136100:intron 30.0%
TAACATCGAGAAAATGGAAA+TGG - chr1_3:67896684-67896703 None:intergenic 30.0%
TGCCGTATATATTGTTGTAT+TGG + chr1_3:67896756-67896775 Msa0136100:intron 30.0%
GCCGTATATATTGTTGTATT+GGG + chr1_3:67896757-67896776 Msa0136100:intron 30.0%
AATCTCAACATTTATGGTGA+AGG - chr1_3:67896880-67896899 None:intergenic 30.0%
TTCACCATAAATGTTGAGAT+TGG + chr1_3:67896879-67896898 Msa0136100:intron 30.0%
AATGGACATTGAAGATAACT+TGG + chr1_3:67896991-67897010 Msa0136100:intron 30.0%
!! GTGTATGCAAACTATTTTTC+TGG + chr1_3:67897073-67897092 Msa0136100:intron 30.0%
!! GTATGCAAACTATTTTTCTG+GGG + chr1_3:67897075-67897094 Msa0136100:intron 30.0%
!!! TGTTTTAACAGCATCATGAA+TGG + chr1_3:67897157-67897176 Msa0136100:intron 30.0%
!! GTTTTAACAGCATCATGAAT+GGG + chr1_3:67897158-67897177 Msa0136100:intron 30.0%
! TTTTAACAGCATCATGAATG+GGG + chr1_3:67897159-67897178 Msa0136100:intron 30.0%
! TTCGCTTTATTGTATATGGA+TGG + chr1_3:67897270-67897289 Msa0136100:intron 30.0%
!! GTTTGGAATCGAAGAATTTT+GGG - chr1_3:67897323-67897342 None:intergenic 30.0%
!! TGTTTGGAATCGAAGAATTT+TGG - chr1_3:67897324-67897343 None:intergenic 30.0%
! AAAGGTATATGCTCAAAGTA+AGG + chr1_3:67897346-67897365 Msa0136100:CDS 30.0%
AAAGTAAGGAGAATAACCAA+AGG + chr1_3:67897360-67897379 Msa0136100:CDS 30.0%
! ATGGATTTTCATCAAGAGTA+AGG + chr1_3:67897714-67897733 Msa0136100:CDS 30.0%
! TTTTCATCAAGAGTAAGGTA+TGG + chr1_3:67897719-67897738 Msa0136100:CDS 30.0%
TTTCATCAAGAGTAAGGTAT+GGG + chr1_3:67897720-67897739 Msa0136100:CDS 30.0%
AGAGGAAGAGACAAATTTAA+TGG + chr1_3:67897767-67897786 Msa0136100:CDS 30.0%
TTCTCTGTTTGAGTCTTAAT+AGG - chr1_3:67897809-67897828 None:intergenic 30.0%
! GAAACATGATTTGTATCAAG+AGG + chr1_3:67897832-67897851 Msa0136100:CDS 30.0%
AGATTCTATTCCAAAGAATG+AGG + chr1_3:67897862-67897881 Msa0136100:CDS 30.0%
! TCATGAAAATTGGTAATCTC+TGG - chr1_3:67898013-67898032 None:intergenic 30.0%
AGTGACAGTAATACGTAGAA+AGG + chr1_3:67895232-67895251 Msa0136100:five_prime_UTR 35.0%
!! CTTCTTTGGGATTAGGATTT+AGG - chr1_3:67895271-67895290 None:intergenic 35.0%
CTAAATCCTAATCCCAAAGA+AGG + chr1_3:67895269-67895288 Msa0136100:five_prime_UTR 35.0%
TCTGAATCGAATCCTTCTTT+GGG - chr1_3:67895284-67895303 None:intergenic 35.0%
ATCTGAATCGAATCCTTCTT+TGG - chr1_3:67895285-67895304 None:intergenic 35.0%
! GAATCTCGATGAGACATTTT+AGG - chr1_3:67895329-67895348 None:intergenic 35.0%
TGGTTCAGAATGATCATTTG+TGG - chr1_3:67895556-67895575 None:intergenic 35.0%
TGATAATAAGAGCGAGATCT+TGG - chr1_3:67895603-67895622 None:intergenic 35.0%
AAGATCTCGCTCTTATTATC+AGG + chr1_3:67895602-67895621 Msa0136100:CDS 35.0%
ATGTAGTTAGGAACAGAAGT+TGG - chr1_3:67895683-67895702 None:intergenic 35.0%
!!! TTTTATCTCATTCTGAGGTG+AGG - chr1_3:67896038-67896057 None:intergenic 35.0%
TTATGCAATGTTTGGACATG+TGG + chr1_3:67896139-67896158 Msa0136100:intron 35.0%
TGTATATCCCTGCATACAAT+TGG + chr1_3:67896498-67896517 Msa0136100:intron 35.0%
AGTAGCTAACATCGAGAAAA+TGG - chr1_3:67896690-67896709 None:intergenic 35.0%
ATGTTAGCTACTACAACATG+TGG + chr1_3:67896698-67896717 Msa0136100:intron 35.0%
GTTACTTATTCGAGATTACC+AGG + chr1_3:67896731-67896750 Msa0136100:intron 35.0%
AACAATATATACGGCAATCC+TGG - chr1_3:67896752-67896771 None:intergenic 35.0%
! ACAACTGGAATTTGCTTTGA+CGG + chr1_3:67896810-67896829 Msa0136100:intron 35.0%
TGACCTCCTTATAAATCAAG+GGG - chr1_3:67896919-67896938 None:intergenic 35.0%
CTGACCTCCTTATAAATCAA+GGG - chr1_3:67896920-67896939 None:intergenic 35.0%
ACTGACCTCCTTATAAATCA+AGG - chr1_3:67896921-67896940 None:intergenic 35.0%
GATGCTGTTAAAACATGCAT+TGG - chr1_3:67897152-67897171 None:intergenic 35.0%
TCTTCGATTCCAAACAGAAA+AGG + chr1_3:67897328-67897347 Msa0136100:intron 35.0%
! GAGCATATACCTTTTCTGTT+TGG - chr1_3:67897340-67897359 None:intergenic 35.0%
TAAGGAGAATAACCAAAGGT+TGG + chr1_3:67897364-67897383 Msa0136100:CDS 35.0%
TTCATCAAGAGTAAGGTATG+GGG + chr1_3:67897721-67897740 Msa0136100:CDS 35.0%
TTAAGACTCAAACAGAGAAG+TGG + chr1_3:67897810-67897829 Msa0136100:CDS 35.0%
ATCTGATCATCCTCATTCTT+TGG - chr1_3:67897875-67897894 None:intergenic 35.0%
TTATTTCAACATGTGCCATG+TGG + chr1_3:67897979-67897998 Msa0136100:three_prime_UTR 35.0%
TATTTCAACATGTGCCATGT+GGG + chr1_3:67897980-67897999 Msa0136100:three_prime_UTR 35.0%
! GGCTGTCAATTTTTGCAAAT+AGG + chr1_3:67898169-67898188 Msa0136100:three_prime_UTR 35.0%
GTAGATAGTTTAGCAAAGCA+TGG - chr1_3:67898276-67898295 None:intergenic 35.0%
!! TCGAATCCTTCTTTGGGATT+AGG - chr1_3:67895278-67895297 None:intergenic 40.0%
GGATTCGATTCAGATTCTTG+TGG + chr1_3:67895290-67895309 Msa0136100:five_prime_UTR 40.0%
! GAAGAAGAAGAAGTGTACCT+TGG - chr1_3:67895392-67895411 None:intergenic 40.0%
GGTTGAGATGAATGTTTGGA+CGG - chr1_3:67895579-67895598 None:intergenic 40.0%
TGGAGGTTGAGATGAATGTT+TGG - chr1_3:67895583-67895602 None:intergenic 40.0%
TAATAAGAGCGAGATCTTGG+AGG - chr1_3:67895600-67895619 None:intergenic 40.0%
TGCATACACCTGAAACTTGA+TGG + chr1_3:67895710-67895729 Msa0136100:intron 40.0%
TACACCTGAAACTTGATGGA+AGG + chr1_3:67895714-67895733 Msa0136100:intron 40.0%
! AACTTGATGGAAGGCATGTA+TGG + chr1_3:67895723-67895742 Msa0136100:intron 40.0%
TTTACAGCTGTAGATGTGTC+CGG + chr1_3:67895798-67895817 Msa0136100:intron 40.0%
TCCTCTGGTATTAAGCTCTT+AGG + chr1_3:67895859-67895878 Msa0136100:intron 40.0%
TCCTAAGAGCTTAATACCAG+AGG - chr1_3:67895863-67895882 None:intergenic 40.0%
AGTAGAGCAACCTATTGTAG+CGG + chr1_3:67895976-67895995 Msa0136100:intron 40.0%
TCTCACCTTTCAAAGCCATT+TGG + chr1_3:67896174-67896193 Msa0136100:intron 40.0%
!! TCTTTAAAACCACGGCCAAA+TGG - chr1_3:67896192-67896211 None:intergenic 40.0%
!!! GTGTGTGTTTGTTTTATCGG+TGG - chr1_3:67896263-67896282 None:intergenic 40.0%
! TTAGCTGCCATTTCACTATG+TGG + chr1_3:67896283-67896302 Msa0136100:intron 40.0%
! TAGCTGCCATTTCACTATGT+GGG + chr1_3:67896284-67896303 Msa0136100:intron 40.0%
ATCAACCCCACATAGTGAAA+TGG - chr1_3:67896293-67896312 None:intergenic 40.0%
!! TGTGGGGTTGATAACATTGT+TGG + chr1_3:67896301-67896320 Msa0136100:intron 40.0%
AAGCTGACCAATTGTATGCA+GGG - chr1_3:67896508-67896527 None:intergenic 40.0%
TAAATACGTTGGGAGGAAAC+TGG + chr1_3:67896554-67896573 Msa0136100:intron 40.0%
AAATACGTTGGGAGGAAACT+GGG + chr1_3:67896555-67896574 Msa0136100:intron 40.0%
CCAAAGCAAACAGTAACGAA+TGG - chr1_3:67896597-67896616 None:intergenic 40.0%
CCATTCGTTACTGTTTGCTT+TGG + chr1_3:67896594-67896613 Msa0136100:intron 40.0%
AATTGCTCACAACTTGTACC+AGG - chr1_3:67896630-67896649 None:intergenic 40.0%
CGAGAAAATGGAAATGGTGT+AGG - chr1_3:67896678-67896697 None:intergenic 40.0%
TTAGCTACTACAACATGTGG+TGG + chr1_3:67896701-67896720 Msa0136100:intron 40.0%
TAGCTACTACAACATGTGGT+GGG + chr1_3:67896702-67896721 Msa0136100:intron 40.0%
CCTTATAAATCAAGGGGCAA+AGG - chr1_3:67896913-67896932 None:intergenic 40.0%
CCTTTGCCCCTTGATTTATA+AGG + chr1_3:67896910-67896929 Msa0136100:intron 40.0%
TTGCCCCTTGATTTATAAGG+AGG + chr1_3:67896913-67896932 Msa0136100:intron 40.0%
!!! AAACTATTTTTCTGGGGCGT+GGG + chr1_3:67897081-67897100 Msa0136100:intron 40.0%
AATAACCAAAGGTTGGAGAC+AGG + chr1_3:67897371-67897390 Msa0136100:CDS 40.0%
GCAAAGAGATGAGAAATCAC+TGG + chr1_3:67897406-67897425 Msa0136100:CDS 40.0%
! TGAGAAATCACTGGCTAAAC+TGG + chr1_3:67897415-67897434 Msa0136100:CDS 40.0%
! AAATCACTGGCTAAACTGGA+TGG + chr1_3:67897419-67897438 Msa0136100:CDS 40.0%
!! GAAGAGACAGTTTTCGAGAA+AGG + chr1_3:67897453-67897472 Msa0136100:CDS 40.0%
ATCTTCTTCTCCCTAAATGC+TGG - chr1_3:67897512-67897531 None:intergenic 40.0%
TCCTTTCATTCCTTTCTGGA+GGG - chr1_3:67897601-67897620 None:intergenic 40.0%
TTCCTTTCATTCCTTTCTGG+AGG - chr1_3:67897602-67897621 None:intergenic 40.0%
TCCAGAAAGGAATGAAAGGA+AGG + chr1_3:67897601-67897620 Msa0136100:CDS 40.0%
TCCTTCCTTTCATTCCTTTC+TGG - chr1_3:67897605-67897624 None:intergenic 40.0%
AGAAAGGAATGAAAGGAAGG+AGG + chr1_3:67897604-67897623 Msa0136100:CDS 40.0%
TCAGGTCTATCTAGATGGTT+AGG - chr1_3:67897644-67897663 None:intergenic 40.0%
GATGAAAATCCATCCTTCCT+AGG - chr1_3:67897707-67897726 None:intergenic 40.0%
TCATCAAGAGTAAGGTATGG+GGG + chr1_3:67897722-67897741 Msa0136100:CDS 40.0%
ATAGGTTAACAGGGTTATCC+AGG + chr1_3:67898187-67898206 Msa0136100:three_prime_UTR 40.0%
TAGGTTAACAGGGTTATCCA+GGG + chr1_3:67898188-67898207 Msa0136100:three_prime_UTR 40.0%
AGGGTTATCCCTAATGACAA+CGG + chr1_3:67898207-67898226 Msa0136100:three_prime_UTR 40.0%
GATGAGGGAAAAAAGAACAC+AGG - chr1_3:67898344-67898363 None:intergenic 40.0%
AGAATGACGACGCTTCGAAT+CGG - chr1_3:67895354-67895373 None:intergenic 45.0%
TGAGATGAATGTTTGGACGG+TGG - chr1_3:67895576-67895595 None:intergenic 45.0%
CATGCCTTCCATCAAGTTTC+AGG - chr1_3:67895721-67895740 None:intergenic 45.0%
! TGGAAGGCATGTATGGTGTT+TGG + chr1_3:67895730-67895749 Msa0136100:intron 45.0%
ACTGACACAAACATGGACAC+CGG - chr1_3:67895820-67895839 None:intergenic 45.0%
!! ACGAAGCACTGACACAAACA+TGG - chr1_3:67895827-67895846 None:intergenic 45.0%
TGTTTGTGTCAGTGCTTCGT+AGG + chr1_3:67895827-67895846 Msa0136100:intron 45.0%
!! CGTAGGTGTTGTTTATCCTC+TGG + chr1_3:67895844-67895863 Msa0136100:intron 45.0%
! AGCTGCCATTTCACTATGTG+GGG + chr1_3:67896285-67896304 Msa0136100:intron 45.0%
CAAGCTGACCAATTGTATGC+AGG - chr1_3:67896509-67896528 None:intergenic 45.0%
!!! CAAACTATTTTTCTGGGGCG+TGG + chr1_3:67897080-67897099 Msa0136100:intron 45.0%
! GCATTGGAAAGCATATACCG+AGG - chr1_3:67897136-67897155 None:intergenic 45.0%
TTTGACCTGTCTCCAACCTT+TGG - chr1_3:67897379-67897398 None:intergenic 45.0%
ATGATCCAACACCTTCTGTG+AGG + chr1_3:67897480-67897499 Msa0136100:CDS 45.0%
!! CTTTTCCTCACAGAAGGTGT+TGG - chr1_3:67897488-67897507 None:intergenic 45.0%
CAACACCTTCTGTGAGGAAA+AGG + chr1_3:67897486-67897505 Msa0136100:CDS 45.0%
TGAGGAAAAGGCCAGCATTT+AGG + chr1_3:67897498-67897517 Msa0136100:CDS 45.0%
GAGGAAAAGGCCAGCATTTA+GGG + chr1_3:67897499-67897518 Msa0136100:CDS 45.0%
TAGGGAGAAGAAGATCTCAG+TGG + chr1_3:67897517-67897536 Msa0136100:CDS 45.0%
! GATCTCAGTGGATTCAAGAG+AGG + chr1_3:67897529-67897548 Msa0136100:CDS 45.0%
! TTTCATTCCTTTCTGGAGGG+TGG - chr1_3:67897598-67897617 None:intergenic 45.0%
ACCCTCCAGAAAGGAATGAA+AGG + chr1_3:67897597-67897616 Msa0136100:CDS 45.0%
GCTTCTCAGGTCTATCTAGA+TGG - chr1_3:67897649-67897668 None:intergenic 45.0%
AATCCAACAAGCGAGAACCT+AGG + chr1_3:67897687-67897706 Msa0136100:CDS 45.0%
GGATGATCAGATTGCAAAGC+TGG + chr1_3:67897883-67897902 Msa0136100:CDS 45.0%
! TCTCTGGAAATTGTCCCACA+TGG - chr1_3:67897997-67898016 None:intergenic 45.0%
CTAAGTTCAGCATAGCACCT+GGG + chr1_3:67898125-67898144 Msa0136100:three_prime_UTR 45.0%
GTTGTCATTAGGGATAACCC+TGG - chr1_3:67898208-67898227 None:intergenic 45.0%
GGGTTATCCCTAATGACAAC+GGG + chr1_3:67898208-67898227 Msa0136100:three_prime_UTR 45.0%
GGTTATCCCTAATGACAACG+GGG + chr1_3:67898209-67898228 Msa0136100:three_prime_UTR 45.0%
GTTATCCCTAATGACAACGG+GGG + chr1_3:67898210-67898229 Msa0136100:three_prime_UTR 45.0%
ATGATCCCCCGTTGTCATTA+GGG - chr1_3:67898218-67898237 None:intergenic 45.0%
AATGATCCCCCGTTGTCATT+AGG - chr1_3:67898219-67898238 None:intergenic 45.0%
!!! ATTTAAATAAAATGATTTTA+CGG - chr1_3:67896066-67896085 None:intergenic 5.0%
!! TATATATCAATATAAAATTA+AGG - chr1_3:67897240-67897259 None:intergenic 5.0%
CTAAGCTCGATCGTGAACCA+AGG + chr1_3:67895372-67895391 Msa0136100:CDS 50.0%
!! TTTTGGCTGGCCGCTACAAT+AGG - chr1_3:67895989-67896008 None:intergenic 50.0%
! ATCTGCGGCAGCCACTATTT+TGG - chr1_3:67896006-67896025 None:intergenic 50.0%
GTGAGGCACAATAGCATCTG+CGG - chr1_3:67896021-67896040 None:intergenic 50.0%
!! CACGGCCAAATGGCTTTGAA+AGG - chr1_3:67896182-67896201 None:intergenic 50.0%
CTTTCAAAGCCATTTGGCCG+TGG + chr1_3:67896180-67896199 Msa0136100:intron 50.0%
GCTTGTAGCTACCTACAAGC+TGG + chr1_3:67896524-67896543 Msa0136100:intron 50.0%
TGCTTTGGCTGTTAACTGCC+TGG + chr1_3:67896609-67896628 Msa0136100:intron 50.0%
! CTACTACAACATGTGGTGGG+TGG + chr1_3:67896705-67896724 Msa0136100:intron 50.0%
! GCATATACCGAGGCACTTGA+AGG - chr1_3:67897126-67897145 None:intergenic 50.0%
TGAATGGGGCAATACTGTGC+AGG + chr1_3:67897173-67897192 Msa0136100:CDS 50.0%
!! TTGGTCGAAGCACTGGTCAA+AGG + chr1_3:67897196-67897215 Msa0136100:CDS 50.0%
!! TGGTCGAAGCACTGGTCAAA+GGG + chr1_3:67897197-67897216 Msa0136100:CDS 50.0%
ACTGGTCAAAGGGAAGCTGA+TGG + chr1_3:67897207-67897226 Msa0136100:CDS 50.0%
TTTACTGTCACTGTCGCAGC+TGG - chr1_3:67897560-67897579 None:intergenic 50.0%
! TTTCTGGAGGGTGGCTAGTA+TGG - chr1_3:67897589-67897608 None:intergenic 50.0%
ATACTAGCCACCCTCCAGAA+AGG + chr1_3:67897588-67897607 Msa0136100:CDS 50.0%
ACCTGAGAAGCGAATTGCAG+AGG + chr1_3:67897658-67897677 Msa0136100:CDS 50.0%
TCCTCTGCAATTCGCTTCTC+AGG - chr1_3:67897662-67897681 None:intergenic 50.0%
AGAAGCGAATTGCAGAGGAC+AGG + chr1_3:67897663-67897682 Msa0136100:CDS 50.0%
GAAGCGAATTGCAGAGGACA+GGG + chr1_3:67897664-67897683 Msa0136100:CDS 50.0%
CTTCCTAGGTTCTCGCTTGT+TGG - chr1_3:67897693-67897712 None:intergenic 50.0%
CAACAAGCGAGAACCTAGGA+AGG + chr1_3:67897691-67897710 Msa0136100:CDS 50.0%
AAGCGAGAACCTAGGAAGGA+TGG + chr1_3:67897695-67897714 Msa0136100:CDS 50.0%
AGAGTAAGGTATGGGGGAAG+TGG + chr1_3:67897728-67897747 Msa0136100:CDS 50.0%
GGAGGCAATAGCAATCACAG+AGG + chr1_3:67897749-67897768 Msa0136100:CDS 50.0%
GCTAAGTTCAGCATAGCACC+TGG + chr1_3:67898124-67898143 Msa0136100:three_prime_UTR 50.0%
TCTGTTGAGCACTTGAGCTC+TGG + chr1_3:67898148-67898167 Msa0136100:three_prime_UTR 50.0%
ATGACGACGCTTCGAATCGG+AGG - chr1_3:67895351-67895370 None:intergenic 55.0%
TGCATGTCGCGTTGCAGTCA+GGG - chr1_3:67895954-67895973 None:intergenic 55.0%
TTGCATGTCGCGTTGCAGTC+AGG - chr1_3:67895955-67895974 None:intergenic 55.0%
GTAGCGGCCAGCCAAAATAG+TGG + chr1_3:67895992-67896011 Msa0136100:intron 55.0%
! ACCGAGGCACTTGAAGGCAT+GGG - chr1_3:67897120-67897139 None:intergenic 55.0%
! TACCGAGGCACTTGAAGGCA+TGG - chr1_3:67897121-67897140 None:intergenic 55.0%
TGGGGCAATACTGTGCAGGT+TGG + chr1_3:67897177-67897196 Msa0136100:CDS 55.0%
!!! GCTGGCCTTTTCCTCACAGA+AGG - chr1_3:67897494-67897513 None:intergenic 55.0%
GTAAGGTATGGGGGAAGTGG+AGG + chr1_3:67897731-67897750 Msa0136100:CDS 55.0%
CTCAAGTGCTCAACAGACCC+AGG - chr1_3:67898145-67898164 None:intergenic 55.0%
GCATGTCGCGTTGCAGTCAG+GGG - chr1_3:67895953-67895972 None:intergenic 60.0%
!!! GCGGCAGCCACTATTTTGGC+TGG - chr1_3:67896002-67896021 None:intergenic 60.0%
! CCGAGGCACTTGAAGGCATG+GGG - chr1_3:67897119-67897138 None:intergenic 60.0%
CCCCATGCCTTCAAGTGCCT+CGG + chr1_3:67897116-67897135 Msa0136100:intron 60.0%
!! GTGCAGGTTGGTCGAAGCAC+TGG + chr1_3:67897189-67897208 Msa0136100:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 67895223 67898387 67895223 ID=Msa0136100;Name=Msa0136100
chr1_3 mRNA 67895223 67898387 67895223 ID=Msa0136100-mRNA-1;Parent=Msa0136100;Name=Msa0136100-mRNA-1;_AED=0.26;_eAED=0.26;_QI=109|0.66|0.75|1|1|1|4|462|277
chr1_3 exon 67895223 67895393 67895223 ID=Msa0136100-mRNA-1:exon:23405;Parent=Msa0136100-mRNA-1
chr1_3 exon 67895494 67895623 67895494 ID=Msa0136100-mRNA-1:exon:23406;Parent=Msa0136100-mRNA-1
chr1_3 exon 67897168 67897228 67897168 ID=Msa0136100-mRNA-1:exon:23407;Parent=Msa0136100-mRNA-1
chr1_3 exon 67897345 67898387 67897345 ID=Msa0136100-mRNA-1:exon:23408;Parent=Msa0136100-mRNA-1
chr1_3 five_prime_UTR 67895223 67895331 67895223 ID=Msa0136100-mRNA-1:five_prime_utr;Parent=Msa0136100-mRNA-1
chr1_3 CDS 67895332 67895393 67895332 ID=Msa0136100-mRNA-1:cds;Parent=Msa0136100-mRNA-1
chr1_3 CDS 67895494 67895623 67895494 ID=Msa0136100-mRNA-1:cds;Parent=Msa0136100-mRNA-1
chr1_3 CDS 67897168 67897228 67897168 ID=Msa0136100-mRNA-1:cds;Parent=Msa0136100-mRNA-1
chr1_3 CDS 67897345 67897925 67897345 ID=Msa0136100-mRNA-1:cds;Parent=Msa0136100-mRNA-1
chr1_3 three_prime_UTR 67897926 67898387 67897926 ID=Msa0136100-mRNA-1:three_prime_utr;Parent=Msa0136100-mRNA-1
Gene Sequence

>Msa0136100

ATGTCTCATCGAGATTCCTCCGATTCGAAGCGTCGTCATTCTAAGCTCGATCGTGAACCAAGCCCTAAGAAATATAGAAGAGATGGAAAACAAGATAGAGAAAGAGAAAGAGAAAAATTAACCACAAATGATCATTCTGAACCACCGTCCAAACATTCATCTCAACCTCCAAGATCTCGCTCTTATTATCAGCATCATGAATGGGGCAATACTGTGCAGGTTGGTCGAAGCACTGGTCAAAGGGAAGCTGATGAAAAGGTATATGCTCAAAGTAAGGAGAATAACCAAAGGTTGGAGACAGGTCAAAGTAGAGAGCAAAGAGATGAGAAATCACTGGCTAAACTGGATGGTAATTTTCAGAGAAGAGACAGTTTTCGAGAAAGGAAAGATGATCCAACACCTTCTGTGAGGAAAAGGCCAGCATTTAGGGAGAAGAAGATCTCAGTGGATTCAAGAGAGGCTAATCCAGCTGCGACAGTGACAGTAAAGTCAAGCCATACTAGCCACCCTCCAGAAAGGAATGAAAGGAAGGAGGAAAGAAGCAGCAATCCTAACCATCTAGATAGACCTGAGAAGCGAATTGCAGAGGACAGGGAATCCAACAAGCGAGAACCTAGGAAGGATGGATTTTCATCAAGAGTAAGGTATGGGGGAAGTGGAGGCAATAGCAATCACAGAGGAAGAGACAAATTTAATGGAAGACAAGATAATCATCCTATTAAGACTCAAACAGAGAAGTGGAAACATGATTTGTATCAAGAGGTTAACAAAGATTCTATTCCAAAGAATGAGGATGATCAGATTGCAAAGCTGGAAGCACTCTTAGCTTCATAA

Protein sequence

>Msa0136100

MSHRDSSDSKRRHSKLDREPSPKKYRRDGKQDREREREKLTTNDHSEPPSKHSSQPPRSRSYYQHHEWGNTVQVGRSTGQREADEKVYAQSKENNQRLETGQSREQRDEKSLAKLDGNFQRRDSFRERKDDPTPSVRKRPAFREKKISVDSREANPAATVTVKSSHTSHPPERNERKEERSSNPNHLDRPEKRIAEDRESNKREPRKDGFSSRVRYGGSGGNSNHRGRDKFNGRQDNHPIKTQTEKWKHDLYQEVNKDSIPKNEDDQIAKLEALLAS*