AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1320410


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1320410 MtrunA17_Chr8g0351861 97.380 229 6 0 1 229 1 229 9.89e-170 466
Msa1320410 MtrunA17_Chr8g0381841 57.014 221 90 3 6 226 8 223 2.67e-90 265
Msa1320410 MtrunA17_Chr3g0123821 55.656 221 92 3 6 226 7 221 3.22e-89 262
Msa1320410 MtrunA17_Chr1g0174281 53.540 226 101 3 1 226 1 222 5.79e-87 256
Msa1320410 MtrunA17_Chr7g0231131 55.189 212 92 2 1 212 1 209 3.18e-86 254
Msa1320410 MtrunA17_Chr7g0214241 55.349 215 86 2 15 227 14 220 3.51e-82 244
Msa1320410 MtrunA17_Chr2g0315551 53.744 227 94 4 1 227 1 216 6.61e-82 243
Msa1320410 MtrunA17_Chr4g0032201 53.636 220 92 3 8 227 5 214 5.68e-81 241
Msa1320410 MtrunA17_Chr2g0319951 51.931 233 90 3 1 227 1 217 1.54e-80 240
Msa1320410 MtrunA17_Chr4g0046261 53.744 227 94 4 1 227 1 216 8.71e-80 238
Msa1320410 MtrunA17_Chr3g0112681 55.607 214 87 2 14 227 10 215 1.64e-79 237
Msa1320410 MtrunA17_Chr2g0283131 53.304 227 95 4 1 227 1 216 5.89e-79 236
Msa1320410 MtrunA17_Chr2g0276941 60.556 180 71 0 8 187 7 186 1.57e-78 235
Msa1320410 MtrunA17_Chr4g0040781 51.982 227 98 4 1 227 1 216 5.77e-78 233
Msa1320410 MtrunA17_Chr7g0234201 55.814 215 82 3 15 227 12 215 1.29e-77 233
Msa1320410 MtrunA17_Chr8g0346421 53.456 217 94 3 10 225 20 230 2.93e-77 232
Msa1320410 MtrunA17_Chr2g0325091 60.773 181 70 1 6 186 2 181 3.99e-76 229
Msa1320410 MtrunA17_Chr7g0275991 52.995 217 95 3 11 225 15 226 7.90e-76 228
Msa1320410 MtrunA17_Chr1g0189361 51.402 214 102 1 14 227 12 223 2.28e-75 227
Msa1320410 MtrunA17_Chr6g0482721 50.679 221 93 4 11 227 7 215 3.09e-67 206
Msa1320410 MtrunA17_Chr8g0392931 48.585 212 100 2 11 216 9 217 4.05e-61 191
Msa1320410 MtrunA17_Chr2g0290891 51.829 164 79 0 15 178 5 168 8.11e-58 182
Msa1320410 MtrunA17_Chr8g0335471 43.458 214 104 3 14 227 6 202 2.41e-57 181
Msa1320410 MtrunA17_Chr6g0458081 51.220 164 80 0 14 177 4 167 1.43e-56 179
Msa1320410 MtrunA17_Chr7g0250531 44.393 214 101 3 14 227 6 201 2.67e-56 178
Msa1320410 MtrunA17_Chr4g0055651 49.123 171 87 0 14 184 6 176 5.66e-56 177
Msa1320410 MtrunA17_Chr8g0349711 51.829 164 79 0 15 178 5 168 1.52e-55 176
Msa1320410 MtrunA17_Chr8g0349681 52.023 173 83 0 6 178 374 546 1.71e-53 181
Msa1320410 MtrunA17_Chr8g0349681 51.220 164 80 0 15 178 174 337 2.38e-50 172
Msa1320410 MtrunA17_Chr8g0349681 51.282 156 76 0 15 170 12 167 1.16e-47 165
Msa1320410 MtrunA17_Chr2g0276931 39.906 213 111 1 14 226 7 202 8.39e-50 161
Msa1320410 MtrunA17_Chr1g0182321 41.667 204 115 2 14 216 13 213 1.26e-49 161
Msa1320410 MtrunA17_Chr1g0199331 48.701 154 78 1 18 170 33 186 1.61e-49 160
Msa1320410 MtrunA17_Chr1g0212521 40.930 215 112 3 14 226 13 214 3.54e-49 160
Msa1320410 MtrunA17_Chr1g0182301 41.176 204 116 2 14 216 13 213 3.93e-49 160
Msa1320410 MtrunA17_Chr7g0263071 47.879 165 85 1 14 177 13 177 5.81e-49 159
Msa1320410 MtrunA17_Chr4g0030911 47.879 165 85 1 14 177 13 177 8.00e-49 159
Msa1320410 MtrunA17_Chr3g0109721 45.098 153 84 0 18 170 12 164 6.80e-46 151
Msa1320410 MtrunA17_Chr5g0433561 45.098 153 84 0 18 170 12 164 2.34e-45 150
Msa1320410 MtrunA17_Chr1g0159481 41.667 216 108 6 14 227 15 214 7.75e-44 146
Msa1320410 MtrunA17_Chr8g0384311 43.316 187 103 3 10 194 7 192 9.68e-44 146
Msa1320410 MtrunA17_Chr3g0123971 38.509 161 99 0 17 177 10 170 2.17e-43 145
Msa1320410 MtrunA17_Chr8g0382221 39.130 161 98 0 17 177 10 170 2.36e-43 145
Msa1320410 MtrunA17_Chr2g0327911 43.976 166 91 2 14 177 13 178 3.58e-43 144
Msa1320410 MtrunA17_Chr8g0390561 35.238 210 114 3 18 227 11 198 1.88e-42 142
Msa1320410 MtrunA17_Chr7g0265001 41.204 216 110 4 14 227 14 214 4.81e-42 142
Msa1320410 MtrunA17_Chr5g0400131 38.961 154 94 0 17 170 10 163 9.31e-41 138
Msa1320410 MtrunA17_Chr3g0130271 43.784 185 100 4 13 194 9 192 1.66e-40 137
Msa1320410 MtrunA17_Chr1g0201121 42.331 163 87 3 16 171 8 170 1.04e-39 135
Msa1320410 MtrunA17_Chr4g0055081 38.312 154 95 0 17 170 10 163 1.19e-39 135
Msa1320410 MtrunA17_Chr6g0466301 42.331 163 87 3 16 171 8 170 4.15e-39 134
Msa1320410 MtrunA17_Chr6g0465491 42.331 163 87 3 16 171 8 170 4.15e-39 134
Msa1320410 MtrunA17_Chr8g0383261 41.718 163 88 3 16 171 12 174 1.25e-38 133
Msa1320410 MtrunA17_Chr1g0180291 45.283 159 84 3 14 170 12 169 1.73e-38 132
Msa1320410 MtrunA17_Chr4g0034871 41.975 162 87 4 16 170 8 169 9.31e-38 130
Msa1320410 MtrunA17_Chr1g0197331 45.509 167 88 3 14 177 13 179 9.54e-38 130
Msa1320410 MtrunA17_Chr2g0331691 41.975 162 87 3 16 170 10 171 6.63e-37 128
Msa1320410 MtrunA17_Chr4g0004661 41.975 162 87 3 16 170 64 225 8.19e-36 127
Msa1320410 MtrunA17_Chr6g0466161 37.838 148 85 4 33 173 7 154 4.68e-25 97.8
Msa1320410 MtrunA17_Chr6g0465471 37.838 148 85 4 33 173 7 154 5.32e-25 97.8
Msa1320410 MtrunA17_Chr3g0138121 31.765 170 112 4 9 177 5 171 3.01e-24 96.3
Msa1320410 MtrunA17_Chr3g0138111 31.765 170 112 4 9 177 5 171 3.42e-24 95.9
Msa1320410 MtrunA17_Chr3g0138101 31.765 170 112 4 9 177 5 171 3.49e-24 95.9
Msa1320410 MtrunA17_Chr3g0117931 30.769 182 112 5 16 185 8 187 7.33e-20 84.3
Msa1320410 MtrunA17_Chr6g0486041 29.474 190 120 5 16 193 6 193 7.61e-19 81.6
Msa1320410 MtrunA17_Chr4g0046211 33.594 128 82 3 16 142 6 131 1.11e-17 77.0
Msa1320410 MtrunA17_Chr2g0325101 29.940 167 103 5 16 170 6 170 1.80e-17 77.4
Msa1320410 MtrunA17_Chr4g0037021 29.940 167 103 5 16 170 6 170 4.71e-17 76.6
Msa1320410 MtrunA17_Chr6g0466431 35.922 103 57 1 16 118 8 101 9.22e-17 73.2
Msa1320410 MtrunA17_Chr6g0465611 35.922 103 57 1 16 118 8 101 9.22e-17 73.2
Msa1320410 MtrunA17_Chr5g0405791 28.994 169 102 5 16 170 6 170 1.48e-16 75.1
Msa1320410 MtrunA17_Chr8g0371501 32.773 119 77 3 16 133 6 122 2.26e-15 72.0
Msa1320410 MtrunA17_Chr1g0178291 31.210 157 101 3 21 177 433 582 1.05e-11 63.9
Msa1320410 MtrunA17_Chr2g0331841 44.828 58 32 0 85 142 2 59 1.28e-11 59.3
Msa1320410 MtrunA17_Chr5g0443631 23.353 167 122 2 17 178 105 270 5.63e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1320410 AT5G47960.1 55.752 226 94 3 1 226 1 220 1.18e-92 271
Msa1320410 AT3G12160.1 56.637 226 91 3 1 226 1 219 6.58e-92 269
Msa1320410 AT4G39990.1 55.300 217 87 3 13 227 14 222 7.45e-85 251
Msa1320410 AT2G43130.1 53.982 226 84 3 7 227 3 213 3.47e-83 247
Msa1320410 AT5G65270.1 53.953 215 97 1 13 227 14 226 3.85e-83 247
Msa1320410 AT1G07410.1 54.751 221 89 3 8 228 5 214 5.45e-82 244
Msa1320410 AT4G18800.1 54.626 227 89 3 1 227 1 213 1.79e-81 243
Msa1320410 AT1G09630.1 55.300 217 89 3 11 227 7 215 5.12e-81 241
Msa1320410 AT1G16920.1 54.626 227 91 4 1 227 1 215 1.74e-80 240
Msa1320410 AT4G18430.1 57.368 190 78 1 1 190 1 187 4.36e-80 239
Msa1320410 AT5G45750.1 52.863 227 95 3 1 227 1 215 1.20e-79 238
Msa1320410 AT5G60860.1 52.863 227 96 3 1 227 1 216 1.43e-79 238
Msa1320410 AT3G15060.1 52.423 227 97 3 1 227 1 216 6.25e-79 236
Msa1320410 AT1G06400.1 51.515 231 92 3 1 227 1 215 1.01e-78 236
Msa1320410 AT2G31680.1 52.968 219 97 2 9 227 5 217 1.48e-78 235
Msa1320410 AT1G05810.1 52.273 220 97 2 9 227 4 216 2.03e-78 235
Msa1320410 AT1G05810.2 52.273 220 97 2 9 227 50 262 7.39e-78 235
Msa1320410 AT3G46830.1 62.573 171 64 0 14 184 10 180 1.33e-77 233
Msa1320410 AT3G46830.2 62.573 171 64 0 14 184 10 180 1.33e-77 233
Msa1320410 AT5G47520.1 52.511 219 99 3 9 227 7 220 5.15e-77 231
Msa1320410 AT5G59150.1 61.988 171 65 0 14 184 10 180 9.08e-77 231
Msa1320410 AT2G33870.1 50.220 227 103 3 1 227 1 217 1.89e-76 230
Msa1320410 AT1G28550.1 57.447 188 77 1 1 188 1 185 2.62e-76 229
Msa1320410 AT3G07410.1 50.000 222 104 1 6 227 2 216 2.15e-75 227
Msa1320410 AT1G01200.1 50.685 219 98 4 11 225 23 235 6.17e-72 219
Msa1320410 AT1G18200.1 56.452 186 76 1 11 191 8 193 3.08e-70 214
Msa1320410 AT1G73640.1 56.742 178 77 0 7 184 4 181 5.13e-68 209
Msa1320410 AT4G17170.1 51.829 164 79 0 15 178 5 168 1.52e-57 182
Msa1320410 AT4G35860.1 51.829 164 79 0 14 177 4 167 2.35e-57 181
Msa1320410 AT4G17160.1 51.220 164 80 0 15 178 5 168 2.27e-56 178
Msa1320410 AT5G47200.1 48.538 171 88 0 14 184 6 176 9.70e-56 177
Msa1320410 AT4G17530.1 48.538 171 88 0 14 184 6 176 1.13e-55 176
Msa1320410 AT1G02130.1 42.056 214 107 3 14 227 6 202 4.25e-55 175
Msa1320410 AT3G11730.1 45.614 171 93 0 14 184 6 176 4.80e-51 165
Msa1320410 AT5G59150.2 59.055 127 52 0 58 184 3 129 6.73e-51 163
Msa1320410 AT5G59840.1 41.121 214 113 3 14 226 13 214 5.20e-49 160
Msa1320410 AT3G53610.2 41.121 214 113 3 14 226 13 214 9.53e-49 159
Msa1320410 AT3G53610.3 41.121 214 113 3 14 226 13 214 9.53e-49 159
Msa1320410 AT3G53610.1 41.121 214 113 3 14 226 13 214 9.53e-49 159
Msa1320410 AT3G46060.2 48.447 161 82 1 14 173 13 173 1.89e-48 159
Msa1320410 AT3G46060.3 48.447 161 82 1 14 173 13 173 1.89e-48 159
Msa1320410 AT3G46060.1 48.447 161 82 1 14 173 13 173 1.89e-48 159
Msa1320410 AT3G54840.1 48.701 154 78 1 18 170 35 188 3.89e-48 157
Msa1320410 AT3G54840.2 48.701 154 78 1 18 170 35 188 4.74e-48 157
Msa1320410 AT3G54840.3 48.366 153 78 1 19 170 2 154 8.91e-48 155
Msa1320410 AT3G09900.1 40.278 216 115 3 14 227 13 216 1.70e-47 156
Msa1320410 AT5G03520.1 41.204 216 111 4 14 227 13 214 2.27e-47 156
Msa1320410 AT4G19640.1 43.137 153 87 0 18 170 12 164 1.16e-44 148
Msa1320410 AT5G45130.1 43.791 153 86 0 18 170 12 164 5.73e-44 147
Msa1320410 AT4G39890.1 40.645 155 91 1 17 170 10 164 2.29e-43 145
Msa1320410 AT1G43890.3 44.149 188 102 3 14 199 11 197 4.22e-43 145
Msa1320410 AT1G43890.1 44.149 188 102 3 14 199 11 197 4.22e-43 145
Msa1320410 AT1G43890.2 44.149 188 102 3 14 199 11 197 4.22e-43 145
Msa1320410 AT5G10260.1 39.610 154 93 0 17 170 10 163 4.26e-43 144
Msa1320410 AT2G22290.1 40.260 154 92 0 17 170 10 163 4.26e-43 144
Msa1320410 AT5G45130.2 43.709 151 85 0 20 170 22 172 6.06e-43 144
Msa1320410 AT2G44610.1 40.909 154 91 0 17 170 10 163 2.87e-42 142
Msa1320410 AT4G35860.2 52.500 120 57 0 58 177 2 121 5.44e-42 140
Msa1320410 AT4G09720.1 38.647 207 106 6 16 215 8 200 2.90e-40 137
Msa1320410 AT5G64990.1 37.267 161 101 0 17 177 8 168 2.99e-40 137
Msa1320410 AT5G03530.2 39.545 220 115 5 10 227 7 210 9.11e-40 136
Msa1320410 AT5G03530.1 39.545 220 115 5 10 227 7 210 9.11e-40 136
Msa1320410 AT4G09720.4 37.736 212 106 6 16 215 8 205 1.59e-39 135
Msa1320410 AT1G22740.1 40.606 165 91 3 16 173 8 172 1.53e-38 133
Msa1320410 AT4G09720.3 36.697 218 106 6 16 215 8 211 1.83e-38 133
Msa1320410 AT1G52280.1 41.975 162 87 3 16 170 8 169 3.65e-38 132
Msa1320410 AT3G18820.1 42.593 162 86 3 16 170 8 169 6.32e-38 131
Msa1320410 AT1G49300.2 41.317 167 91 3 16 175 8 174 1.01e-37 130
Msa1320410 AT1G49300.1 41.317 167 91 3 16 175 8 174 1.01e-37 130
Msa1320410 AT5G64990.2 35.714 168 101 1 17 177 8 175 1.47e-37 130
Msa1320410 AT3G16100.1 41.358 162 88 3 16 170 8 169 4.02e-37 129
Msa1320410 AT2G21880.1 40.000 165 92 3 16 173 9 173 9.26e-36 126
Msa1320410 AT4G19640.2 42.857 126 72 0 18 143 12 137 1.85e-35 123
Msa1320410 AT5G03520.2 38.547 179 94 4 51 227 40 204 3.22e-35 124
Msa1320410 AT4G19640.3 36.158 177 107 2 18 189 12 187 3.63e-35 124
Msa1320410 AT3G09910.3 43.558 163 89 3 10 170 7 168 3.45e-31 114
Msa1320410 AT3G09910.1 43.558 163 89 3 10 170 7 168 3.45e-31 114
Msa1320410 AT3G09910.2 43.558 163 89 3 10 170 7 168 3.45e-31 114
Msa1320410 AT3G09910.5 43.558 163 89 3 10 170 7 168 4.41e-31 113
Msa1320410 AT3G09910.4 43.558 163 89 3 10 170 7 168 4.41e-31 113
Msa1320410 AT5G39620.1 34.722 216 117 7 17 225 6 204 2.48e-30 112
Msa1320410 AT5G46025.1 52.941 102 47 1 78 178 6 107 5.04e-29 105
Msa1320410 AT5G55080.1 34.161 161 103 3 17 177 14 171 1.23e-28 108
Msa1320410 AT4G09720.6 37.222 180 92 6 43 215 1 166 1.28e-28 106
Msa1320410 AT4G09720.5 37.222 180 92 6 43 215 1 166 1.28e-28 106
Msa1320410 AT4G09720.2 37.222 180 92 6 43 215 1 166 1.28e-28 106
Msa1320410 AT2G21880.4 37.838 148 85 3 33 173 1 148 3.63e-27 103
Msa1320410 AT2G21880.3 37.838 148 85 3 33 173 1 148 3.63e-27 103
Msa1320410 AT2G21880.2 35.152 165 92 4 16 173 9 165 6.88e-26 100
Msa1320410 AT5G20020.1 31.765 170 112 4 9 177 5 171 4.87e-24 95.9
Msa1320410 AT5G20010.1 31.765 170 112 4 9 177 5 171 5.35e-24 95.9
Msa1320410 AT5G55190.1 31.765 170 112 4 9 177 5 171 5.64e-24 95.9
Msa1320410 AT2G44690.1 34.132 167 96 5 16 170 18 182 9.70e-21 87.0
Msa1320410 AT4G35020.1 30.539 167 102 5 16 170 6 170 1.03e-17 78.6
Msa1320410 AT4G35020.2 30.539 167 102 5 16 170 6 170 1.03e-17 78.6
Msa1320410 AT4G35020.3 30.539 167 102 5 16 170 6 170 1.03e-17 78.6
Msa1320410 AT3G48040.1 29.940 167 103 5 16 170 8 172 2.07e-17 78.2
Msa1320410 AT4G28950.1 30.909 165 102 5 16 170 6 168 2.32e-17 77.8
Msa1320410 AT5G62880.1 30.539 167 102 5 16 170 8 172 3.05e-17 77.8
Msa1320410 AT5G45970.1 30.539 167 102 5 16 170 6 170 3.78e-17 77.0
Msa1320410 AT3G51300.1 29.697 165 102 5 18 170 8 170 1.19e-16 75.9
Msa1320410 AT1G20090.1 29.341 167 104 5 16 170 5 169 1.33e-16 75.5
Msa1320410 AT1G75840.1 28.743 167 105 5 16 170 6 170 2.44e-16 74.7
Msa1320410 AT5G62880.2 30.968 155 93 5 18 160 10 162 3.99e-16 74.3
Msa1320410 AT3G48040.2 30.968 155 93 5 18 160 10 162 5.44e-16 73.6
Msa1320410 AT4G35950.1 30.178 169 100 5 16 170 6 170 1.16e-15 73.2
Msa1320410 AT2G17800.2 28.743 167 105 5 16 170 6 170 2.29e-15 72.4
Msa1320410 AT2G17800.1 28.743 167 105 5 16 170 6 170 2.29e-15 72.4
Msa1320410 AT4G35020.4 33.333 114 73 3 18 130 8 119 4.99e-15 70.1
Msa1320410 AT4G35020.5 33.333 114 73 3 18 130 8 119 4.99e-15 70.1
Msa1320410 AT4G08190.1 48.438 64 30 1 107 170 67 127 1.01e-13 66.2

Find 52 sgRNAs with CRISPR-Local

Find 129 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATGAATAAACAGTTATTT+TGG 0.170688 8_4:-24861638 Msa1320410:three_prime_UTR
CAGATGGACATGAACGAAAT+TGG 0.196371 8_4:-24861941 Msa1320410:CDS
TTTGACCAAGACTGTTCTTA+TGG 0.268890 8_4:-24863556 Msa1320410:CDS
TGTGGTTGATGAGGCAATTT+TGG 0.269904 8_4:+24863914 None:intergenic
ATTTGAGGGAACAAAATTAT+TGG 0.279920 8_4:-24861901 Msa1320410:CDS
GGCTCAGTTTCAAGGTGATT+TGG 0.287683 8_4:-24863712 Msa1320410:CDS
GCTTGTCAAGGCTCAGATTT+GGG 0.360973 8_4:-24863526 Msa1320410:CDS
AGCTTGTCAAGGCTCAGATT+TGG 0.364225 8_4:-24863527 Msa1320410:CDS
AAACGTACGAGGAAGGATTA+AGG 0.368191 8_4:+24864050 None:intergenic
CTTCCTCGATAGACACTTCT+CGG 0.370135 8_4:+24862096 None:intergenic
AACATAGCTGTCATGCTTGT+TGG 0.371700 8_4:-24862143 Msa1320410:CDS
TCATTGAAAGCGTTCTTGTT+AGG 0.381555 8_4:+24863991 None:intergenic
TTGAAATCTAAAGCTACAAT+TGG 0.411996 8_4:-24863588 Msa1320410:CDS
TTTCAATATGGTTGAAGGTA+TGG 0.432363 8_4:+24862201 None:intergenic
ATGTTCAAGGTTGTTATGAT+TGG 0.440532 8_4:-24863669 Msa1320410:CDS
GGGTATTGATTATATGTTCA+AGG 0.446874 8_4:-24863682 Msa1320410:CDS
GCATATTACAGAGGTGCAAC+TGG 0.448807 8_4:-24862254 Msa1320410:CDS
AATGTAGAACCAGCTTTCCT+TGG 0.453949 8_4:-24862011 Msa1320410:CDS
TAAAGTAAATCTTGAATTTG+AGG 0.472846 8_4:-24861916 Msa1320410:CDS
ATATACATAATCAATAGAAC+AGG 0.475484 8_4:+24861799 None:intergenic
AAGAGAATGGCTCAGTTTCA+AGG 0.475792 8_4:-24863720 Msa1320410:exon
AGATGGACATGAACGAAATT+GGG 0.476402 8_4:-24861940 Msa1320410:CDS
AAAGTAAATCTTGAATTTGA+GGG 0.497241 8_4:-24861915 Msa1320410:CDS
ATGGTTGAAGGTATGGCGCT+TGG 0.524601 8_4:+24862208 None:intergenic
CCTTCAACCATATTGAAAAG+TGG 0.524738 8_4:-24862196 Msa1320410:CDS
GAGAGAAGACCAAGGAAAGC+TGG 0.526036 8_4:+24862002 None:intergenic
ATGATCCATAAGAACAGTCT+TGG 0.534296 8_4:+24863551 None:intergenic
GGGATACTGCTGGTCAAGAA+AGG 0.539209 8_4:-24863506 Msa1320410:intron
ATGATTGGTGACTCTGGTGT+TGG 0.541897 8_4:-24863654 Msa1320410:CDS
TCAAGGTGATTTGGATCATG+AGG 0.547424 8_4:-24863703 Msa1320410:CDS
TGATAATGCAAAACCCACCT+TGG 0.548683 8_4:+24863783 None:intergenic
GTTGTTATGATTGGTGACTC+TGG 0.549166 8_4:-24863660 Msa1320410:CDS
AATATGCAGTTGTAATTGCT+TGG 0.550879 8_4:+24862270 None:intergenic
AAGAAACACATCACTGCAGA+TGG 0.556898 8_4:-24861957 Msa1320410:CDS
CATCAAACATTGAAGATCCA+AGG 0.561570 8_4:-24863800 Msa1320410:five_prime_UTR
GCTCAGATTTGGGATACTGC+TGG 0.571910 8_4:-24863516 Msa1320410:CDS
AGGAAAGAAACGTACGAGGA+AGG 0.576903 8_4:+24864043 None:intergenic
CAAGGTGATTTGGATCATGA+GGG 0.581854 8_4:-24863702 Msa1320410:CDS
TATGGATCATAAGCTTGTCA+AGG 0.590505 8_4:-24863538 Msa1320410:CDS
GAGAAAACGTGTGGTTGATG+AGG 0.591860 8_4:+24863905 None:intergenic
AAATAACATAGTAACTTCAA+AGG 0.603788 8_4:+24861696 None:intergenic
AAAGACTTAGCAAAACAGAA+AGG 0.614557 8_4:-24862071 Msa1320410:CDS
ACACTTCTCGGATTGAACTC+AGG 0.614810 8_4:+24862108 None:intergenic
AAACATTGAAGATCCAAGGT+GGG 0.619334 8_4:-24863796 Msa1320410:five_prime_UTR
GTAAGAGAAGAGAAAACGTG+TGG 0.659305 8_4:+24863896 None:intergenic
CAAACATTGAAGATCCAAGG+TGG 0.667974 8_4:-24863797 Msa1320410:five_prime_UTR
TATACATAATCAATAGAACA+GGG 0.693569 8_4:+24861800 None:intergenic
ATTACAACTGCATATTACAG+AGG 0.695575 8_4:-24862263 Msa1320410:CDS
AATCCGAGAAGTGTCTATCG+AGG 0.703255 8_4:-24862099 Msa1320410:CDS
AGAAAGGAAAGAAACGTACG+AGG 0.706477 8_4:+24864039 None:intergenic
ATACATAATCAATAGAACAG+GGG 0.718063 8_4:+24861801 None:intergenic
ATATTTGTGAGAGAAGACCA+AGG 0.791204 8_4:+24861994 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAATATAGTAAAAATGTT+TGG - chr8_4:24862329-24862348 Msa1320410:intron 10.0%
!! AAATTGACAAAAGAAAATTT+AGG + chr8_4:24862157-24862176 None:intergenic 15.0%
!!! AAAATGTGAATTATTTTCAT+TGG - chr8_4:24862194-24862213 Msa1320410:CDS 15.0%
!!! ATGTTATTTTATGTTGAATT+TGG - chr8_4:24862377-24862396 Msa1320410:intron 15.0%
!!! TAAAATCTTTTATTGACATT+GGG + chr8_4:24862406-24862425 None:intergenic 15.0%
!!! ATAAAATCTTTTATTGACAT+TGG + chr8_4:24862407-24862426 None:intergenic 15.0%
!!! TTGTTAGTTTATGTTAAATT+TGG - chr8_4:24862702-24862721 Msa1320410:intron 15.0%
!!! ATTTTAAATTTGATACATTC+AGG - chr8_4:24863185-24863204 Msa1320410:intron 15.0%
!!! TTTTAAATTTGATACATTCA+GGG - chr8_4:24863186-24863205 Msa1320410:intron 15.0%
!! AAATACATCAAAAATTTGAA+GGG + chr8_4:24863890-24863909 None:intergenic 15.0%
!! AAAATACATCAAAAATTTGA+AGG + chr8_4:24863891-24863910 None:intergenic 15.0%
!!! AATTTTTGATGTATTTTTCA+AGG - chr8_4:24863894-24863913 Msa1320410:five_prime_UTR 15.0%
!!! AAATGAATAAACAGTTATTT+TGG - chr8_4:24863998-24864017 Msa1320410:five_prime_UTR 15.0%
!!! ATTTGGTCTTTTTTTATGTT+AGG + chr8_4:24861809-24861828 None:intergenic 20.0%
!! ATGTTTGATGCATAAAAATT+TGG + chr8_4:24861826-24861845 None:intergenic 20.0%
!!! TAAAAGATTTTATGCTTTCA+CGG - chr8_4:24862414-24862433 Msa1320410:intron 20.0%
!!! TTTTTAAAGTTGATTTACCA+GGG - chr8_4:24862490-24862509 Msa1320410:intron 20.0%
!! TGTCACAAAATAAATGAATT+CGG + chr8_4:24862627-24862646 None:intergenic 20.0%
!! TGTTGCATCATAAATAAATT+TGG + chr8_4:24862919-24862938 None:intergenic 20.0%
!!! CAAACTTACAAATATTTTCA+CGG + chr8_4:24863058-24863077 None:intergenic 20.0%
!! TAAAGTAAATCTTGAATTTG+AGG - chr8_4:24863720-24863739 Msa1320410:exon 20.0%
!! AAAGTAAATCTTGAATTTGA+GGG - chr8_4:24863721-24863740 Msa1320410:exon 20.0%
!! TATACATAATCAATAGAACA+GGG + chr8_4:24863839-24863858 None:intergenic 20.0%
!! ATATACATAATCAATAGAAC+AGG + chr8_4:24863840-24863859 None:intergenic 20.0%
!!! ATTTTTCAAGGATAGTTATT+AGG - chr8_4:24863906-24863925 Msa1320410:five_prime_UTR 20.0%
!! AAATAACATAGTAACTTCAA+AGG + chr8_4:24863943-24863962 None:intergenic 20.0%
!!! AGTTACTATGTTATTTTGAT+TGG - chr8_4:24863947-24863966 Msa1320410:five_prime_UTR 20.0%
! AAAGAATGACAGAAAAAGAA+AGG + chr8_4:24861616-24861635 None:intergenic 25.0%
!! TTTTTGTGTTCTATAGAAAG+AGG + chr8_4:24861770-24861789 None:intergenic 25.0%
!! TATCACATTCAGTTTTCAAA+AGG - chr8_4:24861871-24861890 Msa1320410:CDS 25.0%
!! ATCACATTCAGTTTTCAAAA+GGG - chr8_4:24861872-24861891 Msa1320410:CDS 25.0%
! AATCACATAGAAAAAGAGAA+TGG - chr8_4:24861903-24861922 Msa1320410:CDS 25.0%
!! TTGAAATCTAAAGCTACAAT+TGG - chr8_4:24862048-24862067 Msa1320410:CDS 25.0%
!!! GTTTTTAAAGTTGATTTACC+AGG - chr8_4:24862489-24862508 Msa1320410:intron 25.0%
!!! TCATTTATTTTGTGACATAG+TGG - chr8_4:24862630-24862649 Msa1320410:intron 25.0%
!!! CATTTATTTTGTGACATAGT+GGG - chr8_4:24862631-24862650 Msa1320410:intron 25.0%
! AATTGTTCTAATTTCAAGCT+TGG + chr8_4:24862808-24862827 None:intergenic 25.0%
! TTCATAAGCAAACTCAAAAT+TGG - chr8_4:24862827-24862846 Msa1320410:intron 25.0%
! AAACACATTATCATGTCAAT+TGG + chr8_4:24862977-24862996 None:intergenic 25.0%
! CGTGAAAATATTTGTAAGTT+TGG - chr8_4:24863056-24863075 Msa1320410:intron 25.0%
! ATTTGAGGGAACAAAATTAT+TGG - chr8_4:24863735-24863754 Msa1320410:exon 25.0%
! ATACATAATCAATAGAACAG+GGG + chr8_4:24863838-24863857 None:intergenic 25.0%
! AATTTGAAGGGCAAAAAATA+TGG + chr8_4:24863878-24863897 None:intergenic 25.0%
!!! TTTTGGTTCATAAATTTGTG+AGG - chr8_4:24864015-24864034 Msa1320410:five_prime_UTR 25.0%
!! GGGTATTGATTATATGTTCA+AGG - chr8_4:24861954-24861973 Msa1320410:CDS 30.0%
ATGTTCAAGGTTGTTATGAT+TGG - chr8_4:24861967-24861986 Msa1320410:CDS 30.0%
! GAAAATCTCAGCTTTTGAAT+AGG - chr8_4:24862004-24862023 Msa1320410:CDS 30.0%
!!! TGCTTTTGAGTTTGATCATA+AGG + chr8_4:24862531-24862550 None:intergenic 30.0%
TTATTTATGATGCAACACAG+TGG - chr8_4:24862922-24862941 Msa1320410:intron 30.0%
TATTTATGATGCAACACAGT+GGG - chr8_4:24862923-24862942 Msa1320410:intron 30.0%
ACTAACAAAAGACACATTTG+AGG + chr8_4:24863115-24863134 None:intergenic 30.0%
CGATTCTGTTAGTAATTCAA+TGG + chr8_4:24863147-24863166 None:intergenic 30.0%
AATTACTAACAGAATCGACT+TGG - chr8_4:24863150-24863169 Msa1320410:intron 30.0%
! ATTACTAACAGAATCGACTT+GGG - chr8_4:24863151-24863170 Msa1320410:intron 30.0%
! ACACGAGTAAACATCATTTT+GGG + chr8_4:24863243-24863262 None:intergenic 30.0%
! AACACGAGTAAACATCATTT+TGG + chr8_4:24863244-24863263 None:intergenic 30.0%
GACATGCATAATGTATTTGA+AGG + chr8_4:24863304-24863323 None:intergenic 30.0%
AATATGCAGTTGTAATTGCT+TGG + chr8_4:24863369-24863388 None:intergenic 30.0%
ATTACAACTGCATATTACAG+AGG - chr8_4:24863373-24863392 Msa1320410:intron 30.0%
TTTCAATATGGTTGAAGGTA+TGG + chr8_4:24863438-24863457 None:intergenic 30.0%
! TTTCTGTTTTGCTAAGTCTT+TGG + chr8_4:24863566-24863585 None:intergenic 30.0%
AAAGACTTAGCAAAACAGAA+AGG - chr8_4:24863565-24863584 Msa1320410:CDS 30.0%
! TTTTTGGATTTTTGACACTC+TGG + chr8_4:24863775-24863794 None:intergenic 30.0%
!! TCATTGAAAGCGTTCTTGTT+AGG + chr8_4:24861648-24861667 None:intergenic 35.0%
CATCAAACATTGAAGATCCA+AGG - chr8_4:24861836-24861855 Msa1320410:CDS 35.0%
AAACATTGAAGATCCAAGGT+GGG - chr8_4:24861840-24861859 Msa1320410:CDS 35.0%
TTTGACCAAGACTGTTCTTA+TGG - chr8_4:24862080-24862099 Msa1320410:CDS 35.0%
ATGATCCATAAGAACAGTCT+TGG + chr8_4:24862088-24862107 None:intergenic 35.0%
TATGGATCATAAGCTTGTCA+AGG - chr8_4:24862098-24862117 Msa1320410:CDS 35.0%
!! TTTGGAAGTTGATGACTTCT+TGG - chr8_4:24862347-24862366 Msa1320410:intron 35.0%
!! GGTTGTTCAAATTTTAACCC+TGG + chr8_4:24862510-24862529 None:intergenic 35.0%
GTCATCTAATCTTGATGCAA+CGG - chr8_4:24862553-24862572 Msa1320410:intron 35.0%
CTATGCAATCTTTGACAGTA+GGG + chr8_4:24862731-24862750 None:intergenic 35.0%
TCTATGCAATCTTTGACAGT+AGG + chr8_4:24862732-24862751 None:intergenic 35.0%
! GAGTCGCAATTCAAAGTTTT+TGG + chr8_4:24862870-24862889 None:intergenic 35.0%
ATTTATGATGCAACACAGTG+GGG - chr8_4:24862924-24862943 Msa1320410:intron 35.0%
! TTTTGATCCATAAGTACGTG+TGG - chr8_4:24863017-24863036 Msa1320410:intron 35.0%
CTAACTAACAAGAGACACAT+TGG + chr8_4:24863086-24863105 None:intergenic 35.0%
!! TTACTAACAGAATCGACTTG+GGG - chr8_4:24863152-24863171 Msa1320410:intron 35.0%
!! CCACTTTTCAATATGGTTGA+AGG + chr8_4:24863443-24863462 None:intergenic 35.0%
CCTTCAACCATATTGAAAAG+TGG - chr8_4:24863440-24863459 Msa1320410:intron 35.0%
!!! CATCTAGCCACTTTTCAATA+TGG + chr8_4:24863450-24863469 None:intergenic 35.0%
!! CAGCTATGTTTTTATCTGCA+TGG + chr8_4:24863483-24863502 None:intergenic 35.0%
ATATTTGTGAGAGAAGACCA+AGG + chr8_4:24863645-24863664 None:intergenic 35.0%
AGATGGACATGAACGAAATT+GGG - chr8_4:24863696-24863715 Msa1320410:CDS 35.0%
! GCAACAACTGAATCTCTTTT+TGG + chr8_4:24863791-24863810 None:intergenic 35.0%
AAACGTACGAGGAAGGATTA+AGG + chr8_4:24861589-24861608 None:intergenic 40.0%
AGAAAGGAAAGAAACGTACG+AGG + chr8_4:24861600-24861619 None:intergenic 40.0%
!!! TGTGGTTGATGAGGCAATTT+TGG + chr8_4:24861725-24861744 None:intergenic 40.0%
GTAAGAGAAGAGAAAACGTG+TGG + chr8_4:24861743-24861762 None:intergenic 40.0%
CAAACATTGAAGATCCAAGG+TGG - chr8_4:24861839-24861858 Msa1320410:CDS 40.0%
! TGATAATGCAAAACCCACCT+TGG + chr8_4:24861856-24861875 None:intergenic 40.0%
AAGAGAATGGCTCAGTTTCA+AGG - chr8_4:24861916-24861935 Msa1320410:CDS 40.0%
! TCAAGGTGATTTGGATCATG+AGG - chr8_4:24861933-24861952 Msa1320410:CDS 40.0%
! CAAGGTGATTTGGATCATGA+GGG - chr8_4:24861934-24861953 Msa1320410:CDS 40.0%
! GTTGTTATGATTGGTGACTC+TGG - chr8_4:24861976-24861995 Msa1320410:CDS 40.0%
TTATGCTTTCACGGAGTCAA+CGG - chr8_4:24862423-24862442 Msa1320410:intron 40.0%
TAGAGCCGATCAAGATTTGA+TGG - chr8_4:24862450-24862469 Msa1320410:intron 40.0%
CAGAGCCATCAAATCTTGAT+CGG + chr8_4:24862458-24862477 None:intergenic 40.0%
AGCTTGGAATCAAAGTCATC+CGG + chr8_4:24862792-24862811 None:intergenic 40.0%
TTTATGATGCAACACAGTGG+GGG - chr8_4:24862925-24862944 Msa1320410:intron 40.0%
GACAATGCCTCACACATTTA+TGG - chr8_4:24863217-24863236 Msa1320410:intron 40.0%
! TTTTGGGCCATAAATGTGTG+AGG + chr8_4:24863227-24863246 None:intergenic 40.0%
ATAATGTTGCCATTCGTGAC+AGG - chr8_4:24863341-24863360 Msa1320410:intron 40.0%
AACATAGCTGTCATGCTTGT+TGG - chr8_4:24863493-24863512 Msa1320410:intron 40.0%
AATGTAGAACCAGCTTTCCT+TGG - chr8_4:24863625-24863644 Msa1320410:CDS 40.0%
AAGAAACACATCACTGCAGA+TGG - chr8_4:24863679-24863698 Msa1320410:CDS 40.0%
CAGATGGACATGAACGAAAT+TGG - chr8_4:24863695-24863714 Msa1320410:CDS 40.0%
AGGAAAGAAACGTACGAGGA+AGG + chr8_4:24861596-24861615 None:intergenic 45.0%
! GAGAAAACGTGTGGTTGATG+AGG + chr8_4:24861734-24861753 None:intergenic 45.0%
GGCTCAGTTTCAAGGTGATT+TGG - chr8_4:24861924-24861943 Msa1320410:CDS 45.0%
! ATGATTGGTGACTCTGGTGT+TGG - chr8_4:24861982-24862001 Msa1320410:CDS 45.0%
AGCTTGTCAAGGCTCAGATT+TGG - chr8_4:24862109-24862128 Msa1320410:CDS 45.0%
GCTTGTCAAGGCTCAGATTT+GGG - chr8_4:24862110-24862129 Msa1320410:CDS 45.0%
GATTCACAGTGTTAGCAGCT+TGG - chr8_4:24862750-24862769 Msa1320410:intron 45.0%
GACAATGCCACACGTACTTA+TGG + chr8_4:24863027-24863046 None:intergenic 45.0%
! GCATATTACAGAGGTGCAAC+TGG - chr8_4:24863382-24863401 Msa1320410:intron 45.0%
ACACTTCTCGGATTGAACTC+AGG + chr8_4:24863531-24863550 None:intergenic 45.0%
!! AATCCGAGAAGTGTCTATCG+AGG - chr8_4:24863537-24863556 Msa1320410:CDS 45.0%
CTTCCTCGATAGACACTTCT+CGG + chr8_4:24863543-24863562 None:intergenic 45.0%
!!! TAAAATTTTATTATTTTATG+TGG - chr8_4:24862236-24862255 Msa1320410:CDS 5.0%
! GCTCAGATTTGGGATACTGC+TGG - chr8_4:24862120-24862139 Msa1320410:CDS 50.0%
GGGATACTGCTGGTCAAGAA+AGG - chr8_4:24862130-24862149 Msa1320410:CDS 50.0%
TGTTAGCAGCTTGGAGCCAT+TGG - chr8_4:24862759-24862778 Msa1320410:intron 50.0%
TGGAGCCATTGGATCGATAC+CGG - chr8_4:24862770-24862789 Msa1320410:intron 50.0%
!! GTCATCCGGTATCGATCCAA+TGG + chr8_4:24862778-24862797 None:intergenic 50.0%
TGCTTGGTACCTGTCACGAA+TGG + chr8_4:24863353-24863372 None:intergenic 50.0%
! ATGGTTGAAGGTATGGCGCT+TGG + chr8_4:24863431-24863450 None:intergenic 50.0%
GAGAGAAGACCAAGGAAAGC+TGG + chr8_4:24863637-24863656 None:intergenic 50.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 24861562 24864096 24861562 ID=Msa1320410;Name=Msa1320410
chr8_4 mRNA 24861562 24864096 24861562 ID=Msa1320410-mRNA-1;Parent=Msa1320410;Name=Msa1320410-mRNA-1;_AED=0.03;_eAED=0.03;_QI=360|1|1|1|0|0|2|274|229
chr8_4 exon 24861562 24862295 24861562 ID=Msa1320410-mRNA-1:exon:8516;Parent=Msa1320410-mRNA-1
chr8_4 exon 24863507 24864096 24863507 ID=Msa1320410-mRNA-1:exon:8515;Parent=Msa1320410-mRNA-1
chr8_4 five_prime_UTR 24863737 24864096 24863737 ID=Msa1320410-mRNA-1:five_prime_utr;Parent=Msa1320410-mRNA-1
chr8_4 CDS 24863507 24863736 24863507 ID=Msa1320410-mRNA-1:cds;Parent=Msa1320410-mRNA-1
chr8_4 CDS 24861836 24862295 24861836 ID=Msa1320410-mRNA-1:cds;Parent=Msa1320410-mRNA-1
chr8_4 three_prime_UTR 24861562 24861835 24861562 ID=Msa1320410-mRNA-1:three_prime_utr;Parent=Msa1320410-mRNA-1
Gene Sequence

>Msa1320410

ATGGCTCAGTTTCAAGGTGATTTGGATCATGAGGGTATTGATTATATGTTCAAGGTTGTTATGATTGGTGACTCTGGTGTTGGAAAATCTCAGCTTTTGAATAGGTTTGTTAGAAATGAGTTTCATTTGAAATCTAAAGCTACAATTGGTGTTGAGTTTTTGACCAAGACTGTTCTTATGGATCATAAGCTTGTCAAGGCTCAGATTTGGGATACTGCTGGTCAAGAAAGGTACCAAGCAATTACAACTGCATATTACAGAGGTGCAACTGGTGCATTGCTCACATATGACATAACCAAGCGCCATACCTTCAACCATATTGAAAAGTGGCTAGATGAACTACATAACCATGCAGATAAAAACATAGCTGTCATGCTTGTTGGCAACAAGTCTGACCTGAGTTCAATCCGAGAAGTGTCTATCGAGGAAGCCAAAGACTTAGCAAAACAGAAAGGTCTCTACTTCATTGAGACATCAGCACTCGACTCAAGCAATGTAGAACCAGCTTTCCTTGGTCTTCTCTCACAAATATATGTAACAATGAGTAAGAAACACATCACTGCAGATGGACATGAACGAAATTGGGATAAAGTAAATCTTGAATTTGAGGGAACAAAATTATTGGTCTCGTCGCAAGAACCAGAGTGTCAAAAATCCAAAAAGAGATTCAGTTGTTGCAGTGTTTTTTAG

Protein sequence

>Msa1320410

MAQFQGDLDHEGIDYMFKVVMIGDSGVGKSQLLNRFVRNEFHLKSKATIGVEFLTKTVLMDHKLVKAQIWDTAGQERYQAITTAYYRGATGALLTYDITKRHTFNHIEKWLDELHNHADKNIAVMLVGNKSDLSSIREVSIEEAKDLAKQKGLYFIETSALDSSNVEPAFLGLLSQIYVTMSKKHITADGHERNWDKVNLEFEGTKLLVSSQEPECQKSKKRFSCCSVF*