Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1431260 | XP_003590397.1 | 80.645 | 279 | 20 | 3 | 1 | 247 | 220 | 496 | 1.26e-115 | 350 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1431260 | A7UQU9 | 80.645 | 279 | 20 | 3 | 1 | 247 | 220 | 496 | 6.03e-116 | 350 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0039750 | Msa1431260 | 0.806270 | 8.922739e-50 | -8.615850e-47 |
| Msa0077570 | Msa1431260 | -0.823981 | 1.033359e-53 | -8.615850e-47 |
| Msa1372000 | Msa1431260 | 0.803749 | 3.005433e-49 | -8.615850e-47 |
| Msa1387450 | Msa1431260 | -0.818885 | 1.551961e-52 | -8.615850e-47 |
| Msa1407840 | Msa1431260 | 0.805612 | 1.227518e-49 | -8.615850e-47 |
| Msa1431260 | Msa1437810 | 0.808017 | 3.808250e-50 | -8.615850e-47 |
| Msa1431260 | Msa1454500 | 0.809028 | 2.316168e-50 | -8.615850e-47 |
| Msa0685610 | Msa1431260 | 0.803055 | 4.183911e-49 | -8.615850e-47 |
| Msa0733080 | Msa1431260 | 0.826787 | 2.239276e-54 | -8.615850e-47 |
| Msa0765110 | Msa1431260 | 0.801165 | 1.023986e-48 | -8.615850e-47 |
| Msa0161960 | Msa1431260 | 0.892692 | 1.255791e-74 | -8.615850e-47 |
| Msa0227790 | Msa1431260 | 0.832987 | 6.906519e-56 | -8.615850e-47 |
| Msa0261460 | Msa1431260 | 0.805532 | 1.275527e-49 | -8.615850e-47 |
| Msa0261480 | Msa1431260 | 0.855512 | 6.002204e-62 | -8.615850e-47 |
| Msa0541880 | Msa1431260 | 0.814655 | 1.379437e-51 | -8.615850e-47 |
| Msa0541940 | Msa1431260 | 0.801013 | 1.100144e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1431260 | MtrunA17_Chr1g0179561 | 80.645 | 279 | 20 | 3 | 1 | 247 | 220 | 496 | 1.16e-119 | 350 |
| Msa1431260 | MtrunA17_Chr7g0265561 | 47.059 | 255 | 93 | 8 | 1 | 229 | 200 | 438 | 3.84e-37 | 135 |
| Msa1431260 | MtrunA17_Chr2g0328901 | 27.027 | 259 | 101 | 6 | 1 | 229 | 211 | 411 | 1.13e-16 | 78.6 |
| Msa1431260 | MtrunA17_Chr6g0463911 | 52.542 | 59 | 28 | 0 | 172 | 230 | 384 | 442 | 4.41e-13 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1431260 | AT3G10040.1 | 57.895 | 76 | 32 | 0 | 172 | 247 | 354 | 429 | 9.23e-22 | 93.6 |
| Msa1431260 | AT1G21200.1 | 46.875 | 64 | 34 | 0 | 167 | 230 | 376 | 439 | 8.48e-12 | 64.7 |
| Msa1431260 | AT1G21200.2 | 46.875 | 64 | 34 | 0 | 167 | 230 | 376 | 439 | 8.48e-12 | 64.7 |
Find 46 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAACTTCATCTTTCATCTT+AGG | 0.178877 | tig0026815:+7022 | None:intergenic |
| GGTTTGAGAATGTTGAAAAT+TGG | 0.321507 | tig0026815:-6752 | Msa1431260:CDS |
| TTCCACTTCCACCTTCTACT+TGG | 0.350671 | tig0026815:+6903 | None:intergenic |
| TTGAAAAGCAAAGGTTGAAA+TGG | 0.354388 | tig0026815:-6383 | Msa1431260:CDS |
| GAGAATGGTGTAGGGAGTTT+AGG | 0.360554 | tig0026815:-6791 | Msa1431260:CDS |
| CAGTTGGAGGAACAGAAAAT+AGG | 0.378255 | tig0026815:-6429 | Msa1431260:CDS |
| GATGAGGATGAAGGTGAATC+AGG | 0.392545 | tig0026815:-6668 | Msa1431260:CDS |
| AAGATTAGAAAATGAGAGAA+TGG | 0.405714 | tig0026815:-6298 | Msa1431260:CDS |
| CTAAGATGAAAGATGAAGTT+AGG | 0.406494 | tig0026815:-7021 | Msa1431260:CDS |
| TAGCAAGAAAGAGAGGGAAA+TGG | 0.407922 | tig0026815:-6349 | Msa1431260:CDS |
| GTCATCTTCATCAACACAAT+TGG | 0.442088 | tig0026815:-6543 | Msa1431260:intron |
| AGATGAGGAGGATGAGTCAG+AGG | 0.468825 | tig0026815:-6699 | Msa1431260:CDS |
| TTAGGTGGTTCAAGAGGAGA+GGG | 0.474041 | tig0026815:-6773 | Msa1431260:CDS |
| TGAAAAGCAAAGGTTGAAAT+GGG | 0.482868 | tig0026815:-6382 | Msa1431260:CDS |
| CATTCATCAGAGAATGGTGT+AGG | 0.490758 | tig0026815:-6800 | Msa1431260:CDS |
| TGTTGTTGATGCTGCTGTTG+AGG | 0.502837 | tig0026815:+6860 | None:intergenic |
| TCAGGAGAAGGTTGTTCAAA+GGG | 0.503478 | tig0026815:-6650 | Msa1431260:CDS |
| GAGCTAAACTTGAGAATGAA+AGG | 0.504094 | tig0026815:-6323 | Msa1431260:CDS |
| TTTAGGTGGTTCAAGAGGAG+AGG | 0.506295 | tig0026815:-6774 | Msa1431260:CDS |
| CAAGATGAAGAAGAGAATGA+TGG | 0.507615 | tig0026815:-6614 | Msa1431260:CDS |
| CACCAAGTAGAAGGTGGAAG+TGG | 0.508574 | tig0026815:-6905 | Msa1431260:CDS |
| GGGAGTTTAGGTGGTTCAAG+AGG | 0.515573 | tig0026815:-6779 | Msa1431260:CDS |
| CATTTCAGCTTGAAAAGCAA+AGG | 0.520923 | tig0026815:-6392 | Msa1431260:CDS |
| AATGTTCAGCACCAAGTAGA+AGG | 0.528848 | tig0026815:-6914 | Msa1431260:CDS |
| TGCTGTTGAGGTTGATTCTG+AGG | 0.531228 | tig0026815:+6872 | None:intergenic |
| GGTATAGTAGCAAGAAAGAG+AGG | 0.534687 | tig0026815:-6356 | Msa1431260:CDS |
| AGTTGTGGCCATGGTGGTGT+TGG | 0.546300 | tig0026815:-6944 | Msa1431260:CDS |
| AGAATGTTGAAAATTGGAAG+TGG | 0.548221 | tig0026815:-6746 | Msa1431260:CDS |
| TGAGGATGATGAAGATGAGG+AGG | 0.561727 | tig0026815:-6711 | Msa1431260:CDS |
| AATGGTGTAGGGAGTTTAGG+TGG | 0.562268 | tig0026815:-6788 | Msa1431260:CDS |
| GAATGTTGAAAATTGGAAGT+GGG | 0.573309 | tig0026815:-6745 | Msa1431260:CDS |
| ATCAGGAGAAGGTTGTTCAA+AGG | 0.577261 | tig0026815:-6651 | Msa1431260:CDS |
| GATGAAGGTGAATCAGGAGA+AGG | 0.579225 | tig0026815:-6662 | Msa1431260:CDS |
| TCTAACAAATTTCATCTAGG+TGG | 0.592393 | tig0026815:+6203 | None:intergenic |
| AGATGAGGATGATGAAGATG+AGG | 0.592779 | tig0026815:-6714 | Msa1431260:CDS |
| ATTCATCAGAGAATGGTGTA+GGG | 0.597498 | tig0026815:-6799 | Msa1431260:CDS |
| TATCATAATAGTTGTGGCCA+TGG | 0.601280 | tig0026815:-6953 | Msa1431260:CDS |
| AGCAAAGGTTGAAATGGGCA+AGG | 0.613121 | tig0026815:-6377 | Msa1431260:CDS |
| TGTTGAGGTTGATTCTGAGG+TGG | 0.615009 | tig0026815:+6875 | None:intergenic |
| GTATAGTAGCAAGAAAGAGA+GGG | 0.621792 | tig0026815:-6355 | Msa1431260:CDS |
| AAGTGGGGATGTTGAAGATG+AGG | 0.631886 | tig0026815:-6729 | Msa1431260:CDS |
| TGTGCTTATCATAATAGTTG+TGG | 0.640036 | tig0026815:-6959 | Msa1431260:CDS |
| GTTCAGCACCAAGTAGAAGG+TGG | 0.646983 | tig0026815:-6911 | Msa1431260:CDS |
| AATGTTGAAAATTGGAAGTG+GGG | 0.650508 | tig0026815:-6744 | Msa1431260:CDS |
| CATAATAGTTGTGGCCATGG+TGG | 0.659919 | tig0026815:-6950 | Msa1431260:CDS |
| TAGAAGTACCAACACCACCA+TGG | 0.700740 | tig0026815:+6936 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTCTAAGCATCTTTTCTTT+AGG | - | tig0026815:6264-6283 | Msa1431260:CDS | 25.0% |
| !! | TTCTAAGCATCTTTTCTTTA+GGG | - | tig0026815:6265-6284 | Msa1431260:CDS | 25.0% |
| ! | CAAATGAACAATGAAATAAG+TGG | - | tig0026815:6737-6756 | Msa1431260:CDS | 25.0% |
| ! | AAGATTAGAAAATGAGAGAA+TGG | - | tig0026815:6954-6973 | Msa1431260:CDS | 25.0% |
| !! | ATTCTAAGCATCTTTTCTTT+AGG | - | tig0026815:6264-6283 | Msa1431260:CDS | 25.0% |
| !! | TTCTAAGCATCTTTTCTTTA+GGG | - | tig0026815:6265-6284 | Msa1431260:CDS | 25.0% |
| ! | CAAATGAACAATGAAATAAG+TGG | - | tig0026815:6737-6756 | Msa1431260:CDS | 25.0% |
| ! | AAGATTAGAAAATGAGAGAA+TGG | - | tig0026815:6954-6973 | Msa1431260:CDS | 25.0% |
| CTAACTTCATCTTTCATCTT+AGG | + | tig0026815:6233-6252 | None:intergenic | 30.0% | |
| CTAAGATGAAAGATGAAGTT+AGG | - | tig0026815:6231-6250 | Msa1431260:CDS | 30.0% | |
| TGTGCTTATCATAATAGTTG+TGG | - | tig0026815:6293-6312 | Msa1431260:CDS | 30.0% | |
| ! | TGTTTTCATTCATCAGAGAA+TGG | - | tig0026815:6446-6465 | Msa1431260:intron | 30.0% |
| GGTTTGAGAATGTTGAAAAT+TGG | - | tig0026815:6500-6519 | Msa1431260:intron | 30.0% | |
| AGAATGTTGAAAATTGGAAG+TGG | - | tig0026815:6506-6525 | Msa1431260:intron | 30.0% | |
| GAATGTTGAAAATTGGAAGT+GGG | - | tig0026815:6507-6526 | Msa1431260:intron | 30.0% | |
| AATGTTGAAAATTGGAAGTG+GGG | - | tig0026815:6508-6527 | Msa1431260:intron | 30.0% | |
| TCAAGAAAAAGAGCAAGAAA+AGG | - | tig0026815:6668-6687 | Msa1431260:CDS | 30.0% | |
| ! | AAGGAGGATTTTCATTTTCA+AGG | - | tig0026815:6687-6706 | Msa1431260:CDS | 30.0% |
| TTGAAAAGCAAAGGTTGAAA+TGG | - | tig0026815:6869-6888 | Msa1431260:CDS | 30.0% | |
| TGAAAAGCAAAGGTTGAAAT+GGG | - | tig0026815:6870-6889 | Msa1431260:CDS | 30.0% | |
| !! | AGAGAATGGTTTTGCTTATT+AGG | - | tig0026815:6968-6987 | Msa1431260:CDS | 30.0% |
| CTAACTTCATCTTTCATCTT+AGG | + | tig0026815:6233-6252 | None:intergenic | 30.0% | |
| CTAAGATGAAAGATGAAGTT+AGG | - | tig0026815:6231-6250 | Msa1431260:CDS | 30.0% | |
| TGTGCTTATCATAATAGTTG+TGG | - | tig0026815:6293-6312 | Msa1431260:CDS | 30.0% | |
| ! | TGTTTTCATTCATCAGAGAA+TGG | - | tig0026815:6446-6465 | Msa1431260:intron | 30.0% |
| GGTTTGAGAATGTTGAAAAT+TGG | - | tig0026815:6500-6519 | Msa1431260:intron | 30.0% | |
| AGAATGTTGAAAATTGGAAG+TGG | - | tig0026815:6506-6525 | Msa1431260:intron | 30.0% | |
| GAATGTTGAAAATTGGAAGT+GGG | - | tig0026815:6507-6526 | Msa1431260:intron | 30.0% | |
| AATGTTGAAAATTGGAAGTG+GGG | - | tig0026815:6508-6527 | Msa1431260:intron | 30.0% | |
| TCAAGAAAAAGAGCAAGAAA+AGG | - | tig0026815:6668-6687 | Msa1431260:CDS | 30.0% | |
| ! | AAGGAGGATTTTCATTTTCA+AGG | - | tig0026815:6687-6706 | Msa1431260:CDS | 30.0% |
| TTGAAAAGCAAAGGTTGAAA+TGG | - | tig0026815:6869-6888 | Msa1431260:CDS | 30.0% | |
| TGAAAAGCAAAGGTTGAAAT+GGG | - | tig0026815:6870-6889 | Msa1431260:CDS | 30.0% | |
| !! | AGAGAATGGTTTTGCTTATT+AGG | - | tig0026815:6968-6987 | Msa1431260:CDS | 30.0% |
| TATCATAATAGTTGTGGCCA+TGG | - | tig0026815:6299-6318 | Msa1431260:CDS | 35.0% | |
| ATTCATCAGAGAATGGTGTA+GGG | - | tig0026815:6453-6472 | Msa1431260:intron | 35.0% | |
| ! | GATTTTTCTGATGAGGATGA+AGG | - | tig0026815:6575-6594 | Msa1431260:CDS | 35.0% |
| CAAGATGAAGAAGAGAATGA+TGG | - | tig0026815:6638-6657 | Msa1431260:CDS | 35.0% | |
| AGAAAAAGAGCAAGAAAAGG+AGG | - | tig0026815:6671-6690 | Msa1431260:CDS | 35.0% | |
| GTCATCTTCATCAACACAAT+TGG | - | tig0026815:6709-6728 | Msa1431260:CDS | 35.0% | |
| ATAAGTGGTGTGTTTCAAGA+TGG | - | tig0026815:6752-6771 | Msa1431260:CDS | 35.0% | |
| !!! | TATCCATTGCTTTTTTCCCA+AGG | + | tig0026815:6788-6807 | None:intergenic | 35.0% |
| TGGGAAAAAAGCAATGGATA+AGG | - | tig0026815:6788-6807 | Msa1431260:CDS | 35.0% | |
| AAAAGCAATGGATAAGGAAC+AGG | - | tig0026815:6794-6813 | Msa1431260:CDS | 35.0% | |
| CATTTCAGCTTGAAAAGCAA+AGG | - | tig0026815:6860-6879 | Msa1431260:CDS | 35.0% | |
| GTATAGTAGCAAGAAAGAGA+GGG | - | tig0026815:6897-6916 | Msa1431260:CDS | 35.0% | |
| GAGCTAAACTTGAGAATGAA+AGG | - | tig0026815:6929-6948 | Msa1431260:CDS | 35.0% | |
| ! | GGTTTTGCTTATTAGGAAGA+AGG | - | tig0026815:6975-6994 | Msa1431260:CDS | 35.0% |
| TATCATAATAGTTGTGGCCA+TGG | - | tig0026815:6299-6318 | Msa1431260:CDS | 35.0% | |
| ATTCATCAGAGAATGGTGTA+GGG | - | tig0026815:6453-6472 | Msa1431260:intron | 35.0% | |
| ! | GATTTTTCTGATGAGGATGA+AGG | - | tig0026815:6575-6594 | Msa1431260:CDS | 35.0% |
| CAAGATGAAGAAGAGAATGA+TGG | - | tig0026815:6638-6657 | Msa1431260:CDS | 35.0% | |
| AGAAAAAGAGCAAGAAAAGG+AGG | - | tig0026815:6671-6690 | Msa1431260:CDS | 35.0% | |
| GTCATCTTCATCAACACAAT+TGG | - | tig0026815:6709-6728 | Msa1431260:CDS | 35.0% | |
| ATAAGTGGTGTGTTTCAAGA+TGG | - | tig0026815:6752-6771 | Msa1431260:CDS | 35.0% | |
| !!! | TATCCATTGCTTTTTTCCCA+AGG | + | tig0026815:6788-6807 | None:intergenic | 35.0% |
| TGGGAAAAAAGCAATGGATA+AGG | - | tig0026815:6788-6807 | Msa1431260:CDS | 35.0% | |
| AAAAGCAATGGATAAGGAAC+AGG | - | tig0026815:6794-6813 | Msa1431260:CDS | 35.0% | |
| CATTTCAGCTTGAAAAGCAA+AGG | - | tig0026815:6860-6879 | Msa1431260:CDS | 35.0% | |
| GTATAGTAGCAAGAAAGAGA+GGG | - | tig0026815:6897-6916 | Msa1431260:CDS | 35.0% | |
| GAGCTAAACTTGAGAATGAA+AGG | - | tig0026815:6929-6948 | Msa1431260:CDS | 35.0% | |
| ! | GGTTTTGCTTATTAGGAAGA+AGG | - | tig0026815:6975-6994 | Msa1431260:CDS | 35.0% |
| AATGTTCAGCACCAAGTAGA+AGG | - | tig0026815:6338-6357 | Msa1431260:CDS | 40.0% | |
| CATTCATCAGAGAATGGTGT+AGG | - | tig0026815:6452-6471 | Msa1431260:intron | 40.0% | |
| AGATGAGGATGATGAAGATG+AGG | - | tig0026815:6538-6557 | Msa1431260:intron | 40.0% | |
| ! | GTCAGAGGATTTTTCTGATG+AGG | - | tig0026815:6568-6587 | Msa1431260:CDS | 40.0% |
| ATCAGGAGAAGGTTGTTCAA+AGG | - | tig0026815:6601-6620 | Msa1431260:CDS | 40.0% | |
| TCAGGAGAAGGTTGTTCAAA+GGG | - | tig0026815:6602-6621 | Msa1431260:CDS | 40.0% | |
| AGTCCTTGGGAAAAAAGCAA+TGG | - | tig0026815:6782-6801 | Msa1431260:CDS | 40.0% | |
| AAGGAACAGGATAATGCAGT+TGG | - | tig0026815:6807-6826 | Msa1431260:CDS | 40.0% | |
| CAGTTGGAGGAACAGAAAAT+AGG | - | tig0026815:6823-6842 | Msa1431260:CDS | 40.0% | |
| GGTATAGTAGCAAGAAAGAG+AGG | - | tig0026815:6896-6915 | Msa1431260:CDS | 40.0% | |
| TAGCAAGAAAGAGAGGGAAA+TGG | - | tig0026815:6903-6922 | Msa1431260:CDS | 40.0% | |
| AATGTTCAGCACCAAGTAGA+AGG | - | tig0026815:6338-6357 | Msa1431260:CDS | 40.0% | |
| CATTCATCAGAGAATGGTGT+AGG | - | tig0026815:6452-6471 | Msa1431260:intron | 40.0% | |
| AGATGAGGATGATGAAGATG+AGG | - | tig0026815:6538-6557 | Msa1431260:intron | 40.0% | |
| ! | GTCAGAGGATTTTTCTGATG+AGG | - | tig0026815:6568-6587 | Msa1431260:CDS | 40.0% |
| ATCAGGAGAAGGTTGTTCAA+AGG | - | tig0026815:6601-6620 | Msa1431260:CDS | 40.0% | |
| TCAGGAGAAGGTTGTTCAAA+GGG | - | tig0026815:6602-6621 | Msa1431260:CDS | 40.0% | |
| AGTCCTTGGGAAAAAAGCAA+TGG | - | tig0026815:6782-6801 | Msa1431260:CDS | 40.0% | |
| AAGGAACAGGATAATGCAGT+TGG | - | tig0026815:6807-6826 | Msa1431260:CDS | 40.0% | |
| CAGTTGGAGGAACAGAAAAT+AGG | - | tig0026815:6823-6842 | Msa1431260:CDS | 40.0% | |
| GGTATAGTAGCAAGAAAGAG+AGG | - | tig0026815:6896-6915 | Msa1431260:CDS | 40.0% | |
| TAGCAAGAAAGAGAGGGAAA+TGG | - | tig0026815:6903-6922 | Msa1431260:CDS | 40.0% | |
| CATAATAGTTGTGGCCATGG+TGG | - | tig0026815:6302-6321 | Msa1431260:CDS | 45.0% | |
| !! | TAGAAGTACCAACACCACCA+TGG | + | tig0026815:6319-6338 | None:intergenic | 45.0% |
| TTCCACTTCCACCTTCTACT+TGG | + | tig0026815:6352-6371 | None:intergenic | 45.0% | |
| ! | TGTTGAGGTTGATTCTGAGG+TGG | + | tig0026815:6380-6399 | None:intergenic | 45.0% |
| ! | TGCTGTTGAGGTTGATTCTG+AGG | + | tig0026815:6383-6402 | None:intergenic | 45.0% |
| TGTTGTTGATGCTGCTGTTG+AGG | + | tig0026815:6395-6414 | None:intergenic | 45.0% | |
| GAGAATGGTGTAGGGAGTTT+AGG | - | tig0026815:6461-6480 | Msa1431260:intron | 45.0% | |
| AATGGTGTAGGGAGTTTAGG+TGG | - | tig0026815:6464-6483 | Msa1431260:intron | 45.0% | |
| TTTAGGTGGTTCAAGAGGAG+AGG | - | tig0026815:6478-6497 | Msa1431260:intron | 45.0% | |
| TTAGGTGGTTCAAGAGGAGA+GGG | - | tig0026815:6479-6498 | Msa1431260:intron | 45.0% | |
| AAGTGGGGATGTTGAAGATG+AGG | - | tig0026815:6523-6542 | Msa1431260:intron | 45.0% | |
| TGAGGATGATGAAGATGAGG+AGG | - | tig0026815:6541-6560 | Msa1431260:intron | 45.0% | |
| GATGAGGATGAAGGTGAATC+AGG | - | tig0026815:6584-6603 | Msa1431260:CDS | 45.0% | |
| GATGAAGGTGAATCAGGAGA+AGG | - | tig0026815:6590-6609 | Msa1431260:CDS | 45.0% | |
| AGTGGTGTGTTTCAAGATGG+AGG | - | tig0026815:6755-6774 | Msa1431260:CDS | 45.0% | |
| GTGGTGTGTTTCAAGATGGA+GGG | - | tig0026815:6756-6775 | Msa1431260:CDS | 45.0% | |
| GAACAGGATAATGCAGTTGG+AGG | - | tig0026815:6810-6829 | Msa1431260:CDS | 45.0% | |
| AGCAAAGGTTGAAATGGGCA+AGG | - | tig0026815:6875-6894 | Msa1431260:CDS | 45.0% | |
| CATAATAGTTGTGGCCATGG+TGG | - | tig0026815:6302-6321 | Msa1431260:CDS | 45.0% | |
| !! | TAGAAGTACCAACACCACCA+TGG | + | tig0026815:6319-6338 | None:intergenic | 45.0% |
| TTCCACTTCCACCTTCTACT+TGG | + | tig0026815:6352-6371 | None:intergenic | 45.0% | |
| ! | TGTTGAGGTTGATTCTGAGG+TGG | + | tig0026815:6380-6399 | None:intergenic | 45.0% |
| ! | TGCTGTTGAGGTTGATTCTG+AGG | + | tig0026815:6383-6402 | None:intergenic | 45.0% |
| TGTTGTTGATGCTGCTGTTG+AGG | + | tig0026815:6395-6414 | None:intergenic | 45.0% | |
| GAGAATGGTGTAGGGAGTTT+AGG | - | tig0026815:6461-6480 | Msa1431260:intron | 45.0% | |
| AATGGTGTAGGGAGTTTAGG+TGG | - | tig0026815:6464-6483 | Msa1431260:intron | 45.0% | |
| TTTAGGTGGTTCAAGAGGAG+AGG | - | tig0026815:6478-6497 | Msa1431260:intron | 45.0% | |
| TTAGGTGGTTCAAGAGGAGA+GGG | - | tig0026815:6479-6498 | Msa1431260:intron | 45.0% | |
| AAGTGGGGATGTTGAAGATG+AGG | - | tig0026815:6523-6542 | Msa1431260:intron | 45.0% | |
| TGAGGATGATGAAGATGAGG+AGG | - | tig0026815:6541-6560 | Msa1431260:intron | 45.0% | |
| GATGAGGATGAAGGTGAATC+AGG | - | tig0026815:6584-6603 | Msa1431260:CDS | 45.0% | |
| GATGAAGGTGAATCAGGAGA+AGG | - | tig0026815:6590-6609 | Msa1431260:CDS | 45.0% | |
| AGTGGTGTGTTTCAAGATGG+AGG | - | tig0026815:6755-6774 | Msa1431260:CDS | 45.0% | |
| GTGGTGTGTTTCAAGATGGA+GGG | - | tig0026815:6756-6775 | Msa1431260:CDS | 45.0% | |
| GAACAGGATAATGCAGTTGG+AGG | - | tig0026815:6810-6829 | Msa1431260:CDS | 45.0% | |
| AGCAAAGGTTGAAATGGGCA+AGG | - | tig0026815:6875-6894 | Msa1431260:CDS | 45.0% | |
| GTTCAGCACCAAGTAGAAGG+TGG | - | tig0026815:6341-6360 | Msa1431260:CDS | 50.0% | |
| CACCAAGTAGAAGGTGGAAG+TGG | - | tig0026815:6347-6366 | Msa1431260:CDS | 50.0% | |
| GGGAGTTTAGGTGGTTCAAG+AGG | - | tig0026815:6473-6492 | Msa1431260:intron | 50.0% | |
| AGATGAGGAGGATGAGTCAG+AGG | - | tig0026815:6553-6572 | Msa1431260:CDS | 50.0% | |
| AAGATGGAGGGAAGAGTCCT+TGG | - | tig0026815:6768-6787 | Msa1431260:CDS | 50.0% | |
| AGATGGAGGGAAGAGTCCTT+GGG | - | tig0026815:6769-6788 | Msa1431260:CDS | 50.0% | |
| GTTCAGCACCAAGTAGAAGG+TGG | - | tig0026815:6341-6360 | Msa1431260:CDS | 50.0% | |
| CACCAAGTAGAAGGTGGAAG+TGG | - | tig0026815:6347-6366 | Msa1431260:CDS | 50.0% | |
| GGGAGTTTAGGTGGTTCAAG+AGG | - | tig0026815:6473-6492 | Msa1431260:intron | 50.0% | |
| AGATGAGGAGGATGAGTCAG+AGG | - | tig0026815:6553-6572 | Msa1431260:CDS | 50.0% | |
| AAGATGGAGGGAAGAGTCCT+TGG | - | tig0026815:6768-6787 | Msa1431260:CDS | 50.0% | |
| AGATGGAGGGAAGAGTCCTT+GGG | - | tig0026815:6769-6788 | Msa1431260:CDS | 50.0% | |
| ! | AGTTGTGGCCATGGTGGTGT+TGG | - | tig0026815:6308-6327 | Msa1431260:CDS | 55.0% |
| ! | AGTTGTGGCCATGGTGGTGT+TGG | - | tig0026815:6308-6327 | Msa1431260:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0026815 | gene | 6218 | 7056 | 6218 | ID=Msa1431260;Name=Msa1431260 |
| tig0026815 | mRNA | 6218 | 7056 | 6218 | ID=Msa1431260-mRNA-1;Parent=Msa1431260;Name=Msa1431260-mRNA-1;_AED=0.26;_eAED=0.29;_QI=0|0|0|1|1|1|2|0|247 |
| tig0026815 | exon | 6544 | 7056 | 6544 | ID=Msa1431260-mRNA-1:exon:7488;Parent=Msa1431260-mRNA-1 |
| tig0026815 | exon | 6218 | 6448 | 6218 | ID=Msa1431260-mRNA-1:exon:7487;Parent=Msa1431260-mRNA-1 |
| tig0026815 | CDS | 6544 | 7056 | 6544 | ID=Msa1431260-mRNA-1:cds;Parent=Msa1431260-mRNA-1 |
| tig0026815 | CDS | 6218 | 6448 | 6218 | ID=Msa1431260-mRNA-1:cds;Parent=Msa1431260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
