AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0039750

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0039750 MtrunA17_Chr1g0204101 93.413 334 4 2 1 317 1 333 0.0 622
Msa0039750 MtrunA17_Chr6g0474331 80.180 333 46 2 5 317 6 338 0.0 541
Msa0039750 MtrunA17_Chr1g0183241 74.921 315 71 2 6 318 92 400 3.60e-161 456
Msa0039750 MtrunA17_Chr5g0434971 69.876 322 78 3 13 316 55 375 1.05e-153 436
Msa0039750 MtrunA17_Chr2g0329451 60.938 320 106 2 14 316 4 321 1.21e-135 388
Msa0039750 MtrunA17_Chr1g0188291 60.383 313 105 3 24 319 8 318 1.68e-135 387
Msa0039750 MtrunA17_Chr4g0033631 63.023 311 96 2 22 315 13 321 2.78e-135 387
Msa0039750 MtrunA17_Chr1g0183661 67.832 286 63 3 39 307 3 276 1.51e-131 376
Msa0039750 MtrunA17_Chr1g0177771 66.038 318 91 4 9 316 238 548 1.54e-131 385
Msa0039750 MtrunA17_Chr1g0171921 64.220 327 101 6 6 316 165 491 8.21e-129 378
Msa0039750 MtrunA17_Chr1g0177321 61.250 320 94 5 9 316 164 465 2.19e-116 344
Msa0039750 MtrunA17_Chr1g0176221 62.661 233 56 2 84 316 1 202 9.95e-90 267
Msa0039750 MtrunA17_Chr7g0246421 61.702 188 72 0 131 318 2 189 1.46e-80 243
Msa0039750 MtrunA17_Chr4g0020911 76.296 135 32 0 130 264 55 189 2.13e-64 202
Msa0039750 MtrunA17_Chr5g0419371 27.907 344 194 6 24 316 210 550 4.14e-39 145
Msa0039750 MtrunA17_Chr7g0246411 53.125 128 41 2 24 132 41 168 1.92e-37 132
Msa0039750 MtrunA17_Chr4g0008441 28.492 358 194 7 24 319 93 450 1.58e-36 136
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0039750 AT5G51830.2 73.585 318 67 1 19 319 18 335 3.86e-172 481
Msa0039750 AT5G51830.1 73.585 318 67 1 19 319 18 335 3.86e-172 481
Msa0039750 AT1G66430.1 68.671 316 81 2 19 317 60 374 2.51e-155 440
Msa0039750 AT4G10260.1 62.013 308 98 3 24 314 6 311 3.48e-134 384
Msa0039750 AT2G31390.1 60.815 319 106 3 19 320 4 320 4.19e-134 384
Msa0039750 AT1G06030.1 60.897 312 103 3 20 314 7 316 2.07e-132 380
Msa0039750 AT3G59480.1 58.716 327 112 4 14 323 4 324 4.23e-132 379
Msa0039750 AT1G06020.1 60.194 309 104 2 23 314 9 315 3.83e-130 375
Msa0039750 AT1G50390.1 50.307 163 50 1 152 314 1 132 1.93e-46 154
Msa0039750 AT3G54090.1 30.278 360 184 9 24 319 103 459 2.92e-41 150
Msa0039750 AT1G69200.1 28.963 328 182 8 24 301 206 532 2.91e-37 140

Find 175 sgRNAs with CRISPR-Local

Find 678 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTGCTGCATACATTCATTT+TGG 0.147712 1_1:-69695386 Msa0039750:three_prime_UTR
TTGCGAAATATAGCGCTTTC+TGG 0.164655 1_1:+69702931 None:intergenic
CAATTAGAAGTTTGAGATTA+GGG 0.257397 1_1:+69703488 None:intergenic
AGACCGTCGGGTCCGATCTC+AGG 0.275675 1_1:+69698189 None:intergenic
GGGAATTGGTGCTGTGTCTA+AGG 0.286846 1_1:-69695504 Msa0039750:three_prime_UTR
CAGGCTAAAATATTCCATTA+TGG 0.292003 1_1:-69703888 Msa0039750:CDS
TAGGTTGGATCAGATGAATT+TGG 0.297120 1_1:-69704190 Msa0039750:CDS
AAAGTCAACTTCCAATTAAA+AGG 0.301201 1_1:-69695530 Msa0039750:three_prime_UTR
TTCATTGTTTACATATATAT+AGG 0.301689 1_1:-69694904 Msa0039750:three_prime_UTR
TCATTAGGAGGTAGCTGATT+AGG 0.307360 1_1:+69695575 None:intergenic
AACAAAAGCCAATGCGGTTC+TGG 0.313707 1_1:+69704099 None:intergenic
TCCTAGTGCTGATATGCTTC+TGG 0.318385 1_1:-69704032 Msa0039750:CDS
ATGTGAAGATTTGAGCAATT+TGG 0.324746 1_1:-69696249 Msa0039750:intron
CGAATTTGAGATTGGCACTA+TGG 0.327098 1_1:-69703773 Msa0039750:CDS
GAAGGAAGAGGAAGCAATAA+AGG 0.333223 1_1:-69696279 Msa0039750:three_prime_UTR
AGGTTGGATCAGATGAATTT+GGG 0.335559 1_1:-69704189 Msa0039750:CDS
GTGCCGTCTCCGACGACTTC+CGG 0.345962 1_1:+69698279 None:intergenic
ACAATTAGAAGTTTGAGATT+AGG 0.347106 1_1:+69703487 None:intergenic
GCTGGCTTTGACGCTTGAAT+TGG 0.348948 1_1:-69695452 Msa0039750:three_prime_UTR
TCATTGTTTACATATATATA+GGG 0.349417 1_1:-69694903 Msa0039750:three_prime_UTR
GCTCCTGGCTGGACTGGTGC+TGG 0.351549 1_1:-69695470 Msa0039750:three_prime_UTR
CAAAATAATGTTGATACATC+TGG 0.351909 1_1:-69704142 Msa0039750:CDS
ACCATAAGGGCAAGTCAAAA+TGG 0.355142 1_1:+69695058 None:intergenic
AGTGGACTGGTTGTTTGTTT+TGG 0.362156 1_1:-69705069 Msa0039750:CDS
GCATATCAGCACTAGGATTT+CGG 0.363456 1_1:+69704038 None:intergenic
TTTGTATTCTTCTATTCAAA+AGG 0.366931 1_1:+69706304 None:intergenic
TGACGCTTGAATTGGGTAGA+TGG 0.369487 1_1:-69695444 Msa0039750:three_prime_UTR
TATACCTTGTACATAAAGTA+TGG 0.378410 1_1:+69695354 None:intergenic
ATCCGAGCCGAATATGAAAA+AGG 0.381002 1_1:+69698313 None:intergenic
TTCATCAAATATTACCATAA+GGG 0.381406 1_1:+69695045 None:intergenic
GCCGATGACGGCAGCTTCTC+TGG 0.381827 1_1:+69698164 None:intergenic
GAAGAAACTAGTTTCGTGTT+TGG 0.393418 1_1:-69695005 Msa0039750:three_prime_UTR
TCAAACTGATGGAACCATAA+TGG 0.399197 1_1:+69703874 None:intergenic
CAATTAAAAGGAAAGGGAAT+TGG 0.401380 1_1:-69695518 Msa0039750:three_prime_UTR
TTTCATCAAATATTACCATA+AGG 0.406489 1_1:+69695044 None:intergenic
CCACTTGATTCCCTTGCGTT+GGG 0.409880 1_1:+69695659 None:intergenic
GTCCGTGTTCAGTGTTAACT+TGG 0.414534 1_1:-69695317 Msa0039750:three_prime_UTR
CATAGTGCCAATCTCAAATT+CGG 0.415637 1_1:+69703774 None:intergenic
TCAGTCTCAGTTTGCACGGC+TGG 0.418620 1_1:-69696140 Msa0039750:three_prime_UTR
GGACTGGTATAATGAGCATA+TGG 0.418638 1_1:-69703731 Msa0039750:CDS
CATTAAAGTAAATACCTTCC+GGG 0.423536 1_1:+69697107 None:intergenic
TTTGATGAAACAACGGTTGT+TGG 0.425748 1_1:-69695031 Msa0039750:three_prime_UTR
ATAATACAATTGACTAATTG+AGG 0.428866 1_1:+69695281 None:intergenic
CCCACTTGATTCCCTTGCGT+TGG 0.431316 1_1:+69695658 None:intergenic
AGCTTCTCTGGCAAGACCGT+CGG 0.432327 1_1:+69698176 None:intergenic
CCAGCACCAGTTGTGTCAAC+AGG 0.432600 1_1:+69703115 None:intergenic
TCGTTGTACTCTCCGTTTGT+GGG 0.433338 1_1:+69705096 None:intergenic
TGAATTACCTCGAAAATACT+TGG 0.438736 1_1:+69703049 None:intergenic
TCTTCTGCTCCTGGCTGGAC+TGG 0.439886 1_1:-69695476 Msa0039750:three_prime_UTR
GTATGATCCGAATTTGAGAT+TGG 0.448557 1_1:-69703781 Msa0039750:CDS
AACATATCAATATGTTGAGT+TGG 0.450138 1_1:-69695163 Msa0039750:three_prime_UTR
AGTCCTCTACTACAACATTC+AGG 0.452248 1_1:-69695190 Msa0039750:three_prime_UTR
TTCGTTGTACTCTCCGTTTG+TGG 0.456495 1_1:+69705095 None:intergenic
CTGGAGATGCATTTGTTAGT+GGG 0.456951 1_1:-69703096 Msa0039750:CDS
GTAGATCTTCTGCTCCTGGC+TGG 0.457997 1_1:-69695481 Msa0039750:three_prime_UTR
TTTCTTGAAAGCAGGTGCTT+CGG 0.458667 1_1:+69704999 None:intergenic
TGACAGCTTGCATAATCAAA+AGG 0.459209 1_1:+69695135 None:intergenic
CTGGCTTTGACGCTTGAATT+GGG 0.462283 1_1:-69695451 Msa0039750:three_prime_UTR
GCTTCTCTGGCAAGACCGTC+GGG 0.463640 1_1:+69698177 None:intergenic
GCATTAGTTGTTGTGTGACT+TGG 0.469535 1_1:+69696085 None:intergenic
CCTGTTGACACAACTGGTGC+TGG 0.471362 1_1:-69703115 Msa0039750:CDS
AAGGGTAGATCTTCTGCTCC+TGG 0.476196 1_1:-69695485 Msa0039750:three_prime_UTR
GCTCGGATCTTCAAATCAAC+CGG 0.480303 1_1:-69698298 Msa0039750:three_prime_UTR
GACAGCTTGCATAATCAAAA+GGG 0.488129 1_1:+69695136 None:intergenic
TTTCTGACCATTACTTTGAT+CGG 0.488351 1_1:+69695616 None:intergenic
GGATCTAGCCGATGTCATAA+AGG 0.488434 1_1:-69703709 Msa0039750:intron
GGCCATCAGCTGAGGCTGCT+CGG 0.491094 1_1:-69703752 Msa0039750:CDS
AGGGTTACTTGACGCCATTA+CGG 0.491195 1_1:+69698221 None:intergenic
AAACTTCTAATTGTTACTGA+AGG 0.493747 1_1:-69703478 Msa0039750:CDS
TCAGCTGAGGCTGCTCGGAC+TGG 0.496871 1_1:-69703747 Msa0039750:CDS
CACAATTACACAAAGAAAGA+AGG 0.498750 1_1:+69706225 None:intergenic
GCTGGAGATGCATTTGTTAG+TGG 0.500302 1_1:-69703097 Msa0039750:CDS
GTCCGAGCAGCCTCAGCTGA+TGG 0.500567 1_1:+69703750 None:intergenic
GTTAAACCTGTTGACACAAC+TGG 0.501040 1_1:-69703121 Msa0039750:CDS
AACTTCCAATTAAAAGGAAA+GGG 0.503408 1_1:-69695524 Msa0039750:three_prime_UTR
AATACAACATCATCATCATA+AGG 0.505738 1_1:+69703526 None:intergenic
AAAATTTACCTTTATGACAT+CGG 0.508019 1_1:+69703701 None:intergenic
TTGATGAAACAACGGTTGTT+GGG 0.510105 1_1:-69695030 Msa0039750:three_prime_UTR
GAGATCGGAAAGTTCTTCTC+AGG 0.511097 1_1:-69695711 Msa0039750:three_prime_UTR
CCTTCGCTTCGCCCTGAGAT+CGG 0.511453 1_1:-69698201 Msa0039750:three_prime_UTR
CCAGGAGCTTTCTTGAAAGC+AGG 0.513992 1_1:+69704991 None:intergenic
GACCGTCGGGTCCGATCTCA+GGG 0.514138 1_1:+69698190 None:intergenic
TTCTGATGCCAGAACCGCAT+TGG 0.514230 1_1:-69704107 Msa0039750:CDS
CCGATCTCAGGGCGAAGCGA+AGG 0.514737 1_1:+69698201 None:intergenic
CAACTTCCAATTAAAAGGAA+AGG 0.514991 1_1:-69695525 Msa0039750:three_prime_UTR
TGACCATAACCTCATTGAAA+AGG 0.517218 1_1:-69703996 Msa0039750:intron
TTGTATTCTTCTATTCAAAA+GGG 0.519057 1_1:+69706305 None:intergenic
AAGCCAGCACCAGTCCAGCC+AGG 0.521386 1_1:+69695467 None:intergenic
GCAAGATGAGCTGACTTGCA+TGG 0.522605 1_1:+69703843 None:intergenic
TTTGTTACACTTAGAGCTGA+TGG 0.528198 1_1:-69704082 Msa0039750:CDS
CCTGCTTTCAAGAAAGCTCC+TGG 0.530029 1_1:-69704991 Msa0039750:CDS
AGGTCCATACTTTATGTACA+AGG 0.531751 1_1:-69695358 Msa0039750:three_prime_UTR
AGCTAAAAGAAGAACAAGCC+CGG 0.536660 1_1:-69697125 Msa0039750:three_prime_UTR
GTTCCTCTGTTCCCAACGCA+AGG 0.538012 1_1:-69695670 Msa0039750:three_prime_UTR
GACTGGTATAATGAGCATAT+GGG 0.540901 1_1:-69703730 Msa0039750:CDS
TTGCCTGAATGTTGTAGTAG+AGG 0.544072 1_1:+69695187 None:intergenic
GCGATCACCGTGACAGAGAG+AGG 0.544506 1_1:-69702897 Msa0039750:CDS
AGCAGCAGCAAAAGTAGTGA+AGG 0.544691 1_1:-69696297 Msa0039750:three_prime_UTR
AACTAGTTTCGTGTTTGGAT+AGG 0.545318 1_1:-69695000 Msa0039750:three_prime_UTR
TGGCTCATCAATCAAACTGA+TGG 0.547967 1_1:+69703863 None:intergenic
TAATACAATTGACTAATTGA+GGG 0.549002 1_1:+69695282 None:intergenic
TTTCCTTCGCTTTCATTAGG+AGG 0.549995 1_1:+69695563 None:intergenic
GTCGTCGGAGACGGCACTGA+CGG 0.550431 1_1:-69698273 Msa0039750:three_prime_UTR
CAGGAGAGTAAAACACAAGA+TGG 0.554002 1_1:-69695692 Msa0039750:three_prime_UTR
CTATATTTCGCAAATGTATG+TGG 0.554913 1_1:-69702921 Msa0039750:CDS
AACTTCTAATTGTTACTGAA+GGG 0.559879 1_1:-69703477 Msa0039750:CDS
CTTGAGATGAAACTTACAGC+TGG 0.561291 1_1:-69697320 Msa0039750:three_prime_UTR
ATTATGTTAGGATGGGAGAT+CGG 0.563921 1_1:-69695726 Msa0039750:intron
TTTATTGCAGATCAGTGAAG+AGG 0.565517 1_1:-69703578 Msa0039750:intron
TACCTCGAAAATACTTGGGT+CGG 0.566049 1_1:+69703054 None:intergenic
CGCCCTGAGATCGGACCCGA+CGG 0.567718 1_1:-69698192 Msa0039750:three_prime_UTR
GGTAATATTTGATGAAACAA+CGG 0.568700 1_1:-69695038 Msa0039750:three_prime_UTR
AAATCTGATGATCCCACAAA+CGG 0.569926 1_1:-69705108 Msa0039750:CDS
TTTCTTTCTCAAATGCTCAA+GGG 0.570599 1_1:+69697182 None:intergenic
GCCAGAGAAGCTGCCGTCAT+CGG 0.572883 1_1:-69698165 Msa0039750:three_prime_UTR
TGGAATTGCAAATGTAGAAG+AGG 0.574529 1_1:+69706159 None:intergenic
CAACCGGAAGTCGTCGGAGA+CGG 0.574800 1_1:-69698282 Msa0039750:three_prime_UTR
GGAATTGGTGCTGTGTCTAA+GGG 0.575441 1_1:-69695503 Msa0039750:three_prime_UTR
AGATGAATTTGGGTATATGT+TGG 0.576116 1_1:-69704179 Msa0039750:CDS
CCGTCATCGGCTACACTGAG+AGG 0.576614 1_1:-69698152 Msa0039750:three_prime_UTR
GAGTGATTAACCTTCTGACT+TGG 0.577229 1_1:-69695235 Msa0039750:three_prime_UTR
CGATCACCGTGACAGAGAGA+GGG 0.577682 1_1:-69702896 Msa0039750:CDS
AATTGTTACTGAAGGGTCAG+AGG 0.586261 1_1:-69703470 Msa0039750:CDS
AATTGCCCCTCTCTCTGTCA+CGG 0.587278 1_1:+69702890 None:intergenic
ATTGTTACTGAAGGGTCAGA+GGG 0.587459 1_1:-69703469 Msa0039750:CDS
GAACACGGACGGAGGACAGA+AGG 0.588412 1_1:+69695330 None:intergenic
CCCAACGCAAGGGAATCAAG+TGG 0.588631 1_1:-69695659 Msa0039750:three_prime_UTR
ATTACACAAAGAAAGAAGGA+AGG 0.590133 1_1:+69706229 None:intergenic
TCAAATCAACCGGAAGTCGT+CGG 0.594339 1_1:-69698288 Msa0039750:three_prime_UTR
TTCCCTTGCGTTGGGAACAG+AGG 0.594506 1_1:+69695667 None:intergenic
CCAACGCAAGGGAATCAAGT+GGG 0.597329 1_1:-69695658 Msa0039750:three_prime_UTR
GGCACTATGGCCATCAGCTG+AGG 0.597442 1_1:-69703760 Msa0039750:CDS
CGATCTCAGGGCGAAGCGAA+GGG 0.598299 1_1:+69698202 None:intergenic
TTGTTTACATATATATAGGG+AGG 0.599559 1_1:-69694900 Msa0039750:three_prime_UTR
GCAGTCAGTCTCAGTTTGCA+CGG 0.601159 1_1:-69696144 Msa0039750:three_prime_UTR
GGGGTAAACTGTGCCATCTG+AGG 0.602127 1_1:+69706113 None:intergenic
AGAGTCTTTAGCAATTCTCA+AGG 0.603061 1_1:+69703818 None:intergenic
GCTATCAAAACCAAGTCAGA+AGG 0.603264 1_1:+69695225 None:intergenic
CGTCATCGGCTACACTGAGA+GGG 0.604120 1_1:-69698151 Msa0039750:intron
CTATTCGAAGATTCGAAATG+TGG 0.605312 1_1:-69697366 Msa0039750:three_prime_UTR
CCTCTCAGTGTAGCCGATGA+CGG 0.605587 1_1:+69698152 None:intergenic
TTCCAAGTTAACACTGAACA+CGG 0.605655 1_1:+69695315 None:intergenic
GAATTACCTCGAAAATACTT+GGG 0.606713 1_1:+69703050 None:intergenic
AGCAAAAGTAGTGAAGGAAG+AGG 0.607596 1_1:-69696291 Msa0039750:three_prime_UTR
AAAAGAAGAACAAGCCCGGA+AGG 0.610621 1_1:-69697121 Msa0039750:intron
GTACAACGAAACAAGTGGAC+TGG 0.613455 1_1:-69705082 Msa0039750:CDS
TGTTTACATATATATAGGGA+GGG 0.613764 1_1:-69694899 Msa0039750:three_prime_UTR
TTTCTTGCAGATCATCGAAG+AGG 0.614509 1_1:-69698057 Msa0039750:intron
TTGAGATGAAACTTACAGCT+GGG 0.616543 1_1:-69697319 Msa0039750:three_prime_UTR
TTCCTCTGTTCCCAACGCAA+GGG 0.617747 1_1:-69695669 Msa0039750:three_prime_UTR
CAACGCAAGGGAATCAAGTG+GGG 0.622276 1_1:-69695657 Msa0039750:three_prime_UTR
ACTTTGATCGGTAACACTCG+TGG 0.625013 1_1:+69695628 None:intergenic
TTGCAAATGTAGAAGAGGAA+AGG 0.625645 1_1:+69706164 None:intergenic
GGAGAGTACAACGAAACAAG+TGG 0.626054 1_1:-69705087 Msa0039750:CDS
AGTGTTACCGATCAAAGTAA+TGG 0.626907 1_1:-69695623 Msa0039750:three_prime_UTR
CTACCTCCTAATGAAAGCGA+AGG 0.630299 1_1:-69695566 Msa0039750:three_prime_UTR
GATCATGCAATGCAATGAAG+AGG 0.632552 1_1:+69706252 None:intergenic
TTACACAAAGAAAGAAGGAA+GGG 0.635630 1_1:+69706230 None:intergenic
TCCAGAAGCATATCAGCACT+AGG 0.651647 1_1:+69704031 None:intergenic
AAGTTAACACTGAACACGGA+CGG 0.654859 1_1:+69695319 None:intergenic
AGAGACACTCCACCCACTGT+AGG 0.656519 1_1:+69705024 None:intergenic
ACAGCTTGCATAATCAAAAG+GGG 0.667502 1_1:+69695137 None:intergenic
GTGTGATAGAATTCCACTGT+GGG 0.668775 1_1:-69694954 Msa0039750:three_prime_UTR
AACGCAAGGGAATCAAGTGG+GGG 0.669401 1_1:-69695656 Msa0039750:three_prime_UTR
GCACTGACGGTGGTACGCGA+CGG 0.670290 1_1:-69698260 Msa0039750:three_prime_UTR
ATGTTGATACATCTGGCATG+CGG 0.677431 1_1:-69704135 Msa0039750:CDS
GTCGGAGACGGCACTGACGG+TGG 0.683944 1_1:-69698270 Msa0039750:three_prime_UTR
AAAGGTGTGTGTGACGATGA+CGG 0.689654 1_1:+69698331 None:intergenic
GCTTTCAAGAAAGCTCCTGG+TGG 0.692356 1_1:-69704988 Msa0039750:CDS
GATCACCGTGACAGAGAGAG+GGG 0.699187 1_1:-69702895 Msa0039750:CDS
AAGTGTAACAAAAGCCAATG+CGG 0.715154 1_1:+69704093 None:intergenic
TTAACACTGAACACGGACGG+AGG 0.720776 1_1:+69695322 None:intergenic
TGTGTGTGACGATGACGGTG+CGG 0.742174 1_1:+69698336 None:intergenic
ATTAATGTACAATCCCACAG+TGG 0.774230 1_1:+69694941 None:intergenic
TGTGTGATAGAATTCCACTG+TGG 0.819245 1_1:-69694955 Msa0039750:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATTAAAATTTAATATT+TGG - chr1_1:69699509-69699528 Msa0039750:intron 0.0%
!! AAAGATAAAGTTTAATAAAA+GGG - chr1_1:69695746-69695765 Msa0039750:intron 10.0%
!! ATATTTGCATATTAAAAAAA+TGG + chr1_1:69699092-69699111 None:intergenic 10.0%
!! ATATATACTAATCAAAATTT+CGG + chr1_1:69700269-69700288 None:intergenic 10.0%
!!! TTTAAATTTTAATGAAATTC+TGG + chr1_1:69700651-69700670 None:intergenic 10.0%
!!! TTCTAAAAAAATTAAAATTC+TGG + chr1_1:69700694-69700713 None:intergenic 10.0%
!! TAAAAAAGATTAAAAAATTC+TGG + chr1_1:69700739-69700758 None:intergenic 10.0%
!! AATAAAAATGAAAAAAAATC+CGG + chr1_1:69700871-69700890 None:intergenic 10.0%
!! GAAAAAAAATAAAAAAAATC+TGG + chr1_1:69700908-69700927 None:intergenic 10.0%
!! TGAAAAATTAAAAAAAATTC+TGG + chr1_1:69700990-69701009 None:intergenic 10.0%
!!! ATAATGAATTTCTTTTTTTT+TGG + chr1_1:69702528-69702547 None:intergenic 10.0%
!! CAATAATTAAAATTAAAGAT+TGG + chr1_1:69703785-69703804 None:intergenic 10.0%
!! AAAAAAAACAAAAGAAAAGA+AGG + chr1_1:69695139-69695158 None:intergenic 15.0%
!!! CTTATTTTATTTTTTTGGTA+TGG + chr1_1:69695647-69695666 None:intergenic 15.0%
!! GAAAGATAAAGTTTAATAAA+AGG - chr1_1:69695745-69695764 Msa0039750:intron 15.0%
!!! TTCTTTTATTTCATACTAAT+TGG - chr1_1:69695968-69695987 Msa0039750:intron 15.0%
!! TATATCTATGTCTATTTATT+AGG - chr1_1:69696414-69696433 Msa0039750:intron 15.0%
!! AATTCAACAATAAAAAAAAG+AGG + chr1_1:69696813-69696832 None:intergenic 15.0%
!! GAAAAAAATTGAAAAAATTC+TGG - chr1_1:69699905-69699924 Msa0039750:intron 15.0%
!! GAAAAATAATGAAAAAATTC+TGG - chr1_1:69700169-69700188 Msa0039750:intron 15.0%
!!! ATTTTTGTGTATTTATAAAC+CGG + chr1_1:69700358-69700377 None:intergenic 15.0%
!!! ATTTTCATTAGTATTTTTTC+CGG + chr1_1:69700383-69700402 None:intergenic 15.0%
!! CAAAAATAAAAATGAAATTC+TGG + chr1_1:69700573-69700592 None:intergenic 15.0%
!! ATTCTCAAAAATAAAAATTC+TGG + chr1_1:69700626-69700645 None:intergenic 15.0%
!! CTGAAAAAATTTAAAAAATC+TGG + chr1_1:69700093-69700112 None:intergenic 15.0%
!!! TTTTTTAATTTTTCAAGTTC+AGG - chr1_1:69700995-69701014 Msa0039750:intron 15.0%
!!! TTTTTAATTTTTCAAGTTCA+GGG - chr1_1:69700996-69701015 Msa0039750:intron 15.0%
!! AAGTTAAAAGAAAATGAATA+TGG - chr1_1:69701218-69701237 Msa0039750:intron 15.0%
!!! CATTTTATATATCATAAGTT+AGG + chr1_1:69702585-69702604 None:intergenic 15.0%
!! ATAATAATAAATTGTTCAAC+TGG + chr1_1:69702614-69702633 None:intergenic 15.0%
!! TATAATTTATGTATAGATCA+TGG - chr1_1:69703466-69703485 Msa0039750:CDS 15.0%
!! AAAAAGCAAATGAAAAATAA+AGG + chr1_1:69704704-69704723 None:intergenic 15.0%
!! TTCATTGTTTACATATATAT+AGG - chr1_1:69706308-69706327 Msa0039750:five_prime_UTR 15.0%
!! TCATTGTTTACATATATATA+GGG - chr1_1:69706309-69706328 Msa0039750:five_prime_UTR 15.0%
!! TTGTATTCTTCTATTCAAAA+GGG + chr1_1:69694910-69694929 None:intergenic 20.0%
!! TTTGTATTCTTCTATTCAAA+AGG + chr1_1:69694911-69694930 None:intergenic 20.0%
!!! TTTGAGATTTTTCTGATATT+GGG - chr1_1:69695232-69695251 Msa0039750:three_prime_UTR 20.0%
!! GCATAGAAATAAAATCATAA+TGG - chr1_1:69695346-69695365 Msa0039750:three_prime_UTR 20.0%
!! TAGAAATAAAATCATAATGG+TGG - chr1_1:69695349-69695368 Msa0039750:three_prime_UTR 20.0%
!! AGAAATAAAATCATAATGGT+GGG - chr1_1:69695350-69695369 Msa0039750:three_prime_UTR 20.0%
!!! TTAATTTTTGACACTGAATT+AGG - chr1_1:69695477-69695496 Msa0039750:three_prime_UTR 20.0%
!! ACTGAATTAGGAAAATAAAT+GGG - chr1_1:69695489-69695508 Msa0039750:three_prime_UTR 20.0%
!! CTTCTAATATTGAATAAGTT+AGG - chr1_1:69695560-69695579 Msa0039750:three_prime_UTR 20.0%
!! TGTATTCTTGCTAAATAATT+TGG - chr1_1:69695621-69695640 Msa0039750:three_prime_UTR 20.0%
!! ATAAAAGAATCATTTCACAT+GGG + chr1_1:69695957-69695976 None:intergenic 20.0%
!! AATAAAAGAATCATTTCACA+TGG + chr1_1:69695958-69695977 None:intergenic 20.0%
!! ATATTTGAACAAATCAAACA+TGG + chr1_1:69696468-69696487 None:intergenic 20.0%
!!! CTGAATGATTGTTTTAAAAA+AGG - chr1_1:69696550-69696569 Msa0039750:intron 20.0%
!! AAAATTTACCTTTATGACAT+CGG + chr1_1:69697514-69697533 None:intergenic 20.0%
!! AAATCTGAGTTAAATAACTT+TGG + chr1_1:69697797-69697816 None:intergenic 20.0%
!!! TTTTTGAAATTTTTCCGTAT+CGG + chr1_1:69698999-69699018 None:intergenic 20.0%
!!! TTTCCTTTTCTAAGAAATTA+GGG + chr1_1:69699292-69699311 None:intergenic 20.0%
!! ACATTTCCTTTATCTTTATT+TGG + chr1_1:69699356-69699375 None:intergenic 20.0%
!! ATTGATGAAACTTACAATTT+CGG + chr1_1:69701166-69701185 None:intergenic 20.0%
!!! ATTTTTCTGTTAACTGTTTA+CGG - chr1_1:69699825-69699844 Msa0039750:intron 20.0%
!! TATTTATAAACCGAGAATAA+GGG + chr1_1:69700323-69700342 None:intergenic 20.0%
!!! TTTTTGTGTATTTATAAACC+GGG + chr1_1:69700331-69700350 None:intergenic 20.0%
!! TATAAATACACAAAAATTCC+CGG - chr1_1:69700361-69700380 Msa0039750:intron 20.0%
!!! TTTTCATTAGTATTTTTTCC+GGG + chr1_1:69700382-69700401 None:intergenic 20.0%
!! TATTTATAAACCGAGAATAA+GGG + chr1_1:69700323-69700342 None:intergenic 20.0%
!! TATAAATACACAAAAATTCC+CGG - chr1_1:69700361-69700380 Msa0039750:intron 20.0%
!! AGTATTTCTCAAAAAATTTC+CGG + chr1_1:69700501-69700520 None:intergenic 20.0%
!!! TTTTAATTTTTCAAGTTCAG+GGG - chr1_1:69700997-69701016 Msa0039750:intron 20.0%
!!! ATTTTTCTGTTAACTGTTTA+CGG + chr1_1:69699825-69699844 None:intergenic 20.0%
!! ATTGATGAAACTTACAATTT+CGG - chr1_1:69701166-69701185 Msa0039750:intron 20.0%
!! GTTTGTTTGTTTGTATTTAT+AGG + chr1_1:69701315-69701334 None:intergenic 20.0%
!! ACAAACAAACAATGTAAAAA+AGG - chr1_1:69701333-69701352 Msa0039750:intron 20.0%
!!! TCGAATATTTTACTGTAATT+TGG + chr1_1:69701518-69701537 None:intergenic 20.0%
!! ATTATAAGAAAAGTCACTAA+CGG - chr1_1:69701708-69701727 Msa0039750:intron 20.0%
!! TGTAGTTAACATTAAAATCT+CGG + chr1_1:69702005-69702024 None:intergenic 20.0%
!!! ATCCTCTTTTGATTTTTTTT+TGG - chr1_1:69702196-69702215 Msa0039750:intron 20.0%
!! AAAATTCACCTTAAAGATTA+AGG + chr1_1:69703626-69703645 None:intergenic 20.0%
!!! TTAAACAAATTTTGCCTATA+GGG + chr1_1:69703681-69703700 None:intergenic 20.0%
!!! ATTTTATCTCATTGAATGAT+TGG - chr1_1:69703712-69703731 Msa0039750:CDS 20.0%
!!! GTATGCATTTTTATTTTGAT+TGG - chr1_1:69704399-69704418 Msa0039750:intron 20.0%
!! TCATATTTACTGAATAAAGT+TGG - chr1_1:69704443-69704462 Msa0039750:intron 20.0%
!! AAAAATAAAGGAATAGGAAT+AGG + chr1_1:69704692-69704711 None:intergenic 20.0%
!! CAAATGAAAAATAAAGGAAT+AGG + chr1_1:69704698-69704717 None:intergenic 20.0%
!! TATCTCGAACATTATTTAAA+TGG - chr1_1:69704791-69704810 Msa0039750:intron 20.0%
!!! ATTATTTAAATGGATTAGTC+TGG - chr1_1:69704801-69704820 Msa0039750:intron 20.0%
!! TTGATACACAAAAATATCAA+CGG - chr1_1:69704829-69704848 Msa0039750:intron 20.0%
!!! ATAATATACTACTTTTTAGC+TGG - chr1_1:69705008-69705027 Msa0039750:CDS 20.0%
!! TGATACTATCAATCTTATAT+AGG - chr1_1:69705036-69705055 Msa0039750:CDS 20.0%
!! AGTATAATCAACTTATACAA+CGG + chr1_1:69705339-69705358 None:intergenic 20.0%
!! TAATACAATTGACTAATTGA+GGG + chr1_1:69705933-69705952 None:intergenic 20.0%
!! ATAATACAATTGACTAATTG+AGG + chr1_1:69705934-69705953 None:intergenic 20.0%
!! TTCATCAAATATTACCATAA+GGG + chr1_1:69706170-69706189 None:intergenic 20.0%
!! TTTCATCAAATATTACCATA+AGG + chr1_1:69706171-69706190 None:intergenic 20.0%
!!! ATGAGTTGATTTTAAAAGCT+TGG + chr1_1:69694937-69694956 None:intergenic 25.0%
!!! CTTTGAGATTTTTCTGATAT+TGG - chr1_1:69695231-69695250 Msa0039750:three_prime_UTR 25.0%
!!! TATTGGGTTTCTGTTTTTAT+TGG - chr1_1:69695248-69695267 Msa0039750:three_prime_UTR 25.0%
! GAAATAAAATCATAATGGTG+GGG - chr1_1:69695351-69695370 Msa0039750:three_prime_UTR 25.0%
! CACTGAATTAGGAAAATAAA+TGG - chr1_1:69695488-69695507 Msa0039750:three_prime_UTR 25.0%
! AATGAATTTAGTTGTGATCT+AGG - chr1_1:69695796-69695815 Msa0039750:intron 25.0%
! TACATGTACTTTATGAAGTT+TGG - chr1_1:69695904-69695923 Msa0039750:intron 25.0%
! ATTTCATACTAATTGGCATA+AGG - chr1_1:69695975-69695994 Msa0039750:intron 25.0%
! ATCTATGTCTATTTATTAGG+TGG - chr1_1:69696417-69696436 Msa0039750:intron 25.0%
! CAATACAGATTTCTTAACTA+TGG + chr1_1:69696491-69696510 None:intergenic 25.0%
! CTGTATTGTTATAGACTTAT+AGG - chr1_1:69696503-69696522 Msa0039750:intron 25.0%
! AAAGATATTCCTCAAAATGA+AGG + chr1_1:69696696-69696715 None:intergenic 25.0%
! TACAAGTACATGATATTTCT+AGG + chr1_1:69696856-69696875 None:intergenic 25.0%
! TTAGGAATATGAATCTATGT+TGG - chr1_1:69696920-69696939 Msa0039750:intron 25.0%
! TTAGGAATATGAATCAATGT+TGG - chr1_1:69696960-69696979 Msa0039750:intron 25.0%
! CAAAATAATGTTGATACATC+TGG - chr1_1:69697070-69697089 Msa0039750:intron 25.0%
! ATTATACAGACTTAAACCAA+AGG + chr1_1:69697286-69697305 None:intergenic 25.0%
!!! TTTTAACTTAAACTGATTGC+AGG - chr1_1:69697305-69697324 Msa0039750:intron 25.0%
!! GAAAAAAGAATGACTTGTAA+TGG + chr1_1:69697580-69697599 None:intergenic 25.0%
! TAAGAAAATAACACTTCAGA+TGG + chr1_1:69697614-69697633 None:intergenic 25.0%
! AATACAACATCATCATCATA+AGG + chr1_1:69697689-69697708 None:intergenic 25.0%
!! CAATTAGAAGTTTGAGATTA+GGG + chr1_1:69697727-69697746 None:intergenic 25.0%
!! ACAATTAGAAGTTTGAGATT+AGG + chr1_1:69697728-69697747 None:intergenic 25.0%
! AAACTTCTAATTGTTACTGA+AGG - chr1_1:69697734-69697753 Msa0039750:intron 25.0%
! AACTTCTAATTGTTACTGAA+GGG - chr1_1:69697735-69697754 Msa0039750:intron 25.0%
! CAAAGAAAATAATGCAATGA+GGG + chr1_1:69697845-69697864 None:intergenic 25.0%
! AGAAAAAAGTTATGAACGTT+CGG - chr1_1:69698216-69698235 Msa0039750:three_prime_UTR 25.0%
!!! TTATTTTATGTTGCAGAATG+AGG - chr1_1:69698251-69698270 Msa0039750:three_prime_UTR 25.0%
!! TACTACATTTTATAACAGCT+GGG + chr1_1:69698400-69698419 None:intergenic 25.0%
!! ATACTACATTTTATAACAGC+TGG + chr1_1:69698401-69698420 None:intergenic 25.0%
! TAAGATTCTGCAATAAAACA+AGG - chr1_1:69698610-69698629 Msa0039750:intron 25.0%
! AAGATTCTGCAATAAAACAA+GGG - chr1_1:69698611-69698630 Msa0039750:intron 25.0%
! TCAAAAATCAAGATACGATA+CGG - chr1_1:69699012-69699031 Msa0039750:intron 25.0%
! AAACCCTAATTTCTTAGAAA+AGG - chr1_1:69699286-69699305 Msa0039750:intron 25.0%
!!! CTTTCCTTTTCTAAGAAATT+AGG + chr1_1:69699293-69699312 None:intergenic 25.0%
! TTTAATATTTGGATACTCTC+TGG - chr1_1:69699520-69699539 Msa0039750:intron 25.0%
! TTGATGAAACTTACAATTTC+GGG + chr1_1:69701167-69701186 None:intergenic 25.0%
! ACAGTTAACAGAAAAATTGA+CGG + chr1_1:69701073-69701092 None:intergenic 25.0%
! ACATAAGTGTAAAATTTCAG+GGG + chr1_1:69701029-69701048 None:intergenic 25.0%
! CACATAAGTGTAAAATTTCA+GGG + chr1_1:69701028-69701047 None:intergenic 25.0%
!! TTTTACACTTATGTGCAAAA+TGG - chr1_1:69699871-69699890 Msa0039750:intron 25.0%
!!! ATGTCGAAATTTTGAAATTC+TGG - chr1_1:69700220-69700239 Msa0039750:intron 25.0%
!!! TGTATTTTTTCCCTTATTCT+CGG - chr1_1:69700310-69700329 Msa0039750:intron 25.0%
! GTATTTATAAACCGAGAATA+AGG + chr1_1:69700324-69700343 None:intergenic 25.0%
! ATAAATACACAAAAAGTTCC+CGG - chr1_1:69700336-69700355 Msa0039750:intron 25.0%
! ATACATAAAAAACCTAAGCT+CGG - chr1_1:69700419-69700438 Msa0039750:intron 25.0%
!!! CATATTTTTTCCCTTATTCT+CGG - chr1_1:69700454-69700473 Msa0039750:intron 25.0%
! GTATTTATAAACCGAGAATA+AGG + chr1_1:69700324-69700343 None:intergenic 25.0%
! GTATTTCTCAAAAAATTTCC+GGG + chr1_1:69700500-69700519 None:intergenic 25.0%
!!! TTTAATTTTTCAAGTTCAGG+GGG - chr1_1:69700998-69701017 Msa0039750:intron 25.0%
! CACATAAGTGTAAAATTTCA+GGG - chr1_1:69701028-69701047 Msa0039750:intron 25.0%
! ACATAAGTGTAAAATTTCAG+GGG - chr1_1:69701029-69701048 Msa0039750:intron 25.0%
! ACAGTTAACAGAAAAATTGA+CGG - chr1_1:69701073-69701092 Msa0039750:intron 25.0%
! ATTAACGTTATGCAATTTCA+GGG - chr1_1:69701109-69701128 Msa0039750:intron 25.0%
! TTGATGAAACTTACAATTTC+GGG - chr1_1:69701167-69701186 Msa0039750:intron 25.0%
! ACTTAAAAAAACGAGTGAAT+AGG + chr1_1:69701202-69701221 None:intergenic 25.0%
! GAATTTAGTAACAGTATAGA+TGG + chr1_1:69701254-69701273 None:intergenic 25.0%
! TAATCAATTGGTTAAAGGAA+GGG + chr1_1:69701278-69701297 None:intergenic 25.0%
! TTAATCAATTGGTTAAAGGA+AGG + chr1_1:69701279-69701298 None:intergenic 25.0%
! GTAGTTAATCAATTGGTTAA+AGG + chr1_1:69701283-69701302 None:intergenic 25.0%
! AATGCTAGTAGTTAATCAAT+TGG + chr1_1:69701290-69701309 None:intergenic 25.0%
! CAAACAATGTAAAAAAGGAT+CGG - chr1_1:69701338-69701357 Msa0039750:intron 25.0%
! TTACAAGATATGAACAAAAG+AGG - chr1_1:69701593-69701612 Msa0039750:intron 25.0%
! TACAAGATATGAACAAAAGA+GGG - chr1_1:69701594-69701613 Msa0039750:intron 25.0%
! TGAGTTTGATTGTCTAAAAA+AGG - chr1_1:69702048-69702067 Msa0039750:intron 25.0%
!!! TTTTTGTTTAAAGAGCCTAA+TGG + chr1_1:69702129-69702148 None:intergenic 25.0%
! GTCCAAAAAAAAATCAAAAG+AGG + chr1_1:69702201-69702220 None:intergenic 25.0%
!!! GAATTTCTTTTTTTTTGGTC+AGG + chr1_1:69702523-69702542 None:intergenic 25.0%
!! TGTACTGTATAATTTTGTTG+CGG - chr1_1:69702812-69702831 Msa0039750:intron 25.0%
! ATGAATCAACTAAGTAATGA+TGG + chr1_1:69703120-69703139 None:intergenic 25.0%
!! CATAAAGAATGTGATAATGT+AGG + chr1_1:69703221-69703240 None:intergenic 25.0%
! CTGAAAATGTTAGAATACTA+AGG - chr1_1:69703297-69703316 Msa0039750:intron 25.0%
! ATAGATTCTATCCATAAACA+TGG + chr1_1:69703368-69703387 None:intergenic 25.0%
! AGTATTGTTAATATAGAACG+AGG - chr1_1:69703541-69703560 Msa0039750:CDS 25.0%
! TTTACAGCCAATTAATTAAC+TGG - chr1_1:69703591-69703610 Msa0039750:intron 25.0%
! ATTGAGTCCAGTTAATTAAT+TGG + chr1_1:69703601-69703620 None:intergenic 25.0%
!! GTTAAACAAATTTTGCCTAT+AGG + chr1_1:69703682-69703701 None:intergenic 25.0%
! ATTCCATCATAACTTCAAAA+AGG - chr1_1:69703952-69703971 Msa0039750:intron 25.0%
! ACATTAAAGTAAATACCTTC+CGG + chr1_1:69704109-69704128 None:intergenic 25.0%
! TTTCATTATGTGAACATGTT+AGG - chr1_1:69704150-69704169 Msa0039750:CDS 25.0%
! TTCATTATGTGAACATGTTA+GGG - chr1_1:69704151-69704170 Msa0039750:CDS 25.0%
! CTGCAATAGATAAGATAATT+TGG - chr1_1:69704273-69704292 Msa0039750:intron 25.0%
! CAGTCTTAATAACTAAATGA+AGG - chr1_1:69704542-69704561 Msa0039750:intron 25.0%
! TCAATAAATAAATGCGAGAA+GGG + chr1_1:69704596-69704615 None:intergenic 25.0%
! TTCAATAAATAAATGCGAGA+AGG + chr1_1:69704597-69704616 None:intergenic 25.0%
! TCGCATTTATTTATTGAACT+AGG - chr1_1:69704599-69704618 Msa0039750:intron 25.0%
! TGATACACAAAAATATCAAC+GGG - chr1_1:69704830-69704849 Msa0039750:intron 25.0%
! AAAGTCAACTTCCAATTAAA+AGG - chr1_1:69705682-69705701 Msa0039750:intron 25.0%
! AACTTCCAATTAAAAGGAAA+GGG - chr1_1:69705688-69705707 Msa0039750:intron 25.0%
! TATACCTTGTACATAAAGTA+TGG + chr1_1:69705861-69705880 None:intergenic 25.0%
! AACATATCAATATGTTGAGT+TGG - chr1_1:69706049-69706068 Msa0039750:intron 25.0%
! GGTAATATTTGATGAAACAA+CGG - chr1_1:69706174-69706193 Msa0039750:five_prime_UTR 25.0%
! TTGTTTACATATATATAGGG+AGG - chr1_1:69706312-69706331 Msa0039750:five_prime_UTR 25.0%
! TGTTTACATATATATAGGGA+GGG - chr1_1:69706313-69706332 Msa0039750:five_prime_UTR 25.0%
TTACACAAAGAAAGAAGGAA+GGG + chr1_1:69694985-69695004 None:intergenic 30.0%
ATTACACAAAGAAAGAAGGA+AGG + chr1_1:69694986-69695005 None:intergenic 30.0%
CACAATTACACAAAGAAAGA+AGG + chr1_1:69694990-69695009 None:intergenic 30.0%
TCGTATATTCGTTCGTTATT+TGG - chr1_1:69695174-69695193 Msa0039750:three_prime_UTR 30.0%
TATTCGTTCGTTATTTGGAT+TGG - chr1_1:69695179-69695198 Msa0039750:three_prime_UTR 30.0%
AAGAACAAGCGCTATAAAAA+GGG + chr1_1:69695307-69695326 None:intergenic 30.0%
TGTATAGAACACTATGGAAA+TGG + chr1_1:69695395-69695414 None:intergenic 30.0%
AACTACTGTATAGAACACTA+TGG + chr1_1:69695401-69695420 None:intergenic 30.0%
! ATATGTTAAGCTTGCTTGTT+AGG - chr1_1:69695705-69695724 Msa0039750:three_prime_UTR 30.0%
ACTTTATGAAGTTTGGCTAT+TGG - chr1_1:69695911-69695930 Msa0039750:intron 30.0%
! TGTGGGTTAAGAAAATTTAC+TGG + chr1_1:69696067-69696086 None:intergenic 30.0%
TTGAACAAATCAAACATGGA+AGG + chr1_1:69696464-69696483 None:intergenic 30.0%
AATTCCCTAAAAAATGAGCT+TGG - chr1_1:69696639-69696658 Msa0039750:intron 30.0%
ATTCCCTAAAAAATGAGCTT+GGG - chr1_1:69696640-69696659 Msa0039750:intron 30.0%
!!! ATTCCCAAGCTCATTTTTTA+GGG + chr1_1:69696646-69696665 None:intergenic 30.0%
GAATGTAACATTGTCATGTT+TGG - chr1_1:69696662-69696681 Msa0039750:intron 30.0%
! GTTAAAGTTCCTTCATTTTG+AGG - chr1_1:69696684-69696703 Msa0039750:intron 30.0%
! TCGTCTATTTTCTATTCTCA+TGG - chr1_1:69696724-69696743 Msa0039750:intron 30.0%
AATCGGATTTATAGTTGGTT+AGG + chr1_1:69696769-69696788 None:intergenic 30.0%
AAGAGGAAAAAAGTAGAACA+GGG + chr1_1:69696796-69696815 None:intergenic 30.0%
AAAGAGGAAAAAAGTAGAAC+AGG + chr1_1:69696797-69696816 None:intergenic 30.0%
!! CTACAAGAAGTATTATTCCT+AGG + chr1_1:69696886-69696905 None:intergenic 30.0%
! GTAGCAGTATACTCAATTTT+AGG - chr1_1:69696902-69696921 Msa0039750:intron 30.0%
! GCTGAGAAATTCTGAATTTT+AGG - chr1_1:69696942-69696961 Msa0039750:intron 30.0%
AGATGAATTTGGGTATATGT+TGG - chr1_1:69697033-69697052 Msa0039750:intron 30.0%
TAAACAGAGATGGAAATTCA+AGG + chr1_1:69697244-69697263 None:intergenic 30.0%
! CCACATTTTATAAACAGAGA+TGG + chr1_1:69697254-69697273 None:intergenic 30.0%
CCATCTCTGTTTATAAAATG+TGG - chr1_1:69697251-69697270 Msa0039750:intron 30.0%
ACTTAAACCAAAGGTCTTTA+TGG + chr1_1:69697277-69697296 None:intergenic 30.0%
CAGGCTAAAATATTCCATTA+TGG - chr1_1:69697324-69697343 Msa0039750:three_prime_UTR 30.0%
!!! CAGATTTTAATTGTCTGAAG+AGG - chr1_1:69697810-69697829 Msa0039750:intron 30.0%
GCAAAGAAAATAATGCAATG+AGG + chr1_1:69697846-69697865 None:intergenic 30.0%
! AATTTGTGTGCAGGATTTTA+AGG - chr1_1:69698048-69698067 Msa0039750:three_prime_UTR 30.0%
! ATTTGTGTGCAGGATTTTAA+GGG - chr1_1:69698049-69698068 Msa0039750:three_prime_UTR 30.0%
GAATTACCTCGAAAATACTT+GGG + chr1_1:69698165-69698184 None:intergenic 30.0%
TGAATTACCTCGAAAATACT+TGG + chr1_1:69698166-69698185 None:intergenic 30.0%
CTATATTTCGCAAATGTATG+TGG - chr1_1:69698291-69698310 Msa0039750:three_prime_UTR 30.0%
! ACTACATTTTATAACAGCTG+GGG + chr1_1:69698399-69698418 None:intergenic 30.0%
AAAACAAGGGAAATGTTAAC+CGG - chr1_1:69698624-69698643 Msa0039750:intron 30.0%
ACTTTGACAGATTTCAGATT+TGG - chr1_1:69698858-69698877 Msa0039750:intron 30.0%
CTTCACAGGTTAAAAGTAAT+AGG + chr1_1:69698932-69698951 None:intergenic 30.0%
ATTAACAAACACAAGAAACC+AGG - chr1_1:69699112-69699131 Msa0039750:intron 30.0%
!! TTCAACTTTTTCTTCCAAAG+TGG + chr1_1:69699268-69699287 None:intergenic 30.0%
TGATGAAACTTACAATTTCG+GGG + chr1_1:69701168-69701187 None:intergenic 30.0%
TTGATGTTTCGTTAACTACA+GGG + chr1_1:69701138-69701157 None:intergenic 30.0%
ATTGATGTTTCGTTAACTAC+AGG + chr1_1:69701137-69701156 None:intergenic 30.0%
GATTAACGTTATGCAATTTC+AGG + chr1_1:69701108-69701127 None:intergenic 30.0%
TTAACAGAAAAATTGACGGA+GGG + chr1_1:69701077-69701096 None:intergenic 30.0%
CATAAGTGTAAAATTTCAGG+GGG + chr1_1:69701030-69701049 None:intergenic 30.0%
GCACATAAGTGTAAAATTTC+AGG + chr1_1:69701027-69701046 None:intergenic 30.0%
TTAGTATATATGTCGAGCTT+AGG - chr1_1:69700278-69700297 Msa0039750:intron 30.0%
TGTATTTATAAACCGAGCTT+AGG + chr1_1:69700434-69700453 None:intergenic 30.0%
GCACATAAGTGTAAAATTTC+AGG - chr1_1:69701027-69701046 Msa0039750:intron 30.0%
CATAAGTGTAAAATTTCAGG+GGG - chr1_1:69701030-69701049 Msa0039750:intron 30.0%
ATAAGTGTAAAATTTCAGGG+GGG - chr1_1:69701031-69701050 Msa0039750:intron 30.0%
TTAACAGAAAAATTGACGGA+GGG - chr1_1:69701077-69701096 Msa0039750:intron 30.0%
GATTAACGTTATGCAATTTC+AGG - chr1_1:69701108-69701127 Msa0039750:intron 30.0%
TTAACGTTATGCAATTTCAG+GGG - chr1_1:69701110-69701129 Msa0039750:intron 30.0%
ATTGATGTTTCGTTAACTAC+AGG - chr1_1:69701137-69701156 Msa0039750:intron 30.0%
TTGATGTTTCGTTAACTACA+GGG - chr1_1:69701138-69701157 Msa0039750:intron 30.0%
TGATGAAACTTACAATTTCG+GGG - chr1_1:69701168-69701187 Msa0039750:intron 30.0%
AATCAATTGGTTAAAGGAAG+GGG + chr1_1:69701277-69701296 None:intergenic 30.0%
GACAATGCATTATATATGCA+GGG - chr1_1:69702431-69702450 Msa0039750:intron 30.0%
ACAATGCATTATATATGCAG+GGG - chr1_1:69702432-69702451 Msa0039750:intron 30.0%
ACCTTATAAGGTGAATAAGT+GGG + chr1_1:69702480-69702499 None:intergenic 30.0%
!! ACACACACCTTTTTCATATT+CGG - chr1_1:69702892-69702911 Msa0039750:CDS 30.0%
TGCAATATGCTATGAAATGA+AGG - chr1_1:69703239-69703258 Msa0039750:intron 30.0%
! AAATGAAGGAAGTAGTCTTA+AGG - chr1_1:69703253-69703272 Msa0039750:intron 30.0%
ACACTAGTAATCCATGTTTA+TGG - chr1_1:69703354-69703373 Msa0039750:intron 30.0%
TATGGATAGAATCTATACCA+TGG - chr1_1:69703372-69703391 Msa0039750:intron 30.0%
ACACTGTAATCTATATTCCA+TGG + chr1_1:69703392-69703411 None:intergenic 30.0%
ATTGGCTGTAAAAAAGTTCT+CGG + chr1_1:69703583-69703602 None:intergenic 30.0%
CTCAATCACCTTAATCTTTA+AGG - chr1_1:69703615-69703634 Msa0039750:intron 30.0%
!! AGGTGAATTTTTAGATACCT+TGG - chr1_1:69703635-69703654 Msa0039750:intron 30.0%
! TTTTTAGATACCTTGGAGTT+TGG - chr1_1:69703642-69703661 Msa0039750:intron 30.0%
TCATTGAATGATTGGATGAT+GGG - chr1_1:69703720-69703739 Msa0039750:CDS 30.0%
TTAAAGATTGGTGAACACAA+TGG + chr1_1:69703773-69703792 None:intergenic 30.0%
!!! ACTCACAAACCTGATTTTTT+GGG + chr1_1:69703919-69703938 None:intergenic 30.0%
!!! TACTCACAAACCTGATTTTT+TGG + chr1_1:69703920-69703939 None:intergenic 30.0%
!!! CAACCTTTTTGAAGTTATGA+TGG + chr1_1:69703958-69703977 None:intergenic 30.0%
!! CTTTGCTTTTCTTTTGTACA+TGG - chr1_1:69703992-69704011 Msa0039750:intron 30.0%
TTTCTTTCTCAAATGCTCAA+GGG + chr1_1:69704033-69704052 None:intergenic 30.0%
! TTTTCTTTCTCAAATGCTCA+AGG + chr1_1:69704034-69704053 None:intergenic 30.0%
CATTAAAGTAAATACCTTCC+GGG + chr1_1:69704108-69704127 None:intergenic 30.0%
TGAAAATAGCAGGAGAAAAA+TGG + chr1_1:69704135-69704154 None:intergenic 30.0%
GTTCACATAATGAAAATAGC+AGG + chr1_1:69704145-69704164 None:intergenic 30.0%
TCATTATGTGAACATGTTAG+GGG - chr1_1:69704152-69704171 Msa0039750:CDS 30.0%
TCTTATCTATTGCAGCAATT+TGG + chr1_1:69704268-69704287 None:intergenic 30.0%
AATAAATAAATGCGAGAAGG+GGG + chr1_1:69704594-69704613 None:intergenic 30.0%
CAATAAATAAATGCGAGAAG+GGG + chr1_1:69704595-69704614 None:intergenic 30.0%
ATGTGAAGATTTGAGCAATT+TGG - chr1_1:69704963-69704982 Msa0039750:intron 30.0%
TATTACATCTGCATAGTTAC+TGG - chr1_1:69705184-69705203 Msa0039750:intron 30.0%
TATACAACGGAATACTTAAG+AGG + chr1_1:69705326-69705345 None:intergenic 30.0%
! ACAATCTTGTCAAATTTGCT+TGG - chr1_1:69705364-69705383 Msa0039750:intron 30.0%
! CAATCTTGTCAAATTTGCTT+GGG - chr1_1:69705365-69705384 Msa0039750:intron 30.0%
GAAACATGTATAGGTATAAC+TGG + chr1_1:69705414-69705433 None:intergenic 30.0%
GCATAGTATGAAACATGTAT+AGG + chr1_1:69705423-69705442 None:intergenic 30.0%
TCATGTGCTTGAATTATGTT+AGG - chr1_1:69705474-69705493 Msa0039750:intron 30.0%
TGCTTGAATTATGTTAGGAT+GGG - chr1_1:69705479-69705498 Msa0039750:intron 30.0%
TTTCTGACCATTACTTTGAT+CGG + chr1_1:69705599-69705618 None:intergenic 30.0%
CAACTTCCAATTAAAAGGAA+AGG - chr1_1:69705687-69705706 Msa0039750:intron 30.0%
! CAATTCCCTTTCCTTTTAAT+TGG + chr1_1:69705696-69705715 None:intergenic 30.0%
CAATTAAAAGGAAAGGGAAT+TGG - chr1_1:69705694-69705713 Msa0039750:intron 30.0%
!!! ATACATTCATTTTGGGTTAG+AGG - chr1_1:69705834-69705853 Msa0039750:intron 30.0%
! TGTATTATTTTCGCGACAAT+TGG - chr1_1:69705946-69705965 Msa0039750:intron 30.0%
TTGCAAATGTAGAAGAGGAA+AGG + chr1_1:69695051-69695070 None:intergenic 35.0%
TGGAATTGCAAATGTAGAAG+AGG + chr1_1:69695056-69695075 None:intergenic 35.0%
!! CAAAAAAGAGTGTTGGAACT+TGG + chr1_1:69695076-69695095 None:intergenic 35.0%
!!! CAAGTTCCAACACTCTTTTT+TGG - chr1_1:69695074-69695093 Msa0039750:three_prime_UTR 35.0%
AAGAAGGATGAAAAACCTGA+GGG + chr1_1:69695123-69695142 None:intergenic 35.0%
AAAGAAGGATGAAAAACCTG+AGG + chr1_1:69695124-69695143 None:intergenic 35.0%
AGAACAAGCGCTATAAAAAG+GGG + chr1_1:69695306-69695325 None:intergenic 35.0%
CAAGAACAAGCGCTATAAAA+AGG + chr1_1:69695308-69695327 None:intergenic 35.0%
! TATTTCTATGCATGCAAGCA+TGG + chr1_1:69695337-69695356 None:intergenic 35.0%
! TAGTTGATGTCAAGATCTGA+TGG - chr1_1:69695416-69695435 Msa0039750:three_prime_UTR 35.0%
TTGTGATCTAGGTTACAAAC+TGG - chr1_1:69695807-69695826 Msa0039750:intron 35.0%
TAATCACCAATTCCATGTGA+AGG - chr1_1:69695836-69695855 Msa0039750:intron 35.0%
!! AGTTTGGCTATTGGCTATTT+TGG - chr1_1:69695920-69695939 Msa0039750:intron 35.0%
! ATTGGCATAAGGATGTTTTG+TGG - chr1_1:69695986-69696005 Msa0039750:intron 35.0%
AAATCTGATGATCCCACAAA+CGG - chr1_1:69696104-69696123 Msa0039750:three_prime_UTR 35.0%
! AATAGATTTTGTGCCTACAG+TGG - chr1_1:69696175-69696194 Msa0039750:intron 35.0%
! ATAGATTTTGTGCCTACAGT+GGG - chr1_1:69696176-69696195 Msa0039750:intron 35.0%
!!! CATTCCCAAGCTCATTTTTT+AGG + chr1_1:69696647-69696666 None:intergenic 35.0%
GTGGAAATCGGATTTATAGT+TGG + chr1_1:69696774-69696793 None:intergenic 35.0%
TGTACTTGTAGATTGTACCT+AGG - chr1_1:69696866-69696885 Msa0039750:intron 35.0%
! TTCCTTACCATCTGTGTTTT+AGG - chr1_1:69697003-69697022 Msa0039750:intron 35.0%
AACCTAAAACACAGATGGTA+AGG + chr1_1:69697008-69697027 None:intergenic 35.0%
!! TTACCATCTGTGTTTTAGGT+TGG - chr1_1:69697007-69697026 Msa0039750:intron 35.0%
! TAGGTTGGATCAGATGAATT+TGG - chr1_1:69697022-69697041 Msa0039750:intron 35.0%
AGGTTGGATCAGATGAATTT+GGG - chr1_1:69697023-69697042 Msa0039750:intron 35.0%
AAGTGTAACAAAAGCCAATG+CGG + chr1_1:69697122-69697141 None:intergenic 35.0%
TTTGTTACACTTAGAGCTGA+TGG - chr1_1:69697130-69697149 Msa0039750:three_prime_UTR 35.0%
TGACCATAACCTCATTGAAA+AGG - chr1_1:69697216-69697235 Msa0039750:intron 35.0%
! GTACCTTTTCAATGAGGTTA+TGG + chr1_1:69697222-69697241 None:intergenic 35.0%
!! TTCAAGGTACCTTTTCAATG+AGG + chr1_1:69697228-69697247 None:intergenic 35.0%
TCAAACTGATGGAACCATAA+TGG + chr1_1:69697341-69697360 None:intergenic 35.0%
AGAGTCTTTAGCAATTCTCA+AGG + chr1_1:69697397-69697416 None:intergenic 35.0%
! GTATGATCCGAATTTGAGAT+TGG - chr1_1:69697431-69697450 Msa0039750:intron 35.0%
CATAGTGCCAATCTCAAATT+CGG + chr1_1:69697441-69697460 None:intergenic 35.0%
GACTGGTATAATGAGCATAT+GGG - chr1_1:69697482-69697501 Msa0039750:intron 35.0%
! AATAACACTTCAGATGGACT+CGG + chr1_1:69697608-69697627 None:intergenic 35.0%
TTTATTGCAGATCAGTGAAG+AGG - chr1_1:69697634-69697653 Msa0039750:intron 35.0%
!!! GAGGAGATTACTTTTTTGAC+TGG - chr1_1:69697653-69697672 Msa0039750:intron 35.0%
!!! GAGATTACTTTTTTGACTGG+TGG - chr1_1:69697656-69697675 Msa0039750:intron 35.0%
TAACTTTGGCAAGCTTACTT+TGG + chr1_1:69697783-69697802 None:intergenic 35.0%
TTGCTCTTTATTCTGATGTG+TGG - chr1_1:69697862-69697881 Msa0039750:intron 35.0%
TGATCACTAAATTTGTGTGC+AGG - chr1_1:69698039-69698058 Msa0039750:three_prime_UTR 35.0%
!! GCTATTTTGCATTGAATTGC+AGG + chr1_1:69698374-69698393 None:intergenic 35.0%
AATAGAAAAATACAGCCTCG+AGG + chr1_1:69698472-69698491 None:intergenic 35.0%
GAAAGATGCAATTGTTTGTG+TGG - chr1_1:69699308-69699327 Msa0039750:intron 35.0%
CTGGCACCAAATAAAGATAA+AGG - chr1_1:69699347-69699366 Msa0039750:intron 35.0%
!!! CGTCATCCATTTTGAAGTAT+CGG - chr1_1:69699600-69699619 Msa0039750:intron 35.0%
!!! GTCATCCATTTTGAAGTATC+GGG - chr1_1:69699601-69699620 Msa0039750:intron 35.0%
!!! TCATCCATTTTGAAGTATCG+GGG - chr1_1:69699602-69699621 Msa0039750:intron 35.0%
ATGAAACTTACAATTTCGGG+GGG + chr1_1:69701170-69701189 None:intergenic 35.0%
GATGAAACTTACAATTTCGG+GGG + chr1_1:69701169-69701188 None:intergenic 35.0%
TGATGTTTCGTTAACTACAG+GGG + chr1_1:69701139-69701158 None:intergenic 35.0%
AACGTTATGCAATTTCAGGA+GGG + chr1_1:69699783-69699802 None:intergenic 35.0%
TAACGTTATGCAATTTCAGG+AGG + chr1_1:69701111-69701130 None:intergenic 35.0%
TAACAGAAAAATTGACGGAG+GGG + chr1_1:69701078-69701097 None:intergenic 35.0%
GTTAACAGAAAAATTGACGG+AGG + chr1_1:69701076-69701095 None:intergenic 35.0%
GTTAACAGAAAAATTGACGG+AGG - chr1_1:69701076-69701095 Msa0039750:intron 35.0%
TAACAGAAAAATTGACGGAG+GGG - chr1_1:69701078-69701097 Msa0039750:intron 35.0%
TAACGTTATGCAATTTCAGG+GGG - chr1_1:69701111-69701130 Msa0039750:intron 35.0%
GATGAAACTTACAATTTCGG+GGG - chr1_1:69701169-69701188 Msa0039750:intron 35.0%
ATGAAACTTACAATTTCGGG+GGG - chr1_1:69701170-69701189 Msa0039750:intron 35.0%
ATCAATTGGTTAAAGGAAGG+GGG + chr1_1:69701276-69701295 None:intergenic 35.0%
ACTATGCCTTAGACAAACAT+TGG + chr1_1:69701364-69701383 None:intergenic 35.0%
!! TTCTCCACTTTTCAACACTT+AGG - chr1_1:69702092-69702111 Msa0039750:intron 35.0%
!! TCTCCACTTTTCAACACTTA+GGG - chr1_1:69702093-69702112 Msa0039750:intron 35.0%
TAGGGTTGAGTTTAACCATT+AGG - chr1_1:69702111-69702130 Msa0039750:intron 35.0%
GGACAATGCATTATATATGC+AGG - chr1_1:69702430-69702449 Msa0039750:intron 35.0%
CCTTATAAGGTGAATAAGTG+GGG + chr1_1:69702479-69702498 None:intergenic 35.0%
CACCTTATAAGGTGAATAAG+TGG + chr1_1:69702481-69702500 None:intergenic 35.0%
TGGCTAGAATTCACCTTATA+AGG + chr1_1:69702492-69702511 None:intergenic 35.0%
TTATACAGTACACGCTTTCT+TGG + chr1_1:69702804-69702823 None:intergenic 35.0%
! TTTTGATCGGAATTCCGTAA+TGG - chr1_1:69702977-69702996 Msa0039750:intron 35.0%
! ACTAAGTAATGATGGAATCG+AGG + chr1_1:69703112-69703131 None:intergenic 35.0%
GAATCAATTTCATTGTGCTG+TGG - chr1_1:69703326-69703345 Msa0039750:intron 35.0%
TTTAAGCTAATCAGCTGAAG+AGG - chr1_1:69703510-69703529 Msa0039750:CDS 35.0%
! AAATTTTGCCTATAGGGTAC+CGG + chr1_1:69703675-69703694 None:intergenic 35.0%
CTCATTGAATGATTGGATGA+TGG - chr1_1:69703719-69703738 Msa0039750:CDS 35.0%
ATATATCCGACCAAACTACA+TGG - chr1_1:69703744-69703763 Msa0039750:CDS 35.0%
TATATCCGACCAAACTACAT+GGG - chr1_1:69703745-69703764 Msa0039750:CDS 35.0%
CTATTCGAAGATTCGAAATG+TGG - chr1_1:69703846-69703865 Msa0039750:CDS 35.0%
TTGAGATGAAACTTACAGCT+GGG - chr1_1:69703893-69703912 Msa0039750:intron 35.0%
TGAACGCGAAAAGAAATCAA+TGG + chr1_1:69704361-69704380 None:intergenic 35.0%
CTTGTATTCACCTTCTCAAT+GGG + chr1_1:69704740-69704759 None:intergenic 35.0%
TCTTGTATTCACCTTCTCAA+TGG + chr1_1:69704741-69704760 None:intergenic 35.0%
GTGAATACAAGATATCCATG+TGG - chr1_1:69704749-69704768 Msa0039750:intron 35.0%
TTAGTTATACTGCATCCACA+TGG + chr1_1:69704767-69704786 None:intergenic 35.0%
GGCAGAATTAAAAAGACGAT+TGG - chr1_1:69705093-69705112 Msa0039750:CDS 35.0%
TTACCTGAGCTTCATCTATA+AGG - chr1_1:69705274-69705293 Msa0039750:intron 35.0%
GTGCTTGAATTATGTTAGGA+TGG - chr1_1:69705478-69705497 Msa0039750:intron 35.0%
ATTATGTTAGGATGGGAGAT+CGG - chr1_1:69705486-69705505 Msa0039750:intron 35.0%
AGTGTTACCGATCAAAGTAA+TGG - chr1_1:69705589-69705608 Msa0039750:intron 35.0%
! CTTTTTCCTTCGCTTTCATT+AGG + chr1_1:69705655-69705674 None:intergenic 35.0%
! CTGCTGCATACATTCATTTT+GGG - chr1_1:69705827-69705846 Msa0039750:intron 35.0%
AGGTCCATACTTTATGTACA+AGG - chr1_1:69705854-69705873 Msa0039750:intron 35.0%
TTCCAAGTTAACACTGAACA+CGG + chr1_1:69705900-69705919 None:intergenic 35.0%
ACAGCTTGCATAATCAAAAG+GGG + chr1_1:69706078-69706097 None:intergenic 35.0%
GACAGCTTGCATAATCAAAA+GGG + chr1_1:69706079-69706098 None:intergenic 35.0%
TGACAGCTTGCATAATCAAA+AGG + chr1_1:69706080-69706099 None:intergenic 35.0%
TTTGATGAAACAACGGTTGT+TGG - chr1_1:69706181-69706200 Msa0039750:five_prime_UTR 35.0%
TTGATGAAACAACGGTTGTT+GGG - chr1_1:69706182-69706201 Msa0039750:five_prime_UTR 35.0%
! GAAGAAACTAGTTTCGTGTT+TGG - chr1_1:69706207-69706226 Msa0039750:five_prime_UTR 35.0%
! AACTAGTTTCGTGTTTGGAT+AGG - chr1_1:69706212-69706231 Msa0039750:five_prime_UTR 35.0%
ATTAATGTACAATCCCACAG+TGG + chr1_1:69706274-69706293 None:intergenic 35.0%
GATCATGCAATGCAATGAAG+AGG + chr1_1:69694963-69694982 None:intergenic 40.0%
! GAGGAACCAAAAAAGAGTGT+TGG + chr1_1:69695083-69695102 None:intergenic 40.0%
!!! CTCTTTTTTGGTTCCTCAGA+TGG - chr1_1:69695086-69695105 Msa0039750:three_prime_UTR 40.0%
AGAAGGATGAAAAACCTGAG+GGG + chr1_1:69695122-69695141 None:intergenic 40.0%
TTGATGTCAAGATCTGATGG+TGG - chr1_1:69695419-69695438 Msa0039750:three_prime_UTR 40.0%
TGATGTCAAGATCTGATGGT+GGG - chr1_1:69695420-69695439 Msa0039750:three_prime_UTR 40.0%
TAAACCCAGCTCAAATCACA+TGG + chr1_1:69695460-69695479 None:intergenic 40.0%
TGATGACCTTCACATGGAAT+TGG + chr1_1:69695845-69695864 None:intergenic 40.0%
ATTCCATGTGAAGGTCATCA+TGG - chr1_1:69695845-69695864 Msa0039750:intron 40.0%
ACCTGCAAAACACGAATTGT+GGG + chr1_1:69696084-69696103 None:intergenic 40.0%
TACCTGCAAAACACGAATTG+TGG + chr1_1:69696085-69696104 None:intergenic 40.0%
!!! AGTGGACTGGTTGTTTGTTT+TGG - chr1_1:69696143-69696162 Msa0039750:three_prime_UTR 40.0%
TTTCTTGAAAGCAGGTGCTT+CGG + chr1_1:69696216-69696235 None:intergenic 40.0%
! TTCATCTGCATTTCTAGGCA+AGG - chr1_1:69696389-69696408 Msa0039750:intron 40.0%
AAGTAGAACAGGGTGGAAAT+CGG + chr1_1:69696786-69696805 None:intergenic 40.0%
AGGAAAAAAGTAGAACAGGG+TGG + chr1_1:69696793-69696812 None:intergenic 40.0%
GATCCAACCTAAAACACAGA+TGG + chr1_1:69697013-69697032 None:intergenic 40.0%
ATGTTGATACATCTGGCATG+CGG - chr1_1:69697077-69697096 Msa0039750:intron 40.0%
GCATATCAGCACTAGGATTT+CGG + chr1_1:69697177-69697196 None:intergenic 40.0%
AATGTGGCCATAAAGACCTT+TGG - chr1_1:69697267-69697286 Msa0039750:intron 40.0%
TGGCTCATCAATCAAACTGA+TGG + chr1_1:69697352-69697371 None:intergenic 40.0%
! CGAATTTGAGATTGGCACTA+TGG - chr1_1:69697439-69697458 Msa0039750:intron 40.0%
! GGACTGGTATAATGAGCATA+TGG - chr1_1:69697481-69697500 Msa0039750:intron 40.0%
AATTGTTACTGAAGGGTCAG+AGG - chr1_1:69697742-69697761 Msa0039750:intron 40.0%
ATTGTTACTGAAGGGTCAGA+GGG - chr1_1:69697743-69697762 Msa0039750:intron 40.0%
! TGATGTGTGGACTGAAATGT+TGG - chr1_1:69697875-69697894 Msa0039750:intron 40.0%
! GATGTGTGGACTGAAATGTT+GGG - chr1_1:69697876-69697895 Msa0039750:intron 40.0%
CAGGTTGTAAAACTTGAGCA+AGG - chr1_1:69697949-69697968 Msa0039750:intron 40.0%
GATCACTACTAGTTGAATGC+TGG + chr1_1:69698024-69698043 None:intergenic 40.0%
!! CAGGATTTTAAGGGCAAAGT+TGG - chr1_1:69698058-69698077 Msa0039750:intron 40.0%
!! GATTTTAAGGGCAAAGTTGG+AGG - chr1_1:69698061-69698080 Msa0039750:intron 40.0%
GTTAAACCTGTTGACACAAC+TGG - chr1_1:69698091-69698110 Msa0039750:intron 40.0%
! CTGGAGATGCATTTGTTAGT+GGG - chr1_1:69698116-69698135 Msa0039750:intron 40.0%
TACCTCGAAAATACTTGGGT+CGG + chr1_1:69698161-69698180 None:intergenic 40.0%
TTGCGAAATATAGCGCTTTC+TGG + chr1_1:69698284-69698303 None:intergenic 40.0%
! CTTTTGTATCATTGTCCTCG+AGG - chr1_1:69698454-69698473 Msa0039750:intron 40.0%
TGAGTTGCTATCTCAAGCTA+TGG - chr1_1:69698509-69698528 Msa0039750:intron 40.0%
! TACTTTTAACCTGTGAAGCC+CGG - chr1_1:69698934-69698953 Msa0039750:intron 40.0%
!! ATTTTTCCGTATCGGCGTAT+CGG + chr1_1:69698991-69699010 None:intergenic 40.0%
AAATCAAGATACGATACGGC+TGG - chr1_1:69699016-69699035 Msa0039750:intron 40.0%
AATCAAGATACGATACGGCT+GGG - chr1_1:69699017-69699036 Msa0039750:intron 40.0%
ATGCAATTGTTTGTGTGGTG+TGG - chr1_1:69699313-69699332 Msa0039750:intron 40.0%
ACACAAGTATCCGTGTGTAT+CGG - chr1_1:69699452-69699471 Msa0039750:intron 40.0%
GATACTCTCTGGATACGTAT+CGG - chr1_1:69699531-69699550 Msa0039750:intron 40.0%
ATACTCTCTGGATACGTATC+GGG - chr1_1:69699532-69699551 Msa0039750:intron 40.0%
GACATATTTGCATAGGCACT+AGG + chr1_1:69699655-69699674 None:intergenic 40.0%
AGTGCCTATGCAAATATGTC+AGG - chr1_1:69699655-69699674 Msa0039750:intron 40.0%
CCATCCTGACATATTTGCAT+AGG + chr1_1:69699662-69699681 None:intergenic 40.0%
CCTATGCAAATATGTCAGGA+TGG - chr1_1:69699659-69699678 Msa0039750:intron 40.0%
!! CAGGATGGTGTAAAAGTGTT+AGG - chr1_1:69699674-69699693 Msa0039750:intron 40.0%
GATGTTTCGTTAACTACAGG+GGG + chr1_1:69701140-69701159 None:intergenic 40.0%
AACAGAAAAATTGACGGAGG+GGG + chr1_1:69701079-69701098 None:intergenic 40.0%
AACAGAAAAATTGACGGAGG+GGG - chr1_1:69701079-69701098 Msa0039750:intron 40.0%
AACGTTATGCAATTTCAGGG+GGG - chr1_1:69701112-69701131 Msa0039750:intron 40.0%
ATGTTTCGTTAACTACAGGG+AGG - chr1_1:69701141-69701160 Msa0039750:intron 40.0%
!! CAACCCTAAGTGTTGAAAAG+TGG + chr1_1:69702099-69702118 None:intergenic 40.0%
CCCCACTTATTCACCTTATA+AGG - chr1_1:69702476-69702495 Msa0039750:intron 40.0%
TAAGGTGAATTCTAGCCACT+AGG - chr1_1:69702494-69702513 Msa0039750:intron 40.0%
!! CACCTTTTTCATATTCGGCT+CGG - chr1_1:69702897-69702916 Msa0039750:CDS 40.0%
ATCCGAGCCGAATATGAAAA+AGG + chr1_1:69702902-69702921 None:intergenic 40.0%
TTTCTTGCAGATCATCGAAG+AGG - chr1_1:69703155-69703174 Msa0039750:intron 40.0%
TCAATTTCATTGTGCTGTGG+TGG - chr1_1:69703329-69703348 Msa0039750:intron 40.0%
TAGATACCTTGGAGTTTGGT+TGG - chr1_1:69703646-69703665 Msa0039750:intron 40.0%
AGATACCTTGGAGTTTGGTT+GGG - chr1_1:69703647-69703666 Msa0039750:intron 40.0%
ACAATGGTACCCATGTAGTT+TGG + chr1_1:69703757-69703776 None:intergenic 40.0%
CTTGAGATGAAACTTACAGC+TGG - chr1_1:69703892-69703911 Msa0039750:intron 40.0%
!! GGCTTGTTCTTCTTTTAGCT+TGG + chr1_1:69704087-69704106 None:intergenic 40.0%
AGCTAAAAGAAGAACAAGCC+CGG - chr1_1:69704087-69704106 Msa0039750:CDS 40.0%
CACAAAGTCACACAGTAAGA+AGG + chr1_1:69704215-69704234 None:intergenic 40.0%
TAAAGTTGGACAGTGCATCA+AGG - chr1_1:69704457-69704476 Msa0039750:intron 40.0%
GTCTTATGTTCCCATTGAGA+AGG - chr1_1:69704727-69704746 Msa0039750:intron 40.0%
AGCAAAAGTAGTGAAGGAAG+AGG - chr1_1:69704921-69704940 Msa0039750:intron 40.0%
GAAGGAAGAGGAAGCAATAA+AGG - chr1_1:69704933-69704952 Msa0039750:intron 40.0%
GCATTAGTTGTTGTGTGACT+TGG + chr1_1:69705130-69705149 None:intergenic 40.0%
TACATCTGCATAGTTACTGG+TGG - chr1_1:69705187-69705206 Msa0039750:intron 40.0%
TCTAAGCTGTGCACCTAATT+TGG - chr1_1:69705212-69705231 Msa0039750:intron 40.0%
CTAAGCTGTGCACCTAATTT+GGG - chr1_1:69705213-69705232 Msa0039750:intron 40.0%
TAAGCTGTGCACCTAATTTG+GGG - chr1_1:69705214-69705233 Msa0039750:intron 40.0%
ATGCCTTATAGATGAAGCTC+AGG + chr1_1:69705280-69705299 None:intergenic 40.0%
AATGTCATCAGTTTCCTAGC+TGG + chr1_1:69705303-69705322 None:intergenic 40.0%
CAGGAGAGTAAAACACAAGA+TGG - chr1_1:69705520-69705539 Msa0039750:intron 40.0%
TCATTAGGAGGTAGCTGATT+AGG + chr1_1:69705640-69705659 None:intergenic 40.0%
TTTCCTTCGCTTTCATTAGG+AGG + chr1_1:69705652-69705671 None:intergenic 40.0%
! GCTGCTGCATACATTCATTT+TGG - chr1_1:69705826-69705845 Msa0039750:intron 40.0%
AAGTTAACACTGAACACGGA+CGG + chr1_1:69705896-69705915 None:intergenic 40.0%
GAGTGATTAACCTTCTGACT+TGG - chr1_1:69705977-69705996 Msa0039750:intron 40.0%
GCTATCAAAACCAAGTCAGA+AGG + chr1_1:69705990-69706009 None:intergenic 40.0%
AGTCCTCTACTACAACATTC+AGG - chr1_1:69706022-69706041 Msa0039750:intron 40.0%
TTGCCTGAATGTTGTAGTAG+AGG + chr1_1:69706028-69706047 None:intergenic 40.0%
!!! TCCATTTTGACTTGCCCTTA+TGG - chr1_1:69706153-69706172 Msa0039750:five_prime_UTR 40.0%
ACCATAAGGGCAAGTCAAAA+TGG + chr1_1:69706157-69706176 None:intergenic 40.0%
TGTGTGATAGAATTCCACTG+TGG - chr1_1:69706257-69706276 Msa0039750:five_prime_UTR 40.0%
GTGTGATAGAATTCCACTGT+GGG - chr1_1:69706258-69706277 Msa0039750:five_prime_UTR 40.0%
GAAGGATGAAAAACCTGAGG+GGG + chr1_1:69695121-69695140 None:intergenic 45.0%
! GATGTCAAGATCTGATGGTG+GGG - chr1_1:69695421-69695440 Msa0039750:three_prime_UTR 45.0%
!! TCTGATGGTGGGGTTATTTG+TGG - chr1_1:69695431-69695450 Msa0039750:three_prime_UTR 45.0%
!! CTGATGGTGGGGTTATTTGT+GGG - chr1_1:69695432-69695451 Msa0039750:three_prime_UTR 45.0%
GGATCCATGTGATTTGAGCT+GGG - chr1_1:69695453-69695472 Msa0039750:three_prime_UTR 45.0%
CAACCATGATGACCTTCACA+TGG + chr1_1:69695851-69695870 None:intergenic 45.0%
CATGTGAAGGTCATCATGGT+TGG - chr1_1:69695849-69695868 Msa0039750:intron 45.0%
! ACCCACAATTCGTGTTTTGC+AGG - chr1_1:69696080-69696099 Msa0039750:three_prime_UTR 45.0%
TCGTTGTACTCTCCGTTTGT+GGG + chr1_1:69696119-69696138 None:intergenic 45.0%
TTCGTTGTACTCTCCGTTTG+TGG + chr1_1:69696120-69696139 None:intergenic 45.0%
! GGAGAGTACAACGAAACAAG+TGG - chr1_1:69696125-69696144 Msa0039750:three_prime_UTR 45.0%
GTACAACGAAACAAGTGGAC+TGG - chr1_1:69696130-69696149 Msa0039750:three_prime_UTR 45.0%
AACAAAAGCCAATGCGGTTC+TGG + chr1_1:69697116-69697135 None:intergenic 45.0%
!! TCCTAGTGCTGATATGCTTC+TGG - chr1_1:69697180-69697199 Msa0039750:three_prime_UTR 45.0%
! TCCAGAAGCATATCAGCACT+AGG + chr1_1:69697184-69697203 None:intergenic 45.0%
GGATCTAGCCGATGTCATAA+AGG - chr1_1:69697503-69697522 Msa0039750:intron 45.0%
GATACTCGACAACGAATAGC+AGG - chr1_1:69697930-69697949 Msa0039750:intron 45.0%
! GCTGGAGATGCATTTGTTAG+TGG - chr1_1:69698115-69698134 Msa0039750:intron 45.0%
! TTCCGACCCAAGTATTTTCG+AGG - chr1_1:69698156-69698175 Msa0039750:three_prime_UTR 45.0%
! GCATCTTTTGTAGGTAGTGC+AGG + chr1_1:69698348-69698367 None:intergenic 45.0%
! TGCAGGACAGCATCTTTTGT+AGG + chr1_1:69698357-69698376 None:intergenic 45.0%
CACTAATCTGTGTTCTCAGC+TGG + chr1_1:69698558-69698577 None:intergenic 45.0%
TCCGTATCGTATCTCGTATC+CGG + chr1_1:69698956-69698975 None:intergenic 45.0%
ATGTTAATGTGCTACGAGCC+TGG + chr1_1:69699133-69699152 None:intergenic 45.0%
ATTGTTTGTGTGGTGTGGTG+TGG - chr1_1:69699318-69699337 Msa0039750:intron 45.0%
TTGTTTGTGTGGTGTGGTGT+GGG - chr1_1:69699319-69699338 Msa0039750:intron 45.0%
CACAAGTATCCGTGTGTATC+GGG - chr1_1:69699453-69699472 Msa0039750:intron 45.0%
! GGATACGTATCGGGAAGTAT+CGG - chr1_1:69699541-69699560 Msa0039750:intron 45.0%
!! GATACGTATCGGGAAGTATC+GGG - chr1_1:69699542-69699561 Msa0039750:intron 45.0%
GAAGCCCCGATACTTCAAAA+TGG + chr1_1:69699609-69699628 None:intergenic 45.0%
! TAGGCACTAGGCAAAGTGTT+CGG + chr1_1:69699643-69699662 None:intergenic 45.0%
GATCGGCCAATGTTTGTCTA+AGG - chr1_1:69701355-69701374 Msa0039750:intron 45.0%
TACCAACTGAGCTATGCTCA+CGG + chr1_1:69702410-69702429 None:intergenic 45.0%
TGCATTATATATGCAGGGGC+CGG - chr1_1:69702436-69702455 Msa0039750:intron 45.0%
!! TTTTTGGTCAGGTAGCCTAG+TGG + chr1_1:69702512-69702531 None:intergenic 45.0%
! AAAGGTGTGTGTGACGATGA+CGG + chr1_1:69702884-69702903 None:intergenic 45.0%
GCTCGGATCTTCAAATCAAC+CGG - chr1_1:69702914-69702933 Msa0039750:CDS 45.0%
TCAAATCAACCGGAAGTCGT+CGG - chr1_1:69702924-69702943 Msa0039750:CDS 45.0%
AGGGTTACTTGACGCCATTA+CGG + chr1_1:69702994-69703013 None:intergenic 45.0%
TGGTACCCATGTAGTTTGGT+CGG + chr1_1:69703753-69703772 None:intergenic 45.0%
! GGCTACACGAATTTTCTCTG+TGG + chr1_1:69704066-69704085 None:intergenic 45.0%
AAAAGAAGAACAAGCCCGGA+AGG - chr1_1:69704091-69704110 Msa0039750:CDS 45.0%
! TGTGAACATGTTAGGGGTGT+TGG - chr1_1:69704158-69704177 Msa0039750:CDS 45.0%
CACACAGTAAGAAGGTAGTG+CGG + chr1_1:69704207-69704226 None:intergenic 45.0%
AGCAGCAGCAAAAGTAGTGA+AGG - chr1_1:69704915-69704934 Msa0039750:intron 45.0%
GCAAGCATACACCCCAAATT+AGG + chr1_1:69705228-69705247 None:intergenic 45.0%
AAGTTTCCAGTGCCCAGTAA+GGG + chr1_1:69705253-69705272 None:intergenic 45.0%
! CATCTATAAGGCATCCAGCT+AGG - chr1_1:69705286-69705305 Msa0039750:intron 45.0%
GAGATCGGAAAGTTCTTCTC+AGG - chr1_1:69705501-69705520 Msa0039750:intron 45.0%
ACTTTGATCGGTAACACTCG+TGG + chr1_1:69705587-69705606 None:intergenic 45.0%
CTACCTCCTAATGAAAGCGA+AGG - chr1_1:69705646-69705665 Msa0039750:intron 45.0%
!! GGAATTGGTGCTGTGTCTAA+GGG - chr1_1:69705709-69705728 Msa0039750:intron 45.0%
!! CTGGCTTTGACGCTTGAATT+GGG - chr1_1:69705761-69705780 Msa0039750:intron 45.0%
TGACGCTTGAATTGGGTAGA+TGG - chr1_1:69705768-69705787 Msa0039750:intron 45.0%
GTCCGTGTTCAGTGTTAACT+TGG - chr1_1:69705895-69705914 Msa0039750:intron 45.0%
!!! TTTAACTTATTTTATTTTTT+TGG + chr1_1:69695652-69695671 None:intergenic 5.0%
!! AAAGTTTAAAAAAAAAAAAT+AGG + chr1_1:69696032-69696051 None:intergenic 5.0%
!! TAAAAAAAATTAAAAAATTC+TGG - chr1_1:69699937-69699956 Msa0039750:intron 5.0%
!! AAAAAAATATTAAAAAATTC+TGG - chr1_1:69699988-69700007 Msa0039750:intron 5.0%
!! ATTAATAAAAATGAAAAAAA+CGG - chr1_1:69700022-69700041 Msa0039750:intron 5.0%
!!! TTTATTTTTATTAATTTTTC+CGG - chr1_1:69700802-69700821 Msa0039750:intron 5.0%
!! AAAAAAAATTTAAAAAATTC+TGG + chr1_1:69700958-69700977 None:intergenic 5.0%
!!! GTTTTTATATATTTTATTTT+AGG + chr1_1:69702267-69702286 None:intergenic 5.0%
!!! ATTATTTTTTATAAAGTATT+TGG + chr1_1:69704861-69704880 None:intergenic 5.0%
GGGATCCATGTGATTTGAGC+TGG - chr1_1:69695452-69695471 Msa0039750:three_prime_UTR 50.0%
! GATTTTGTGCCTACAGTGGG+TGG - chr1_1:69696179-69696198 Msa0039750:intron 50.0%
CCAGGAGCTTTCTTGAAAGC+AGG + chr1_1:69696224-69696243 None:intergenic 50.0%
CCTGCTTTCAAGAAAGCTCC+TGG - chr1_1:69696221-69696240 Msa0039750:intron 50.0%
GCTTTCAAGAAAGCTCCTGG+TGG - chr1_1:69696224-69696243 Msa0039750:intron 50.0%
GCAGTTGGCATCTCTAGGTT+GGG - chr1_1:69696363-69696382 Msa0039750:intron 50.0%
CAGTTGGCATCTCTAGGTTG+GGG - chr1_1:69696364-69696383 Msa0039750:intron 50.0%
! AGTTGGCATCTCTAGGTTGG+GGG - chr1_1:69696365-69696384 Msa0039750:intron 50.0%
GGGGGTTCATCTGCATTTCT+AGG - chr1_1:69696384-69696403 Msa0039750:intron 50.0%
TTCTGATGCCAGAACCGCAT+TGG - chr1_1:69697105-69697124 Msa0039750:intron 50.0%
!! GCAAGATGAGCTGACTTGCA+TGG + chr1_1:69697372-69697391 None:intergenic 50.0%
! CTTGAGCAAGGTTTGCTTCG+AGG - chr1_1:69697961-69697980 Msa0039750:intron 50.0%
AATTGCCCCTCTCTCTGTCA+CGG + chr1_1:69698325-69698344 None:intergenic 50.0%
TTCCTTAACCAGTGCCTCTC+CGG - chr1_1:69698763-69698782 Msa0039750:intron 50.0%
TACCTTGTTAACCAGTGCCC+CGG + chr1_1:69698785-69698804 None:intergenic 50.0%
CCGTATCGTATCTCGTATCC+GGG + chr1_1:69698955-69698974 None:intergenic 50.0%
CCCGGATACGAGATACGATA+CGG - chr1_1:69698952-69698971 Msa0039750:intron 50.0%
! GTCTTGGTATCGGACGACTT+TGG + chr1_1:69699218-69699237 None:intergenic 50.0%
GTCCGATACCAAGACTTCGA+CGG - chr1_1:69699223-69699242 Msa0039750:intron 50.0%
CACCGTCGAAGTCTTGGTAT+CGG + chr1_1:69699228-69699247 None:intergenic 50.0%
! CGGGACGTATCGGAAAGTAT+CGG - chr1_1:69699472-69699491 Msa0039750:intron 50.0%
!! GGGAAGTATCGGGAAGGTAT+CGG - chr1_1:69699552-69699571 Msa0039750:intron 50.0%
ACCAACTGAGCTATGCTCAC+GGG + chr1_1:69702409-69702428 None:intergenic 50.0%
GTGAGCATAGCTCAGTTGGT+AGG - chr1_1:69702409-69702428 Msa0039750:intron 50.0%
GCATTATATATGCAGGGGCC+GGG - chr1_1:69702437-69702456 Msa0039750:intron 50.0%
CATTATATATGCAGGGGCCG+GGG - chr1_1:69702438-69702457 Msa0039750:intron 50.0%
! AGGTGAATAAGTGGGGTGTC+CGG + chr1_1:69702472-69702491 None:intergenic 50.0%
TGCGGCGTTGTTTACGTGTT+AGG - chr1_1:69702830-69702849 Msa0039750:intron 50.0%
!! GTACGCGACGGAGTTTTGAT+CGG - chr1_1:69702964-69702983 Msa0039750:intron 50.0%
CTTGGAGTTTGGTTGGGTAC+CGG - chr1_1:69703653-69703672 Msa0039750:intron 50.0%
ACAGCTGGGCCCAAAAAATC+AGG - chr1_1:69703907-69703926 Msa0039750:intron 50.0%
GCAGTCAGTCTCAGTTTGCA+CGG - chr1_1:69705068-69705087 Msa0039750:CDS 50.0%
TGTATGCTTGCCACCCTTAC+TGG - chr1_1:69705237-69705256 Msa0039750:intron 50.0%
GTATGCTTGCCACCCTTACT+GGG - chr1_1:69705238-69705257 Msa0039750:intron 50.0%
CAAGTTTCCAGTGCCCAGTA+AGG + chr1_1:69705254-69705273 None:intergenic 50.0%
TTCCTCTGTTCCCAACGCAA+GGG - chr1_1:69705543-69705562 Msa0039750:intron 50.0%
CCACTTGATTCCCTTGCGTT+GGG + chr1_1:69705556-69705575 None:intergenic 50.0%
CCAACGCAAGGGAATCAAGT+GGG - chr1_1:69705554-69705573 Msa0039750:intron 50.0%
CAACGCAAGGGAATCAAGTG+GGG - chr1_1:69705555-69705574 Msa0039750:intron 50.0%
AACGCAAGGGAATCAAGTGG+GGG - chr1_1:69705556-69705575 Msa0039750:intron 50.0%
!! GGGAATTGGTGCTGTGTCTA+AGG - chr1_1:69705708-69705727 Msa0039750:intron 50.0%
AAGGGTAGATCTTCTGCTCC+TGG - chr1_1:69705727-69705746 Msa0039750:intron 50.0%
!! GCTGGCTTTGACGCTTGAAT+TGG - chr1_1:69705760-69705779 Msa0039750:intron 50.0%
TTAACACTGAACACGGACGG+AGG + chr1_1:69705893-69705912 None:intergenic 50.0%
GGGGTAAACTGTGCCATCTG+AGG + chr1_1:69695102-69695121 None:intergenic 55.0%
ATGGCACAGTTTACCCCCTC+AGG - chr1_1:69695105-69695124 Msa0039750:three_prime_UTR 55.0%
AGAGACACTCCACCCACTGT+AGG + chr1_1:69696191-69696210 None:intergenic 55.0%
! GTTGGCATCTCTAGGTTGGG+GGG - chr1_1:69696366-69696385 Msa0039750:intron 55.0%
CCAGCACCAGTTGTGTCAAC+AGG + chr1_1:69698100-69698119 None:intergenic 55.0%
CCTGTTGACACAACTGGTGC+TGG - chr1_1:69698097-69698116 Msa0039750:intron 55.0%
CGATCACCGTGACAGAGAGA+GGG - chr1_1:69698316-69698335 Msa0039750:three_prime_UTR 55.0%
GATCACCGTGACAGAGAGAG+GGG - chr1_1:69698317-69698336 Msa0039750:three_prime_UTR 55.0%
GAAATGTTAACCGGTGCCCC+CGG - chr1_1:69698633-69698652 Msa0039750:intron 55.0%
AAATGTTAACCGGTGCCCCC+GGG - chr1_1:69698634-69698653 Msa0039750:intron 55.0%
TGCTTCCTTAACCAGTGCCC+CGG + chr1_1:69698655-69698674 None:intergenic 55.0%
TCCTTAACCAGTGCCTCTCC+GGG - chr1_1:69698764-69698783 Msa0039750:intron 55.0%
ATCTCGTATCCGGGCTTCAC+AGG + chr1_1:69698946-69698965 None:intergenic 55.0%
! ACTGCACCGATACGCCGATA+CGG - chr1_1:69698982-69699001 Msa0039750:intron 55.0%
CGATACCAAGACTTCGACGG+TGG - chr1_1:69699226-69699245 Msa0039750:intron 55.0%
TTTGGCCACCGTCGAAGTCT+TGG + chr1_1:69699234-69699253 None:intergenic 55.0%
AAAGTGGTCGCCGTCCACTT+TGG + chr1_1:69699252-69699271 None:intergenic 55.0%
AAAGTGGACGGCGACCACTT+TGG - chr1_1:69699251-69699270 Msa0039750:intron 55.0%
CCGATACGTCCCGATACACA+CGG + chr1_1:69699465-69699484 None:intergenic 55.0%
CCGTGTGTATCGGGACGTAT+CGG - chr1_1:69699462-69699481 Msa0039750:intron 55.0%
!! CGTATCGGGAAGTATCGGGA+AGG - chr1_1:69699546-69699565 Msa0039750:intron 55.0%
!! TATCGGGAAGGTATCGGTGC+AGG - chr1_1:69699558-69699577 Msa0039750:intron 55.0%
! GTATCGGTGCAGGATACGCA+GGG - chr1_1:69699568-69699587 Msa0039750:intron 55.0%
TATCGGTGCAGGATACGCAG+GGG - chr1_1:69699569-69699588 Msa0039750:intron 55.0%
TGCAGGATACGCAGGGGATA+CGG - chr1_1:69699575-69699594 Msa0039750:intron 55.0%
TCCCGTGAGCATAGCTCAGT+TGG - chr1_1:69702405-69702424 Msa0039750:intron 55.0%
! GTGAATAAGTGGGGTGTCCG+GGG + chr1_1:69702470-69702489 None:intergenic 55.0%
! GGTGAATAAGTGGGGTGTCC+GGG + chr1_1:69702471-69702490 None:intergenic 55.0%
! TGTGTGTGACGATGACGGTG+CGG + chr1_1:69702879-69702898 None:intergenic 55.0%
AGCTTCTCTGGCAAGACCGT+CGG + chr1_1:69703039-69703058 None:intergenic 55.0%
CCTCTCAGTGTAGCCGATGA+CGG + chr1_1:69703063-69703082 None:intergenic 55.0%
! CGTCATCGGCTACACTGAGA+GGG - chr1_1:69703061-69703080 Msa0039750:CDS 55.0%
CGGTACCCAACCAAACTCCA+AGG + chr1_1:69703655-69703674 None:intergenic 55.0%
!! GTTGGGTACCGGTACCCTAT+AGG - chr1_1:69703664-69703683 Msa0039750:intron 55.0%
CAGTAAGAAGGTAGTGCGGC+TGG + chr1_1:69704203-69704222 None:intergenic 55.0%
TCAGTCTCAGTTTGCACGGC+TGG - chr1_1:69705072-69705091 Msa0039750:CDS 55.0%
TTTCCAGTGCCCAGTAAGGG+TGG + chr1_1:69705250-69705269 None:intergenic 55.0%
GTTCCTCTGTTCCCAACGCA+AGG - chr1_1:69705542-69705561 Msa0039750:intron 55.0%
TTCCCTTGCGTTGGGAACAG+AGG + chr1_1:69705548-69705567 None:intergenic 55.0%
CCCAACGCAAGGGAATCAAG+TGG - chr1_1:69705553-69705572 Msa0039750:intron 55.0%
CCCACTTGATTCCCTTGCGT+TGG + chr1_1:69705557-69705576 None:intergenic 55.0%
GTAGATCTTCTGCTCCTGGC+TGG - chr1_1:69705731-69705750 Msa0039750:intron 55.0%
GGCACTATGGCCATCAGCTG+AGG - chr1_1:69697452-69697471 Msa0039750:intron 60.0%
GCGATCACCGTGACAGAGAG+AGG - chr1_1:69698315-69698334 Msa0039750:three_prime_UTR 60.0%
AATGTTAACCGGTGCCCCCG+GGG - chr1_1:69698635-69698654 Msa0039750:intron 60.0%
TTCCTTAACCAGTGCCCCGG+GGG + chr1_1:69698652-69698671 None:intergenic 60.0%
CTTCCTTAACCAGTGCCCCG+GGG + chr1_1:69698653-69698672 None:intergenic 60.0%
GCTTCCTTAACCAGTGCCCC+GGG + chr1_1:69698654-69698673 None:intergenic 60.0%
CCTTAACCAGTGCCTCTCCG+GGG - chr1_1:69698765-69698784 Msa0039750:intron 60.0%
TGTTAACCAGTGCCCCGGAG+AGG + chr1_1:69698780-69698799 None:intergenic 60.0%
!! CTCCGGGGCACTGGTTAACA+AGG - chr1_1:69698780-69698799 Msa0039750:intron 60.0%
GACTTCGACGGTGGCCAAAG+TGG - chr1_1:69699235-69699254 Msa0039750:intron 60.0%
TCGACGGTGGCCAAAGTGGA+CGG - chr1_1:69699239-69699258 Msa0039750:intron 60.0%
TGGTGTGGTGTGGGTCGTAC+TGG - chr1_1:69699328-69699347 Msa0039750:intron 60.0%
!! GGTATCGGTGCAGGATACGC+AGG - chr1_1:69699567-69699586 Msa0039750:intron 60.0%
CAACCGGAAGTCGTCGGAGA+CGG - chr1_1:69702930-69702949 Msa0039750:CDS 60.0%
CGATCTCAGGGCGAAGCGAA+GGG + chr1_1:69703013-69703032 None:intergenic 60.0%
CCTTCGCTTCGCCCTGAGAT+CGG - chr1_1:69703011-69703030 Msa0039750:intron 60.0%
GCTTCTCTGGCAAGACCGTC+GGG + chr1_1:69703038-69703057 None:intergenic 60.0%
GCCAGAGAAGCTGCCGTCAT+CGG - chr1_1:69703047-69703066 Msa0039750:intron 60.0%
! CCGTCATCGGCTACACTGAG+AGG - chr1_1:69703060-69703079 Msa0039750:CDS 60.0%
TTGCCACCCTTACTGGGCAC+TGG - chr1_1:69705244-69705263 Msa0039750:intron 60.0%
TCTTCTGCTCCTGGCTGGAC+TGG - chr1_1:69705736-69705755 Msa0039750:intron 60.0%
GAACACGGACGGAGGACAGA+AGG + chr1_1:69705885-69705904 None:intergenic 60.0%
!! ACGTTAGCGGGAGCACCACC+AGG + chr1_1:69696242-69696261 None:intergenic 65.0%
GGCCATCAGCTGAGGCTGCT+CGG - chr1_1:69697460-69697479 Msa0039750:intron 65.0%
GTCCGAGCAGCCTCAGCTGA+TGG + chr1_1:69697465-69697484 None:intergenic 65.0%
TCAGCTGAGGCTGCTCGGAC+TGG - chr1_1:69697465-69697484 Msa0039750:intron 65.0%
!! CCCCGGAGAGGCACTGGTTA+AGG + chr1_1:69698768-69698787 None:intergenic 65.0%
GTGCCGTCTCCGACGACTTC+CGG + chr1_1:69702936-69702955 None:intergenic 65.0%
! GTCGTCGGAGACGGCACTGA+CGG - chr1_1:69702939-69702958 Msa0039750:CDS 65.0%
! GCACTGACGGTGGTACGCGA+CGG - chr1_1:69702952-69702971 Msa0039750:intron 65.0%
CCGATCTCAGGGCGAAGCGA+AGG + chr1_1:69703014-69703033 None:intergenic 65.0%
GACCGTCGGGTCCGATCTCA+GGG + chr1_1:69703025-69703044 None:intergenic 65.0%
AGACCGTCGGGTCCGATCTC+AGG + chr1_1:69703026-69703045 None:intergenic 65.0%
! GCCGATGACGGCAGCTTCTC+TGG + chr1_1:69703051-69703070 None:intergenic 65.0%
AAGCCAGCACCAGTCCAGCC+AGG + chr1_1:69705748-69705767 None:intergenic 65.0%
!! TGCCCCCGGGGCACTGGTTA+AGG - chr1_1:69698647-69698666 Msa0039750:intron 70.0%
GGTGTCCGGGGTTCGAACCC+CGG + chr1_1:69702458-69702477 None:intergenic 70.0%
!! GTCGGAGACGGCACTGACGG+TGG - chr1_1:69702942-69702961 Msa0039750:CDS 70.0%
CGCCCTGAGATCGGACCCGA+CGG - chr1_1:69703020-69703039 Msa0039750:intron 70.0%
!! GCTCCTGGCTGGACTGGTGC+TGG - chr1_1:69705742-69705761 Msa0039750:intron 70.0%
! AACCAGTGCCCCGGGGGCAC+CGG + chr1_1:69698646-69698665 None:intergenic 75.0%
! CCAGTGCCCCGGAGAGGCAC+TGG + chr1_1:69698774-69698793 None:intergenic 75.0%
CCAGTGCCTCTCCGGGGCAC+TGG - chr1_1:69698771-69698790 Msa0039750:intron 75.0%
AGGGGCCGGGGTTCGAACCC+CGG - chr1_1:69702450-69702469 Msa0039750:intron 75.0%
! AACCGGTGCCCCCGGGGCAC+TGG - chr1_1:69698641-69698660 Msa0039750:intron 80.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 69694897 69706337 69694897 ID=Msa0039750;Name=Msa0039750
chr1_1 mRNA 69694897 69706337 69694897 ID=Msa0039750-mRNA-1;Parent=Msa0039750;Name=Msa0039750-mRNA-1;_AED=0.12;_eAED=0.12;_QI=208|0.84|0.78|1|0.76|0.78|14|1439|324
chr1_1 exon 69694897 69695738 69694897 ID=Msa0039750-mRNA-1:exon:22835;Parent=Msa0039750-mRNA-1
chr1_1 exon 69696078 69696176 69696078 ID=Msa0039750-mRNA-1:exon:22834;Parent=Msa0039750-mRNA-1
chr1_1 exon 69696250 69696327 69696250 ID=Msa0039750-mRNA-1:exon:22833;Parent=Msa0039750-mRNA-1
chr1_1 exon 69697122 69697204 69697122 ID=Msa0039750-mRNA-1:exon:22832;Parent=Msa0039750-mRNA-1
chr1_1 exon 69697306 69697403 69697306 ID=Msa0039750-mRNA-1:exon:22831;Parent=Msa0039750-mRNA-1
chr1_1 exon 69698038 69698069 69698038 ID=Msa0039750-mRNA-1:exon:22830;Parent=Msa0039750-mRNA-1
chr1_1 exon 69698152 69698382 69698152 ID=Msa0039750-mRNA-1:exon:22829;Parent=Msa0039750-mRNA-1
chr1_1 exon 69702866 69702967 69702866 ID=Msa0039750-mRNA-1:exon:22828;Parent=Msa0039750-mRNA-1
chr1_1 exon 69703057 69703173 69703057 ID=Msa0039750-mRNA-1:exon:22827;Parent=Msa0039750-mRNA-1
chr1_1 exon 69703450 69703590 69703450 ID=Msa0039750-mRNA-1:exon:22826;Parent=Msa0039750-mRNA-1
chr1_1 exon 69703710 69703907 69703710 ID=Msa0039750-mRNA-1:exon:22825;Parent=Msa0039750-mRNA-1
chr1_1 exon 69703997 69704209 69703997 ID=Msa0039750-mRNA-1:exon:22824;Parent=Msa0039750-mRNA-1
chr1_1 exon 69704975 69705132 69704975 ID=Msa0039750-mRNA-1:exon:22823;Parent=Msa0039750-mRNA-1
chr1_1 exon 69706108 69706337 69706108 ID=Msa0039750-mRNA-1:exon:22822;Parent=Msa0039750-mRNA-1
chr1_1 five_prime_UTR 69706130 69706337 69706130 ID=Msa0039750-mRNA-1:five_prime_utr;Parent=Msa0039750-mRNA-1
chr1_1 CDS 69706108 69706129 69706108 ID=Msa0039750-mRNA-1:cds;Parent=Msa0039750-mRNA-1
chr1_1 CDS 69704975 69705132 69704975 ID=Msa0039750-mRNA-1:cds;Parent=Msa0039750-mRNA-1
chr1_1 CDS 69703997 69704209 69703997 ID=Msa0039750-mRNA-1:cds;Parent=Msa0039750-mRNA-1
chr1_1 CDS 69703710 69703907 69703710 ID=Msa0039750-mRNA-1:cds;Parent=Msa0039750-mRNA-1
chr1_1 CDS 69703450 69703590 69703450 ID=Msa0039750-mRNA-1:cds;Parent=Msa0039750-mRNA-1
chr1_1 CDS 69703057 69703173 69703057 ID=Msa0039750-mRNA-1:cds;Parent=Msa0039750-mRNA-1
chr1_1 CDS 69702866 69702967 69702866 ID=Msa0039750-mRNA-1:cds;Parent=Msa0039750-mRNA-1
chr1_1 CDS 69698359 69698382 69698359 ID=Msa0039750-mRNA-1:cds;Parent=Msa0039750-mRNA-1
chr1_1 three_prime_UTR 69698152 69698358 69698152 ID=Msa0039750-mRNA-1:three_prime_utr;Parent=Msa0039750-mRNA-1
chr1_1 three_prime_UTR 69698038 69698069 69698038 ID=Msa0039750-mRNA-1:three_prime_utr;Parent=Msa0039750-mRNA-1
chr1_1 three_prime_UTR 69697306 69697403 69697306 ID=Msa0039750-mRNA-1:three_prime_utr;Parent=Msa0039750-mRNA-1
chr1_1 three_prime_UTR 69697122 69697204 69697122 ID=Msa0039750-mRNA-1:three_prime_utr;Parent=Msa0039750-mRNA-1
chr1_1 three_prime_UTR 69696250 69696327 69696250 ID=Msa0039750-mRNA-1:three_prime_utr;Parent=Msa0039750-mRNA-1
chr1_1 three_prime_UTR 69696078 69696176 69696078 ID=Msa0039750-mRNA-1:three_prime_utr;Parent=Msa0039750-mRNA-1
chr1_1 three_prime_UTR 69694897 69695738 69694897 ID=Msa0039750-mRNA-1:three_prime_utr;Parent=Msa0039750-mRNA-1
Gene Sequence

>Msa0039750

ATGGCACAGTTTACCCCCTCAGGTAAATCTGATGATCCCACAAACGGAGAGTACAACGAAACAAGTGGACTGGTTGTTTGTTTTGGTGAGTTGTTAATAGATTTTGTGCCTACAGTGGGTGGAGTGTCTCTAGCCGAAGCACCTGCTTTCAAGAAAGCTCCTGGTGGTGCTCCCGCTAACGTTGGATCAGATGAATTTGGGTATATGTTGGCTGATATTTTAAAGCAAAATAATGTTGATACATCTGGCATGCGGTTTGATTCTGATGCCAGAACCGCATTGGCTTTTGTTACACTTAGAGCTGATGGCGAACGCGAGTTCTTGTTTTTCCGAAATCCTAGTGCTGATATGCTTCTGGATAAGTCAGAGCTTGACCATAACCTCATTGAAAAGGCTAAAATATTCCATTATGGTTCCATCAGTTTGATTGATGAGCCATGCAAGTCAGCTCATCTTGCTGCCTTGAGAATTGCTAAAGACTCTGATTGCATTCTCTCGTATGATCCGAATTTGAGATTGGCACTATGGCCATCAGCTGAGGCTGCTCGGACTGGTATAATGAGCATATGGGATCTAGCCGATGTCATAAAGATCAGTGAAGAGGAGATTACTTTTTTGACTGGTGGTGATGATCCTTATGATGATGATGTTGTATTAAACAAGCTTTTTCACCCTAATCTCAAACTTCTAATTGTTACTGAAGGGTCAGAGGGTTGTAGATATTACACCAAAGATTTTAAGGGCAAAGTTGGAGGTGTCAATGTTAAACCTGTTGACACAACTGGTGCTGGAGATGCATTTGTTAGTGGGATTCTCTACAACATAGCTTCCGACCCAAGTATTTTCGAGAATGAGGAGCATCTCCAGAAAGCGCTATATTTCGCAAATGTATGTGGTGCGATCACCGTGACAGAGAGAGGGGCAATTCCTGCACTACCTACAAAAGATGCTGCACGTGCAAGTTGCAAGCTATAA
Protein sequence

>Msa0039750

MAQFTPSGKSDDPTNGEYNETSGLVVCFGELLIDFVPTVGGVSLAEAPAFKKAPGGAPANVGSDEFGYMLADILKQNNVDTSGMRFDSDARTALAFVTLRADGEREFLFFRNPSADMLLDKSELDHNLIEKAKIFHYGSISLIDEPCKSAHLAALRIAKDSDCILSYDPNLRLALWPSAEAARTGIMSIWDLADVIKISEEEITFLTGGDDPYDDDVVLNKLFHPNLKLLIVTEGSEGCRYYTKDFKGKVGGVNVKPVDTTGAGDAFVSGILYNIASDPSIFENEEHLQKALYFANVCGAITVTERGAIPALPTKDAARASCKL*