AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1387450


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1387450 MtrunA17_Chr1g0187401 97.101 276 8 0 1 276 1 276 0.0 541
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1387450 AT3G23400.1 58.427 267 105 1 10 276 24 284 5.02e-104 304
Msa1387450 AT3G23400.4 77.119 118 27 0 89 206 97 214 1.47e-63 199
Msa1387450 AT3G23400.3 47.436 156 76 1 10 165 24 173 1.09e-34 124
Msa1387450 AT3G23400.2 47.436 156 76 1 10 165 24 173 1.09e-34 124

Find 102 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATAAACAAATATTCCTTTA+AGG 0.088989 tig0020886:+47962 None:intergenic
AACTTTAATTTCAAAGTAAT+TGG 0.172588 tig0020886:+47879 None:intergenic
CCCCTTGAAGTTCAATCTTC+TGG 0.182887 tig0020886:-49962 Msa1387450:intron
TGTAACATATTTAACCTTAA+AGG 0.202545 tig0020886:-47976 Msa1387450:three_prime_UTR
CAGCAGCAGCTTTCACAATA+AGG 0.227641 tig0020886:+50046 None:intergenic
TGTGGAAGAGATTAGATTAA+TGG 0.291979 tig0020886:+50223 None:intergenic
CAGACCTGTCCAAGAGTTAT+AGG 0.304929 tig0020886:+48790 None:intergenic
ATGCTGCAGAGTGCTGTTGC+TGG 0.321754 tig0020886:-49018 Msa1387450:intron
CTTGTTCTTGTTTCTTTCCC+AGG 0.337264 tig0020886:-50122 Msa1387450:CDS
TCAAAAGGATTAGAAGGAAT+TGG 0.350636 tig0020886:+49994 None:intergenic
GGCTTAATATGTTTACCCTT+TGG 0.357584 tig0020886:+50075 None:intergenic
GTAGAATCAAAAGGATTAGA+AGG 0.359007 tig0020886:+49988 None:intergenic
AAGAAGTAGAAAATGGTAGT+AGG 0.359127 tig0020886:+50142 None:intergenic
CAAGAACAAGAAGTAGAAAA+TGG 0.362005 tig0020886:+50135 None:intergenic
AGCAGCAGCTTTCACAATAA+GGG 0.381281 tig0020886:+50047 None:intergenic
GAGAAGTTGAGGGGTGAAGA+AGG 0.382924 tig0020886:+50175 None:intergenic
ATCTTCCTTGCAACTTATCA+AGG 0.390696 tig0020886:+48893 None:intergenic
GATATACCCAACCCACACTA+TGG 0.396755 tig0020886:-48023 Msa1387450:three_prime_UTR
CATTTAATATCAAAGCTGTT+AGG 0.413549 tig0020886:+47816 None:intergenic
TGTTTATAGATAATTACATA+TGG 0.416492 tig0020886:-47947 Msa1387450:three_prime_UTR
CTAATGTGGCAGTTACTTCA+AGG 0.421507 tig0020886:+48490 None:intergenic
AGAAGTAGAAAATGGTAGTA+GGG 0.421680 tig0020886:+50143 None:intergenic
AGCCTTCCTGTGGGAGGTCC+AGG 0.424885 tig0020886:+48817 None:intergenic
AACATTGATGTTGTTGCTCC+TGG 0.427750 tig0020886:+50104 None:intergenic
GGAGCTCCATAGTGTGGGTT+GGG 0.430889 tig0020886:+48017 None:intergenic
CTCAATGCATCTGGAATTTG+AGG 0.437203 tig0020886:+48219 None:intergenic
AAAACCACAGTGAAGACAAC+CGG 0.437328 tig0020886:-48273 Msa1387450:CDS
ACTCTAGGTGGGAGCCGTCC+TGG 0.438721 tig0020886:-48835 Msa1387450:CDS
AGGGGTGAAGAAGGAGATTG+AGG 0.439438 tig0020886:+50184 None:intergenic
TGCTGCAGAGTGCTGTTGCT+GGG 0.444702 tig0020886:-49017 Msa1387450:intron
GATTGTGGCCTCAATGCATC+TGG 0.448068 tig0020886:+48210 None:intergenic
AGGCTCCTTCCTATAACTCT+TGG 0.456747 tig0020886:-48799 Msa1387450:CDS
ACCTTCAGTTGGGTGCTCCA+TGG 0.457796 tig0020886:-48524 Msa1387450:CDS
GAGGAGATAGAGGCGAGCTA+AGG 0.461380 tig0020886:-48128 Msa1387450:CDS
CTCTATCTCCTCTGGTGACG+CGG 0.465853 tig0020886:+48139 None:intergenic
CTCAAATTTGTGAGCTAATG+TGG 0.469198 tig0020886:+48476 None:intergenic
GGGTGAGAGAGAGAAGTTGA+GGG 0.469372 tig0020886:+50165 None:intergenic
ATCAATGTTCTTACTCCAAA+GGG 0.471955 tig0020886:-50090 Msa1387450:CDS
AAAGGCAGATGCTGCGGCTA+AGG 0.475842 tig0020886:-48956 Msa1387450:CDS
GAGATATAACACAAAGTCAT+TGG 0.480126 tig0020886:-47849 Msa1387450:three_prime_UTR
GGGGTGAAGAAGGAGATTGA+GGG 0.481429 tig0020886:+50185 None:intergenic
GAAGCTGATATTTCAATCTC+TGG 0.485146 tig0020886:-50024 Msa1387450:CDS
ATTGGAGACTAAAACTGAAA+AGG 0.488872 tig0020886:+47897 None:intergenic
TTGATAAGTTGCAAGGAAGA+TGG 0.492943 tig0020886:-48891 Msa1387450:CDS
CTCAAATTCCAGATGCATTG+AGG 0.496761 tig0020886:-48218 Msa1387450:CDS
GTTACTTCAAGGGGCGGTAG+AGG 0.502869 tig0020886:+48501 None:intergenic
GCTAAGGAACTTGAAGAAGC+TGG 0.503259 tig0020886:-48940 Msa1387450:CDS
AGGAGATAGAGGCGAGCTAA+GGG 0.505818 tig0020886:-48127 Msa1387450:CDS
GCTTTCACAATAAGGGATGA+AGG 0.507075 tig0020886:+50054 None:intergenic
GCGTTCTCCTCTCGTACTCT+AGG 0.509013 tig0020886:-48850 Msa1387450:CDS
TAATATAGTGGACCTTCAGT+TGG 0.514528 tig0020886:-48535 Msa1387450:CDS
TCAAGGGGCGGTAGAGGCCA+TGG 0.516112 tig0020886:+48507 None:intergenic
GACCAGAAGATTGAACTTCA+AGG 0.517749 tig0020886:+49960 None:intergenic
CCACAATCTAATAGAGGAAG+TGG 0.521959 tig0020886:-48195 Msa1387450:CDS
AGGAGCTCCATAGTGTGGGT+TGG 0.524813 tig0020886:+48016 None:intergenic
CCTTCCTATAACTCTTGGAC+AGG 0.529460 tig0020886:-48794 Msa1387450:intron
TAGCTCGCCTCTATCTCCTC+TGG 0.530340 tig0020886:+48131 None:intergenic
AATATAGTGGACCTTCAGTT+GGG 0.531782 tig0020886:-48534 Msa1387450:CDS
GCCCTAGGAGCTCCATAGTG+TGG 0.534101 tig0020886:+48011 None:intergenic
GGGGTGAGAGAGAGAAGTTG+AGG 0.537948 tig0020886:+50164 None:intergenic
CCCACACTATGGAGCTCCTA+GGG 0.543476 tig0020886:-48012 Msa1387450:three_prime_UTR
CATCAATGTTCTTACTCCAA+AGG 0.543730 tig0020886:-50091 Msa1387450:CDS
ACCAGAAGATTGAACTTCAA+GGG 0.545837 tig0020886:+49961 None:intergenic
TTCTCCTCTCGTACTCTAGG+TGG 0.547834 tig0020886:-48847 Msa1387450:CDS
TTGAGGCCACAATCTAATAG+AGG 0.552114 tig0020886:-48201 Msa1387450:CDS
GAAGTAGAAAATGGTAGTAG+GGG 0.556342 tig0020886:+50144 None:intergenic
CCACTTCCTCTATTAGATTG+TGG 0.557605 tig0020886:+48195 None:intergenic
CCCTAGGAGCTCCATAGTGT+GGG 0.557670 tig0020886:+48012 None:intergenic
AGCCGTCCTGGACCTCCCAC+AGG 0.562196 tig0020886:-48823 Msa1387450:CDS
TCTATCTCCTCTGGTGACGC+GGG 0.563631 tig0020886:+48140 None:intergenic
ACCCACACTATGGAGCTCCT+AGG 0.567793 tig0020886:-48013 Msa1387450:three_prime_UTR
TCTCCTCTCGTACTCTAGGT+GGG 0.571585 tig0020886:-48846 Msa1387450:CDS
CGGCAACTGTGAAAATGTCC+CGG 0.576615 tig0020886:+48254 None:intergenic
GCCATGGAGCACCCAACTGA+AGG 0.577155 tig0020886:+48523 None:intergenic
GACAACCTTGATAAGTTGCA+AGG 0.586490 tig0020886:-48898 Msa1387450:CDS
AAATGAAGAAGACCTACAAA+AGG 0.586772 tig0020886:-48974 Msa1387450:CDS
TAATGTGGCAGTTACTTCAA+GGG 0.589545 tig0020886:+48491 None:intergenic
AAACCACAGTGAAGACAACC+GGG 0.596707 tig0020886:-48272 Msa1387450:CDS
GCTCACAAATTTGAGCTCGT+AGG 0.603423 tig0020886:-48468 Msa1387450:intron
CGCGTCACCAGAGGAGATAG+AGG 0.604555 tig0020886:-48138 Msa1387450:CDS
GCTGTTGCTGGGCTAAATAG+AGG 0.605133 tig0020886:-49006 Msa1387450:CDS
CCTGTCCAAGAGTTATAGGA+AGG 0.608009 tig0020886:+48794 None:intergenic
ACATTGATGTTGTTGCTCCT+GGG 0.612390 tig0020886:+50105 None:intergenic
TATAGGAAGGAGCCTTCCTG+TGG 0.615801 tig0020886:+48807 None:intergenic
GTCCTGGACCTCCCACAGGA+AGG 0.617086 tig0020886:-48819 Msa1387450:CDS
CCAGAAGATTGAACTTCAAG+GGG 0.618887 tig0020886:+49962 None:intergenic
CCTACAAAAGGCAGATGCTG+CGG 0.625367 tig0020886:-48962 Msa1387450:CDS
ACTTATCAAGGTTGTCTGTG+AGG 0.627193 tig0020886:+48905 None:intergenic
TTCCTGTGGGAGGTCCAGGA+CGG 0.631302 tig0020886:+48821 None:intergenic
AAGTAGAAAATGGTAGTAGG+GGG 0.633244 tig0020886:+50145 None:intergenic
GGTGAGAGAGAGAAGTTGAG+GGG 0.635373 tig0020886:+50166 None:intergenic
AATGTGGCAGTTACTTCAAG+GGG 0.642001 tig0020886:+48492 None:intergenic
GGAATTTGAGGCAAATCTAG+AGG 0.645956 tig0020886:+48231 None:intergenic
GGAAGGAGCCTTCCTGTGGG+AGG 0.648424 tig0020886:+48811 None:intergenic
GCAGATACCCGCGTCACCAG+AGG 0.664329 tig0020886:-48147 Msa1387450:CDS
GCTCCCACCTAGAGTACGAG+AGG 0.667203 tig0020886:+48843 None:intergenic
GTGGCAGTTACTTCAAGGGG+CGG 0.672835 tig0020886:+48495 None:intergenic
ATAGGAAGGAGCCTTCCTGT+GGG 0.683855 tig0020886:+48808 None:intergenic
ATTTGAGGCAAATCTAGAGG+CGG 0.686437 tig0020886:+48234 None:intergenic
AAGGAACTTGAAGAAGCTGG+AGG 0.698611 tig0020886:-48937 Msa1387450:CDS
TGTCCCGGTTGTCTTCACTG+TGG 0.714687 tig0020886:+48269 None:intergenic
CAGAAGATTGAACTTCAAGG+GGG 0.762152 tig0020886:+49963 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAATTGCATAATAAAAAT+AGG - tig0020886:48330-48349 Msa1387450:intron 10.0%
!! ATAATTGCATAATAAAAATA+GGG - tig0020886:48331-48350 Msa1387450:intron 10.0%
!! AAAATATATAGATATAGTAT+AGG - tig0020886:48387-48406 Msa1387450:intron 10.0%
!! TATAAGTATTTATCATATAA+GGG - tig0020886:48773-48792 Msa1387450:intron 10.0%
!! TAATTGCATAATAAAAATAG+GGG - tig0020886:48332-48351 Msa1387450:intron 15.0%
!!! TATATATTTTTGTTTTGCAA+AGG + tig0020886:48377-48396 None:intergenic 15.0%
!!! ACTTAAGTATATAAGTTTTA+TGG - tig0020886:48434-48453 Msa1387450:intron 15.0%
!! ATTGTCATTAAAATGTATTT+AGG - tig0020886:48475-48494 Msa1387450:CDS 15.0%
!! GTATAAGTATTTATCATATA+AGG - tig0020886:48772-48791 Msa1387450:intron 15.0%
!! AAATATTACATCATTATATC+AGG + tig0020886:49374-49393 None:intergenic 15.0%
!!! ACATTTGATAAACATATTTT+TGG + tig0020886:49507-49526 None:intergenic 15.0%
!!! TTTTTATGATAGTATTGTAT+TGG - tig0020886:50051-50070 Msa1387450:CDS 15.0%
!! TATAAACAAATATTCCTTTA+AGG + tig0020886:50169-50188 None:intergenic 15.0%
!! TGTTTATAGATAATTACATA+TGG - tig0020886:50181-50200 Msa1387450:CDS 15.0%
!!! AACTTTAATTTCAAAGTAAT+TGG + tig0020886:50252-50271 None:intergenic 15.0%
!!! CTTTTGTTTGACAAATTAAA+TGG - tig0020886:48251-48270 Msa1387450:CDS 20.0%
!! TGGATAAATAACTTGATTTA+GGG - tig0020886:48505-48524 Msa1387450:CDS 20.0%
!! GATTATGTATAAGTTGTAAA+CGG - tig0020886:48795-48814 Msa1387450:CDS 20.0%
!!! AATAAGTTGAAAACAACTTA+TGG - tig0020886:48866-48885 Msa1387450:CDS 20.0%
!!! ATTATGTTTTAGTCTCATTT+CGG - tig0020886:49459-49478 Msa1387450:intron 20.0%
!!! CAAAGATTTTGATAATATAG+TGG - tig0020886:49581-49600 Msa1387450:intron 20.0%
!! TGTAACATATTTAACCTTAA+AGG - tig0020886:50152-50171 Msa1387450:CDS 20.0%
! AAAATAGGGGAAATAGTTAT+AGG - tig0020886:48345-48364 Msa1387450:intron 25.0%
! AATCAAGTTATTTATCCAGA+GGG + tig0020886:48503-48522 None:intergenic 25.0%
! AAATCAAGTTATTTATCCAG+AGG + tig0020886:48504-48523 None:intergenic 25.0%
! CTGGATAAATAACTTGATTT+AGG - tig0020886:48504-48523 Msa1387450:CDS 25.0%
! TAGATTATACGAAAACAGTT+TGG - tig0020886:48650-48669 Msa1387450:intron 25.0%
!!! ACTGTTTTGTTTTTGCTATT+AGG - tig0020886:49533-49552 Msa1387450:intron 25.0%
! CATTTAATATCAAAGCTGTT+AGG + tig0020886:50315-50334 None:intergenic 25.0%
TGTGGAAGAGATTAGATTAA+TGG + tig0020886:47908-47927 None:intergenic 30.0%
AGAAGTAGAAAATGGTAGTA+GGG + tig0020886:47988-48007 None:intergenic 30.0%
AAGAAGTAGAAAATGGTAGT+AGG + tig0020886:47989-48008 None:intergenic 30.0%
CAAGAACAAGAAGTAGAAAA+TGG + tig0020886:47996-48015 None:intergenic 30.0%
ATCAATGTTCTTACTCCAAA+GGG - tig0020886:48038-48057 Msa1387450:three_prime_UTR 30.0%
TCAAAAGGATTAGAAGGAAT+TGG + tig0020886:48137-48156 None:intergenic 30.0%
GTAGAATCAAAAGGATTAGA+AGG + tig0020886:48143-48162 None:intergenic 30.0%
! TTAGCTTAGCTTCTTTTCTT+TGG - tig0020886:48211-48230 Msa1387450:CDS 30.0%
ATCAAGTTATTTATCCAGAG+GGG + tig0020886:48502-48521 None:intergenic 30.0%
! AACTTGATTTAGGGTTTGTT+TGG - tig0020886:48514-48533 Msa1387450:CDS 30.0%
! TTTAGGGTTTGTTTGGAATT+TGG - tig0020886:48521-48540 Msa1387450:CDS 30.0%
! TAATCACTTGCTACACTATT+TGG - tig0020886:48573-48592 Msa1387450:CDS 30.0%
! AATCACTTGCTACACTATTT+GGG - tig0020886:48574-48593 Msa1387450:CDS 30.0%
CAAGGATAACTTATGAAAAC+AGG - tig0020886:48624-48643 Msa1387450:intron 30.0%
TTACTGTATCAGAGAGTTTA+TGG + tig0020886:48910-48929 None:intergenic 30.0%
!!! TGACACATTGATTTGGATTT+TGG - tig0020886:48997-49016 Msa1387450:CDS 30.0%
!!! CATTGATTTGGATTTTGGAA+TGG - tig0020886:49002-49021 Msa1387450:CDS 30.0%
AAATGAAGAAGACCTACAAA+AGG - tig0020886:49154-49173 Msa1387450:intron 30.0%
TTGTTCATAACTATCTTTCC+TGG - tig0020886:49401-49420 Msa1387450:intron 30.0%
ATTGGAGACTAAAACTGAAA+AGG + tig0020886:50234-50253 None:intergenic 30.0%
GAGATATAACACAAAGTCAT+TGG - tig0020886:50279-50298 Msa1387450:five_prime_UTR 30.0%
!!! TCTCTTCCACACTTTTTTCA+TGG - tig0020886:47917-47936 Msa1387450:three_prime_UTR 35.0%
AAGTAGAAAATGGTAGTAGG+GGG + tig0020886:47986-48005 None:intergenic 35.0%
GAAGTAGAAAATGGTAGTAG+GGG + tig0020886:47987-48006 None:intergenic 35.0%
CATCAATGTTCTTACTCCAA+AGG - tig0020886:48037-48056 Msa1387450:three_prime_UTR 35.0%
GGCTTAATATGTTTACCCTT+TGG + tig0020886:48056-48075 None:intergenic 35.0%
GAAGCTGATATTTCAATCTC+TGG - tig0020886:48104-48123 Msa1387450:exon 35.0%
ACCAGAAGATTGAACTTCAA+GGG + tig0020886:48170-48189 None:intergenic 35.0%
ACTAATCATGCACTCAACAT+GGG + tig0020886:48307-48326 None:intergenic 35.0%
AACTAATCATGCACTCAACA+TGG + tig0020886:48308-48327 None:intergenic 35.0%
TCAAGTTATTTATCCAGAGG+GGG + tig0020886:48501-48520 None:intergenic 35.0%
ACTTGTTTGAGCTTATCTAC+TGG - tig0020886:48548-48567 Msa1387450:CDS 35.0%
GACATGTTCATAAGCTTTCA+AGG - tig0020886:48606-48625 Msa1387450:intron 35.0%
ATAAGTTGTAAACGGTCTCA+CGG - tig0020886:48803-48822 Msa1387450:CDS 35.0%
CAACTTATGGACATGACATA+AGG - tig0020886:48879-48898 Msa1387450:CDS 35.0%
AACCCTTACACAACTACATA+AGG - tig0020886:48961-48980 Msa1387450:CDS 35.0%
TGCCTTATGTAGTTGTGTAA+GGG + tig0020886:48966-48985 None:intergenic 35.0%
TTGCCTTATGTAGTTGTGTA+AGG + tig0020886:48967-48986 None:intergenic 35.0%
!!! TGATTTGGATTTTGGAATGG+TGG - tig0020886:49005-49024 Msa1387450:CDS 35.0%
ATCTTCCTTGCAACTTATCA+AGG + tig0020886:49238-49257 None:intergenic 35.0%
TTGATAAGTTGCAAGGAAGA+TGG - tig0020886:49237-49256 Msa1387450:intron 35.0%
!! TAATATAGTGGACCTTCAGT+TGG - tig0020886:49593-49612 Msa1387450:intron 35.0%
!! AATATAGTGGACCTTCAGTT+GGG - tig0020886:49594-49613 Msa1387450:intron 35.0%
TAATGTGGCAGTTACTTCAA+GGG + tig0020886:49640-49659 None:intergenic 35.0%
CTCAAATTTGTGAGCTAATG+TGG + tig0020886:49655-49674 None:intergenic 35.0%
TGCTTTCTACTGCATATACA+TGG - tig0020886:49692-49711 Msa1387450:intron 35.0%
ACACTTAAACAAAAAGCCCT+AGG + tig0020886:50135-50154 None:intergenic 35.0%
! CTTGTTCTTGTTTCTTTCCC+AGG - tig0020886:48006-48025 Msa1387450:three_prime_UTR 40.0%
ACATTGATGTTGTTGCTCCT+GGG + tig0020886:48026-48045 None:intergenic 40.0%
AACATTGATGTTGTTGCTCC+TGG + tig0020886:48027-48046 None:intergenic 40.0%
GCTTTCACAATAAGGGATGA+AGG + tig0020886:48077-48096 None:intergenic 40.0%
AGCAGCAGCTTTCACAATAA+GGG + tig0020886:48084-48103 None:intergenic 40.0%
AAGGGGGAAGTAGAATCAAA+AGG + tig0020886:48152-48171 None:intergenic 40.0%
CAGAAGATTGAACTTCAAGG+GGG + tig0020886:48168-48187 None:intergenic 40.0%
CCAGAAGATTGAACTTCAAG+GGG + tig0020886:48169-48188 None:intergenic 40.0%
GACCAGAAGATTGAACTTCA+AGG + tig0020886:48171-48190 None:intergenic 40.0%
TAAGCCCGTTTATCTGAACA+AGG - tig0020886:48737-48756 Msa1387450:intron 40.0%
! CTTGCCTTGTTCAGATAAAC+GGG + tig0020886:48744-48763 None:intergenic 40.0%
! GCTTGCCTTGTTCAGATAAA+CGG + tig0020886:48745-48764 None:intergenic 40.0%
! GCTGCTTTCATAAGCTATCT+CGG - tig0020886:48831-48850 Msa1387450:CDS 40.0%
! TAGTTGTGTAAGGGTTTGCT+TGG + tig0020886:48957-48976 None:intergenic 40.0%
CCAAATCAATGTGTCACATC+TGG + tig0020886:48993-49012 None:intergenic 40.0%
! CCAGATGTGACACATTGATT+TGG - tig0020886:48990-49009 Msa1387450:CDS 40.0%
ACTTATCAAGGTTGTCTGTG+AGG + tig0020886:49226-49245 None:intergenic 40.0%
GACAACCTTGATAAGTTGCA+AGG - tig0020886:49230-49249 Msa1387450:intron 40.0%
AATGTGGCAGTTACTTCAAG+GGG + tig0020886:49639-49658 None:intergenic 40.0%
CTAATGTGGCAGTTACTTCA+AGG + tig0020886:49641-49660 None:intergenic 40.0%
ACAAACCACTCACAGTAAAG+AGG + tig0020886:49796-49815 None:intergenic 40.0%
! TGAGTGGTTTGTGATGATTC+AGG - tig0020886:49804-49823 Msa1387450:intron 40.0%
AAAACCACAGTGAAGACAAC+CGG - tig0020886:49855-49874 Msa1387450:intron 40.0%
! ATTTGAGGCAAATCTAGAGG+CGG + tig0020886:49897-49916 None:intergenic 40.0%
! GGAATTTGAGGCAAATCTAG+AGG + tig0020886:49900-49919 None:intergenic 40.0%
! CTCAATGCATCTGGAATTTG+AGG + tig0020886:49912-49931 None:intergenic 40.0%
CTCAAATTCCAGATGCATTG+AGG - tig0020886:49910-49929 Msa1387450:intron 40.0%
TTGAGGCCACAATCTAATAG+AGG - tig0020886:49927-49946 Msa1387450:intron 40.0%
CCACTTCCTCTATTAGATTG+TGG + tig0020886:49936-49955 None:intergenic 40.0%
CCACAATCTAATAGAGGAAG+TGG - tig0020886:49933-49952 Msa1387450:intron 40.0%
GGGAAGCCATGAAAAAAGTG+TGG + tig0020886:47926-47945 None:intergenic 45.0%
CAGCAGCAGCTTTCACAATA+AGG + tig0020886:48085-48104 None:intergenic 45.0%
CCCCTTGAAGTTCAATCTTC+TGG - tig0020886:48166-48185 Msa1387450:CDS 45.0%
AAATGTATTTAGGCCCCCTC+TGG - tig0020886:48485-48504 Msa1387450:CDS 45.0%
GCTAAGGAACTTGAAGAAGC+TGG - tig0020886:49188-49207 Msa1387450:intron 45.0%
AAGGAACTTGAAGAAGCTGG+AGG - tig0020886:49191-49210 Msa1387450:intron 45.0%
AGGCTCCTTCCTATAACTCT+TGG - tig0020886:49329-49348 Msa1387450:intron 45.0%
CCTGTCCAAGAGTTATAGGA+AGG + tig0020886:49337-49356 None:intergenic 45.0%
CCTTCCTATAACTCTTGGAC+AGG - tig0020886:49334-49353 Msa1387450:intron 45.0%
CAGACCTGTCCAAGAGTTAT+AGG + tig0020886:49341-49360 None:intergenic 45.0%
GGAGATCAAAGCACACACAT+AGG + tig0020886:49486-49505 None:intergenic 45.0%
GCTCACAAATTTGAGCTCGT+AGG - tig0020886:49660-49679 Msa1387450:intron 45.0%
AACCACTCACAGTAAAGAGG+CGG + tig0020886:49793-49812 None:intergenic 45.0%
AAACCACAGTGAAGACAACC+GGG - tig0020886:49856-49875 Msa1387450:intron 45.0%
GATATACCCAACCCACACTA+TGG - tig0020886:50105-50124 Msa1387450:CDS 45.0%
GGGGTGAAGAAGGAGATTGA+GGG + tig0020886:47946-47965 None:intergenic 50.0%
AGGGGTGAAGAAGGAGATTG+AGG + tig0020886:47947-47966 None:intergenic 50.0%
GAGAAGTTGAGGGGTGAAGA+AGG + tig0020886:47956-47975 None:intergenic 50.0%
GGTGAGAGAGAGAAGTTGAG+GGG + tig0020886:47965-47984 None:intergenic 50.0%
GGGTGAGAGAGAGAAGTTGA+GGG + tig0020886:47966-47985 None:intergenic 50.0%
GCTGTTGCTGGGCTAAATAG+AGG - tig0020886:49122-49141 Msa1387450:intron 50.0%
CCTACAAAAGGCAGATGCTG+CGG - tig0020886:49166-49185 Msa1387450:intron 50.0%
TTCTCCTCTCGTACTCTAGG+TGG - tig0020886:49281-49300 Msa1387450:intron 50.0%
TCTCCTCTCGTACTCTAGGT+GGG - tig0020886:49282-49301 Msa1387450:intron 50.0%
ATAGGAAGGAGCCTTCCTGT+GGG + tig0020886:49323-49342 None:intergenic 50.0%
TATAGGAAGGAGCCTTCCTG+TGG + tig0020886:49324-49343 None:intergenic 50.0%
GTTGCTCAGTTGCAACTTCC+AGG + tig0020886:49422-49441 None:intergenic 50.0%
CGGCAACTGTGAAAATGTCC+CGG + tig0020886:49877-49896 None:intergenic 50.0%
GATTGTGGCCTCAATGCATC+TGG + tig0020886:49921-49940 None:intergenic 50.0%
AGGAGATAGAGGCGAGCTAA+GGG - tig0020886:50001-50020 Msa1387450:CDS 50.0%
GGGGTGAGAGAGAGAAGTTG+AGG + tig0020886:47967-47986 None:intergenic 55.0%
!! ATGCTGCAGAGTGCTGTTGC+TGG - tig0020886:49110-49129 Msa1387450:intron 55.0%
!! TGCTGCAGAGTGCTGTTGCT+GGG - tig0020886:49111-49130 Msa1387450:intron 55.0%
! CCGCAGCATCTGCCTTTTGT+AGG + tig0020886:49169-49188 None:intergenic 55.0%
AAAGGCAGATGCTGCGGCTA+AGG - tig0020886:49172-49191 Msa1387450:intron 55.0%
GCGTTCTCCTCTCGTACTCT+AGG - tig0020886:49278-49297 Msa1387450:intron 55.0%
ACCTTCAGTTGGGTGCTCCA+TGG - tig0020886:49604-49623 Msa1387450:intron 55.0%
GTTACTTCAAGGGGCGGTAG+AGG + tig0020886:49630-49649 None:intergenic 55.0%
GTGGCAGTTACTTCAAGGGG+CGG + tig0020886:49636-49655 None:intergenic 55.0%
GACCGCCTCTTTACTGTGAG+TGG - tig0020886:49788-49807 Msa1387450:intron 55.0%
TGTCCCGGTTGTCTTCACTG+TGG + tig0020886:49862-49881 None:intergenic 55.0%
! TCTATCTCCTCTGGTGACGC+GGG + tig0020886:49991-50010 None:intergenic 55.0%
! CTCTATCTCCTCTGGTGACG+CGG + tig0020886:49992-50011 None:intergenic 55.0%
TAGCTCGCCTCTATCTCCTC+TGG + tig0020886:50000-50019 None:intergenic 55.0%
GAGGAGATAGAGGCGAGCTA+AGG - tig0020886:50000-50019 Msa1387450:CDS 55.0%
GGAGCTCCATAGTGTGGGTT+GGG + tig0020886:50114-50133 None:intergenic 55.0%
AGGAGCTCCATAGTGTGGGT+TGG + tig0020886:50115-50134 None:intergenic 55.0%
ACCCACACTATGGAGCTCCT+AGG - tig0020886:50115-50134 Msa1387450:CDS 55.0%
CCCTAGGAGCTCCATAGTGT+GGG + tig0020886:50119-50138 None:intergenic 55.0%
CCCACACTATGGAGCTCCTA+GGG - tig0020886:50116-50135 Msa1387450:CDS 55.0%
GCTCCCACCTAGAGTACGAG+AGG + tig0020886:49288-49307 None:intergenic 60.0%
TTCCTGTGGGAGGTCCAGGA+CGG + tig0020886:49310-49329 None:intergenic 60.0%
! GCCATGGAGCACCCAACTGA+AGG + tig0020886:49608-49627 None:intergenic 60.0%
CGCGTCACCAGAGGAGATAG+AGG - tig0020886:49990-50009 Msa1387450:CDS 60.0%
GCCCTAGGAGCTCCATAGTG+TGG + tig0020886:50120-50139 None:intergenic 60.0%
ACTCTAGGTGGGAGCCGTCC+TGG - tig0020886:49293-49312 Msa1387450:intron 65.0%
GTCCTGGACCTCCCACAGGA+AGG - tig0020886:49309-49328 Msa1387450:intron 65.0%
AGCCTTCCTGTGGGAGGTCC+AGG + tig0020886:49314-49333 None:intergenic 65.0%
GGAAGGAGCCTTCCTGTGGG+AGG + tig0020886:49320-49339 None:intergenic 65.0%
TCAAGGGGCGGTAGAGGCCA+TGG + tig0020886:49624-49643 None:intergenic 65.0%
GCAGATACCCGCGTCACCAG+AGG - tig0020886:49981-50000 Msa1387450:CDS 65.0%
AGCCGTCCTGGACCTCCCAC+AGG - tig0020886:49305-49324 Msa1387450:intron 70.0%
Chromosome Type Strat End Strand Name
tig0020886 gene 47793 50357 47793 ID=Msa1387450;Name=Msa1387450
tig0020886 mRNA 47793 50357 47793 ID=Msa1387450-mRNA-1;Parent=Msa1387450;Name=Msa1387450-mRNA-1;_AED=0.06;_eAED=0.06;_QI=143|1|1|1|1|1|4|317|276
tig0020886 exon 47793 48324 47793 ID=Msa1387450-mRNA-1:exon:10594;Parent=Msa1387450-mRNA-1
tig0020886 exon 48469 48595 48469 ID=Msa1387450-mRNA-1:exon:10593;Parent=Msa1387450-mRNA-1
tig0020886 exon 48795 49031 48795 ID=Msa1387450-mRNA-1:exon:10592;Parent=Msa1387450-mRNA-1
tig0020886 exon 49963 50357 49963 ID=Msa1387450-mRNA-1:exon:10591;Parent=Msa1387450-mRNA-1
tig0020886 five_prime_UTR 50215 50357 50215 ID=Msa1387450-mRNA-1:five_prime_utr;Parent=Msa1387450-mRNA-1
tig0020886 CDS 49963 50214 49963 ID=Msa1387450-mRNA-1:cds;Parent=Msa1387450-mRNA-1
tig0020886 CDS 48795 49031 48795 ID=Msa1387450-mRNA-1:cds;Parent=Msa1387450-mRNA-1
tig0020886 CDS 48469 48595 48469 ID=Msa1387450-mRNA-1:cds;Parent=Msa1387450-mRNA-1
tig0020886 CDS 48110 48324 48110 ID=Msa1387450-mRNA-1:cds;Parent=Msa1387450-mRNA-1
tig0020886 three_prime_UTR 47793 48109 47793 ID=Msa1387450-mRNA-1:three_prime_utr;Parent=Msa1387450-mRNA-1
Gene Sequence

>Msa1387450

ATGGCTTCCCTCAATCTCCTTCTTCACCCCTCAACTTCTCTCTCTCACCCCCTACTACCATTTTCTACTTCTTGTTCTTGTTTCTTTCCCAGGAGCAACAACATCAATGTTCTTACTCCAAAGGGTAAACATATTAAGCCTTCATCCCTTATTGTGAAAGCTGCTGCTGAAGCTGATATTTCAATCTCTGGCTCTATTCCAATTCCTTCTAATCCTTTTGATTCTACTTCCCCCTTGAAGTTCAATCTTCTGAGTGCTGTTGCTGGGCTAAATAGAGGTCTTGCTGCAAATGAAGAAGACCTACAAAAGGCAGATGCTGCGGCTAAGGAACTTGAAGAAGCTGGAGGATTAGTAGACCTCACAGACAACCTTGATAAGTTGCAAGGAAGATGGAAACTGATATATAGCAGCGCGTTCTCCTCTCGTACTCTAGGTGGGAGCCGTCCTGGACCTCCCACAGGAAGGCTCCTTCCTATAACTCTTGGACAGGTTTTTCAACGAATTGACATCTTAAGCAAAGATTTTGATAATATAGTGGACCTTCAGTTGGGTGCTCCATGGCCTCTACCGCCCCTTGAAGTAACTGCCACATTAGCTCACAAATTTGAGCTCGTAGGATCTTCGAAGATCAAGATAATATTTGAGAAAACCACAGTGAAGACAACCGGGACATTTTCACAGTTGCCGCCTCTAGATTTGCCTCAAATTCCAGATGCATTGAGGCCACAATCTAATAGAGGAAGTGGTGATTTTGAAGTTACATATCTTGACGCAGATACCCGCGTCACCAGAGGAGATAGAGGCGAGCTAAGGGTCTTTGTGATTGCATAA

Protein sequence

>Msa1387450

MASLNLLLHPSTSLSHPLLPFSTSCSCFFPRSNNINVLTPKGKHIKPSSLIVKAAAEADISISGSIPIPSNPFDSTSPLKFNLLSAVAGLNRGLAANEEDLQKADAAAKELEEAGGLVDLTDNLDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQVFQRIDILSKDFDNIVDLQLGAPWPLPPLEVTATLAHKFELVGSSKIKIIFEKTTVKTTGTFSQLPPLDLPQIPDALRPQSNRGSGDFEVTYLDADTRVTRGDRGELRVFVIA*