AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0077570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0077570 MtrunA17_Chr1g0187401 96.739 276 9 0 1 276 1 276 0.0 538
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0077570 AT3G23400.1 73.936 188 49 0 89 276 97 284 2.12e-103 303
Msa0077570 AT3G23400.4 76.271 118 28 0 89 206 97 214 9.12e-63 197
Msa0077570 AT3G23400.3 74.026 77 20 0 89 165 97 173 9.29e-34 122
Msa0077570 AT3G23400.2 74.026 77 20 0 89 165 97 173 9.29e-34 122

Find 91 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATAAACAAATATTCCTTTA+AGG 0.088989 1_2:+54535314 None:intergenic
CCCCTTGAAGTTCAATCTTC+TGG 0.182887 1_2:-54537370 Msa0077570:intron
TGTAACATATTTAACCTTAA+AGG 0.202545 1_2:-54535328 Msa0077570:three_prime_UTR
CAGCAGCAGCTTTCACAATA+AGG 0.246529 1_2:+54537454 None:intergenic
TGTGGAAGAGATTAGATTAA+TGG 0.291979 1_2:+54537631 None:intergenic
GAATTGATGCTGTTGCTTCT+AGG 0.300366 1_2:+54537513 None:intergenic
CAGACCTGTCCAAGAGTTAT+AGG 0.304929 1_2:+54536142 None:intergenic
TCAAAAGGATTAGAAGGAAT+TGG 0.350636 1_2:+54537402 None:intergenic
GTAGAATCAAAAGGATTAGA+AGG 0.359007 1_2:+54537396 None:intergenic
CAAGAACAAGAAGTAGAAAA+TGG 0.362005 1_2:+54537543 None:intergenic
GGCTTGATATGTTTGCCCTT+TGG 0.366911 1_2:+54537483 None:intergenic
GAGAAGTTGAGGGGTGAAGA+AGG 0.382924 1_2:+54537583 None:intergenic
ATCTTCCTTGCAACTTATCA+AGG 0.390696 1_2:+54536245 None:intergenic
GATATACCCAACCCACACTA+TGG 0.396755 1_2:-54535375 Msa0077570:three_prime_UTR
AGCAGCAGCTTTCACAATAA+GGG 0.399888 1_2:+54537455 None:intergenic
CTAATGTGGCAGTTACTTCA+AGG 0.421507 1_2:+54535842 None:intergenic
AGCCTTCCTGTGGGAGGTCC+AGG 0.424885 1_2:+54536169 None:intergenic
GGAGCTCCATAGTGTGGGTT+GGG 0.430889 1_2:+54535369 None:intergenic
CTCAATGCATCTGGAATTTG+AGG 0.437203 1_2:+54535571 None:intergenic
AAAACCACAGTGAAGACAAC+CGG 0.437328 1_2:-54535625 Msa0077570:CDS
ACTCTAGGTGGGAGCCGTCC+TGG 0.438721 1_2:-54536187 Msa0077570:CDS
AGGGGTGAAGAAGGAGATTG+AGG 0.439438 1_2:+54537592 None:intergenic
GGGTGAGAGAGAGAAGTTGA+GGG 0.443577 1_2:+54537573 None:intergenic
GATTGTGGCCTCAATGCATC+TGG 0.448068 1_2:+54535562 None:intergenic
AGGCTCCTTCCTATAACTCT+TGG 0.456747 1_2:-54536151 Msa0077570:CDS
ACCTTCAGTTGGGTGCTCCA+TGG 0.457796 1_2:-54535876 Msa0077570:CDS
GAGGAGATAGAGGCGAGCTA+AGG 0.461380 1_2:-54535480 Msa0077570:CDS
GAAGTAGAAAATGGTAGTAG+AGG 0.461858 1_2:+54537552 None:intergenic
CTCTATCTCCTCTGGTGACG+CGG 0.465853 1_2:+54535491 None:intergenic
CTCAAATTTGTGAGCTAATG+TGG 0.469198 1_2:+54535828 None:intergenic
AAAGGCAGATGCTGCGGCTA+AGG 0.475842 1_2:-54536308 Msa0077570:CDS
ATCAATTCTCTTACTCCAAA+GGG 0.477958 1_2:-54537498 Msa0077570:CDS
GGGGTGAAGAAGGAGATTGA+GGG 0.481429 1_2:+54537593 None:intergenic
GAAGCTGATATTTCAATCTC+TGG 0.485146 1_2:-54537432 Msa0077570:CDS
TTGATAAGTTGCAAGGAAGA+TGG 0.492943 1_2:-54536243 Msa0077570:CDS
CTCAAATTCCAGATGCATTG+AGG 0.496761 1_2:-54535570 Msa0077570:CDS
GTTACTTCAAGGGGCGGTAG+AGG 0.502869 1_2:+54535853 None:intergenic
GCTAAGGAACTTGAAGAAGC+TGG 0.503259 1_2:-54536292 Msa0077570:CDS
AGGAGATAGAGGCGAGCTAA+GGG 0.505818 1_2:-54535479 Msa0077570:CDS
GCGTTCTCCTCTCGTACTCT+AGG 0.509013 1_2:-54536202 Msa0077570:CDS
TAATATAGTGGACCTTCAGT+TGG 0.514528 1_2:-54535887 Msa0077570:CDS
TCAAGGGGCGGTAGAGGCCA+TGG 0.516112 1_2:+54535859 None:intergenic
GACCAGAAGATTGAACTTCA+AGG 0.517749 1_2:+54537368 None:intergenic
AGGGTGAGAGAGAGAAGTTG+AGG 0.520649 1_2:+54537572 None:intergenic
CCACAATCTAATAGAGGAAG+TGG 0.521959 1_2:-54535547 Msa0077570:CDS
AGGAGCTCCATAGTGTGGGT+TGG 0.524813 1_2:+54535368 None:intergenic
CCTTCCTATAACTCTTGGAC+AGG 0.529460 1_2:-54536146 Msa0077570:intron
TAGCTCGCCTCTATCTCCTC+TGG 0.530340 1_2:+54535483 None:intergenic
AATATAGTGGACCTTCAGTT+GGG 0.531782 1_2:-54535886 Msa0077570:CDS
GCCCTAGGAGCTCCATAGTG+TGG 0.534101 1_2:+54535363 None:intergenic
CCCACACTATGGAGCTCCTA+GGG 0.543476 1_2:-54535364 Msa0077570:three_prime_UTR
ACCAGAAGATTGAACTTCAA+GGG 0.545837 1_2:+54537369 None:intergenic
TTCTCCTCTCGTACTCTAGG+TGG 0.547834 1_2:-54536199 Msa0077570:CDS
AAGTAGAAAATGGTAGTAGA+GGG 0.550199 1_2:+54537553 None:intergenic
TTGAGGCCACAATCTAATAG+AGG 0.552114 1_2:-54535553 Msa0077570:CDS
CCACTTCCTCTATTAGATTG+TGG 0.557605 1_2:+54535547 None:intergenic
CCCTAGGAGCTCCATAGTGT+GGG 0.557670 1_2:+54535364 None:intergenic
CATCAATTCTCTTACTCCAA+AGG 0.560144 1_2:-54537499 Msa0077570:CDS
AGCCGTCCTGGACCTCCCAC+AGG 0.562196 1_2:-54536175 Msa0077570:CDS
TCTATCTCCTCTGGTGACGC+GGG 0.563631 1_2:+54535492 None:intergenic
ACCCACACTATGGAGCTCCT+AGG 0.567793 1_2:-54535365 Msa0077570:three_prime_UTR
TCTCCTCTCGTACTCTAGGT+GGG 0.571585 1_2:-54536198 Msa0077570:CDS
CGGCAACTGTGAAAATGTCC+CGG 0.576615 1_2:+54535606 None:intergenic
GCCATGGAGCACCCAACTGA+AGG 0.577155 1_2:+54535875 None:intergenic
GACAACCTTGATAAGTTGCA+AGG 0.586490 1_2:-54536250 Msa0077570:CDS
AAATGAAGAAGACCTACAAA+AGG 0.586772 1_2:-54536326 Msa0077570:CDS
TAATGTGGCAGTTACTTCAA+GGG 0.589545 1_2:+54535843 None:intergenic
AAACCACAGTGAAGACAACC+GGG 0.596707 1_2:-54535624 Msa0077570:CDS
GCTGTTGCTGCGCTAAATAG+AGG 0.601620 1_2:-54536358 Msa0077570:CDS
GCTCACAAATTTGAGCTCGT+AGG 0.603423 1_2:-54535820 Msa0077570:intron
CGCGTCACCAGAGGAGATAG+AGG 0.604555 1_2:-54535490 Msa0077570:CDS
CCTGTCCAAGAGTTATAGGA+AGG 0.608009 1_2:+54536146 None:intergenic
GGTGAGAGAGAGAAGTTGAG+GGG 0.614161 1_2:+54537574 None:intergenic
TATAGGAAGGAGCCTTCCTG+TGG 0.615801 1_2:+54536159 None:intergenic
GTCCTGGACCTCCCACAGGA+AGG 0.617086 1_2:-54536171 Msa0077570:CDS
CCAGAAGATTGAACTTCAAG+GGG 0.618887 1_2:+54537370 None:intergenic
CCTACAAAAGGCAGATGCTG+CGG 0.625367 1_2:-54536314 Msa0077570:CDS
ACTTATCAAGGTTGTCTGTG+AGG 0.627193 1_2:+54536257 None:intergenic
TTCCTGTGGGAGGTCCAGGA+CGG 0.631302 1_2:+54536173 None:intergenic
AATGTGGCAGTTACTTCAAG+GGG 0.642001 1_2:+54535844 None:intergenic
GGAATTTGAGGCAAATCTAG+AGG 0.645956 1_2:+54535583 None:intergenic
GGAAGGAGCCTTCCTGTGGG+AGG 0.648424 1_2:+54536163 None:intergenic
GCTTTCACAATAAGGGACGA+AGG 0.654614 1_2:+54537462 None:intergenic
GCAGATACCCGCGTCACCAG+AGG 0.664329 1_2:-54535499 Msa0077570:CDS
GCTCCCACCTAGAGTACGAG+AGG 0.667203 1_2:+54536195 None:intergenic
GTGGCAGTTACTTCAAGGGG+CGG 0.672835 1_2:+54535847 None:intergenic
ATAGGAAGGAGCCTTCCTGT+GGG 0.683855 1_2:+54536160 None:intergenic
ATTTGAGGCAAATCTAGAGG+CGG 0.686437 1_2:+54535586 None:intergenic
AAGGAACTTGAAGAAGCTGG+AGG 0.698611 1_2:-54536289 Msa0077570:CDS
TGTCCCGGTTGTCTTCACTG+TGG 0.714687 1_2:+54535621 None:intergenic
CAGAAGATTGAACTTCAAGG+GGG 0.762152 1_2:+54537371 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAATTGCATAATAAAAAT+AGG - chr1_2:54535807-54535826 Msa0077570:intron 10.0%
!! ATAATTGCATAATAAAAATA+GGG - chr1_2:54535808-54535827 Msa0077570:intron 10.0%
!! AAAATATATAGATATAGTAT+AGG - chr1_2:54535864-54535883 Msa0077570:CDS 10.0%
!! TATAAGTATTTATCATATAA+GGG - chr1_2:54536238-54536257 Msa0077570:CDS 10.0%
!! TAATTGCATAATAAAAATAG+GGG - chr1_2:54535809-54535828 Msa0077570:intron 15.0%
!!! TATATATTTTTGTTTTGCAA+AGG + chr1_2:54535854-54535873 None:intergenic 15.0%
!! ATTGTCATTAAAATGTATTT+AGG - chr1_2:54535952-54535971 Msa0077570:intron 15.0%
!! GTATAAGTATTTATCATATA+AGG - chr1_2:54536237-54536256 Msa0077570:CDS 15.0%
!! AAATATTACATCATTATATC+AGG + chr1_2:54536910-54536929 None:intergenic 15.0%
!!! ACATTTGATAAACATATTTT+TGG + chr1_2:54537043-54537062 None:intergenic 15.0%
!!! TTTTTATGATAGTATTGTAT+TGG - chr1_2:54537587-54537606 Msa0077570:CDS 15.0%
!! TATAAACAAATATTCCTTTA+AGG + chr1_2:54537705-54537724 None:intergenic 15.0%
!!! CTTTTGTTTGACAAATTAAA+TGG - chr1_2:54535726-54535745 Msa0077570:intron 20.0%
!!! ACTTAAGTATCTAAGTTTTA+TGG - chr1_2:54535911-54535930 Msa0077570:CDS 20.0%
!! TGGATAAATAACTTGATTTA+GGG - chr1_2:54535982-54536001 Msa0077570:intron 20.0%
!! GATTATGTATAAGTTGTAAA+CGG - chr1_2:54536260-54536279 Msa0077570:CDS 20.0%
!!! TATAAGTTGAAAACAACTTA+TGG - chr1_2:54536331-54536350 Msa0077570:CDS 20.0%
!!! ATTATGTTTTAGTCTCATTT+CGG - chr1_2:54536995-54537014 Msa0077570:intron 20.0%
!!! CAAAGATTTTGATAATATAG+TGG - chr1_2:54537117-54537136 Msa0077570:intron 20.0%
!! TGTAACATATTTAACCTTAA+AGG - chr1_2:54537688-54537707 Msa0077570:five_prime_UTR 20.0%
! AAAATAGGGGAAATAGTTAT+AGG - chr1_2:54535822-54535841 Msa0077570:CDS 25.0%
! AATCAAGTTATTTATCCAGA+GGG + chr1_2:54535980-54535999 None:intergenic 25.0%
! AAATCAAGTTATTTATCCAG+AGG + chr1_2:54535981-54536000 None:intergenic 25.0%
! CTGGATAAATAACTTGATTT+AGG - chr1_2:54535981-54536000 Msa0077570:intron 25.0%
! TAGATTATACGAAAACAGTT+TGG - chr1_2:54536115-54536134 Msa0077570:intron 25.0%
!!! ACTGTTTTGTTTTTGCTATT+AGG - chr1_2:54537069-54537088 Msa0077570:intron 25.0%
TGTGGAAGAGATTAGATTAA+TGG + chr1_2:54535388-54535407 None:intergenic 30.0%
AAGTAGAAAATGGTAGTAGA+GGG + chr1_2:54535466-54535485 None:intergenic 30.0%
CAAGAACAAGAAGTAGAAAA+TGG + chr1_2:54535476-54535495 None:intergenic 30.0%
ATCAATTCTCTTACTCCAAA+GGG - chr1_2:54535518-54535537 Msa0077570:CDS 30.0%
TCAAAAGGATTAGAAGGAAT+TGG + chr1_2:54535617-54535636 None:intergenic 30.0%
GTAGAATCAAAAGGATTAGA+AGG + chr1_2:54535623-54535642 None:intergenic 30.0%
ATCAAGTTATTTATCCAGAG+GGG + chr1_2:54535979-54535998 None:intergenic 30.0%
! AACTTGATTTAGGGTTTGTT+TGG - chr1_2:54535991-54536010 Msa0077570:intron 30.0%
! TTTAGGGTTTGTTTGGAATT+TGG - chr1_2:54535998-54536017 Msa0077570:intron 30.0%
CAAGGATAACTTATGAAAAC+AGG - chr1_2:54536089-54536108 Msa0077570:intron 30.0%
TTACTGTATCAGAGAGTTTA+TGG + chr1_2:54536375-54536394 None:intergenic 30.0%
ATCCTTATGTAGTTGTGTAA+GGG + chr1_2:54536531-54536550 None:intergenic 30.0%
AATCCTTATGTAGTTGTGTA+AGG + chr1_2:54536532-54536551 None:intergenic 30.0%
! ACACAACTACATAAGGATTT+TGG - chr1_2:54536533-54536552 Msa0077570:intron 30.0%
!! ACTACATAAGGATTTTGGAA+TGG - chr1_2:54536538-54536557 Msa0077570:intron 30.0%
AAATGAAGAAGACCTACAAA+AGG - chr1_2:54536690-54536709 Msa0077570:intron 30.0%
TTGTTCATAACTATCTTTCC+TGG - chr1_2:54536937-54536956 Msa0077570:intron 30.0%
!!! TCTCTTCCACACTTTTTTCA+TGG - chr1_2:54535397-54535416 Msa0077570:three_prime_UTR 35.0%
GAAGTAGAAAATGGTAGTAG+AGG + chr1_2:54535467-54535486 None:intergenic 35.0%
CATCAATTCTCTTACTCCAA+AGG - chr1_2:54535517-54535536 Msa0077570:CDS 35.0%
GAAGCTGATATTTCAATCTC+TGG - chr1_2:54535584-54535603 Msa0077570:CDS 35.0%
ACCAGAAGATTGAACTTCAA+GGG + chr1_2:54535650-54535669 None:intergenic 35.0%
! TCTCATTAGCTTAGCTTCTT+TGG - chr1_2:54535686-54535705 Msa0077570:intron 35.0%
TCAAGTTATTTATCCAGAGG+GGG + chr1_2:54535978-54535997 None:intergenic 35.0%
! TATCTGCTTGCTACACTATT+TGG - chr1_2:54536038-54536057 Msa0077570:intron 35.0%
! ATCTGCTTGCTACACTATTT+GGG - chr1_2:54536039-54536058 Msa0077570:intron 35.0%
GACATGTTCATAAGCTTTCA+AGG - chr1_2:54536071-54536090 Msa0077570:intron 35.0%
ATAAGTTGTAAACGGTCTCA+CGG - chr1_2:54536268-54536287 Msa0077570:CDS 35.0%
CAACTTATGGACATGTCATA+AGG - chr1_2:54536344-54536363 Msa0077570:CDS 35.0%
AACCCTTACACAACTACATA+AGG - chr1_2:54536526-54536545 Msa0077570:intron 35.0%
!!! ACATAAGGATTTTGGAATGG+TGG - chr1_2:54536541-54536560 Msa0077570:intron 35.0%
ATCTTCCTTGCAACTTATCA+AGG + chr1_2:54536774-54536793 None:intergenic 35.0%
TTGATAAGTTGCAAGGAAGA+TGG - chr1_2:54536773-54536792 Msa0077570:intron 35.0%
!! TAATATAGTGGACCTTCAGT+TGG - chr1_2:54537129-54537148 Msa0077570:intron 35.0%
!! AATATAGTGGACCTTCAGTT+GGG - chr1_2:54537130-54537149 Msa0077570:intron 35.0%
TAATGTGGCAGTTACTTCAA+GGG + chr1_2:54537176-54537195 None:intergenic 35.0%
CTCAAATTTGTGAGCTAATG+TGG + chr1_2:54537191-54537210 None:intergenic 35.0%
TGCTTTCTACTGCATATACA+TGG - chr1_2:54537228-54537247 Msa0077570:intron 35.0%
ACACTTAAACAAAAAGCCCT+AGG + chr1_2:54537671-54537690 None:intergenic 35.0%
! GAATTGATGCTGTTGCTTCT+AGG + chr1_2:54535506-54535525 None:intergenic 40.0%
AGCAGCAGCTTTCACAATAA+GGG + chr1_2:54535564-54535583 None:intergenic 40.0%
AAGGGGGAAGTAGAATCAAA+AGG + chr1_2:54535632-54535651 None:intergenic 40.0%
CAGAAGATTGAACTTCAAGG+GGG + chr1_2:54535648-54535667 None:intergenic 40.0%
CCAGAAGATTGAACTTCAAG+GGG + chr1_2:54535649-54535668 None:intergenic 40.0%
GACCAGAAGATTGAACTTCA+AGG + chr1_2:54535651-54535670 None:intergenic 40.0%
ATAAGCCCGTTTATCTGAAC+AGG - chr1_2:54536201-54536220 Msa0077570:CDS 40.0%
TAAGCCCGTTTATCTGAACA+GGG - chr1_2:54536202-54536221 Msa0077570:CDS 40.0%
! TAGTTGTGTAAGGGTTTGCT+TGG + chr1_2:54536522-54536541 None:intergenic 40.0%
ACTTATCAAGGTTGTCTGTG+AGG + chr1_2:54536762-54536781 None:intergenic 40.0%
GACAACCTTGATAAGTTGCA+AGG - chr1_2:54536766-54536785 Msa0077570:intron 40.0%
AATGTGGCAGTTACTTCAAG+GGG + chr1_2:54537175-54537194 None:intergenic 40.0%
CTAATGTGGCAGTTACTTCA+AGG + chr1_2:54537177-54537196 None:intergenic 40.0%
ACAAACCACTCACAGTAAAG+AGG + chr1_2:54537332-54537351 None:intergenic 40.0%
! TGAGTGGTTTGTGATGATTC+AGG - chr1_2:54537340-54537359 Msa0077570:intron 40.0%
AAAACCACAGTGAAGACAAC+CGG - chr1_2:54537391-54537410 Msa0077570:CDS 40.0%
! ATTTGAGGCAAATCTAGAGG+CGG + chr1_2:54537433-54537452 None:intergenic 40.0%
! GGAATTTGAGGCAAATCTAG+AGG + chr1_2:54537436-54537455 None:intergenic 40.0%
! CTCAATGCATCTGGAATTTG+AGG + chr1_2:54537448-54537467 None:intergenic 40.0%
CTCAAATTCCAGATGCATTG+AGG - chr1_2:54537446-54537465 Msa0077570:CDS 40.0%
TTGAGGCCACAATCTAATAG+AGG - chr1_2:54537463-54537482 Msa0077570:CDS 40.0%
CCACTTCCTCTATTAGATTG+TGG + chr1_2:54537472-54537491 None:intergenic 40.0%
CCACAATCTAATAGAGGAAG+TGG - chr1_2:54537469-54537488 Msa0077570:CDS 40.0%
GGGAAGCCATGAAAAAAGTG+TGG + chr1_2:54535406-54535425 None:intergenic 45.0%
GGCTTGATATGTTTGCCCTT+TGG + chr1_2:54535536-54535555 None:intergenic 45.0%
GCTTTCACAATAAGGGACGA+AGG + chr1_2:54535557-54535576 None:intergenic 45.0%
CAGCAGCAGCTTTCACAATA+AGG + chr1_2:54535565-54535584 None:intergenic 45.0%
CCCCTTGAAGTTCAATCTTC+TGG - chr1_2:54535646-54535665 Msa0077570:CDS 45.0%
AAATGTATTTAGGCCCCCTC+TGG - chr1_2:54535962-54535981 Msa0077570:intron 45.0%
CTTGCCCTGTTCAGATAAAC+GGG + chr1_2:54536209-54536228 None:intergenic 45.0%
GCTTGCCCTGTTCAGATAAA+CGG + chr1_2:54536210-54536229 None:intergenic 45.0%
GCTAAGGAACTTGAAGAAGC+TGG - chr1_2:54536724-54536743 Msa0077570:intron 45.0%
AAGGAACTTGAAGAAGCTGG+AGG - chr1_2:54536727-54536746 Msa0077570:intron 45.0%
AGGCTCCTTCCTATAACTCT+TGG - chr1_2:54536865-54536884 Msa0077570:intron 45.0%
CCTGTCCAAGAGTTATAGGA+AGG + chr1_2:54536873-54536892 None:intergenic 45.0%
CCTTCCTATAACTCTTGGAC+AGG - chr1_2:54536870-54536889 Msa0077570:intron 45.0%
CAGACCTGTCCAAGAGTTAT+AGG + chr1_2:54536877-54536896 None:intergenic 45.0%
GGAGATCAAAGCACACACAT+AGG + chr1_2:54537022-54537041 None:intergenic 45.0%
GCTCACAAATTTGAGCTCGT+AGG - chr1_2:54537196-54537215 Msa0077570:intron 45.0%
AACCACTCACAGTAAAGAGG+CGG + chr1_2:54537329-54537348 None:intergenic 45.0%
AAACCACAGTGAAGACAACC+GGG - chr1_2:54537392-54537411 Msa0077570:CDS 45.0%
GATATACCCAACCCACACTA+TGG - chr1_2:54537641-54537660 Msa0077570:five_prime_UTR 45.0%
GGGGTGAAGAAGGAGATTGA+GGG + chr1_2:54535426-54535445 None:intergenic 50.0%
AGGGGTGAAGAAGGAGATTG+AGG + chr1_2:54535427-54535446 None:intergenic 50.0%
GAGAAGTTGAGGGGTGAAGA+AGG + chr1_2:54535436-54535455 None:intergenic 50.0%
GGTGAGAGAGAGAAGTTGAG+GGG + chr1_2:54535445-54535464 None:intergenic 50.0%
GGGTGAGAGAGAGAAGTTGA+GGG + chr1_2:54535446-54535465 None:intergenic 50.0%
AGGGTGAGAGAGAGAAGTTG+AGG + chr1_2:54535447-54535466 None:intergenic 50.0%
GCTGTTGCTGCGCTAAATAG+AGG - chr1_2:54536658-54536677 Msa0077570:intron 50.0%
CCTACAAAAGGCAGATGCTG+CGG - chr1_2:54536702-54536721 Msa0077570:intron 50.0%
TTCTCCTCTCGTACTCTAGG+TGG - chr1_2:54536817-54536836 Msa0077570:intron 50.0%
TCTCCTCTCGTACTCTAGGT+GGG - chr1_2:54536818-54536837 Msa0077570:intron 50.0%
ATAGGAAGGAGCCTTCCTGT+GGG + chr1_2:54536859-54536878 None:intergenic 50.0%
TATAGGAAGGAGCCTTCCTG+TGG + chr1_2:54536860-54536879 None:intergenic 50.0%
GTTGCTCAGTTGCAACTTCC+AGG + chr1_2:54536958-54536977 None:intergenic 50.0%
CGGCAACTGTGAAAATGTCC+CGG + chr1_2:54537413-54537432 None:intergenic 50.0%
GATTGTGGCCTCAATGCATC+TGG + chr1_2:54537457-54537476 None:intergenic 50.0%
AGGAGATAGAGGCGAGCTAA+GGG - chr1_2:54537537-54537556 Msa0077570:CDS 50.0%
! CCGCAGCATCTGCCTTTTGT+AGG + chr1_2:54536705-54536724 None:intergenic 55.0%
AAAGGCAGATGCTGCGGCTA+AGG - chr1_2:54536708-54536727 Msa0077570:intron 55.0%
GCGTTCTCCTCTCGTACTCT+AGG - chr1_2:54536814-54536833 Msa0077570:intron 55.0%
ACCTTCAGTTGGGTGCTCCA+TGG - chr1_2:54537140-54537159 Msa0077570:intron 55.0%
GTTACTTCAAGGGGCGGTAG+AGG + chr1_2:54537166-54537185 None:intergenic 55.0%
GTGGCAGTTACTTCAAGGGG+CGG + chr1_2:54537172-54537191 None:intergenic 55.0%
GACCGCCTCTTTACTGTGAG+TGG - chr1_2:54537324-54537343 Msa0077570:intron 55.0%
TGTCCCGGTTGTCTTCACTG+TGG + chr1_2:54537398-54537417 None:intergenic 55.0%
! TCTATCTCCTCTGGTGACGC+GGG + chr1_2:54537527-54537546 None:intergenic 55.0%
! CTCTATCTCCTCTGGTGACG+CGG + chr1_2:54537528-54537547 None:intergenic 55.0%
TAGCTCGCCTCTATCTCCTC+TGG + chr1_2:54537536-54537555 None:intergenic 55.0%
GAGGAGATAGAGGCGAGCTA+AGG - chr1_2:54537536-54537555 Msa0077570:CDS 55.0%
GGAGCTCCATAGTGTGGGTT+GGG + chr1_2:54537650-54537669 None:intergenic 55.0%
AGGAGCTCCATAGTGTGGGT+TGG + chr1_2:54537651-54537670 None:intergenic 55.0%
ACCCACACTATGGAGCTCCT+AGG - chr1_2:54537651-54537670 Msa0077570:five_prime_UTR 55.0%
CCCTAGGAGCTCCATAGTGT+GGG + chr1_2:54537655-54537674 None:intergenic 55.0%
CCCACACTATGGAGCTCCTA+GGG - chr1_2:54537652-54537671 Msa0077570:five_prime_UTR 55.0%
GCTCCCACCTAGAGTACGAG+AGG + chr1_2:54536824-54536843 None:intergenic 60.0%
TTCCTGTGGGAGGTCCAGGA+CGG + chr1_2:54536846-54536865 None:intergenic 60.0%
! GCCATGGAGCACCCAACTGA+AGG + chr1_2:54537144-54537163 None:intergenic 60.0%
CGCGTCACCAGAGGAGATAG+AGG - chr1_2:54537526-54537545 Msa0077570:CDS 60.0%
GCCCTAGGAGCTCCATAGTG+TGG + chr1_2:54537656-54537675 None:intergenic 60.0%
ACTCTAGGTGGGAGCCGTCC+TGG - chr1_2:54536829-54536848 Msa0077570:intron 65.0%
GTCCTGGACCTCCCACAGGA+AGG - chr1_2:54536845-54536864 Msa0077570:intron 65.0%
AGCCTTCCTGTGGGAGGTCC+AGG + chr1_2:54536850-54536869 None:intergenic 65.0%
GGAAGGAGCCTTCCTGTGGG+AGG + chr1_2:54536856-54536875 None:intergenic 65.0%
TCAAGGGGCGGTAGAGGCCA+TGG + chr1_2:54537160-54537179 None:intergenic 65.0%
GCAGATACCCGCGTCACCAG+AGG - chr1_2:54537517-54537536 Msa0077570:CDS 65.0%
AGCCGTCCTGGACCTCCCAC+AGG - chr1_2:54536841-54536860 Msa0077570:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 54535279 54537759 54535279 ID=Msa0077570;Name=Msa0077570
chr1_2 mRNA 54535279 54537759 54535279 ID=Msa0077570-mRNA-1;Parent=Msa0077570;Name=Msa0077570-mRNA-1;_AED=0.06;_eAED=0.06;_QI=137|1|1|1|1|1|4|183|276
chr1_2 exon 54535279 54535676 54535279 ID=Msa0077570-mRNA-1:exon:16928;Parent=Msa0077570-mRNA-1
chr1_2 exon 54535821 54535947 54535821 ID=Msa0077570-mRNA-1:exon:16927;Parent=Msa0077570-mRNA-1
chr1_2 exon 54536147 54536383 54536147 ID=Msa0077570-mRNA-1:exon:16926;Parent=Msa0077570-mRNA-1
chr1_2 exon 54537371 54537759 54537371 ID=Msa0077570-mRNA-1:exon:16925;Parent=Msa0077570-mRNA-1
chr1_2 five_prime_UTR 54537623 54537759 54537623 ID=Msa0077570-mRNA-1:five_prime_utr;Parent=Msa0077570-mRNA-1
chr1_2 CDS 54537371 54537622 54537371 ID=Msa0077570-mRNA-1:cds;Parent=Msa0077570-mRNA-1
chr1_2 CDS 54536147 54536383 54536147 ID=Msa0077570-mRNA-1:cds;Parent=Msa0077570-mRNA-1
chr1_2 CDS 54535821 54535947 54535821 ID=Msa0077570-mRNA-1:cds;Parent=Msa0077570-mRNA-1
chr1_2 CDS 54535462 54535676 54535462 ID=Msa0077570-mRNA-1:cds;Parent=Msa0077570-mRNA-1
chr1_2 three_prime_UTR 54535279 54535461 54535279 ID=Msa0077570-mRNA-1:three_prime_utr;Parent=Msa0077570-mRNA-1
Gene Sequence

>Msa0077570

ATGGCTTCCCTCAATCTCCTTCTTCACCCCTCAACTTCTCTCTCTCACCCTCTACTACCATTTTCTACTTCTTGTTCTTGTTTCTTTCCTAGAAGCAACAGCATCAATTCTCTTACTCCAAAGGGCAAACATATCAAGCCTTCGTCCCTTATTGTGAAAGCTGCTGCTGAAGCTGATATTTCAATCTCTGGCTCTATTCCAATTCCTTCTAATCCTTTTGATTCTACTTCCCCCTTGAAGTTCAATCTTCTGAGTGCTGTTGCTGCGCTAAATAGAGGTCTTGCTGCAAATGAAGAAGACCTACAAAAGGCAGATGCTGCGGCTAAGGAACTTGAAGAAGCTGGAGGATTAGTAGACCTCACAGACAACCTTGATAAGTTGCAAGGAAGATGGAAACTGATATATAGCAGCGCGTTCTCCTCTCGTACTCTAGGTGGGAGCCGTCCTGGACCTCCCACAGGAAGGCTCCTTCCTATAACTCTTGGACAGGTTTTTCAACGAATTGACATCTTAAGCAAAGATTTTGATAATATAGTGGACCTTCAGTTGGGTGCTCCATGGCCTCTACCGCCCCTTGAAGTAACTGCCACATTAGCTCACAAATTTGAGCTCGTAGGATCTTCGAAGATCAAGATAATATTTGAGAAAACCACAGTGAAGACAACCGGGACATTTTCACAGTTGCCGCCTCTAGATTTGCCTCAAATTCCAGATGCATTGAGGCCACAATCTAATAGAGGAAGTGGTGATTTTGAAGTTACATATCTTGACGCAGATACCCGCGTCACCAGAGGAGATAGAGGCGAGCTAAGGGTCTTTGTGATTGCATAA

Protein sequence

>Msa0077570

MASLNLLLHPSTSLSHPLLPFSTSCSCFFPRSNSINSLTPKGKHIKPSSLIVKAAAEADISISGSIPIPSNPFDSTSPLKFNLLSAVAALNRGLAANEEDLQKADAAAKELEEAGGLVDLTDNLDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQVFQRIDILSKDFDNIVDLQLGAPWPLPPLEVTATLAHKFELVGSSKIKIIFEKTTVKTTGTFSQLPPLDLPQIPDALRPQSNRGSGDFEVTYLDADTRVTRGDRGELRVFVIA*