Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1436930 | QKS31867.1 | 99.341 | 455 | 3 | 0 | 1 | 455 | 1 | 455 | 0.0 | 914 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1436930 | sp|P05493|ATPAM_PEA | 99.341 | 455 | 3 | 0 | 1 | 455 | 1 | 455 | 0.0 | 914 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1436930 | A0A7D4Z6E4 | 99.341 | 455 | 3 | 0 | 1 | 455 | 1 | 455 | 0.0 | 914 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1392030 | Msa1436930 | 0.838317 | 3.089497e-57 | -8.615850e-47 |
| Msa1392120 | Msa1436930 | 0.890116 | 1.317272e-73 | -8.615850e-47 |
| Msa0697990 | Msa1436930 | 0.899862 | 1.301456e-77 | -8.615850e-47 |
| Msa0983130 | Msa1436930 | 0.824976 | 6.028596e-54 | -8.615850e-47 |
| Msa0983190 | Msa1436930 | 0.821466 | 3.978564e-53 | -8.615850e-47 |
| Msa0983230 | Msa1436930 | 0.824954 | 6.100391e-54 | -8.615850e-47 |
| Msa0983300 | Msa1436930 | 0.825930 | 3.582270e-54 | -8.615850e-47 |
| Msa0983460 | Msa1436930 | 0.886515 | 3.197395e-72 | -8.615850e-47 |
| Msa0983520 | Msa1436930 | 0.819532 | 1.105215e-52 | -8.615850e-47 |
| Msa0902770 | Msa1436930 | 0.802973 | 4.350581e-49 | -8.615850e-47 |
| Msa0908850 | Msa1436930 | 0.834492 | 2.904669e-56 | -8.615850e-47 |
| Msa0920060 | Msa1436930 | 0.804617 | 1.982559e-49 | -8.615850e-47 |
| Msa0944920 | Msa1436930 | 0.814424 | 1.551596e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1436930 | MtrunA17_MTg0490471 | 99.341 | 455 | 3 | 0 | 1 | 455 | 1 | 455 | 0.0 | 912 |
| Msa1436930 | MtrunA17_Chr4g0015651 | 64.080 | 451 | 153 | 1 | 4 | 454 | 3 | 444 | 0.0 | 581 |
| Msa1436930 | MtrunA17_Chr4g0016741 | 64.080 | 451 | 153 | 1 | 4 | 454 | 3 | 444 | 0.0 | 581 |
| Msa1436930 | MtrunA17_CPg0492941 | 64.080 | 451 | 153 | 1 | 4 | 454 | 3 | 444 | 0.0 | 581 |
| Msa1436930 | MtrunA17_Chr2g0278821 | 65.625 | 224 | 77 | 0 | 231 | 454 | 2 | 225 | 6.04e-101 | 305 |
| Msa1436930 | MtrunA17_Chr2g0286451 | 54.787 | 188 | 76 | 1 | 84 | 271 | 11 | 189 | 1.27e-62 | 202 |
| Msa1436930 | MtrunA17_Chr5g0413061 | 84.286 | 70 | 10 | 1 | 220 | 288 | 15 | 84 | 1.03e-32 | 119 |
| Msa1436930 | MtrunA17_Chr4g0040631 | 49.587 | 121 | 61 | 0 | 4 | 124 | 3 | 123 | 2.95e-31 | 117 |
| Msa1436930 | MtrunA17_Chr7g0250051 | 26.748 | 329 | 230 | 4 | 62 | 381 | 56 | 382 | 3.88e-25 | 108 |
| Msa1436930 | MtrunA17_Chr1g0211291 | 26.888 | 331 | 228 | 5 | 62 | 381 | 57 | 384 | 1.87e-24 | 106 |
| Msa1436930 | MtrunA17_Chr4g0061471 | 59.740 | 77 | 29 | 1 | 99 | 175 | 1 | 75 | 1.89e-23 | 94.0 |
| Msa1436930 | MtrunA17_Chr1g0208751 | 25.253 | 297 | 201 | 4 | 90 | 377 | 150 | 434 | 1.48e-19 | 91.7 |
| Msa1436930 | MtrunA17_Chr4g0016371 | 25.581 | 387 | 251 | 9 | 68 | 436 | 30 | 397 | 2.21e-19 | 90.5 |
| Msa1436930 | MtrunA17_Chr3g0090971 | 25.581 | 387 | 251 | 9 | 68 | 436 | 69 | 436 | 3.48e-19 | 90.5 |
| Msa1436930 | MtrunA17_CPg0493401 | 25.581 | 387 | 251 | 9 | 68 | 436 | 69 | 436 | 3.70e-19 | 90.1 |
| Msa1436930 | MtrunA17_Chr1g0208761 | 24.916 | 297 | 202 | 4 | 90 | 377 | 153 | 437 | 9.48e-19 | 89.4 |
| Msa1436930 | MtrunA17_Chr7g0229391 | 25.323 | 387 | 252 | 9 | 68 | 436 | 69 | 436 | 2.94e-18 | 87.4 |
| Msa1436930 | MtrunA17_Chr7g0276011 | 27.600 | 250 | 159 | 4 | 68 | 306 | 69 | 307 | 3.56e-16 | 79.3 |
| Msa1436930 | MtrunA17_Chr2g0310971 | 26.944 | 360 | 207 | 12 | 99 | 434 | 29 | 356 | 3.11e-15 | 77.8 |
| Msa1436930 | MtrunA17_Chr2g0310861 | 26.944 | 360 | 207 | 12 | 99 | 434 | 29 | 356 | 3.11e-15 | 77.8 |
| Msa1436930 | MtrunA17_Chr2g0310911 | 26.944 | 360 | 207 | 12 | 99 | 434 | 29 | 356 | 3.11e-15 | 77.8 |
| Msa1436930 | MtrunA17_Chr2g0311041 | 26.944 | 360 | 207 | 12 | 99 | 434 | 29 | 356 | 3.11e-15 | 77.8 |
| Msa1436930 | MtrunA17_Chr6g0470741 | 27.523 | 218 | 136 | 4 | 68 | 274 | 69 | 275 | 1.34e-13 | 71.2 |
| Msa1436930 | MtrunA17_Chr4g0000341 | 26.966 | 267 | 164 | 8 | 133 | 382 | 214 | 466 | 5.51e-13 | 71.2 |
| Msa1436930 | MtrunA17_Chr7g0222041 | 27.119 | 236 | 130 | 6 | 68 | 292 | 69 | 273 | 1.02e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1436930 | ATMG01190.1 | 93.187 | 455 | 31 | 0 | 1 | 455 | 1 | 455 | 0.0 | 863 |
| Msa1436930 | AT2G07698.1 | 93.778 | 450 | 28 | 0 | 6 | 455 | 276 | 725 | 0.0 | 859 |
| Msa1436930 | ATCG00120.1 | 64.080 | 451 | 153 | 1 | 4 | 454 | 3 | 444 | 0.0 | 582 |
| Msa1436930 | AT4G38510.1 | 26.748 | 329 | 230 | 4 | 62 | 381 | 56 | 382 | 3.98e-25 | 108 |
| Msa1436930 | AT4G38510.3 | 26.748 | 329 | 230 | 4 | 62 | 381 | 56 | 382 | 3.98e-25 | 108 |
| Msa1436930 | AT4G38510.4 | 26.748 | 329 | 230 | 4 | 62 | 381 | 56 | 382 | 3.98e-25 | 108 |
| Msa1436930 | AT4G38510.2 | 26.748 | 329 | 230 | 4 | 62 | 381 | 56 | 382 | 3.98e-25 | 108 |
| Msa1436930 | AT4G38510.5 | 26.748 | 329 | 230 | 4 | 62 | 381 | 63 | 389 | 4.76e-25 | 108 |
| Msa1436930 | AT1G76030.1 | 26.140 | 329 | 232 | 4 | 62 | 381 | 55 | 381 | 7.98e-24 | 104 |
| Msa1436930 | AT1G20260.1 | 26.061 | 330 | 232 | 4 | 62 | 381 | 55 | 382 | 1.52e-23 | 103 |
| Msa1436930 | AT5G08670.1 | 25.658 | 304 | 197 | 5 | 87 | 377 | 147 | 434 | 2.83e-20 | 94.4 |
| Msa1436930 | AT5G08690.1 | 26.000 | 300 | 201 | 4 | 87 | 377 | 147 | 434 | 3.33e-20 | 94.4 |
| Msa1436930 | AT5G08680.1 | 25.658 | 304 | 197 | 5 | 87 | 377 | 150 | 437 | 3.42e-20 | 94.4 |
| Msa1436930 | ATCG00480.1 | 25.581 | 387 | 251 | 9 | 68 | 436 | 69 | 436 | 1.09e-18 | 89.4 |
| Msa1436930 | AT1G78900.1 | 27.341 | 267 | 163 | 8 | 133 | 382 | 213 | 465 | 7.86e-13 | 71.2 |
| Msa1436930 | AT1G78900.2 | 27.341 | 267 | 163 | 8 | 133 | 382 | 213 | 465 | 7.86e-13 | 71.2 |
Find 138 sgRNAs with CRISPR-Local
Find 306 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTTCTGGCCCCATATTC+TGG | 0.061918 | tig0028042:-8131 | Msa1436930:CDS |
| TCCTGCACCTCTGCAATTTC+TGG | 0.152322 | tig0028042:-8144 | Msa1436930:CDS |
| CCCATGGCACACCCAGAATA+TGG | 0.195151 | tig0028042:+8119 | None:intergenic |
| GATGGGATTGCACGTGTTTA+TGG | 0.234419 | tig0028042:-8755 | Msa1436930:CDS |
| CCCTTGAGTTCATTTGCTTT+TGG | 0.244582 | tig0028042:+8306 | None:intergenic |
| ATATTGGATTCTGTTGGTTC+TGG | 0.250883 | tig0028042:-7478 | Msa1436930:CDS |
| GTGGCCGCCTTTGCTCAATT+TGG | 0.271705 | tig0028042:-7660 | Msa1436930:CDS |
| CTTTCTCAAAAGGCGTTTCC+TGG | 0.277584 | tig0028042:-7426 | Msa1436930:CDS |
| CCATATTCTGGGTGTGCCAT+GGG | 0.327234 | tig0028042:-8119 | Msa1436930:CDS |
| CCCATATTCTGGGTGTGCCA+TGG | 0.331751 | tig0028042:-8120 | Msa1436930:CDS |
| GGGGAATATTTCCGCGATAA+TGG | 0.339552 | tig0028042:-8098 | Msa1436930:CDS |
| CGGTAGTTTAAAACTTGAAT+TGG | 0.357675 | tig0028042:-7697 | Msa1436930:CDS |
| CCATGGCACACCCAGAATAT+GGG | 0.370518 | tig0028042:+8120 | None:intergenic |
| AATTTCTGGCCCCATATTCT+GGG | 0.380818 | tig0028042:-8130 | Msa1436930:CDS |
| CGAGATTCAAGCTGGGGAAT+TGG | 0.382867 | tig0028042:-8726 | Msa1436930:CDS |
| CGGGTTCAATAATAGAATAT+TGG | 0.383788 | tig0028042:-7494 | Msa1436930:CDS |
| CTGGACAAGTTCTCGAGCCT+TGG | 0.389889 | tig0028042:-7407 | Msa1436930:CDS |
| GTGCACGAGCCTATGCAAAC+TGG | 0.391059 | tig0028042:-8437 | Msa1436930:CDS |
| TCAAACTACCTGCGCCTGTC+TGG | 0.396240 | tig0028042:+7916 | None:intergenic |
| GATAACATTGGTGGGAATAT+AGG | 0.397886 | tig0028042:+7851 | None:intergenic |
| GGTCAACAAGAACTTATAAT+CGG | 0.405206 | tig0028042:-8377 | Msa1436930:CDS |
| CACCAATGTTATCTCCATTA+CGG | 0.408104 | tig0028042:-7841 | Msa1436930:CDS |
| CTATGATGATCTTAGTAAAC+AGG | 0.411680 | tig0028042:-8057 | Msa1436930:CDS |
| GGGCGTGTGGTCGACGCGTT+GGG | 0.411770 | tig0028042:-8548 | Msa1436930:CDS |
| GTAATTTATGCAGCTGTCAA+TGG | 0.412324 | tig0028042:-7528 | Msa1436930:CDS |
| AATGTCGGAATTGTTGTCTT+TGG | 0.413766 | tig0028042:-8653 | Msa1436930:CDS |
| TATTGGATTCTGTTGGTTCT+GGG | 0.416526 | tig0028042:-7477 | Msa1436930:CDS |
| TCTTGTTGACCACGGCCTAT+AGG | 0.423569 | tig0028042:+8389 | None:intergenic |
| ATAATCGGGGACCGACAAAC+TGG | 0.423851 | tig0028042:-8362 | Msa1436930:CDS |
| TACGGATGGACAAATCTGTT+TGG | 0.423969 | tig0028042:-7823 | Msa1436930:CDS |
| AGACCTTGATGCTGCGACTC+AGG | 0.431634 | tig0028042:-7634 | Msa1436930:CDS |
| CGCTATTCCTTTCACACCGC+TGG | 0.433904 | tig0028042:+8694 | None:intergenic |
| TGTAAATAGAAAACATCGCC+TGG | 0.434531 | tig0028042:+7975 | None:intergenic |
| AAGATCTCCTTCTTTGATAG+AGG | 0.436009 | tig0028042:+8622 | None:intergenic |
| AGAGCCCCTCTTCCATCAAT+AGG | 0.437583 | tig0028042:+8521 | None:intergenic |
| GCCAGAAATTGCAGAGGTGC+AGG | 0.454425 | tig0028042:+8143 | None:intergenic |
| GGCTTATCTGTCAGTCGCGT+CGG | 0.459939 | tig0028042:-7756 | Msa1436930:CDS |
| AGGGCGTGTGGTCGACGCGT+TGG | 0.460440 | tig0028042:-8549 | Msa1436930:CDS |
| CCAGGCCGTGAGGCTTTCCC+AGG | 0.466468 | tig0028042:-7993 | Msa1436930:CDS |
| CGAGTGGTCTCAGTTGGAGA+TGG | 0.468808 | tig0028042:-8773 | Msa1436930:CDS |
| TTGAAAATTAGTGTAAAAGT+TGG | 0.471774 | tig0028042:+8811 | None:intergenic |
| GTAGATAGCCTGGTTCCTAT+AGG | 0.472084 | tig0028042:-8404 | Msa1436930:CDS |
| TGCGGCTCTTTCTAAGAGAC+GGG | 0.472268 | tig0028042:+7950 | None:intergenic |
| GGAGATCTTGTCAAACGTAC+TGG | 0.476032 | tig0028042:-8608 | Msa1436930:CDS |
| GATTTACGTTCTATAATCCC+TGG | 0.478978 | tig0028042:+8461 | None:intergenic |
| GCTTATCTGTCAGTCGCGTC+GGG | 0.479207 | tig0028042:-7755 | Msa1436930:CDS |
| GTCAACAAGAACTTATAATC+GGG | 0.479795 | tig0028042:-8376 | Msa1436930:CDS |
| CCAGCTTGTGTTTCAATGAC+GGG | 0.480508 | tig0028042:+7885 | None:intergenic |
| GGCGTTGGTAAGTACGCACT+TGG | 0.482026 | tig0028042:-7456 | Msa1436930:CDS |
| GCGTTGGTAAGTACGCACTT+GGG | 0.483859 | tig0028042:-7455 | Msa1436930:CDS |
| CCTGGGAAAGCCTCACGGCC+TGG | 0.485317 | tig0028042:+7993 | None:intergenic |
| GTCAATGGATTAAACAGGTC+GGG | 0.486474 | tig0028042:-7513 | Msa1436930:CDS |
| TCCAGCTTGTGTTTCAATGA+CGG | 0.487192 | tig0028042:+7884 | None:intergenic |
| TCTTGTAGCAGCCACCGCTT+CGG | 0.488213 | tig0028042:-8168 | Msa1436930:CDS |
| TTGTGTTTCAATGACGGGTA+AGG | 0.488761 | tig0028042:+7890 | None:intergenic |
| GGATTGAACGAGATTCAAGC+TGG | 0.489746 | tig0028042:-8734 | Msa1436930:CDS |
| ATTCTGTTGGTTCTGGGCGT+TGG | 0.493328 | tig0028042:-7471 | Msa1436930:CDS |
| AAGCCTCACGGCCTGGTGGT+CGG | 0.497211 | tig0028042:+8000 | None:intergenic |
| TGTGGATGTTCCTGCGGGAA+AGG | 0.497811 | tig0028042:-8579 | Msa1436930:CDS |
| AGCGGTGGCTGCTACAAGAA+TGG | 0.504417 | tig0028042:+8172 | None:intergenic |
| AATAGAATATTGGATTCTGT+TGG | 0.505499 | tig0028042:-7484 | Msa1436930:CDS |
| ACAGATTTGTCCATCCGTAA+TGG | 0.506456 | tig0028042:+7827 | None:intergenic |
| CGTTGGTAAGTACGCACTTG+GGG | 0.507408 | tig0028042:-7454 | Msa1436930:CDS |
| ATTTACGTTCTATAATCCCT+GGG | 0.509577 | tig0028042:+8462 | None:intergenic |
| GCGTTGGGAGTACCTATTGA+TGG | 0.515529 | tig0028042:-8533 | Msa1436930:CDS |
| CAGCTGTCAATGGATTAAAC+AGG | 0.527535 | tig0028042:-7518 | Msa1436930:CDS |
| CATATTCTGGGTGTGCCATG+GGG | 0.529967 | tig0028042:-8118 | Msa1436930:CDS |
| ATCGGTCGAGTGGTCTCAGT+TGG | 0.534793 | tig0028042:-8779 | Msa1436930:CDS |
| TCTTAGAAAGAGCCGCAAAA+CGG | 0.540139 | tig0028042:-7944 | Msa1436930:CDS |
| TTGCGGCTCTTTCTAAGAGA+CGG | 0.541467 | tig0028042:+7949 | None:intergenic |
| ACCAAAAGCAAATGAACTCA+AGG | 0.542636 | tig0028042:-8307 | Msa1436930:CDS |
| GAGTGGTCTCAGTTGGAGAT+GGG | 0.543938 | tig0028042:-8772 | Msa1436930:CDS |
| GGAGTACCTATTGATGGAAG+AGG | 0.544750 | tig0028042:-8527 | Msa1436930:CDS |
| GAATTTGCCAGCGGTGTGAA+AGG | 0.545035 | tig0028042:-8701 | Msa1436930:CDS |
| ATCTATTGTGGATGTTCCTG+CGG | 0.547825 | tig0028042:-8585 | Msa1436930:CDS |
| CGTGTCGAAGTGAAAGCCCC+AGG | 0.547908 | tig0028042:-8479 | Msa1436930:CDS |
| TGCACGAGCCTATGCAAACT+GGG | 0.551583 | tig0028042:-8436 | Msa1436930:CDS |
| ACTCAGGCATTACTCAATAG+AGG | 0.553172 | tig0028042:-7618 | Msa1436930:CDS |
| GAGTACCTATTGATGGAAGA+GGG | 0.553330 | tig0028042:-8526 | Msa1436930:CDS |
| GTTAAAAGCGGTAGATAGCC+TGG | 0.557455 | tig0028042:-8414 | Msa1436930:CDS |
| CGGTCTGACCAGACAGGCGC+AGG | 0.559911 | tig0028042:-7924 | Msa1436930:CDS |
| AGTGATACCTCTATCAAAGA+AGG | 0.560302 | tig0028042:-8629 | Msa1436930:CDS |
| TATTGTGTCTATGTAGCGAT+TGG | 0.562656 | tig0028042:-8260 | Msa1436930:CDS |
| TGATCTTAGTAAACAGGCCG+TGG | 0.570285 | tig0028042:-8051 | Msa1436930:CDS |
| ATTGGAAGTGGTGCATATTG+TGG | 0.571463 | tig0028042:+7567 | None:intergenic |
| AACACAAGCTGGAGACGTAT+CGG | 0.571609 | tig0028042:-7874 | Msa1436930:CDS |
| CATGGCACACCCAGAATATG+GGG | 0.573228 | tig0028042:+8121 | None:intergenic |
| CGTAATGGAGATAACATTGG+TGG | 0.573862 | tig0028042:+7842 | None:intergenic |
| AAAGGCTATGCTAGGGCGTG+TGG | 0.574440 | tig0028042:-8561 | Msa1436930:CDS |
| AGGTGCAGGATCCGAAGCGG+TGG | 0.577100 | tig0028042:+8157 | None:intergenic |
| GCAAAACGGTCTGACCAGAC+AGG | 0.577874 | tig0028042:-7930 | Msa1436930:CDS |
| CAAACGTACTGGATCTATTG+TGG | 0.579577 | tig0028042:-8597 | Msa1436930:CDS |
| CCCGTCATTGAAACACAAGC+TGG | 0.581604 | tig0028042:-7885 | Msa1436930:CDS |
| CAAGGCTCGAGAACTTGTCC+AGG | 0.582250 | tig0028042:+7408 | None:intergenic |
| CCTAGCATAGCCTTTCCCGC+AGG | 0.586550 | tig0028042:+8569 | None:intergenic |
| GTCTGAGCCAAATTGAGCAA+AGG | 0.587947 | tig0028042:+7653 | None:intergenic |
| ATGCCTGAGTCGCAGCATCA+AGG | 0.595685 | tig0028042:+7631 | None:intergenic |
| TTATTGTTACGCCGACCACC+AGG | 0.596017 | tig0028042:-8011 | Msa1436930:CDS |
| GATAAGCCGACGTTAATAGC+AGG | 0.596397 | tig0028042:+7771 | None:intergenic |
| AATCTTGAGAATGAGAATGT+CGG | 0.606152 | tig0028042:-8668 | Msa1436930:CDS |
| AATGTTATCTCCATTACGGA+TGG | 0.606764 | tig0028042:-7837 | Msa1436930:CDS |
| GTAAATAGAAAACATCGCCT+GGG | 0.606785 | tig0028042:+7976 | None:intergenic |
| GATTGAACGAGATTCAAGCT+GGG | 0.609055 | tig0028042:-8733 | Msa1436930:CDS |
| CCAAAAGCAAATGAACTCAA+GGG | 0.617919 | tig0028042:-8306 | Msa1436930:CDS |
| GGGAAAGCCTCACGGCCTGG+TGG | 0.618379 | tig0028042:+7996 | None:intergenic |
| TTATAAGTTCTTGTTGACCA+CGG | 0.624021 | tig0028042:+8381 | None:intergenic |
| CTGCGGGAAAGGCTATGCTA+GGG | 0.624165 | tig0028042:-8568 | Msa1436930:CDS |
| ATATTCTGGGTGTGCCATGG+GGG | 0.625634 | tig0028042:-8117 | Msa1436930:CDS |
| CATCGCCTGGGAAAGCCTCA+CGG | 0.626447 | tig0028042:+7988 | None:intergenic |
| TCTATTGTGGATGTTCCTGC+GGG | 0.626777 | tig0028042:-8584 | Msa1436930:CDS |
| TGTCAATGGATTAAACAGGT+CGG | 0.628891 | tig0028042:-7514 | Msa1436930:CDS |
| TGTTTCAATGACGGGTAAGG+CGG | 0.628911 | tig0028042:+7893 | None:intergenic |
| TGACATTTGTCGATATGCCA+CGG | 0.634400 | tig0028042:+8034 | None:intergenic |
| ATCCGTAATGGAGATAACAT+TGG | 0.638071 | tig0028042:+7839 | None:intergenic |
| CATTACTCAATAGAGGTGCA+AGG | 0.648260 | tig0028042:-7611 | Msa1436930:CDS |
| AGTGGATGAGATCGGTCGAG+TGG | 0.651008 | tig0028042:-8789 | Msa1436930:CDS |
| ATTAGACCTGCTATTAACGT+CGG | 0.655163 | tig0028042:-7777 | Msa1436930:CDS |
| TGAGCCAAATTGAGCAAAGG+CGG | 0.658843 | tig0028042:+7656 | None:intergenic |
| GGAATTCTCTGTAAGAGCTG+CGG | 0.660057 | tig0028042:-8864 | Msa1436930:CDS |
| TTTACGTTCTATAATCCCTG+GGG | 0.660540 | tig0028042:+8463 | None:intergenic |
| CAATGTCTCACTCTCAGAGG+TGG | 0.660553 | tig0028042:+8283 | None:intergenic |
| ATGCGTGCATTCCATTATCG+CGG | 0.661454 | tig0028042:+8087 | None:intergenic |
| GTAATGGAGATAACATTGGT+GGG | 0.662505 | tig0028042:+7843 | None:intergenic |
| GTTGGTAAGTACGCACTTGG+GGG | 0.663280 | tig0028042:-7453 | Msa1436930:CDS |
| CAGAGGTGCAGGATCCGAAG+CGG | 0.668942 | tig0028042:+8154 | None:intergenic |
| ATTGAACGAGATTCAAGCTG+GGG | 0.671690 | tig0028042:-8732 | Msa1436930:CDS |
| GACCACGGCCTATAGGAACC+AGG | 0.674009 | tig0028042:+8396 | None:intergenic |
| ACGCCGACCACCAGGCCGTG+AGG | 0.674812 | tig0028042:-8003 | Msa1436930:CDS |
| AGTACCTATTGATGGAAGAG+GGG | 0.675089 | tig0028042:-8525 | Msa1436930:CDS |
| GTGTCGAAGTGAAAGCCCCA+GGG | 0.676731 | tig0028042:-8478 | Msa1436930:CDS |
| TATGCAAACTGGGTTAAAAG+CGG | 0.679525 | tig0028042:-8426 | Msa1436930:CDS |
| ATACAATGTCTCACTCTCAG+AGG | 0.682629 | tig0028042:+8280 | None:intergenic |
| TGGACAGAAACGCTCAACTG+CGG | 0.697417 | tig0028042:-8240 | Msa1436930:CDS |
| ATTGGCACAATATCGCGAAG+TGG | 0.698716 | tig0028042:-7679 | Msa1436930:CDS |
| TCAACAAGAACTTATAATCG+GGG | 0.710856 | tig0028042:-8375 | Msa1436930:CDS |
| GAATTGGTTGAATTTGCCAG+CGG | 0.710976 | tig0028042:-8710 | Msa1436930:CDS |
| TATGGGGCCAGAAATTGCAG+AGG | 0.719347 | tig0028042:+8137 | None:intergenic |
| AAAGCTATGAAACAAGTCTG+CGG | 0.722421 | tig0028042:-7717 | Msa1436930:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGAAAATTAGTGTAAAAGT+TGG | + | tig0028042:7453-7472 | None:intergenic | 20.0% |
| !!! | ACTAGAATTTGTTTTTCAAT+TGG | + | tig0028042:8715-8734 | None:intergenic | 20.0% |
| !! | TTGAAAATTAGTGTAAAAGT+TGG | + | tig0028042:7453-7472 | None:intergenic | 20.0% |
| !!! | ACTAGAATTTGTTTTTCAAT+TGG | + | tig0028042:8715-8734 | None:intergenic | 20.0% |
| !!! | CTTTTACACTAATTTTCAAG+TGG | - | tig0028042:7454-7473 | Msa1436930:CDS | 25.0% |
| !!! | CATTTGCTTTTGGTTTAATA+TGG | + | tig0028042:7948-7967 | None:intergenic | 25.0% |
| !!! | ATTTGTTTTTCAATTGGAAG+TGG | + | tig0028042:8709-8728 | None:intergenic | 25.0% |
| ! | AATAGAATATTGGATTCTGT+TGG | - | tig0028042:8777-8796 | Msa1436930:CDS | 25.0% |
| !!! | CTTTTACACTAATTTTCAAG+TGG | - | tig0028042:7454-7473 | Msa1436930:CDS | 25.0% |
| !!! | CATTTGCTTTTGGTTTAATA+TGG | + | tig0028042:7948-7967 | None:intergenic | 25.0% |
| !!! | ATTTGTTTTTCAATTGGAAG+TGG | + | tig0028042:8709-8728 | None:intergenic | 25.0% |
| ! | AATAGAATATTGGATTCTGT+TGG | - | tig0028042:8777-8796 | Msa1436930:CDS | 25.0% |
| !!! | AATTTTCAAGTGGATGAGAT+CGG | - | tig0028042:7464-7483 | Msa1436930:CDS | 30.0% |
| AATCTTGAGAATGAGAATGT+CGG | - | tig0028042:7593-7612 | Msa1436930:CDS | 30.0% | |
| ATTTACGTTCTATAATCCCT+GGG | + | tig0028042:7802-7821 | None:intergenic | 30.0% | |
| TTATAAGTTCTTGTTGACCA+CGG | + | tig0028042:7883-7902 | None:intergenic | 30.0% | |
| GGTCAACAAGAACTTATAAT+CGG | - | tig0028042:7884-7903 | Msa1436930:CDS | 30.0% | |
| GTCAACAAGAACTTATAATC+GGG | - | tig0028042:7885-7904 | Msa1436930:CDS | 30.0% | |
| TCAACAAGAACTTATAATCG+GGG | - | tig0028042:7886-7905 | Msa1436930:CDS | 30.0% | |
| CTATGATGATCTTAGTAAAC+AGG | - | tig0028042:8204-8223 | Msa1436930:CDS | 30.0% | |
| ! | CGGTAGTTTAAAACTTGAAT+TGG | - | tig0028042:8564-8583 | Msa1436930:CDS | 30.0% |
| CGGGTTCAATAATAGAATAT+TGG | - | tig0028042:8767-8786 | Msa1436930:CDS | 30.0% | |
| !!! | AATTTTCAAGTGGATGAGAT+CGG | - | tig0028042:7464-7483 | Msa1436930:CDS | 30.0% |
| AATCTTGAGAATGAGAATGT+CGG | - | tig0028042:7593-7612 | Msa1436930:CDS | 30.0% | |
| ATTTACGTTCTATAATCCCT+GGG | + | tig0028042:7802-7821 | None:intergenic | 30.0% | |
| TTATAAGTTCTTGTTGACCA+CGG | + | tig0028042:7883-7902 | None:intergenic | 30.0% | |
| GGTCAACAAGAACTTATAAT+CGG | - | tig0028042:7884-7903 | Msa1436930:CDS | 30.0% | |
| GTCAACAAGAACTTATAATC+GGG | - | tig0028042:7885-7904 | Msa1436930:CDS | 30.0% | |
| TCAACAAGAACTTATAATCG+GGG | - | tig0028042:7886-7905 | Msa1436930:CDS | 30.0% | |
| CTATGATGATCTTAGTAAAC+AGG | - | tig0028042:8204-8223 | Msa1436930:CDS | 30.0% | |
| ! | CGGTAGTTTAAAACTTGAAT+TGG | - | tig0028042:8564-8583 | Msa1436930:CDS | 30.0% |
| CGGGTTCAATAATAGAATAT+TGG | - | tig0028042:8767-8786 | Msa1436930:CDS | 30.0% | |
| AATGTCGGAATTGTTGTCTT+TGG | - | tig0028042:7608-7627 | Msa1436930:CDS | 35.0% | |
| AGTGATACCTCTATCAAAGA+AGG | - | tig0028042:7632-7651 | Msa1436930:CDS | 35.0% | |
| AAGATCTCCTTCTTTGATAG+AGG | + | tig0028042:7642-7661 | None:intergenic | 35.0% | |
| TTTACGTTCTATAATCCCTG+GGG | + | tig0028042:7801-7820 | None:intergenic | 35.0% | |
| GATTTACGTTCTATAATCCC+TGG | + | tig0028042:7803-7822 | None:intergenic | 35.0% | |
| TATGCAAACTGGGTTAAAAG+CGG | - | tig0028042:7835-7854 | Msa1436930:CDS | 35.0% | |
| !!! | TAGCTGTTTTTCCAGTTTGT+CGG | + | tig0028042:7913-7932 | None:intergenic | 35.0% |
| ACCAAAAGCAAATGAACTCA+AGG | - | tig0028042:7954-7973 | Msa1436930:CDS | 35.0% | |
| CCAAAAGCAAATGAACTCAA+GGG | - | tig0028042:7955-7974 | Msa1436930:CDS | 35.0% | |
| TATTGTGTCTATGTAGCGAT+TGG | - | tig0028042:8001-8020 | Msa1436930:CDS | 35.0% | |
| GTAAATAGAAAACATCGCCT+GGG | + | tig0028042:8288-8307 | None:intergenic | 35.0% | |
| TGTAAATAGAAAACATCGCC+TGG | + | tig0028042:8289-8308 | None:intergenic | 35.0% | |
| GATAACATTGGTGGGAATAT+AGG | + | tig0028042:8413-8432 | None:intergenic | 35.0% | |
| ! | GTAATGGAGATAACATTGGT+GGG | + | tig0028042:8421-8440 | None:intergenic | 35.0% |
| CACCAATGTTATCTCCATTA+CGG | - | tig0028042:8420-8439 | Msa1436930:CDS | 35.0% | |
| ! | ATCCGTAATGGAGATAACAT+TGG | + | tig0028042:8425-8444 | None:intergenic | 35.0% |
| AATGTTATCTCCATTACGGA+TGG | - | tig0028042:8424-8443 | Msa1436930:CDS | 35.0% | |
| ATTAGACCTGCTATTAACGT+CGG | - | tig0028042:8484-8503 | Msa1436930:CDS | 35.0% | |
| AAAGCTATGAAACAAGTCTG+CGG | - | tig0028042:8544-8563 | Msa1436930:CDS | 35.0% | |
| GTAATTTATGCAGCTGTCAA+TGG | - | tig0028042:8733-8752 | Msa1436930:CDS | 35.0% | |
| !! | TGTCAATGGATTAAACAGGT+CGG | - | tig0028042:8747-8766 | Msa1436930:CDS | 35.0% |
| !! | ATATTGGATTCTGTTGGTTC+TGG | - | tig0028042:8783-8802 | Msa1436930:CDS | 35.0% |
| !! | TATTGGATTCTGTTGGTTCT+GGG | - | tig0028042:8784-8803 | Msa1436930:CDS | 35.0% |
| AATGTCGGAATTGTTGTCTT+TGG | - | tig0028042:7608-7627 | Msa1436930:CDS | 35.0% | |
| AGTGATACCTCTATCAAAGA+AGG | - | tig0028042:7632-7651 | Msa1436930:CDS | 35.0% | |
| AAGATCTCCTTCTTTGATAG+AGG | + | tig0028042:7642-7661 | None:intergenic | 35.0% | |
| TTTACGTTCTATAATCCCTG+GGG | + | tig0028042:7801-7820 | None:intergenic | 35.0% | |
| GATTTACGTTCTATAATCCC+TGG | + | tig0028042:7803-7822 | None:intergenic | 35.0% | |
| TATGCAAACTGGGTTAAAAG+CGG | - | tig0028042:7835-7854 | Msa1436930:CDS | 35.0% | |
| !!! | TAGCTGTTTTTCCAGTTTGT+CGG | + | tig0028042:7913-7932 | None:intergenic | 35.0% |
| ACCAAAAGCAAATGAACTCA+AGG | - | tig0028042:7954-7973 | Msa1436930:CDS | 35.0% | |
| CCAAAAGCAAATGAACTCAA+GGG | - | tig0028042:7955-7974 | Msa1436930:CDS | 35.0% | |
| TATTGTGTCTATGTAGCGAT+TGG | - | tig0028042:8001-8020 | Msa1436930:CDS | 35.0% | |
| GTAAATAGAAAACATCGCCT+GGG | + | tig0028042:8288-8307 | None:intergenic | 35.0% | |
| TGTAAATAGAAAACATCGCC+TGG | + | tig0028042:8289-8308 | None:intergenic | 35.0% | |
| GATAACATTGGTGGGAATAT+AGG | + | tig0028042:8413-8432 | None:intergenic | 35.0% | |
| ! | GTAATGGAGATAACATTGGT+GGG | + | tig0028042:8421-8440 | None:intergenic | 35.0% |
| CACCAATGTTATCTCCATTA+CGG | - | tig0028042:8420-8439 | Msa1436930:CDS | 35.0% | |
| ! | ATCCGTAATGGAGATAACAT+TGG | + | tig0028042:8425-8444 | None:intergenic | 35.0% |
| AATGTTATCTCCATTACGGA+TGG | - | tig0028042:8424-8443 | Msa1436930:CDS | 35.0% | |
| ATTAGACCTGCTATTAACGT+CGG | - | tig0028042:8484-8503 | Msa1436930:CDS | 35.0% | |
| AAAGCTATGAAACAAGTCTG+CGG | - | tig0028042:8544-8563 | Msa1436930:CDS | 35.0% | |
| GTAATTTATGCAGCTGTCAA+TGG | - | tig0028042:8733-8752 | Msa1436930:CDS | 35.0% | |
| !! | TGTCAATGGATTAAACAGGT+CGG | - | tig0028042:8747-8766 | Msa1436930:CDS | 35.0% |
| !! | ATATTGGATTCTGTTGGTTC+TGG | - | tig0028042:8783-8802 | Msa1436930:CDS | 35.0% |
| !! | TATTGGATTCTGTTGGTTCT+GGG | - | tig0028042:8784-8803 | Msa1436930:CDS | 35.0% |
| GATTGAACGAGATTCAAGCT+GGG | - | tig0028042:7528-7547 | Msa1436930:CDS | 40.0% | |
| ATTGAACGAGATTCAAGCTG+GGG | - | tig0028042:7529-7548 | Msa1436930:CDS | 40.0% | |
| GAATTGGTTGAATTTGCCAG+CGG | - | tig0028042:7551-7570 | Msa1436930:CDS | 40.0% | |
| CAAACGTACTGGATCTATTG+TGG | - | tig0028042:7664-7683 | Msa1436930:CDS | 40.0% | |
| ATCTATTGTGGATGTTCCTG+CGG | - | tig0028042:7676-7695 | Msa1436930:CDS | 40.0% | |
| GAGTACCTATTGATGGAAGA+GGG | - | tig0028042:7735-7754 | Msa1436930:CDS | 40.0% | |
| AGTACCTATTGATGGAAGAG+GGG | - | tig0028042:7736-7755 | Msa1436930:CDS | 40.0% | |
| ! | GCTTTTAACCCAGTTTGCAT+AGG | + | tig0028042:7836-7855 | None:intergenic | 40.0% |
| ! | CCCTTGAGTTCATTTGCTTT+TGG | + | tig0028042:7958-7977 | None:intergenic | 40.0% |
| ATACAATGTCTCACTCTCAG+AGG | + | tig0028042:7984-8003 | None:intergenic | 40.0% | |
| !! | AATTTCTGGCCCCATATTCT+GGG | - | tig0028042:8131-8150 | Msa1436930:CDS | 40.0% |
| TGACATTTGTCGATATGCCA+CGG | + | tig0028042:8230-8249 | None:intergenic | 40.0% | |
| TCTTAGAAAGAGCCGCAAAA+CGG | - | tig0028042:8317-8336 | Msa1436930:CDS | 40.0% | |
| !! | TTGTGTTTCAATGACGGGTA+AGG | + | tig0028042:8374-8393 | None:intergenic | 40.0% |
| TCCAGCTTGTGTTTCAATGA+CGG | + | tig0028042:8380-8399 | None:intergenic | 40.0% | |
| ! | CGTAATGGAGATAACATTGG+TGG | + | tig0028042:8422-8441 | None:intergenic | 40.0% |
| ACAGATTTGTCCATCCGTAA+TGG | + | tig0028042:8437-8456 | None:intergenic | 40.0% | |
| TACGGATGGACAAATCTGTT+TGG | - | tig0028042:8438-8457 | Msa1436930:CDS | 40.0% | |
| ! | GAAACAGAGCTCTTTTATCG+CGG | - | tig0028042:8460-8479 | Msa1436930:CDS | 40.0% |
| ACTCAGGCATTACTCAATAG+AGG | - | tig0028042:8643-8662 | Msa1436930:CDS | 40.0% | |
| ! | CATTACTCAATAGAGGTGCA+AGG | - | tig0028042:8650-8669 | Msa1436930:CDS | 40.0% |
| ATTGGAAGTGGTGCATATTG+TGG | + | tig0028042:8697-8716 | None:intergenic | 40.0% | |
| !! | CAGCTGTCAATGGATTAAAC+AGG | - | tig0028042:8743-8762 | Msa1436930:CDS | 40.0% |
| !! | GTCAATGGATTAAACAGGTC+GGG | - | tig0028042:8748-8767 | Msa1436930:CDS | 40.0% |
| !! | AGGAAACGCCTTTTGAGAAA+GGG | + | tig0028042:8836-8855 | None:intergenic | 40.0% |
| GATTGAACGAGATTCAAGCT+GGG | - | tig0028042:7528-7547 | Msa1436930:CDS | 40.0% | |
| ATTGAACGAGATTCAAGCTG+GGG | - | tig0028042:7529-7548 | Msa1436930:CDS | 40.0% | |
| GAATTGGTTGAATTTGCCAG+CGG | - | tig0028042:7551-7570 | Msa1436930:CDS | 40.0% | |
| CAAACGTACTGGATCTATTG+TGG | - | tig0028042:7664-7683 | Msa1436930:CDS | 40.0% | |
| ATCTATTGTGGATGTTCCTG+CGG | - | tig0028042:7676-7695 | Msa1436930:CDS | 40.0% | |
| GAGTACCTATTGATGGAAGA+GGG | - | tig0028042:7735-7754 | Msa1436930:CDS | 40.0% | |
| AGTACCTATTGATGGAAGAG+GGG | - | tig0028042:7736-7755 | Msa1436930:CDS | 40.0% | |
| ! | GCTTTTAACCCAGTTTGCAT+AGG | + | tig0028042:7836-7855 | None:intergenic | 40.0% |
| ! | CCCTTGAGTTCATTTGCTTT+TGG | + | tig0028042:7958-7977 | None:intergenic | 40.0% |
| ATACAATGTCTCACTCTCAG+AGG | + | tig0028042:7984-8003 | None:intergenic | 40.0% | |
| !! | AATTTCTGGCCCCATATTCT+GGG | - | tig0028042:8131-8150 | Msa1436930:CDS | 40.0% |
| TGACATTTGTCGATATGCCA+CGG | + | tig0028042:8230-8249 | None:intergenic | 40.0% | |
| TCTTAGAAAGAGCCGCAAAA+CGG | - | tig0028042:8317-8336 | Msa1436930:CDS | 40.0% | |
| !! | TTGTGTTTCAATGACGGGTA+AGG | + | tig0028042:8374-8393 | None:intergenic | 40.0% |
| TCCAGCTTGTGTTTCAATGA+CGG | + | tig0028042:8380-8399 | None:intergenic | 40.0% | |
| ! | CGTAATGGAGATAACATTGG+TGG | + | tig0028042:8422-8441 | None:intergenic | 40.0% |
| ACAGATTTGTCCATCCGTAA+TGG | + | tig0028042:8437-8456 | None:intergenic | 40.0% | |
| TACGGATGGACAAATCTGTT+TGG | - | tig0028042:8438-8457 | Msa1436930:CDS | 40.0% | |
| ! | GAAACAGAGCTCTTTTATCG+CGG | - | tig0028042:8460-8479 | Msa1436930:CDS | 40.0% |
| ACTCAGGCATTACTCAATAG+AGG | - | tig0028042:8643-8662 | Msa1436930:CDS | 40.0% | |
| ! | CATTACTCAATAGAGGTGCA+AGG | - | tig0028042:8650-8669 | Msa1436930:CDS | 40.0% |
| ATTGGAAGTGGTGCATATTG+TGG | + | tig0028042:8697-8716 | None:intergenic | 40.0% | |
| !! | CAGCTGTCAATGGATTAAAC+AGG | - | tig0028042:8743-8762 | Msa1436930:CDS | 40.0% |
| !! | GTCAATGGATTAAACAGGTC+GGG | - | tig0028042:8748-8767 | Msa1436930:CDS | 40.0% |
| !! | AGGAAACGCCTTTTGAGAAA+GGG | + | tig0028042:8836-8855 | None:intergenic | 40.0% |
| GGAATTCTCTGTAAGAGCTG+CGG | - | tig0028042:7397-7416 | Msa1436930:CDS | 45.0% | |
| GATGGGATTGCACGTGTTTA+TGG | - | tig0028042:7506-7525 | Msa1436930:CDS | 45.0% | |
| GGATTGAACGAGATTCAAGC+TGG | - | tig0028042:7527-7546 | Msa1436930:CDS | 45.0% | |
| GGAGATCTTGTCAAACGTAC+TGG | - | tig0028042:7653-7672 | Msa1436930:CDS | 45.0% | |
| TCTATTGTGGATGTTCCTGC+GGG | - | tig0028042:7677-7696 | Msa1436930:CDS | 45.0% | |
| ! | GGAGTACCTATTGATGGAAG+AGG | - | tig0028042:7734-7753 | Msa1436930:CDS | 45.0% |
| GTTAAAAGCGGTAGATAGCC+TGG | - | tig0028042:7847-7866 | Msa1436930:CDS | 45.0% | |
| GTAGATAGCCTGGTTCCTAT+AGG | - | tig0028042:7857-7876 | Msa1436930:CDS | 45.0% | |
| !! | CAATTTCTGGCCCCATATTC+TGG | - | tig0028042:8130-8149 | Msa1436930:CDS | 45.0% |
| GGGGAATATTTCCGCGATAA+TGG | - | tig0028042:8163-8182 | Msa1436930:CDS | 45.0% | |
| ATGCGTGCATTCCATTATCG+CGG | + | tig0028042:8177-8196 | None:intergenic | 45.0% | |
| TGATCTTAGTAAACAGGCCG+TGG | - | tig0028042:8210-8229 | Msa1436930:CDS | 45.0% | |
| ! | TTGCGGCTCTTTCTAAGAGA+CGG | + | tig0028042:8315-8334 | None:intergenic | 45.0% |
| !! | TGTTTCAATGACGGGTAAGG+CGG | + | tig0028042:8371-8390 | None:intergenic | 45.0% |
| CCAGCTTGTGTTTCAATGAC+GGG | + | tig0028042:8379-8398 | None:intergenic | 45.0% | |
| AACACAAGCTGGAGACGTAT+CGG | - | tig0028042:8387-8406 | Msa1436930:CDS | 45.0% | |
| GATAAGCCGACGTTAATAGC+AGG | + | tig0028042:8493-8512 | None:intergenic | 45.0% | |
| ATTGGCACAATATCGCGAAG+TGG | - | tig0028042:8582-8601 | Msa1436930:CDS | 45.0% | |
| TGAGCCAAATTGAGCAAAGG+CGG | + | tig0028042:8608-8627 | None:intergenic | 45.0% | |
| GTCTGAGCCAAATTGAGCAA+AGG | + | tig0028042:8611-8630 | None:intergenic | 45.0% | |
| !! | CAGGAAACGCCTTTTGAGAA+AGG | + | tig0028042:8837-8856 | None:intergenic | 45.0% |
| !! | CTTTCTCAAAAGGCGTTTCC+TGG | - | tig0028042:8835-8854 | Msa1436930:CDS | 45.0% |
| GGAATTCTCTGTAAGAGCTG+CGG | - | tig0028042:7397-7416 | Msa1436930:CDS | 45.0% | |
| GATGGGATTGCACGTGTTTA+TGG | - | tig0028042:7506-7525 | Msa1436930:CDS | 45.0% | |
| GGATTGAACGAGATTCAAGC+TGG | - | tig0028042:7527-7546 | Msa1436930:CDS | 45.0% | |
| GGAGATCTTGTCAAACGTAC+TGG | - | tig0028042:7653-7672 | Msa1436930:CDS | 45.0% | |
| TCTATTGTGGATGTTCCTGC+GGG | - | tig0028042:7677-7696 | Msa1436930:CDS | 45.0% | |
| ! | GGAGTACCTATTGATGGAAG+AGG | - | tig0028042:7734-7753 | Msa1436930:CDS | 45.0% |
| GTTAAAAGCGGTAGATAGCC+TGG | - | tig0028042:7847-7866 | Msa1436930:CDS | 45.0% | |
| GTAGATAGCCTGGTTCCTAT+AGG | - | tig0028042:7857-7876 | Msa1436930:CDS | 45.0% | |
| !! | CAATTTCTGGCCCCATATTC+TGG | - | tig0028042:8130-8149 | Msa1436930:CDS | 45.0% |
| GGGGAATATTTCCGCGATAA+TGG | - | tig0028042:8163-8182 | Msa1436930:CDS | 45.0% | |
| ATGCGTGCATTCCATTATCG+CGG | + | tig0028042:8177-8196 | None:intergenic | 45.0% | |
| TGATCTTAGTAAACAGGCCG+TGG | - | tig0028042:8210-8229 | Msa1436930:CDS | 45.0% | |
| ! | TTGCGGCTCTTTCTAAGAGA+CGG | + | tig0028042:8315-8334 | None:intergenic | 45.0% |
| !! | TGTTTCAATGACGGGTAAGG+CGG | + | tig0028042:8371-8390 | None:intergenic | 45.0% |
| CCAGCTTGTGTTTCAATGAC+GGG | + | tig0028042:8379-8398 | None:intergenic | 45.0% | |
| AACACAAGCTGGAGACGTAT+CGG | - | tig0028042:8387-8406 | Msa1436930:CDS | 45.0% | |
| GATAAGCCGACGTTAATAGC+AGG | + | tig0028042:8493-8512 | None:intergenic | 45.0% | |
| ATTGGCACAATATCGCGAAG+TGG | - | tig0028042:8582-8601 | Msa1436930:CDS | 45.0% | |
| TGAGCCAAATTGAGCAAAGG+CGG | + | tig0028042:8608-8627 | None:intergenic | 45.0% | |
| GTCTGAGCCAAATTGAGCAA+AGG | + | tig0028042:8611-8630 | None:intergenic | 45.0% | |
| !! | CAGGAAACGCCTTTTGAGAA+AGG | + | tig0028042:8837-8856 | None:intergenic | 45.0% |
| !! | CTTTCTCAAAAGGCGTTTCC+TGG | - | tig0028042:8835-8854 | Msa1436930:CDS | 45.0% |
| GAGTGGTCTCAGTTGGAGAT+GGG | - | tig0028042:7489-7508 | Msa1436930:CDS | 50.0% | |
| CGAGATTCAAGCTGGGGAAT+TGG | - | tig0028042:7535-7554 | Msa1436930:CDS | 50.0% | |
| GAATTTGCCAGCGGTGTGAA+AGG | - | tig0028042:7560-7579 | Msa1436930:CDS | 50.0% | |
| !! | GCGTTGGGAGTACCTATTGA+TGG | - | tig0028042:7728-7747 | Msa1436930:CDS | 50.0% |
| AGAGCCCCTCTTCCATCAAT+AGG | + | tig0028042:7743-7762 | None:intergenic | 50.0% | |
| TGCACGAGCCTATGCAAACT+GGG | - | tig0028042:7825-7844 | Msa1436930:CDS | 50.0% | |
| TCTTGTTGACCACGGCCTAT+AGG | + | tig0028042:7875-7894 | None:intergenic | 50.0% | |
| ATAATCGGGGACCGACAAAC+TGG | - | tig0028042:7899-7918 | Msa1436930:CDS | 50.0% | |
| CAATGTCTCACTCTCAGAGG+TGG | + | tig0028042:7981-8000 | None:intergenic | 50.0% | |
| TGGACAGAAACGCTCAACTG+CGG | - | tig0028042:8021-8040 | Msa1436930:CDS | 50.0% | |
| TCCTGCACCTCTGCAATTTC+TGG | - | tig0028042:8117-8136 | Msa1436930:CDS | 50.0% | |
| TATGGGGCCAGAAATTGCAG+AGG | + | tig0028042:8127-8146 | None:intergenic | 50.0% | |
| CATGGCACACCCAGAATATG+GGG | + | tig0028042:8143-8162 | None:intergenic | 50.0% | |
| CCATGGCACACCCAGAATAT+GGG | + | tig0028042:8144-8163 | None:intergenic | 50.0% | |
| CCATATTCTGGGTGTGCCAT+GGG | - | tig0028042:8142-8161 | Msa1436930:CDS | 50.0% | |
| CATATTCTGGGTGTGCCATG+GGG | - | tig0028042:8143-8162 | Msa1436930:CDS | 50.0% | |
| ATATTCTGGGTGTGCCATGG+GGG | - | tig0028042:8144-8163 | Msa1436930:CDS | 50.0% | |
| ATCGCGGAAATATTCCCCCA+TGG | + | tig0028042:8161-8180 | None:intergenic | 50.0% | |
| TTATTGTTACGCCGACCACC+AGG | - | tig0028042:8250-8269 | Msa1436930:CDS | 50.0% | |
| ! | TGCGGCTCTTTCTAAGAGAC+GGG | + | tig0028042:8314-8333 | None:intergenic | 50.0% |
| ! | TGTCTGGTCAGACCGTTTTG+CGG | + | tig0028042:8332-8351 | None:intergenic | 50.0% |
| CCCGTCATTGAAACACAAGC+TGG | - | tig0028042:8376-8395 | Msa1436930:CDS | 50.0% | |
| !! | ATTCTGTTGGTTCTGGGCGT+TGG | - | tig0028042:8790-8809 | Msa1436930:CDS | 50.0% |
| ! | GCGTTGGTAAGTACGCACTT+GGG | - | tig0028042:8806-8825 | Msa1436930:CDS | 50.0% |
| ! | CGTTGGTAAGTACGCACTTG+GGG | - | tig0028042:8807-8826 | Msa1436930:CDS | 50.0% |
| ! | GTTGGTAAGTACGCACTTGG+GGG | - | tig0028042:8808-8827 | Msa1436930:CDS | 50.0% |
| GAGTGGTCTCAGTTGGAGAT+GGG | - | tig0028042:7489-7508 | Msa1436930:CDS | 50.0% | |
| CGAGATTCAAGCTGGGGAAT+TGG | - | tig0028042:7535-7554 | Msa1436930:CDS | 50.0% | |
| GAATTTGCCAGCGGTGTGAA+AGG | - | tig0028042:7560-7579 | Msa1436930:CDS | 50.0% | |
| !! | GCGTTGGGAGTACCTATTGA+TGG | - | tig0028042:7728-7747 | Msa1436930:CDS | 50.0% |
| AGAGCCCCTCTTCCATCAAT+AGG | + | tig0028042:7743-7762 | None:intergenic | 50.0% | |
| TGCACGAGCCTATGCAAACT+GGG | - | tig0028042:7825-7844 | Msa1436930:CDS | 50.0% | |
| TCTTGTTGACCACGGCCTAT+AGG | + | tig0028042:7875-7894 | None:intergenic | 50.0% | |
| ATAATCGGGGACCGACAAAC+TGG | - | tig0028042:7899-7918 | Msa1436930:CDS | 50.0% | |
| CAATGTCTCACTCTCAGAGG+TGG | + | tig0028042:7981-8000 | None:intergenic | 50.0% | |
| TGGACAGAAACGCTCAACTG+CGG | - | tig0028042:8021-8040 | Msa1436930:CDS | 50.0% | |
| TCCTGCACCTCTGCAATTTC+TGG | - | tig0028042:8117-8136 | Msa1436930:CDS | 50.0% | |
| TATGGGGCCAGAAATTGCAG+AGG | + | tig0028042:8127-8146 | None:intergenic | 50.0% | |
| CATGGCACACCCAGAATATG+GGG | + | tig0028042:8143-8162 | None:intergenic | 50.0% | |
| CCATGGCACACCCAGAATAT+GGG | + | tig0028042:8144-8163 | None:intergenic | 50.0% | |
| CCATATTCTGGGTGTGCCAT+GGG | - | tig0028042:8142-8161 | Msa1436930:CDS | 50.0% | |
| CATATTCTGGGTGTGCCATG+GGG | - | tig0028042:8143-8162 | Msa1436930:CDS | 50.0% | |
| ATATTCTGGGTGTGCCATGG+GGG | - | tig0028042:8144-8163 | Msa1436930:CDS | 50.0% | |
| ATCGCGGAAATATTCCCCCA+TGG | + | tig0028042:8161-8180 | None:intergenic | 50.0% | |
| TTATTGTTACGCCGACCACC+AGG | - | tig0028042:8250-8269 | Msa1436930:CDS | 50.0% | |
| ! | TGCGGCTCTTTCTAAGAGAC+GGG | + | tig0028042:8314-8333 | None:intergenic | 50.0% |
| ! | TGTCTGGTCAGACCGTTTTG+CGG | + | tig0028042:8332-8351 | None:intergenic | 50.0% |
| CCCGTCATTGAAACACAAGC+TGG | - | tig0028042:8376-8395 | Msa1436930:CDS | 50.0% | |
| !! | ATTCTGTTGGTTCTGGGCGT+TGG | - | tig0028042:8790-8809 | Msa1436930:CDS | 50.0% |
| ! | GCGTTGGTAAGTACGCACTT+GGG | - | tig0028042:8806-8825 | Msa1436930:CDS | 50.0% |
| ! | CGTTGGTAAGTACGCACTTG+GGG | - | tig0028042:8807-8826 | Msa1436930:CDS | 50.0% |
| ! | GTTGGTAAGTACGCACTTGG+GGG | - | tig0028042:8808-8827 | Msa1436930:CDS | 50.0% |
| AGTGGATGAGATCGGTCGAG+TGG | - | tig0028042:7472-7491 | Msa1436930:CDS | 55.0% | |
| ATCGGTCGAGTGGTCTCAGT+TGG | - | tig0028042:7482-7501 | Msa1436930:CDS | 55.0% | |
| CGAGTGGTCTCAGTTGGAGA+TGG | - | tig0028042:7488-7507 | Msa1436930:CDS | 55.0% | |
| CGCTATTCCTTTCACACCGC+TGG | + | tig0028042:7570-7589 | None:intergenic | 55.0% | |
| TGTGGATGTTCCTGCGGGAA+AGG | - | tig0028042:7682-7701 | Msa1436930:CDS | 55.0% | |
| CTGCGGGAAAGGCTATGCTA+GGG | - | tig0028042:7693-7712 | Msa1436930:CDS | 55.0% | |
| AAAGGCTATGCTAGGGCGTG+TGG | - | tig0028042:7700-7719 | Msa1436930:CDS | 55.0% | |
| GTGTCGAAGTGAAAGCCCCA+GGG | - | tig0028042:7783-7802 | Msa1436930:CDS | 55.0% | |
| GTGCACGAGCCTATGCAAAC+TGG | - | tig0028042:7824-7843 | Msa1436930:CDS | 55.0% | |
| AGCGGTGGCTGCTACAAGAA+TGG | + | tig0028042:8092-8111 | None:intergenic | 55.0% | |
| TCTTGTAGCAGCCACCGCTT+CGG | - | tig0028042:8093-8112 | Msa1436930:CDS | 55.0% | |
| ! | GCCAGAAATTGCAGAGGTGC+AGG | + | tig0028042:8121-8140 | None:intergenic | 55.0% |
| CCCATATTCTGGGTGTGCCA+TGG | - | tig0028042:8141-8160 | Msa1436930:CDS | 55.0% | |
| CCCATGGCACACCCAGAATA+TGG | + | tig0028042:8145-8164 | None:intergenic | 55.0% | |
| GCAAAACGGTCTGACCAGAC+AGG | - | tig0028042:8331-8350 | Msa1436930:CDS | 55.0% | |
| TCAAACTACCTGCGCCTGTC+TGG | + | tig0028042:8348-8367 | None:intergenic | 55.0% | |
| GGCTTATCTGTCAGTCGCGT+CGG | - | tig0028042:8505-8524 | Msa1436930:CDS | 55.0% | |
| GCTTATCTGTCAGTCGCGTC+GGG | - | tig0028042:8506-8525 | Msa1436930:CDS | 55.0% | |
| GTGGCCGCCTTTGCTCAATT+TGG | - | tig0028042:8601-8620 | Msa1436930:CDS | 55.0% | |
| AGACCTTGATGCTGCGACTC+AGG | - | tig0028042:8627-8646 | Msa1436930:CDS | 55.0% | |
| ATGCCTGAGTCGCAGCATCA+AGG | + | tig0028042:8633-8652 | None:intergenic | 55.0% | |
| !! | GGCGTTGGTAAGTACGCACT+TGG | - | tig0028042:8805-8824 | Msa1436930:CDS | 55.0% |
| CAAGGCTCGAGAACTTGTCC+AGG | + | tig0028042:8856-8875 | None:intergenic | 55.0% | |
| CTGGACAAGTTCTCGAGCCT+TGG | - | tig0028042:8854-8873 | Msa1436930:CDS | 55.0% | |
| AGTGGATGAGATCGGTCGAG+TGG | - | tig0028042:7472-7491 | Msa1436930:CDS | 55.0% | |
| ATCGGTCGAGTGGTCTCAGT+TGG | - | tig0028042:7482-7501 | Msa1436930:CDS | 55.0% | |
| CGAGTGGTCTCAGTTGGAGA+TGG | - | tig0028042:7488-7507 | Msa1436930:CDS | 55.0% | |
| CGCTATTCCTTTCACACCGC+TGG | + | tig0028042:7570-7589 | None:intergenic | 55.0% | |
| TGTGGATGTTCCTGCGGGAA+AGG | - | tig0028042:7682-7701 | Msa1436930:CDS | 55.0% | |
| CTGCGGGAAAGGCTATGCTA+GGG | - | tig0028042:7693-7712 | Msa1436930:CDS | 55.0% | |
| AAAGGCTATGCTAGGGCGTG+TGG | - | tig0028042:7700-7719 | Msa1436930:CDS | 55.0% | |
| GTGTCGAAGTGAAAGCCCCA+GGG | - | tig0028042:7783-7802 | Msa1436930:CDS | 55.0% | |
| GTGCACGAGCCTATGCAAAC+TGG | - | tig0028042:7824-7843 | Msa1436930:CDS | 55.0% | |
| AGCGGTGGCTGCTACAAGAA+TGG | + | tig0028042:8092-8111 | None:intergenic | 55.0% | |
| TCTTGTAGCAGCCACCGCTT+CGG | - | tig0028042:8093-8112 | Msa1436930:CDS | 55.0% | |
| ! | GCCAGAAATTGCAGAGGTGC+AGG | + | tig0028042:8121-8140 | None:intergenic | 55.0% |
| CCCATATTCTGGGTGTGCCA+TGG | - | tig0028042:8141-8160 | Msa1436930:CDS | 55.0% | |
| CCCATGGCACACCCAGAATA+TGG | + | tig0028042:8145-8164 | None:intergenic | 55.0% | |
| GCAAAACGGTCTGACCAGAC+AGG | - | tig0028042:8331-8350 | Msa1436930:CDS | 55.0% | |
| TCAAACTACCTGCGCCTGTC+TGG | + | tig0028042:8348-8367 | None:intergenic | 55.0% | |
| GGCTTATCTGTCAGTCGCGT+CGG | - | tig0028042:8505-8524 | Msa1436930:CDS | 55.0% | |
| GCTTATCTGTCAGTCGCGTC+GGG | - | tig0028042:8506-8525 | Msa1436930:CDS | 55.0% | |
| GTGGCCGCCTTTGCTCAATT+TGG | - | tig0028042:8601-8620 | Msa1436930:CDS | 55.0% | |
| AGACCTTGATGCTGCGACTC+AGG | - | tig0028042:8627-8646 | Msa1436930:CDS | 55.0% | |
| ATGCCTGAGTCGCAGCATCA+AGG | + | tig0028042:8633-8652 | None:intergenic | 55.0% | |
| !! | GGCGTTGGTAAGTACGCACT+TGG | - | tig0028042:8805-8824 | Msa1436930:CDS | 55.0% |
| CAAGGCTCGAGAACTTGTCC+AGG | + | tig0028042:8856-8875 | None:intergenic | 55.0% | |
| CTGGACAAGTTCTCGAGCCT+TGG | - | tig0028042:8854-8873 | Msa1436930:CDS | 55.0% | |
| CCTAGCATAGCCTTTCCCGC+AGG | + | tig0028042:7695-7714 | None:intergenic | 60.0% | |
| CCTGCGGGAAAGGCTATGCT+AGG | - | tig0028042:7692-7711 | Msa1436930:CDS | 60.0% | |
| CGTGTCGAAGTGAAAGCCCC+AGG | - | tig0028042:7782-7801 | Msa1436930:CDS | 60.0% | |
| AGCCTGGTTCCTATAGGCCG+TGG | - | tig0028042:7863-7882 | Msa1436930:CDS | 60.0% | |
| GACCACGGCCTATAGGAACC+AGG | + | tig0028042:7868-7887 | None:intergenic | 60.0% | |
| ! | CAGAGGTGCAGGATCCGAAG+CGG | + | tig0028042:8110-8129 | None:intergenic | 60.0% |
| CATCGCCTGGGAAAGCCTCA+CGG | + | tig0028042:8276-8295 | None:intergenic | 60.0% | |
| !! | TGGGGGCGCCCTTTCTCAAA+AGG | - | tig0028042:8825-8844 | Msa1436930:CDS | 60.0% |
| CCTAGCATAGCCTTTCCCGC+AGG | + | tig0028042:7695-7714 | None:intergenic | 60.0% | |
| CCTGCGGGAAAGGCTATGCT+AGG | - | tig0028042:7692-7711 | Msa1436930:CDS | 60.0% | |
| CGTGTCGAAGTGAAAGCCCC+AGG | - | tig0028042:7782-7801 | Msa1436930:CDS | 60.0% | |
| AGCCTGGTTCCTATAGGCCG+TGG | - | tig0028042:7863-7882 | Msa1436930:CDS | 60.0% | |
| GACCACGGCCTATAGGAACC+AGG | + | tig0028042:7868-7887 | None:intergenic | 60.0% | |
| ! | CAGAGGTGCAGGATCCGAAG+CGG | + | tig0028042:8110-8129 | None:intergenic | 60.0% |
| CATCGCCTGGGAAAGCCTCA+CGG | + | tig0028042:8276-8295 | None:intergenic | 60.0% | |
| !! | TGGGGGCGCCCTTTCTCAAA+AGG | - | tig0028042:8825-8844 | Msa1436930:CDS | 60.0% |
| AGGTGCAGGATCCGAAGCGG+TGG | + | tig0028042:8107-8126 | None:intergenic | 65.0% | |
| AAGCCTCACGGCCTGGTGGT+CGG | + | tig0028042:8264-8283 | None:intergenic | 65.0% | |
| AGGTGCAGGATCCGAAGCGG+TGG | + | tig0028042:8107-8126 | None:intergenic | 65.0% | |
| AAGCCTCACGGCCTGGTGGT+CGG | + | tig0028042:8264-8283 | None:intergenic | 65.0% | |
| AGGGCGTGTGGTCGACGCGT+TGG | - | tig0028042:7712-7731 | Msa1436930:CDS | 70.0% | |
| GGGCGTGTGGTCGACGCGTT+GGG | - | tig0028042:7713-7732 | Msa1436930:CDS | 70.0% | |
| GGGAAAGCCTCACGGCCTGG+TGG | + | tig0028042:8268-8287 | None:intergenic | 70.0% | |
| CCTGGGAAAGCCTCACGGCC+TGG | + | tig0028042:8271-8290 | None:intergenic | 70.0% | |
| CCAGGCCGTGAGGCTTTCCC+AGG | - | tig0028042:8268-8287 | Msa1436930:CDS | 70.0% | |
| CGGTCTGACCAGACAGGCGC+AGG | - | tig0028042:8337-8356 | Msa1436930:CDS | 70.0% | |
| AGGGCGTGTGGTCGACGCGT+TGG | - | tig0028042:7712-7731 | Msa1436930:CDS | 70.0% | |
| GGGCGTGTGGTCGACGCGTT+GGG | - | tig0028042:7713-7732 | Msa1436930:CDS | 70.0% | |
| GGGAAAGCCTCACGGCCTGG+TGG | + | tig0028042:8268-8287 | None:intergenic | 70.0% | |
| CCTGGGAAAGCCTCACGGCC+TGG | + | tig0028042:8271-8290 | None:intergenic | 70.0% | |
| CCAGGCCGTGAGGCTTTCCC+AGG | - | tig0028042:8268-8287 | Msa1436930:CDS | 70.0% | |
| CGGTCTGACCAGACAGGCGC+AGG | - | tig0028042:8337-8356 | Msa1436930:CDS | 70.0% | |
| ACGCCGACCACCAGGCCGTG+AGG | - | tig0028042:8258-8277 | Msa1436930:CDS | 75.0% | |
| ACGCCGACCACCAGGCCGTG+AGG | - | tig0028042:8258-8277 | Msa1436930:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0028042 | gene | 7395 | 8888 | 7395 | ID=Msa1436930;Name=Msa1436930 |
| tig0028042 | mRNA | 7395 | 8888 | 7395 | ID=Msa1436930-mRNA-1;Parent=Msa1436930;Name=Msa1436930-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|-1|0|1|-1|1|1|0|497 |
| tig0028042 | exon | 7395 | 8888 | 7395 | ID=Msa1436930-mRNA-1:exon:10447;Parent=Msa1436930-mRNA-1 |
| tig0028042 | CDS | 7395 | 8888 | 7395 | ID=Msa1436930-mRNA-1:cds;Parent=Msa1436930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
