AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0902770

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0902770 MtrunA17_Chr4g0023831 27.684 354 170 6 8 308 734 1054 1.50e-24 107
Msa0902770 MtrunA17_Chr2g0296321 78.689 61 13 0 381 441 195 255 5.53e-24 100
Msa0902770 MtrunA17_Chr3g0085761 25.641 351 170 6 38 308 2 341 7.05e-22 98.6
Msa0902770 MtrunA17_Chr5g0423411 29.412 153 83 2 8 135 4 156 1.97e-13 72.0
Msa0902770 MtrunA17_Chr2g0323581 36.364 121 49 1 90 182 1 121 6.63e-13 65.5
Msa0902770 MtrunA17_Chr8g0359381 30.638 235 111 2 8 190 76 310 2.45e-12 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 139 sgRNAs with CRISPR-Local

Find 380 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGAGATTGTGTCTTATTTC+AGG 0.172919 6_1:+102531313 Msa0902770:CDS
GCGAAGGCACCTTCGGAATT+AGG 0.189226 6_1:-102531620 None:intergenic
CATCTTCTTCTTTGAGATCT+AGG 0.237136 6_1:-102531057 None:intergenic
TCAGGCAGTCTTGCTCTAAA+TGG 0.274522 6_1:+102531166 Msa0902770:intron
GGAACTCTATCTTGGCCATT+AGG 0.313846 6_1:+102531250 Msa0902770:CDS
ACAATCTCCGCATGGATCTC+TGG 0.330038 6_1:-102531300 None:intergenic
AAGGAAGGCGATGCAAATTC+TGG 0.333244 6_1:+102531192 Msa0902770:CDS
GATCACTTTCTTCTTTCTGA+TGG 0.337743 6_1:+102530721 Msa0902770:CDS
CACCAACGGCACGTGCCTCT+CGG 0.348983 6_1:+102533561 Msa0902770:CDS
ATGGGTGGTGGGACCTGTGT+GGG 0.350692 6_1:+102530740 Msa0902770:CDS
TTCCATCTTCGTGCAGCGTA+TGG 0.354984 6_1:+102530624 Msa0902770:CDS
TTCTTCTTTCTGATGGGTGG+TGG 0.382991 6_1:+102530728 Msa0902770:CDS
ATCACTTTCTTCTTTCTGAT+GGG 0.384897 6_1:+102530722 Msa0902770:CDS
TCAACGGTTCCTCTCGTACT+AGG 0.387341 6_1:+102533740 Msa0902770:CDS
CGAAGGCACCTTCGGAATTA+GGG 0.392287 6_1:-102531619 None:intergenic
GTAAGGCGGATGAGCCTTAC+GGG 0.394694 6_1:-102533532 None:intergenic
CTGCTCGTCGCTCCACCATT+AGG 0.401503 6_1:-102530694 None:intergenic
CTAGTCATGTGGATGTGCTT+AGG 0.409368 6_1:+102531032 Msa0902770:CDS
CAAATAAGTCGAGGCGTTGT+CGG 0.409374 6_1:-102533010 None:intergenic
GTGTGGGGAGGCTGCTCAGT+GGG 0.409929 6_1:+102530756 Msa0902770:CDS
TGGGTGGTGGGACCTGTGTG+GGG 0.416132 6_1:+102530741 Msa0902770:CDS
TAGCCCGGATTCTGACTTAG+AGG 0.418777 6_1:+102533641 Msa0902770:CDS
GTGGATGGCGGTAAGACTTT+CGG 0.420430 6_1:+102530934 Msa0902770:CDS
GTGGTGGGACCTGTGTGGGG+AGG 0.420444 6_1:+102530744 Msa0902770:CDS
GGGATGTGGTGGCGCGGAGC+TGG 0.424921 6_1:+102530891 Msa0902770:CDS
CCACCTGTTACCTACCCTAA+TGG 0.428317 6_1:-102531265 None:intergenic
GCACGGTAGCTTCGCGCCAC+TGG 0.430249 6_1:+102533683 Msa0902770:CDS
GCTTATTGCCCTACCCTGGA+TGG 0.439094 6_1:+102531357 Msa0902770:CDS
TCCATCTTCGTGCAGCGTAT+GGG 0.441718 6_1:+102530625 Msa0902770:CDS
GCACAATTGGTCATCGCGCT+TGG 0.443836 6_1:-102533714 None:intergenic
CTTCTTCACTTTCCTCTCCT+AGG 0.444004 6_1:+102530649 Msa0902770:CDS
AACGCCTCTAAGTCAGAATC+CGG 0.445011 6_1:-102533645 None:intergenic
TCTTCTTTCTGATGGGTGGT+GGG 0.449776 6_1:+102530729 Msa0902770:CDS
GGAGATTGTGTCTTATTTCA+GGG 0.450816 6_1:+102531314 Msa0902770:CDS
GAACCGTTGATTCGCACAAT+TGG 0.450837 6_1:-102533727 None:intergenic
GTCTTGCTCTAAATGGCTTA+AGG 0.452712 6_1:+102531173 Msa0902770:CDS
CGAGAGGCACGTGCCGTTGG+TGG 0.455503 6_1:-102533560 None:intergenic
TTTATGACTTCGAAACCCTT+TGG 0.458445 6_1:+102533332 Msa0902770:CDS
TGGCCATTAGGGTAGGTAAC+AGG 0.462403 6_1:+102531262 Msa0902770:CDS
CTGGTACCGTTCTAGACCTA+TGG 0.465017 6_1:+102530910 Msa0902770:CDS
TTCACGTGGAGTCAACCTAA+TGG 0.466485 6_1:+102530679 Msa0902770:CDS
GAACTCTATCTTGGCCATTA+GGG 0.468659 6_1:+102531251 Msa0902770:CDS
CGTAAGGCGGATGAGCCTTA+CGG 0.473874 6_1:-102533533 None:intergenic
CAATCTCCGCATGGATCTCT+GGG 0.482382 6_1:-102531299 None:intergenic
TCTAAAAGCGTGGCATATGC+AGG 0.482484 6_1:+102530982 Msa0902770:CDS
TCTCGTCTGAGGAAATCAAA+AGG 0.485228 6_1:+102531433 Msa0902770:CDS
CACTTTAAGAGCCTCAAGCT+TGG 0.486753 6_1:-102530957 None:intergenic
CTTATTGCCCTACCCTGGAT+GGG 0.487504 6_1:+102531358 Msa0902770:CDS
TCGCTTGCCGACCAGCAGTA+GGG 0.488646 6_1:-102533595 None:intergenic
TGCCGTTGGTGGACCTCGTA+AGG 0.488919 6_1:-102533549 None:intergenic
CACACGCATCGCTTCTAGCC+CGG 0.492473 6_1:+102533626 Msa0902770:CDS
ACCCATACGCTGCACGAAGA+TGG 0.493575 6_1:-102530626 None:intergenic
ACTTTCTTCTTTCTGATGGG+TGG 0.495455 6_1:+102530725 Msa0902770:CDS
GAGGTGTAGGAACTCTATCT+TGG 0.496864 6_1:+102531242 Msa0902770:CDS
TCTCTTCCTTGTCTCTCTGA+GGG 0.501280 6_1:+102531384 Msa0902770:CDS
TTCACTTTCCTCTCCTAGGT+AGG 0.504879 6_1:+102530653 Msa0902770:CDS
CTAATGGTGGAGCGACGAGC+AGG 0.508940 6_1:+102530695 Msa0902770:CDS
GATGGGTGGTGGGACCTGTG+TGG 0.513440 6_1:+102530739 Msa0902770:CDS
TGACCAATTGTGCGAATCAA+CGG 0.514654 6_1:+102533724 Msa0902770:CDS
AAGGAAGAGATACCCCATCC+AGG 0.516265 6_1:-102531371 None:intergenic
CTCGTCTGAGGAAATCAAAA+GGG 0.516611 6_1:+102531434 Msa0902770:CDS
AGCGAGGTCCTTCCTCGCTA+TGG 0.518384 6_1:+102533290 Msa0902770:intron
TTCGCTTGCCGACCAGCAGT+AGG 0.520364 6_1:-102533596 None:intergenic
ATCTCTTCCTTGTCTCTCTG+AGG 0.523045 6_1:+102531383 Msa0902770:CDS
CATCCACATGACTAGAAATC+CGG 0.529975 6_1:-102531024 None:intergenic
CCAACGGCACGTGCCTCTCG+GGG 0.532301 6_1:+102533563 Msa0902770:CDS
CTAGATCTCAAAGAAGAAGA+TGG 0.533909 6_1:+102531058 Msa0902770:CDS
GGCGCGAAGCTACCGTGCGT+TGG 0.534897 6_1:-102533678 None:intergenic
ATCTGAGAACGATAGGGCTA+TGG 0.541467 6_1:-102530801 None:intergenic
CGCTTGCCGACCAGCAGTAG+GGG 0.547913 6_1:-102533594 None:intergenic
TTTGATTTCCTCAGACGAGA+AGG 0.551053 6_1:-102531430 None:intergenic
TGTCGTCCGTGCACAACACT+TGG 0.552063 6_1:+102533146 Msa0902770:CDS
GAGATACCCCATCCAGGGTA+GGG 0.552108 6_1:-102531365 None:intergenic
CTTTGGCATGCGTGTGTGAA+AGG 0.554659 6_1:+102533349 Msa0902770:CDS
TTTCATTACCCTAATTCCGA+AGG 0.555278 6_1:+102531611 Msa0902770:CDS
CGTCGCTTATTGCCCTACCC+TGG 0.555402 6_1:+102531353 Msa0902770:CDS
CTATGGCGTAGGACATGCCT+TGG 0.555593 6_1:+102533307 Msa0902770:CDS
TTCTAGACCTATGGAGTGGA+TGG 0.556564 6_1:+102530919 Msa0902770:CDS
AGAGGATCTGCCAAGTTTCG+TGG 0.558262 6_1:+102532983 Msa0902770:intron
GTCCTACGCCATAGCGAGGA+AGG 0.558992 6_1:-102533298 None:intergenic
GGAGATGTTGAAAGATGAAG+TGG 0.561512 6_1:+102531530 Msa0902770:intron
ACACTGCTACTCTTCCTCGT+GGG 0.568751 6_1:+102531577 Msa0902770:CDS
CAAGCTTGAGGCTCTTAAAG+TGG 0.569056 6_1:+102530958 Msa0902770:CDS
AAGACTTTCGGCCAAGCTTG+AGG 0.570238 6_1:+102530946 Msa0902770:CDS
CTTTCACACACGCATGCCAA+AGG 0.571433 6_1:-102533348 None:intergenic
CTATGGTCTGAAACATCTCT+AGG 0.571998 6_1:-102530784 None:intergenic
TTGATTTCCTCAGACGAGAA+GGG 0.576378 6_1:-102531429 None:intergenic
GTATCAAGATGAGGAGGTGT+AGG 0.576930 6_1:+102531229 Msa0902770:CDS
TTTCACACACGCATGCCAAA+GGG 0.578288 6_1:-102533347 None:intergenic
TGCCCACCAAGTGTTGTGCA+CGG 0.578655 6_1:-102533152 None:intergenic
AGTGGTGCCCTTCTCGTCTG+AGG 0.581561 6_1:+102531422 Msa0902770:CDS
CTCTTCCTTGTCTCTCTGAG+GGG 0.585511 6_1:+102531385 Msa0902770:CDS
CACACTGCTACTCTTCCTCG+TGG 0.585809 6_1:+102531576 Msa0902770:CDS
CCATTAGGGTAGGTAACAGG+TGG 0.586592 6_1:+102531265 Msa0902770:CDS
GCGTTTCAAAGTGTCCCGTA+AGG 0.587115 6_1:+102533518 Msa0902770:CDS
TGTGTGGGGAGGCTGCTCAG+TGG 0.587318 6_1:+102530755 Msa0902770:CDS
AGAGATACCCCATCCAGGGT+AGG 0.588751 6_1:-102531366 None:intergenic
TCACGAATCTCATTCCCCAT+CGG 0.590205 6_1:-102530598 None:intergenic
TTATTGCCCTACCCTGGATG+GGG 0.591430 6_1:+102531359 Msa0902770:CDS
TGCTCTAAATGGCTTAAGGA+AGG 0.592389 6_1:+102531177 Msa0902770:CDS
CTTACCGCCATCCACTCCAT+AGG 0.592621 6_1:-102530926 None:intergenic
CAAAATCGCAAGAACGTAGG+TGG 0.599008 6_1:+102533052 Msa0902770:CDS
GTCCTTCCTCGCTATGGCGT+AGG 0.602955 6_1:+102533296 Msa0902770:CDS
CGCCTTACGAGGTCCACCAA+CGG 0.608081 6_1:+102533547 Msa0902770:CDS
GCTGGTCGGCAAGCGAACGA+CGG 0.611074 6_1:+102533602 Msa0902770:CDS
TCTTCCTTGTCTCTCTGAGG+GGG 0.611750 6_1:+102531386 Msa0902770:CDS
AGGAAGAGATACCCCATCCA+GGG 0.613091 6_1:-102531370 None:intergenic
TGGCCGGATTTCTAGTCATG+TGG 0.621019 6_1:+102531021 Msa0902770:CDS
TAAGGCTCATCCGCCTTACG+AGG 0.623712 6_1:+102533536 Msa0902770:CDS
TCTATCTTGGCCATTAGGGT+AGG 0.629779 6_1:+102531255 Msa0902770:CDS
GCTTGCCGACCAGCAGTAGG+GGG 0.631265 6_1:-102533593 None:intergenic
ACTGAGCAGCCTCCCCACAC+AGG 0.631545 6_1:-102530753 None:intergenic
ACGCCTCTAAGTCAGAATCC+GGG 0.632635 6_1:-102533644 None:intergenic
TTCAGTCATAATCCAACGCA+CGG 0.633696 6_1:+102533666 Msa0902770:CDS
TCCTCATCTTGATACTCGAG+TGG 0.635113 6_1:-102531221 None:intergenic
ATACACTCAATGTGTTGCGT+CGG 0.635173 6_1:-102533111 None:intergenic
CGTTGGTGGACCTCGTAAGG+CGG 0.639269 6_1:-102533546 None:intergenic
TCCACTCCATAGGTCTAGAA+CGG 0.643537 6_1:-102530916 None:intergenic
AATAAGACACAATCTCCGCA+TGG 0.644305 6_1:-102531308 None:intergenic
CGTGTGTGAAAGGCTACATG+TGG 0.646955 6_1:+102533359 Msa0902770:CDS
TTTCGAAGTCATAAACGCCA+AGG 0.648887 6_1:-102533324 None:intergenic
ACCGTTCTAGACCTATGGAG+TGG 0.653251 6_1:+102530915 Msa0902770:CDS
TCCACTCGAGTATCAAGATG+AGG 0.653688 6_1:+102531220 Msa0902770:CDS
GCGCTTGGTTGAAAAGCCAG+TGG 0.658435 6_1:-102533699 None:intergenic
GTAATTCAACCTAGTACGAG+AGG 0.658560 6_1:-102533749 None:intergenic
ACGTGGAGTCAACCTAATGG+TGG 0.664680 6_1:+102530682 Msa0902770:CDS
TGCGTCGGTAGCCTCTTCAG+AGG 0.670945 6_1:-102533096 None:intergenic
GTGCAAAATCGCAAGAACGT+AGG 0.671615 6_1:+102533049 Msa0902770:CDS
TAGACCTATGGAGTGGATGG+CGG 0.675701 6_1:+102530922 Msa0902770:CDS
GTGAAAAGCCTACCTAGGAG+AGG 0.677788 6_1:-102530661 None:intergenic
TCCACGTGAAAAGCCTACCT+AGG 0.679113 6_1:-102530666 None:intergenic
CAACGGCACGTGCCTCTCGG+GGG 0.680386 6_1:+102533564 Msa0902770:CDS
TTAAAGTGGATCTAAAAGCG+TGG 0.684586 6_1:+102530972 Msa0902770:CDS
ACTCGAGTATCAAGATGAGG+AGG 0.687151 6_1:+102531223 Msa0902770:CDS
CATTAGGGTAGGTAACAGGT+GGG 0.700251 6_1:+102531266 Msa0902770:CDS
AATTAGGGTAATGAAATACG+AGG 0.752620 6_1:-102531604 None:intergenic
GTGTGTGAAAGGCTACATGT+GGG 0.761064 6_1:+102533360 Msa0902770:CDS
AAATACGAGGAGAACCCACG+AGG 0.766604 6_1:-102531591 None:intergenic
GAGTGTCCCAGAGATCCATG+CGG 0.774549 6_1:+102531293 Msa0902770:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCAAGGTTTTCATGATTTA+TGG + chr6_1:102531113-102531132 Msa0902770:intron 25.0%
!!! CTCATTTTTTAAACATTCCT+AGG + chr6_1:102531509-102531528 Msa0902770:intron 25.0%
! CGAAAAAATCAAATAAATCG+AGG - chr6_1:102532075-102532094 None:intergenic 25.0%
! CGAAAAATCAAAATAAATCG+AGG - chr6_1:102532391-102532410 None:intergenic 25.0%
! CGAAAAATCAAAATAAATCG+AGG - chr6_1:102532391-102532410 None:intergenic 25.0%
ATCACTTTCTTCTTTCTGAT+GGG + chr6_1:102530722-102530741 Msa0902770:CDS 30.0%
TCAGATATTCGTACCAATTA+TGG + chr6_1:102530818-102530837 Msa0902770:intron 30.0%
CAGATATTCGTACCAATTAT+GGG + chr6_1:102530819-102530838 Msa0902770:intron 30.0%
AGATATTCGTACCAATTATG+GGG + chr6_1:102530820-102530839 Msa0902770:intron 30.0%
ATCATGAAAACCTTGAAATC+TGG - chr6_1:102531110-102531129 None:intergenic 30.0%
TGAAAGATTCTCAAACTTTC+AGG + chr6_1:102531148-102531167 Msa0902770:intron 30.0%
AATTAGGGTAATGAAATACG+AGG - chr6_1:102531607-102531626 None:intergenic 30.0%
! AATTTTGTCCCCCAAATATT+CGG + chr6_1:102531834-102531853 Msa0902770:intron 30.0%
CCATGTTTAGTACATCATAA+GGG + chr6_1:102531857-102531876 Msa0902770:intron 30.0%
AAATTCGCCAAAATTTCTTG+GGG - chr6_1:102531887-102531906 None:intergenic 30.0%
CAAATTCGCCAAAATTTCTT+GGG - chr6_1:102531888-102531907 None:intergenic 30.0%
CTCTATAAAAATACATGCAG+AGG + chr6_1:102532018-102532037 Msa0902770:intron 30.0%
! AATTTTGTCCCCCAAATATT+CGG + chr6_1:102531834-102531853 Msa0902770:intron 30.0%
CCATGTTTAGTACATCATAA+GGG + chr6_1:102531857-102531876 Msa0902770:intron 30.0%
AAATTCGCCAAAATTTCTTG+GGG - chr6_1:102531887-102531906 None:intergenic 30.0%
CAAATTCGCCAAAATTTCTT+GGG - chr6_1:102531888-102531907 None:intergenic 30.0%
CTCTATAAAAATACATGCAG+AGG + chr6_1:102532018-102532037 Msa0902770:intron 30.0%
! AATTTTGTCCCCCAAATATT+CGG + chr6_1:102531834-102531853 Msa0902770:intron 30.0%
CCATGTTTAGTACATCATAA+GGG + chr6_1:102531857-102531876 Msa0902770:intron 30.0%
AAATTCGCCAAAATTTCTTG+GGG - chr6_1:102531887-102531906 None:intergenic 30.0%
CAAATTCGCCAAAATTTCTT+GGG - chr6_1:102531888-102531907 None:intergenic 30.0%
CTCTATAAAAATACATGCAG+AGG + chr6_1:102532018-102532037 Msa0902770:intron 30.0%
! AATTTTGTCCCCCAAATATT+CGG + chr6_1:102531834-102531853 Msa0902770:intron 30.0%
CCATGTTTAGTACATCATAA+GGG + chr6_1:102531857-102531876 Msa0902770:intron 30.0%
AAATTCGCCAAAATTTCTTG+GGG - chr6_1:102531887-102531906 None:intergenic 30.0%
CAAATTCGCCAAAATTTCTT+GGG - chr6_1:102531888-102531907 None:intergenic 30.0%
CTCTATAAAAATACATGCAG+AGG + chr6_1:102532018-102532037 Msa0902770:intron 30.0%
TCGAAAAATCAAATAAGTCG+AGG - chr6_1:102533022-102533041 None:intergenic 30.0%
GATCACTTTCTTCTTTCTGA+TGG + chr6_1:102530721-102530740 Msa0902770:CDS 35.0%
ACGAATATCTGAGAACGATA+GGG - chr6_1:102530810-102530829 None:intergenic 35.0%
TACGAATATCTGAGAACGAT+AGG - chr6_1:102530811-102530830 None:intergenic 35.0%
GATATTCGTACCAATTATGG+GGG + chr6_1:102530821-102530840 Msa0902770:intron 35.0%
TTAAAGTGGATCTAAAAGCG+TGG + chr6_1:102530972-102530991 Msa0902770:CDS 35.0%
!! CAGGCTTTTGATGTTTTAGA+TGG + chr6_1:102531001-102531020 Msa0902770:CDS 35.0%
!! CTTTTGATGTTTTAGATGGC+CGG + chr6_1:102531005-102531024 Msa0902770:CDS 35.0%
!! CATCTTCTTCTTTGAGATCT+AGG - chr6_1:102531060-102531079 None:intergenic 35.0%
CTAGATCTCAAAGAAGAAGA+TGG + chr6_1:102531058-102531077 Msa0902770:CDS 35.0%
!! GGAGATTGTGTCTTATTTCA+GGG + chr6_1:102531314-102531333 Msa0902770:CDS 35.0%
AATGAGAAATTGAATCCGTC+TGG - chr6_1:102531495-102531514 None:intergenic 35.0%
TTCATCTTTCAACATCTCCT+AGG - chr6_1:102531529-102531548 None:intergenic 35.0%
TTTCATTACCCTAATTCCGA+AGG + chr6_1:102531611-102531630 Msa0902770:CDS 35.0%
TAAACATGGCCGAATATTTG+GGG - chr6_1:102531846-102531865 None:intergenic 35.0%
CTAAACATGGCCGAATATTT+GGG - chr6_1:102531847-102531866 None:intergenic 35.0%
ACTAAACATGGCCGAATATT+TGG - chr6_1:102531848-102531867 None:intergenic 35.0%
GCCATGTTTAGTACATCATA+AGG + chr6_1:102531856-102531875 Msa0902770:intron 35.0%
CCCTTATGATGTACTAAACA+TGG - chr6_1:102531860-102531879 None:intergenic 35.0%
AATTCGCCAAAATTTCTTGG+GGG - chr6_1:102531886-102531905 None:intergenic 35.0%
GCAAATTCGCCAAAATTTCT+TGG - chr6_1:102531889-102531908 None:intergenic 35.0%
!!! ATTTTGAGCTGGTTTTTTGC+AGG + chr6_1:102531992-102532011 Msa0902770:intron 35.0%
TAAACATGGCCGAATATTTG+GGG - chr6_1:102531846-102531865 None:intergenic 35.0%
CTAAACATGGCCGAATATTT+GGG - chr6_1:102531847-102531866 None:intergenic 35.0%
ACTAAACATGGCCGAATATT+TGG - chr6_1:102531848-102531867 None:intergenic 35.0%
GCCATGTTTAGTACATCATA+AGG + chr6_1:102531856-102531875 Msa0902770:intron 35.0%
CCCTTATGATGTACTAAACA+TGG - chr6_1:102531860-102531879 None:intergenic 35.0%
AATTCGCCAAAATTTCTTGG+GGG - chr6_1:102531886-102531905 None:intergenic 35.0%
GCAAATTCGCCAAAATTTCT+TGG - chr6_1:102531889-102531908 None:intergenic 35.0%
!!! ATTTTGAGCTGGTTTTTTGC+AGG + chr6_1:102531992-102532011 Msa0902770:intron 35.0%
!! AAAATAAATCGAGGCGTTGT+CGG - chr6_1:102532382-102532401 None:intergenic 35.0%
TAAACATGGCCGAATATTTG+GGG - chr6_1:102531846-102531865 None:intergenic 35.0%
CTAAACATGGCCGAATATTT+GGG - chr6_1:102531847-102531866 None:intergenic 35.0%
ACTAAACATGGCCGAATATT+TGG - chr6_1:102531848-102531867 None:intergenic 35.0%
GCCATGTTTAGTACATCATA+AGG + chr6_1:102531856-102531875 Msa0902770:intron 35.0%
CCCTTATGATGTACTAAACA+TGG - chr6_1:102531860-102531879 None:intergenic 35.0%
AATTCGCCAAAATTTCTTGG+GGG - chr6_1:102531886-102531905 None:intergenic 35.0%
GCAAATTCGCCAAAATTTCT+TGG - chr6_1:102531889-102531908 None:intergenic 35.0%
!! AAAATAAATCGAGGCGTTGT+CGG - chr6_1:102532382-102532401 None:intergenic 35.0%
TAAACATGGCCGAATATTTG+GGG - chr6_1:102531846-102531865 None:intergenic 35.0%
CTAAACATGGCCGAATATTT+GGG - chr6_1:102531847-102531866 None:intergenic 35.0%
ACTAAACATGGCCGAATATT+TGG - chr6_1:102531848-102531867 None:intergenic 35.0%
GCCATGTTTAGTACATCATA+AGG + chr6_1:102531856-102531875 Msa0902770:intron 35.0%
CCCTTATGATGTACTAAACA+TGG - chr6_1:102531860-102531879 None:intergenic 35.0%
AATTCGCCAAAATTTCTTGG+GGG - chr6_1:102531886-102531905 None:intergenic 35.0%
GCAAATTCGCCAAAATTTCT+TGG - chr6_1:102531889-102531908 None:intergenic 35.0%
TTTATGACTTCGAAACCCTT+TGG + chr6_1:102533332-102533351 Msa0902770:CDS 35.0%
ACTTTCTTCTTTCTGATGGG+TGG + chr6_1:102530725-102530744 Msa0902770:CDS 40.0%
! CTATGGTCTGAAACATCTCT+AGG - chr6_1:102530787-102530806 None:intergenic 40.0%
!! ACAACTTTTGGTTGACCACA+AGG + chr6_1:102530862-102530881 Msa0902770:intron 40.0%
! TGGTTGACCACAAGGATTTT+AGG + chr6_1:102530870-102530889 Msa0902770:intron 40.0%
! GGTTGACCACAAGGATTTTA+GGG + chr6_1:102530871-102530890 Msa0902770:intron 40.0%
CATCCACATGACTAGAAATC+CGG - chr6_1:102531027-102531046 None:intergenic 40.0%
! GTCTTGCTCTAAATGGCTTA+AGG + chr6_1:102531173-102531192 Msa0902770:CDS 40.0%
! TGCTCTAAATGGCTTAAGGA+AGG + chr6_1:102531177-102531196 Msa0902770:CDS 40.0%
GAACTCTATCTTGGCCATTA+GGG + chr6_1:102531251-102531270 Msa0902770:CDS 40.0%
AATAAGACACAATCTCCGCA+TGG - chr6_1:102531311-102531330 None:intergenic 40.0%
!! CGGAGATTGTGTCTTATTTC+AGG + chr6_1:102531313-102531332 Msa0902770:CDS 40.0%
TTGATTTCCTCAGACGAGAA+GGG - chr6_1:102531432-102531451 None:intergenic 40.0%
! TTTGATTTCCTCAGACGAGA+AGG - chr6_1:102531433-102531452 None:intergenic 40.0%
TCTCGTCTGAGGAAATCAAA+AGG + chr6_1:102531433-102531452 Msa0902770:CDS 40.0%
CTCGTCTGAGGAAATCAAAA+GGG + chr6_1:102531434-102531453 Msa0902770:CDS 40.0%
GGAGATGTTGAAAGATGAAG+TGG + chr6_1:102531530-102531549 Msa0902770:intron 40.0%
!! ATTGAGGTTTTTGAGCGTGT+CGG - chr6_1:102531780-102531799 None:intergenic 40.0%
AAACATGGCCGAATATTTGG+GGG - chr6_1:102531845-102531864 None:intergenic 40.0%
!! AATTTTGGCGAATTTGCACG+CGG + chr6_1:102531892-102531911 Msa0902770:intron 40.0%
TAAGCGTCAAAACGTCAAGA+AGG + chr6_1:102531936-102531955 Msa0902770:intron 40.0%
CAGCTCAAAATTCGAACTCT+AGG - chr6_1:102531983-102532002 None:intergenic 40.0%
! CTAGAGTTCGAATTTTGAGC+TGG + chr6_1:102531981-102532000 Msa0902770:intron 40.0%
!! CAAATAAATCGAGGCGTTGT+CGG - chr6_1:102532066-102532085 None:intergenic 40.0%
!!! AATTGAGGTTTTGAGCGTGT+CGG - chr6_1:102532099-102532118 None:intergenic 40.0%
AAACATGGCCGAATATTTGG+GGG - chr6_1:102531845-102531864 None:intergenic 40.0%
!! AATTTTGGCGAATTTGCACG+CGG + chr6_1:102531892-102531911 Msa0902770:intron 40.0%
TAAGCGTCAAAACGTCAAGA+AGG + chr6_1:102531936-102531955 Msa0902770:intron 40.0%
CAGCTCAAAATTCGAACTCT+AGG - chr6_1:102531983-102532002 None:intergenic 40.0%
! CTAGAGTTCGAATTTTGAGC+TGG + chr6_1:102531981-102532000 Msa0902770:intron 40.0%
!!! AATTGAGGTTTTGAGCGTGT+CGG - chr6_1:102532099-102532118 None:intergenic 40.0%
AAACATGGCCGAATATTTGG+GGG - chr6_1:102531845-102531864 None:intergenic 40.0%
!! AATTTTGGCGAATTTGCACG+CGG + chr6_1:102531892-102531911 Msa0902770:intron 40.0%
TAAGCGTCAAAACGTCAAGA+AGG + chr6_1:102531936-102531955 Msa0902770:intron 40.0%
CAGCTCAAAACTCGAATTCT+AGG - chr6_1:102532615-102532634 None:intergenic 40.0%
!!! CTAGAATTCGAGTTTTGAGC+TGG + chr6_1:102532613-102532632 Msa0902770:intron 40.0%
!!! GTTTTGAGCTGGTTTTTTGC+AGG + chr6_1:102532624-102532643 Msa0902770:intron 40.0%
!!! AATTGAGGTTTTGAGCGTGT+CGG - chr6_1:102532099-102532118 None:intergenic 40.0%
AAACATGGCCGAATATTTGG+GGG - chr6_1:102531845-102531864 None:intergenic 40.0%
!! AATTTTGGCGAATTTGCACG+CGG + chr6_1:102531892-102531911 Msa0902770:intron 40.0%
TAAGCGTCAAAACGTCAAGA+AGG + chr6_1:102531936-102531955 Msa0902770:intron 40.0%
CAGCTCAAAACTCGAATTCT+AGG - chr6_1:102532615-102532634 None:intergenic 40.0%
!!! CTAGAATTCGAGTTTTGAGC+TGG + chr6_1:102532613-102532632 Msa0902770:intron 40.0%
!!! GTTTTGAGCTGGTTTTTTGC+AGG + chr6_1:102532624-102532643 Msa0902770:intron 40.0%
! TCTTGCGATTTTGCACTCTT+TGG - chr6_1:102533045-102533064 None:intergenic 40.0%
!!! TTTTAGCTCATCCTCTGAAG+AGG + chr6_1:102533085-102533104 Msa0902770:CDS 40.0%
ATACACTCAATGTGTTGCGT+CGG - chr6_1:102533114-102533133 None:intergenic 40.0%
!!! TTGAGTGGGTTGAGTTTTGT+GGG - chr6_1:102533199-102533218 None:intergenic 40.0%
TCGACACACTTCTATTTGAC+TGG - chr6_1:102533224-102533243 None:intergenic 40.0%
TTTCGAAGTCATAAACGCCA+AGG - chr6_1:102533327-102533346 None:intergenic 40.0%
CGTATTTAAGTCGTCTGCAA+AGG + chr6_1:102533469-102533488 Msa0902770:intron 40.0%
GAAACGCAATTCCTATTGAG+CGG - chr6_1:102533505-102533524 None:intergenic 40.0%
TTCAGTCATAATCCAACGCA+CGG + chr6_1:102533666-102533685 Msa0902770:CDS 40.0%
TGACCAATTGTGCGAATCAA+CGG + chr6_1:102533724-102533743 Msa0902770:CDS 40.0%
CTTCTTCACTTTCCTCTCCT+AGG + chr6_1:102530649-102530668 Msa0902770:CDS 45.0%
TTCACTTTCCTCTCCTAGGT+AGG + chr6_1:102530653-102530672 Msa0902770:CDS 45.0%
TTCACGTGGAGTCAACCTAA+TGG + chr6_1:102530679-102530698 Msa0902770:CDS 45.0%
! TTCTTCTTTCTGATGGGTGG+TGG + chr6_1:102530728-102530747 Msa0902770:CDS 45.0%
! TCTTCTTTCTGATGGGTGGT+GGG + chr6_1:102530729-102530748 Msa0902770:CDS 45.0%
ATCTGAGAACGATAGGGCTA+TGG - chr6_1:102530804-102530823 None:intergenic 45.0%
! TCGTTCAGGTGCACAACTTT+TGG + chr6_1:102530850-102530869 Msa0902770:intron 45.0%
CCACATCCCTAAAATCCTTG+TGG - chr6_1:102530880-102530899 None:intergenic 45.0%
!! CCACAAGGATTTTAGGGATG+TGG + chr6_1:102530877-102530896 Msa0902770:intron 45.0%
!! CAAGGATTTTAGGGATGTGG+TGG + chr6_1:102530880-102530899 Msa0902770:intron 45.0%
TCCACTCCATAGGTCTAGAA+CGG - chr6_1:102530919-102530938 None:intergenic 45.0%
TTCTAGACCTATGGAGTGGA+TGG + chr6_1:102530919-102530938 Msa0902770:CDS 45.0%
! CACTTTAAGAGCCTCAAGCT+TGG - chr6_1:102530960-102530979 None:intergenic 45.0%
CAAGCTTGAGGCTCTTAAAG+TGG + chr6_1:102530958-102530977 Msa0902770:CDS 45.0%
! TCTAAAAGCGTGGCATATGC+AGG + chr6_1:102530982-102531001 Msa0902770:CDS 45.0%
CTAGTCATGTGGATGTGCTT+AGG + chr6_1:102531032-102531051 Msa0902770:CDS 45.0%
! AACCTTGAAATCTGGCTTCC+AGG - chr6_1:102531102-102531121 None:intergenic 45.0%
! TCAGGCAGTCTTGCTCTAAA+TGG + chr6_1:102531166-102531185 Msa0902770:intron 45.0%
AAGGAAGGCGATGCAAATTC+TGG + chr6_1:102531192-102531211 Msa0902770:CDS 45.0%
TCCACTCGAGTATCAAGATG+AGG + chr6_1:102531220-102531239 Msa0902770:CDS 45.0%
TCCTCATCTTGATACTCGAG+TGG - chr6_1:102531224-102531243 None:intergenic 45.0%
ACTCGAGTATCAAGATGAGG+AGG + chr6_1:102531223-102531242 Msa0902770:CDS 45.0%
! GTATCAAGATGAGGAGGTGT+AGG + chr6_1:102531229-102531248 Msa0902770:CDS 45.0%
GAGGTGTAGGAACTCTATCT+TGG + chr6_1:102531242-102531261 Msa0902770:CDS 45.0%
GGAACTCTATCTTGGCCATT+AGG + chr6_1:102531250-102531269 Msa0902770:CDS 45.0%
TCTATCTTGGCCATTAGGGT+AGG + chr6_1:102531255-102531274 Msa0902770:CDS 45.0%
CATTAGGGTAGGTAACAGGT+GGG + chr6_1:102531266-102531285 Msa0902770:CDS 45.0%
ATCTCTTCCTTGTCTCTCTG+AGG + chr6_1:102531383-102531402 Msa0902770:CDS 45.0%
TCTCTTCCTTGTCTCTCTGA+GGG + chr6_1:102531384-102531403 Msa0902770:CDS 45.0%
GTCTGAGGAAATCAAAAGGG+TGG + chr6_1:102531437-102531456 Msa0902770:intron 45.0%
TGAGGAAATCAAAAGGGTGG+TGG + chr6_1:102531440-102531459 Msa0902770:intron 45.0%
TCAGATGGGAATAAGAGTCC+TGG + chr6_1:102531468-102531487 Msa0902770:intron 45.0%
AATAAGAGTCCTGGACCAGA+CGG + chr6_1:102531477-102531496 Msa0902770:intron 45.0%
AAATTGAATCCGTCTGGTCC+AGG - chr6_1:102531489-102531508 None:intergenic 45.0%
CTAAAGTCCCCAATCCTACT+AGG - chr6_1:102531645-102531664 None:intergenic 45.0%
CTAGTAGGATTGGGGACTTT+AGG + chr6_1:102531643-102531662 Msa0902770:intron 45.0%
!! ATTTTGGCGAATTTGCACGC+GGG + chr6_1:102531893-102531912 Msa0902770:intron 45.0%
!!! TGTCGGTTTTCCACGAAACT+TGG - chr6_1:102532049-102532068 None:intergenic 45.0%
!! ATTTTGGCGAATTTGCACGC+GGG + chr6_1:102531893-102531912 Msa0902770:intron 45.0%
!!! TGTCGGTTTTCCACGAAACT+TGG - chr6_1:102532049-102532068 None:intergenic 45.0%
!! ATTTTGGCGAATTTGCACGC+GGG + chr6_1:102531893-102531912 Msa0902770:intron 45.0%
!!! TGTCGGTTTTCCACGAAACT+TGG - chr6_1:102532049-102532068 None:intergenic 45.0%
!! ATTTTGGCGAATTTGCACGC+GGG + chr6_1:102531893-102531912 Msa0902770:intron 45.0%
!!! TGTCGGTTTTCCACGAAACT+TGG - chr6_1:102532049-102532068 None:intergenic 45.0%
!! CAAATAAGTCGAGGCGTTGT+CGG - chr6_1:102533013-102533032 None:intergenic 45.0%
GTGCAAAATCGCAAGAACGT+AGG + chr6_1:102533049-102533068 Msa0902770:CDS 45.0%
CAAAATCGCAAGAACGTAGG+TGG + chr6_1:102533052-102533071 Msa0902770:CDS 45.0%
!!! TGAGTGGGTTGAGTTTTGTG+GGG - chr6_1:102533198-102533217 None:intergenic 45.0%
!!! CTTGAGTGGGTTGAGTTTTG+TGG - chr6_1:102533200-102533219 None:intergenic 45.0%
CACAAAACTCAACCCACTCA+AGG + chr6_1:102533198-102533217 Msa0902770:intron 45.0%
!! CTATTTGACTGGCCTTGAGT+GGG - chr6_1:102533213-102533232 None:intergenic 45.0%
!! TCTATTTGACTGGCCTTGAG+TGG - chr6_1:102533214-102533233 None:intergenic 45.0%
TCGCTATCAAAAACGCCAAG+GGG - chr6_1:102533275-102533294 None:intergenic 45.0%
CTCGCTATCAAAAACGCCAA+GGG - chr6_1:102533276-102533295 None:intergenic 45.0%
TTTCACACACGCATGCCAAA+GGG - chr6_1:102533350-102533369 None:intergenic 45.0%
GTGTGTGAAAGGCTACATGT+GGG + chr6_1:102533360-102533379 Msa0902770:CDS 45.0%
TGAAAGGCTACATGTGGGTT+GGG + chr6_1:102533365-102533384 Msa0902770:intron 45.0%
AGACGACTTAAATACGCGAC+GGG - chr6_1:102533465-102533484 None:intergenic 45.0%
CAGACGACTTAAATACGCGA+CGG - chr6_1:102533466-102533485 None:intergenic 45.0%
AACGCCTCTAAGTCAGAATC+CGG - chr6_1:102533648-102533667 None:intergenic 45.0%
!! GAACCGTTGATTCGCACAAT+TGG - chr6_1:102533730-102533749 None:intergenic 45.0%
TTCCATCTTCGTGCAGCGTA+TGG + chr6_1:102530624-102530643 Msa0902770:CDS 50.0%
TCCATCTTCGTGCAGCGTAT+GGG + chr6_1:102530625-102530644 Msa0902770:CDS 50.0%
GTGAAAAGCCTACCTAGGAG+AGG - chr6_1:102530664-102530683 None:intergenic 50.0%
! TCCTAGGTAGGCTTTTCACG+TGG + chr6_1:102530665-102530684 Msa0902770:CDS 50.0%
TCCACGTGAAAAGCCTACCT+AGG - chr6_1:102530669-102530688 None:intergenic 50.0%
ACGTGGAGTCAACCTAATGG+TGG + chr6_1:102530682-102530701 Msa0902770:CDS 50.0%
ACGACTTAGGCCCCCATAAT+TGG - chr6_1:102530834-102530853 None:intergenic 50.0%
GTTGTGCACCTGAACGACTT+AGG - chr6_1:102530847-102530866 None:intergenic 50.0%
!! ATTTTAGGGATGTGGTGGCG+CGG + chr6_1:102530885-102530904 Msa0902770:CDS 50.0%
! CTGGTACCGTTCTAGACCTA+TGG + chr6_1:102530910-102530929 Msa0902770:CDS 50.0%
! ACCGTTCTAGACCTATGGAG+TGG + chr6_1:102530915-102530934 Msa0902770:CDS 50.0%
TAGACCTATGGAGTGGATGG+CGG + chr6_1:102530922-102530941 Msa0902770:CDS 50.0%
! GTGGATGGCGGTAAGACTTT+CGG + chr6_1:102530934-102530953 Msa0902770:CDS 50.0%
AAGACTTTCGGCCAAGCTTG+AGG + chr6_1:102530946-102530965 Msa0902770:CDS 50.0%
!! TGGCCGGATTTCTAGTCATG+TGG + chr6_1:102531021-102531040 Msa0902770:CDS 50.0%
GACCTGGAAGCCAGATTTCA+AGG + chr6_1:102531097-102531116 Msa0902770:intron 50.0%
TGGCCATTAGGGTAGGTAAC+AGG + chr6_1:102531262-102531281 Msa0902770:CDS 50.0%
CCACCTGTTACCTACCCTAA+TGG - chr6_1:102531268-102531287 None:intergenic 50.0%
CCATTAGGGTAGGTAACAGG+TGG + chr6_1:102531265-102531284 Msa0902770:CDS 50.0%
CAATCTCCGCATGGATCTCT+GGG - chr6_1:102531302-102531321 None:intergenic 50.0%
ACAATCTCCGCATGGATCTC+TGG - chr6_1:102531303-102531322 None:intergenic 50.0%
CTTATTGCCCTACCCTGGAT+GGG + chr6_1:102531358-102531377 Msa0902770:CDS 50.0%
TTATTGCCCTACCCTGGATG+GGG + chr6_1:102531359-102531378 Msa0902770:CDS 50.0%
AGGAAGAGATACCCCATCCA+GGG - chr6_1:102531373-102531392 None:intergenic 50.0%
AAGGAAGAGATACCCCATCC+AGG - chr6_1:102531374-102531393 None:intergenic 50.0%
CTCTTCCTTGTCTCTCTGAG+GGG + chr6_1:102531385-102531404 Msa0902770:CDS 50.0%
! TCTTCCTTGTCTCTCTGAGG+GGG + chr6_1:102531386-102531405 Msa0902770:CDS 50.0%
! GGAAATCAAAAGGGTGGTGG+TGG + chr6_1:102531443-102531462 Msa0902770:intron 50.0%
ACACTGCTACTCTTCCTCGT+GGG + chr6_1:102531577-102531596 Msa0902770:CDS 50.0%
AAATACGAGGAGAACCCACG+AGG - chr6_1:102531594-102531613 None:intergenic 50.0%
!! CGAAGGCACCTTCGGAATTA+GGG - chr6_1:102531622-102531641 None:intergenic 50.0%
TGCCTTCGCCTAGTAGGATT+GGG + chr6_1:102531634-102531653 Msa0902770:intron 50.0%
! CGCACTTTGGGGGAAAATTG+AGG - chr6_1:102531796-102531815 None:intergenic 50.0%
GACAAAATTTGACCCGTCGG+TGG - chr6_1:102531823-102531842 None:intergenic 50.0%
GGGGACAAAATTTGACCCGT+CGG - chr6_1:102531826-102531845 None:intergenic 50.0%
TCGCCAAAATTTCTTGGGGG+AGG - chr6_1:102531883-102531902 None:intergenic 50.0%
AGAGGATCTGCCAAGTTTCG+TGG + chr6_1:102532036-102532055 Msa0902770:intron 50.0%
GACAAAATTTGACCCGTCGG+TGG - chr6_1:102531823-102531842 None:intergenic 50.0%
GGGGACAAAATTTGACCCGT+CGG - chr6_1:102531826-102531845 None:intergenic 50.0%
TCGCCAAAATTTCTTGGGGG+AGG - chr6_1:102531883-102531902 None:intergenic 50.0%
AGAGGATCTGCCAAGTTTCG+TGG + chr6_1:102532036-102532055 Msa0902770:intron 50.0%
GACAAAATTTGACCCGTCGG+TGG - chr6_1:102531823-102531842 None:intergenic 50.0%
GGGGACAAAATTTGACCCGT+CGG - chr6_1:102531826-102531845 None:intergenic 50.0%
TCGCCAAAATTTCTTGGGGG+AGG - chr6_1:102531883-102531902 None:intergenic 50.0%
GAATTCTAGGTCGACTAGCG+CGG - chr6_1:102532602-102532621 None:intergenic 50.0%
AGAGGATCTGCCAAGTTTCG+TGG + chr6_1:102532036-102532055 Msa0902770:intron 50.0%
GACAAAATTTGACCCGTCGG+TGG - chr6_1:102531823-102531842 None:intergenic 50.0%
GGGGACAAAATTTGACCCGT+CGG - chr6_1:102531826-102531845 None:intergenic 50.0%
TCGCCAAAATTTCTTGGGGG+AGG - chr6_1:102531883-102531902 None:intergenic 50.0%
GAATTCTAGGTCGACTAGCG+CGG - chr6_1:102532602-102532621 None:intergenic 50.0%
AGAGGATCTGCCAAGTTTCG+TGG + chr6_1:102532036-102532055 Msa0902770:intron 50.0%
TAATGCAAGTCTTGCCCCCT+TGG + chr6_1:102533257-102533276 Msa0902770:intron 50.0%
CGCTATCAAAAACGCCAAGG+GGG - chr6_1:102533274-102533293 None:intergenic 50.0%
CCTCGCTATCAAAAACGCCA+AGG - chr6_1:102533277-102533296 None:intergenic 50.0%
!!! CCTTGGCGTTTTTGATAGCG+AGG + chr6_1:102533274-102533293 Msa0902770:intron 50.0%
CTTTCACACACGCATGCCAA+AGG - chr6_1:102533351-102533370 None:intergenic 50.0%
CTTTGGCATGCGTGTGTGAA+AGG + chr6_1:102533349-102533368 Msa0902770:CDS 50.0%
CGTGTGTGAAAGGCTACATG+TGG + chr6_1:102533359-102533378 Msa0902770:CDS 50.0%
GTGAAAGGCTACATGTGGGT+TGG + chr6_1:102533364-102533383 Msa0902770:intron 50.0%
! GGGTATTGTAAGTGGCAGAG+TGG - chr6_1:102533444-102533463 None:intergenic 50.0%
GACGACTTAAATACGCGACG+GGG - chr6_1:102533464-102533483 None:intergenic 50.0%
ACGCAATTCCTATTGAGCGG+CGG - chr6_1:102533502-102533521 None:intergenic 50.0%
! GCGTTTCAAAGTGTCCCGTA+AGG + chr6_1:102533518-102533537 Msa0902770:CDS 50.0%
TAGCCCGGATTCTGACTTAG+AGG + chr6_1:102533641-102533660 Msa0902770:CDS 50.0%
ACGCCTCTAAGTCAGAATCC+GGG - chr6_1:102533647-102533666 None:intergenic 50.0%
ACCCATACGCTGCACGAAGA+TGG - chr6_1:102530629-102530648 None:intergenic 55.0%
TATGGGGGCCTAAGTCGTTC+AGG + chr6_1:102530836-102530855 Msa0902770:intron 55.0%
CTTACCGCCATCCACTCCAT+AGG - chr6_1:102530929-102530948 None:intergenic 55.0%
TTCCAGGTCCTCTGGCAACA+GGG - chr6_1:102531086-102531105 None:intergenic 55.0%
! AATCTGGCTTCCAGGTCCTC+TGG - chr6_1:102531094-102531113 None:intergenic 55.0%
GAGTGTCCCAGAGATCCATG+CGG + chr6_1:102531293-102531312 Msa0902770:CDS 55.0%
GCTTATTGCCCTACCCTGGA+TGG + chr6_1:102531357-102531376 Msa0902770:CDS 55.0%
GAGATACCCCATCCAGGGTA+GGG - chr6_1:102531368-102531387 None:intergenic 55.0%
AGAGATACCCCATCCAGGGT+AGG - chr6_1:102531369-102531388 None:intergenic 55.0%
!! GAAGGGCACCACTAAATCCC+TGG - chr6_1:102531415-102531434 None:intergenic 55.0%
CACACTGCTACTCTTCCTCG+TGG + chr6_1:102531576-102531595 Msa0902770:CDS 55.0%
!! GCGAAGGCACCTTCGGAATT+AGG - chr6_1:102531623-102531642 None:intergenic 55.0%
!! CTACTAGGCGAAGGCACCTT+CGG - chr6_1:102531630-102531649 None:intergenic 55.0%
GTGCCTTCGCCTAGTAGGAT+TGG + chr6_1:102531633-102531652 Msa0902770:intron 55.0%
GCCTTCGCCTAGTAGGATTG+GGG + chr6_1:102531635-102531654 Msa0902770:intron 55.0%
TCCCCAATCCTACTAGGCGA+AGG - chr6_1:102531639-102531658 None:intergenic 55.0%
! GGGCCTCCCCCAAGAAATTT+TGG + chr6_1:102531877-102531896 Msa0902770:intron 55.0%
GAACTCTAGGTCGACTAGCG+CGG - chr6_1:102531970-102531989 None:intergenic 55.0%
GCGCACTTGGGGGAAAATTG+AGG - chr6_1:102532114-102532133 None:intergenic 55.0%
! GGGCCTCCCCCAAGAAATTT+TGG + chr6_1:102531877-102531896 Msa0902770:intron 55.0%
GAACTCTAGGTCGACTAGCG+CGG - chr6_1:102531970-102531989 None:intergenic 55.0%
GCGCACTTGGGGGAAAATTG+AGG - chr6_1:102532114-102532133 None:intergenic 55.0%
! GGGCCTCCCCCAAGAAATTT+TGG + chr6_1:102531877-102531896 Msa0902770:intron 55.0%
GCGCACTTGGGGGAAAATTG+AGG - chr6_1:102532114-102532133 None:intergenic 55.0%
! GGGCCTCCCCCAAGAAATTT+TGG + chr6_1:102531877-102531896 Msa0902770:intron 55.0%
TGTCGTCCGTGCACAACACT+TGG + chr6_1:102533146-102533165 Msa0902770:CDS 55.0%
GTCCGTGCACAACACTTGGT+GGG + chr6_1:102533150-102533169 Msa0902770:intron 55.0%
! TGCCCACCAAGTGTTGTGCA+CGG - chr6_1:102533155-102533174 None:intergenic 55.0%
! GCACAACACTTGGTGGGCAA+AGG + chr6_1:102533156-102533175 Msa0902770:intron 55.0%
TTTGTGGGGAAGTCGCAACG+CGG - chr6_1:102533184-102533203 None:intergenic 55.0%
CTATGGCGTAGGACATGCCT+TGG + chr6_1:102533307-102533326 Msa0902770:CDS 55.0%
!! AAGGCTACATGTGGGTTGGG+AGG + chr6_1:102533368-102533387 Msa0902770:intron 55.0%
!! AGGCTACATGTGGGTTGGGA+GGG + chr6_1:102533369-102533388 Msa0902770:intron 55.0%
AGGGACGAATCGAAGCGACA+AGG + chr6_1:102533388-102533407 Msa0902770:intron 55.0%
GGGACGAATCGAAGCGACAA+GGG + chr6_1:102533389-102533408 Msa0902770:intron 55.0%
CGACAAGGGCTGAATCTCAG+TGG + chr6_1:102533403-102533422 Msa0902770:intron 55.0%
GGCTGAATCTCAGTGGATCG+TGG + chr6_1:102533410-102533429 Msa0902770:intron 55.0%
!! ACGCGACGGGGTATTGTAAG+TGG - chr6_1:102533452-102533471 None:intergenic 55.0%
GATTCTACCCGCCGCTCAAT+AGG + chr6_1:102533491-102533510 Msa0902770:intron 55.0%
CGCAATTCCTATTGAGCGGC+GGG - chr6_1:102533501-102533520 None:intergenic 55.0%
GTAAGGCGGATGAGCCTTAC+GGG - chr6_1:102533535-102533554 None:intergenic 55.0%
CGTAAGGCGGATGAGCCTTA+CGG - chr6_1:102533536-102533555 None:intergenic 55.0%
TAAGGCTCATCCGCCTTACG+AGG + chr6_1:102533536-102533555 Msa0902770:CDS 55.0%
GCGCTTGGTTGAAAAGCCAG+TGG - chr6_1:102533702-102533721 None:intergenic 55.0%
GCACAATTGGTCATCGCGCT+TGG - chr6_1:102533717-102533736 None:intergenic 55.0%
CTGCTCGTCGCTCCACCATT+AGG - chr6_1:102530697-102530716 None:intergenic 60.0%
! CTAATGGTGGAGCGACGAGC+AGG + chr6_1:102530695-102530714 Msa0902770:CDS 60.0%
!! ATGGGTGGTGGGACCTGTGT+GGG + chr6_1:102530740-102530759 Msa0902770:CDS 60.0%
AGATGGTCCCCTGTTGCCAG+AGG + chr6_1:102531075-102531094 Msa0902770:intron 60.0%
TCCAGGTCCTCTGGCAACAG+GGG - chr6_1:102531085-102531104 None:intergenic 60.0%
CTTCCAGGTCCTCTGGCAAC+AGG - chr6_1:102531087-102531106 None:intergenic 60.0%
CGTCGCTTATTGCCCTACCC+TGG + chr6_1:102531353-102531372 Msa0902770:CDS 60.0%
GCTTCCCCCTCAGAGAGACA+AGG - chr6_1:102531393-102531412 None:intergenic 60.0%
! TCTCTCTGAGGGGGAAGCCA+GGG + chr6_1:102531395-102531414 Msa0902770:CDS 60.0%
GGGGGAAGCCAGGGATTTAG+TGG + chr6_1:102531404-102531423 Msa0902770:CDS 60.0%
AGTGGTGCCCTTCTCGTCTG+AGG + chr6_1:102531422-102531441 Msa0902770:CDS 60.0%
!! AGGGTGGTGGTGGAGTCAGA+TGG + chr6_1:102531453-102531472 Msa0902770:intron 60.0%
!! GGGTGGTGGTGGAGTCAGAT+GGG + chr6_1:102531454-102531473 Msa0902770:intron 60.0%
!! CGAAGGTGCCTTCGCCTAGT+AGG + chr6_1:102531628-102531647 Msa0902770:intron 60.0%
TCGGTGGATCGCGCACTTTG+GGG - chr6_1:102531807-102531826 None:intergenic 60.0%
GTCGGTGGATCGCGCACTTT+GGG - chr6_1:102531808-102531827 None:intergenic 60.0%
CAAAGTGCGCGATCCACCGA+CGG + chr6_1:102531807-102531826 Msa0902770:intron 60.0%
AAAGTGCGCGATCCACCGAC+GGG + chr6_1:102531808-102531827 Msa0902770:intron 60.0%
! TGCGTCGGTAGCCTCTTCAG+AGG - chr6_1:102533099-102533118 None:intergenic 60.0%
CGTCCGTGCACAACACTTGG+TGG + chr6_1:102533149-102533168 Msa0902770:intron 60.0%
AGCGAGGTCCTTCCTCGCTA+TGG + chr6_1:102533290-102533309 Msa0902770:intron 60.0%
GTCCTTCCTCGCTATGGCGT+AGG + chr6_1:102533296-102533315 Msa0902770:CDS 60.0%
GTCCTACGCCATAGCGAGGA+AGG - chr6_1:102533301-102533320 None:intergenic 60.0%
GCATGTCCTACGCCATAGCG+AGG - chr6_1:102533305-102533324 None:intergenic 60.0%
CTCAGTGGATCGTGGCAGCA+AGG + chr6_1:102533418-102533437 Msa0902770:intron 60.0%
! CGTTGGTGGACCTCGTAAGG+CGG - chr6_1:102533549-102533568 None:intergenic 60.0%
CGCCTTACGAGGTCCACCAA+CGG + chr6_1:102533547-102533566 Msa0902770:CDS 60.0%
! TGCCGTTGGTGGACCTCGTA+AGG - chr6_1:102533552-102533571 None:intergenic 60.0%
TCGCTTGCCGACCAGCAGTA+GGG - chr6_1:102533598-102533617 None:intergenic 60.0%
TTCGCTTGCCGACCAGCAGT+AGG - chr6_1:102533599-102533618 None:intergenic 60.0%
CACACGCATCGCTTCTAGCC+CGG + chr6_1:102533626-102533645 Msa0902770:CDS 60.0%
!! GATGGGTGGTGGGACCTGTG+TGG + chr6_1:102530739-102530758 Msa0902770:CDS 65.0%
!! TGGGTGGTGGGACCTGTGTG+GGG + chr6_1:102530741-102530760 Msa0902770:CDS 65.0%
ACTGAGCAGCCTCCCCACAC+AGG - chr6_1:102530756-102530775 None:intergenic 65.0%
TGTGTGGGGAGGCTGCTCAG+TGG + chr6_1:102530755-102530774 Msa0902770:CDS 65.0%
GTGTGGGGAGGCTGCTCAGT+GGG + chr6_1:102530756-102530775 Msa0902770:CDS 65.0%
TCCCCTGTTGCCAGAGGACC+TGG + chr6_1:102531081-102531100 Msa0902770:intron 65.0%
! GTCTCTCTGAGGGGGAAGCC+AGG + chr6_1:102531394-102531413 Msa0902770:CDS 65.0%
CGGTGGATCGCGCACTTTGG+GGG - chr6_1:102531806-102531825 None:intergenic 65.0%
CGTCGGTGGATCGCGCACTT+TGG - chr6_1:102531809-102531828 None:intergenic 65.0%
CACCAACGGCACGTGCCTCT+CGG + chr6_1:102533561-102533580 Msa0902770:CDS 65.0%
ACCAACGGCACGTGCCTCTC+GGG + chr6_1:102533562-102533581 Msa0902770:CDS 65.0%
CAAGGCCCCCTACTGCTGGT+CGG + chr6_1:102533588-102533607 Msa0902770:CDS 65.0%
GCTTGCCGACCAGCAGTAGG+GGG - chr6_1:102533596-102533615 None:intergenic 65.0%
CGCTTGCCGACCAGCAGTAG+GGG - chr6_1:102533597-102533616 None:intergenic 65.0%
GCTGGTCGGCAAGCGAACGA+CGG + chr6_1:102533602-102533621 Msa0902770:CDS 65.0%
CTGGTCGGCAAGCGAACGAC+GGG + chr6_1:102533603-102533622 Msa0902770:CDS 65.0%
! GTGGTGGGACCTGTGTGGGG+AGG + chr6_1:102530744-102530763 Msa0902770:CDS 70.0%
GTCGGTGGACGCGCACTTGG+GGG - chr6_1:102532124-102532143 None:intergenic 70.0%
CGTCGGTGGACGCGCACTTG+GGG - chr6_1:102532125-102532144 None:intergenic 70.0%
CCGTCGGTGGACGCGCACTT+GGG - chr6_1:102532126-102532145 None:intergenic 70.0%
CCCAAGTGCGCGTCCACCGA+CGG + chr6_1:102532123-102532142 Msa0902770:intron 70.0%
CCAAGTGCGCGTCCACCGAC+GGG + chr6_1:102532124-102532143 Msa0902770:intron 70.0%
GTCGGTGGACGCGCACTTGG+GGG - chr6_1:102532124-102532143 None:intergenic 70.0%
CGTCGGTGGACGCGCACTTG+GGG - chr6_1:102532125-102532144 None:intergenic 70.0%
CCGTCGGTGGACGCGCACTT+GGG - chr6_1:102532126-102532145 None:intergenic 70.0%
CCCAAGTGCGCGTCCACCGA+CGG + chr6_1:102532123-102532142 Msa0902770:intron 70.0%
CCAAGTGCGCGTCCACCGAC+GGG + chr6_1:102532124-102532143 Msa0902770:intron 70.0%
GTCGGTGGACGCGCACTTGG+GGG - chr6_1:102532124-102532143 None:intergenic 70.0%
CGTCGGTGGACGCGCACTTG+GGG - chr6_1:102532125-102532144 None:intergenic 70.0%
CCGTCGGTGGACGCGCACTT+GGG - chr6_1:102532126-102532145 None:intergenic 70.0%
CCCAAGTGCGCGTCCACCGA+CGG + chr6_1:102532123-102532142 Msa0902770:intron 70.0%
CCAAGTGCGCGTCCACCGAC+GGG + chr6_1:102532124-102532143 Msa0902770:intron 70.0%
! CGAGAGGCACGTGCCGTTGG+TGG - chr6_1:102533563-102533582 None:intergenic 70.0%
CCAACGGCACGTGCCTCTCG+GGG + chr6_1:102533563-102533582 Msa0902770:CDS 70.0%
CAACGGCACGTGCCTCTCGG+GGG + chr6_1:102533564-102533583 Msa0902770:CDS 70.0%
CGACCAGCAGTAGGGGGCCT+TGG - chr6_1:102533590-102533609 None:intergenic 70.0%
GGCGCGAAGCTACCGTGCGT+TGG - chr6_1:102533681-102533700 None:intergenic 70.0%
GCACGGTAGCTTCGCGCCAC+TGG + chr6_1:102533683-102533702 Msa0902770:CDS 70.0%
! GGGATGTGGTGGCGCGGAGC+TGG + chr6_1:102530891-102530910 Msa0902770:CDS 75.0%
CCCGTCGGTGGACGCGCACT+TGG - chr6_1:102532127-102532146 None:intergenic 75.0%
CCCGTCGGTGGACGCGCACT+TGG - chr6_1:102532127-102532146 None:intergenic 75.0%
CCCGTCGGTGGACGCGCACT+TGG - chr6_1:102532127-102532146 None:intergenic 75.0%
! CCCCGAGAGGCACGTGCCGT+TGG - chr6_1:102533566-102533585 None:intergenic 75.0%
CACGTGCCTCTCGGGGGCCA+AGG + chr6_1:102533570-102533589 Msa0902770:CDS 75.0%
GGGCCAAGGCCCCCTACTGC+TGG + chr6_1:102533584-102533603 Msa0902770:CDS 75.0%
! AGGGGGCCTTGGCCCCCGAG+AGG - chr6_1:102533579-102533598 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 102530601 102533761 102530601 ID=Msa0902770;Name=Msa0902770
chr6_1 mRNA 102530601 102533761 102530601 ID=Msa0902770-mRNA-1;Parent=Msa0902770;Name=Msa0902770-mRNA-1;_AED=0.47;_eAED=0.47;_QI=0|0|0|0.28|1|1|7|0|441
chr6_1 exon 102530601 102530813 102530601 ID=Msa0902770-mRNA-1:exon:18015;Parent=Msa0902770-mRNA-1
chr6_1 exon 102530884 102531086 102530884 ID=Msa0902770-mRNA-1:exon:18016;Parent=Msa0902770-mRNA-1
chr6_1 exon 102531170 102531455 102531170 ID=Msa0902770-mRNA-1:exon:18017;Parent=Msa0902770-mRNA-1
chr6_1 exon 102531531 102531632 102531531 ID=Msa0902770-mRNA-1:exon:18018;Parent=Msa0902770-mRNA-1
chr6_1 exon 102532985 102533167 102532985 ID=Msa0902770-mRNA-1:exon:18019;Parent=Msa0902770-mRNA-1
chr6_1 exon 102533292 102533381 102533292 ID=Msa0902770-mRNA-1:exon:18020;Parent=Msa0902770-mRNA-1
chr6_1 exon 102533513 102533761 102533513 ID=Msa0902770-mRNA-1:exon:18021;Parent=Msa0902770-mRNA-1
chr6_1 CDS 102530601 102530813 102530601 ID=Msa0902770-mRNA-1:cds;Parent=Msa0902770-mRNA-1
chr6_1 CDS 102530884 102531086 102530884 ID=Msa0902770-mRNA-1:cds;Parent=Msa0902770-mRNA-1
chr6_1 CDS 102531170 102531455 102531170 ID=Msa0902770-mRNA-1:cds;Parent=Msa0902770-mRNA-1
chr6_1 CDS 102531531 102531632 102531531 ID=Msa0902770-mRNA-1:cds;Parent=Msa0902770-mRNA-1
chr6_1 CDS 102532985 102533167 102532985 ID=Msa0902770-mRNA-1:cds;Parent=Msa0902770-mRNA-1
chr6_1 CDS 102533292 102533381 102533292 ID=Msa0902770-mRNA-1:cds;Parent=Msa0902770-mRNA-1
chr6_1 CDS 102533513 102533761 102533513 ID=Msa0902770-mRNA-1:cds;Parent=Msa0902770-mRNA-1
Gene Sequence

>Msa0902770

ATGGGGAATGAGATTCGTGACTTTTCCATCTTCGTGCAGCGTATGGGTCTTCTTCACTTTCCTCTCCTAGGTAGGCTTTTCACGTGGAGTCAACCTAATGGTGGAGCGACGAGCAGGCTTGATCACTTTCTTCTTTCTGATGGGTGGTGGGACCTGTGTGGGGAGGCTGCTCAGTGGGCTCTTCCTAGAGATGTTTCAGACCATAGCCCTATCGATTTTAGGGATGTGGTGGCGCGGAGCTGGTACCGTTCTAGACCTATGGAGTGGATGGCGGTAAGACTTTCGGCCAAGCTTGAGGCTCTTAAAGTGGATCTAAAAGCGTGGCATATGCAGGCTTTTGATGTTTTAGATGGCCGGATTTCTAGTCATGTGGATGTGCTTAGGCTCCTAGATCTCAAAGAAGAAGATGGTCCCCTGCAGTCTTGCTCTAAATGGCTTAAGGAAGGCGATGCAAATTCTGGATACTTCCACTCGAGTATCAAGATGAGGAGGTGTAGGAACTCTATCTTGGCCATTAGGGTAGGTAACAGGTGGGTTGAGAGTGTCCCAGAGATCCATGCGGAGATTGTGTCTTATTTCAGGGATCACTTCTCTGAAAACGTCGCTTATTGCCCTACCCTGGATGGGGTATCTCTTCCTTGTCTCTCTGAGGGGGAAGCCAGGGATTTAGTGGTGCCCTTCTCGTCTGAGGAAATCAAAAGGGAGATGTTGAAAGATGAAGTGGATTCTATGTTTCAACAATTATTTCACACTGCTACTCTTCCTCGTGGGTTCTCCTCGTATTTCATTACCCTAATTCCGAAGAGGATCTGCCAAGTTTCGTGGAAAACCGACAACGCCTCGACTTATTTGATTTTTCGACCAAAGAGTGCAAAATCGCAAGAACGTAGGTGGACGTTTGAGTTTTTAGCTCATCCTCTGAAGAGGCTACCGACGCAACACATTGAGTGTATATGCAATAGAAGTGTCGTCCGTGCACAACACTTGCGAGGTCCTTCCTCGCTATGGCGTAGGACATGCCTTGGCGTTTATGACTTCGAAACCCTTTGGCATGCGTGTGTGAAAGGCTACATGTGGGAATTGCGTTTCAAAGTGTCCCGTAAGGCTCATCCGCCTTACGAGGTCCACCAACGGCACGTGCCTCTCGGGGGCCAAGGCCCCCTACTGCTGGTCGGCAAGCGAACGACGGGCACACGCATCGCTTCTAGCCCGGATTCTGACTTAGAGGCGTTCAGTCATAATCCAACGCACGGTAGCTTCGCGCCACTGGCTTTTCAACCAAGCGCGATGACCAATTGTGCGAATCAACGGTTCCTCTCGTACTAG
Protein sequence

>Msa0902770

MGNEIRDFSIFVQRMGLLHFPLLGRLFTWSQPNGGATSRLDHFLLSDGWWDLCGEAAQWALPRDVSDHSPIDFRDVVARSWYRSRPMEWMAVRLSAKLEALKVDLKAWHMQAFDVLDGRISSHVDVLRLLDLKEEDGPLQSCSKWLKEGDANSGYFHSSIKMRRCRNSILAIRVGNRWVESVPEIHAEIVSYFRDHFSENVAYCPTLDGVSLPCLSEGEARDLVVPFSSEEIKREMLKDEVDSMFQQLFHTATLPRGFSSYFITLIPKRICQVSWKTDNASTYLIFRPKSAKSQERRWTFEFLAHPLKRLPTQHIECICNRSVVRAQHLRGPSSLWRRTCLGVYDFETLWHACVKGYMWELRFKVSRKAHPPYEVHQRHVPLGGQGPLLLVGKRTTGTRIASSPDSDLEAFSHNPTHGSFAPLAFQPSAMTNCANQRFLSY*