Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0908850 | GEV11601.1 | 86.228 | 167 | 3 | 1 | 1 | 147 | 33 | 199 | 1.36e-88 | 277 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0908850 | sp|P08743|COX1_OENBE | 56.504 | 246 | 37 | 2 | 1 | 176 | 72 | 317 | 7.13e-63 | 207 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0034970 | Msa0908850 | -0.808075 | 3.700202e-50 | -8.615850e-47 |
| Msa0069500 | Msa0908850 | 0.828632 | 8.071208e-55 | -8.615850e-47 |
| Msa0069510 | Msa0908850 | 0.836217 | 1.064729e-56 | -8.615850e-47 |
| Msa0069520 | Msa0908850 | 0.825345 | 4.931018e-54 | -8.615850e-47 |
| Msa0697990 | Msa0908850 | 0.899858 | 1.306355e-77 | -8.615850e-47 |
| Msa0709160 | Msa0908850 | -0.807834 | 4.164230e-50 | -8.615850e-47 |
| Msa0721280 | Msa0908850 | -0.801859 | 7.378758e-49 | -8.615850e-47 |
| Msa0253200 | Msa0908850 | -0.800462 | 1.425261e-48 | -8.615850e-47 |
| Msa0292030 | Msa0908850 | -0.802811 | 4.700152e-49 | -8.615850e-47 |
| Msa0902770 | Msa0908850 | 0.808847 | 2.532457e-50 | -8.615850e-47 |
| Msa0908820 | Msa0908850 | 0.827426 | 1.575114e-54 | -8.615850e-47 |
| Msa0908830 | Msa0908850 | 0.927992 | 5.414895e-92 | -8.615850e-47 |
| Msa0908840 | Msa0908850 | 0.881611 | 2.077800e-70 | -8.615850e-47 |
| Msa0908850 | Msa0908870 | 0.907156 | 6.866841e-81 | -8.615850e-47 |
| Msa0908850 | Msa0908920 | 0.896320 | 4.129933e-76 | -8.615850e-47 |
| Msa0908850 | Msa0908930 | 0.888837 | 4.142861e-73 | -8.615850e-47 |
| Msa0908850 | Msa0919990 | 0.836163 | 1.099192e-56 | -8.615850e-47 |
| Msa0908850 | Msa0920060 | 0.885484 | 7.815623e-72 | -8.615850e-47 |
| Msa0908850 | Msa0944900 | 0.907079 | 7.463784e-81 | -8.615850e-47 |
| Msa0908850 | Msa0944920 | 0.984640 | 3.763783e-161 | -8.615850e-47 |
| Msa0908850 | Msa0944930 | 0.877769 | 4.816045e-69 | -8.615850e-47 |
| Msa0908850 | Msa0944940 | 0.910719 | 1.366872e-82 | -8.615850e-47 |
| Msa0908850 | Msa0944950 | 0.803196 | 3.911921e-49 | -8.615850e-47 |
| Msa0908850 | Msa0944990 | 0.871442 | 6.814948e-67 | -8.615850e-47 |
| Msa0908850 | Msa0983130 | 0.816507 | 5.336191e-52 | -8.615850e-47 |
| Msa0908850 | Msa0983170 | 0.897736 | 1.052243e-76 | -8.615850e-47 |
| Msa0908850 | Msa0983180 | 0.879836 | 9.001663e-70 | -8.615850e-47 |
| Msa0908850 | Msa0983190 | 0.989889 | 4.214427e-180 | -8.615850e-47 |
| Msa0908850 | Msa0983210 | 0.893477 | 6.061749e-75 | -8.615850e-47 |
| Msa0908850 | Msa0983220 | 0.854478 | 1.198575e-61 | -8.615850e-47 |
| Msa0908850 | Msa0983230 | 0.845314 | 4.388132e-59 | -8.615850e-47 |
| Msa0908850 | Msa0983260 | 0.874624 | 5.837864e-68 | -8.615850e-47 |
| Msa0908850 | Msa0983300 | 0.910692 | 1.409537e-82 | -8.615850e-47 |
| Msa0908850 | Msa0983310 | 0.831309 | 1.795639e-55 | -8.615850e-47 |
| Msa0908850 | Msa0983320 | 0.870405 | 1.496401e-66 | -8.615850e-47 |
| Msa0908850 | Msa0983350 | 0.868766 | 5.114377e-66 | -8.615850e-47 |
| Msa0908850 | Msa0983360 | 0.841376 | 4.933532e-58 | -8.615850e-47 |
| Msa0908850 | Msa0983460 | 0.944071 | 3.814948e-103 | -8.615850e-47 |
| Msa0908850 | Msa0983490 | 0.862151 | 6.209282e-64 | -8.615850e-47 |
| Msa0908850 | Msa0983500 | 0.902982 | 5.548360e-79 | -8.615850e-47 |
| Msa0908850 | Msa0983520 | 0.984602 | 4.861893e-161 | -8.615850e-47 |
| Msa0908850 | Msa0983530 | 0.877600 | 5.517807e-69 | -8.615850e-47 |
| Msa0908850 | Msa0983540 | 0.909049 | 8.745635e-82 | -8.615850e-47 |
| Msa0908850 | Msa0983550 | 0.820326 | 7.276456e-53 | -8.615850e-47 |
| Msa0908850 | Msa1135470 | -0.801148 | 1.032222e-48 | -8.615850e-47 |
| Msa0908850 | Msa1228620 | 0.902425 | 9.825437e-79 | -8.615850e-47 |
| Msa0908850 | Msa1357890 | -0.804068 | 2.579131e-49 | -8.615850e-47 |
| Msa0908850 | Msa1391960 | 0.830897 | 2.266921e-55 | -8.615850e-47 |
| Msa0908850 | Msa1391970 | 0.867382 | 1.426372e-65 | -8.615850e-47 |
| Msa0908850 | Msa1392010 | 0.870907 | 1.023294e-66 | -8.615850e-47 |
| Msa0908850 | Msa1392020 | 0.813411 | 2.595154e-51 | -8.615850e-47 |
| Msa0908850 | Msa1392030 | 0.916022 | 2.934162e-85 | -8.615850e-47 |
| Msa0908850 | Msa1392120 | 0.940630 | 1.678086e-100 | -8.615850e-47 |
| Msa0908850 | Msa1392160 | 0.901733 | 1.987194e-78 | -8.615850e-47 |
| Msa0908850 | Msa1398090 | -0.804489 | 2.108209e-49 | -8.615850e-47 |
| Msa0908850 | Msa1407600 | -0.801535 | 8.600818e-49 | -8.615850e-47 |
| Msa0908850 | Msa1436930 | 0.834492 | 2.904669e-56 | -8.615850e-47 |
| Msa0908850 | Msa1453860 | 0.810008 | 1.427061e-50 | -8.615850e-47 |
| Msa0908850 | Msa1453870 | 0.809737 | 1.632432e-50 | -8.615850e-47 |
| Msa0908850 | Msa1466540 | -0.809001 | 2.348030e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0908850 | MtrunA17_Chr7g0231291 | 55.512 | 254 | 43 | 2 | 1 | 184 | 72 | 325 | 1.08e-67 | 213 |
| Msa0908850 | MtrunA17_Chr6g0457361 | 64.706 | 204 | 44 | 2 | 1 | 176 | 43 | 246 | 1.45e-66 | 206 |
| Msa0908850 | MtrunA17_MTg0491291 | 56.098 | 246 | 38 | 2 | 1 | 176 | 72 | 317 | 3.62e-63 | 205 |
| Msa0908850 | MtrunA17_Chr8g0336151 | 91.228 | 57 | 5 | 0 | 1 | 57 | 33 | 89 | 4.17e-18 | 77.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0908850 | ATMG01360.1 | 73.214 | 112 | 30 | 0 | 65 | 176 | 206 | 317 | 7.94e-46 | 160 |
| Msa0908850 | ATMG01360.1 | 96.970 | 66 | 2 | 0 | 1 | 66 | 72 | 137 | 9.69e-25 | 102 |
Find 67 sgRNAs with CRISPR-Local
Find 295 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTACTAAGGCTGAGCTTAAT+AGG | 0.252415 | 6_2:+9938423 | None:intergenic |
| AAAGAGATGCTGGTATAATA+TGG | 0.262512 | 6_2:+9938073 | None:intergenic |
| TGGTCTGTTCCGATTCTTAT+AGG | 0.288026 | 6_2:-9938515 | Msa0908850:CDS |
| GTAGAGGTGGGTAGCGGCAC+TGG | 0.337368 | 6_2:-9938404 | Msa0908850:CDS |
| TCAATGCTCTCAGCTGAAAC+AGG | 0.350070 | 6_2:+9936053 | None:intergenic |
| ATGATCAGTATAGGTGTTCT+TGG | 0.354020 | 6_2:-9937930 | Msa0908850:CDS |
| GATTAAATAATATTTCATTC+TGG | 0.357498 | 6_2:-9938469 | Msa0908850:CDS |
| CAGCATCTCTTTCGGTTCTT+CGG | 0.366259 | 6_2:-9938062 | Msa0908850:CDS |
| TTTCGGGAAAACCGGTCTTC+GGG | 0.368369 | 6_2:-9937974 | Msa0908850:CDS |
| TGATAGGTGGATCTGGTAAT+TGG | 0.385519 | 6_2:-9938535 | Msa0908850:CDS |
| ATGGCTGGTAATACCACTTA+AGG | 0.386899 | 6_2:+9938364 | None:intergenic |
| ATACCGGATCCAGGCAGAAT+TGG | 0.414851 | 6_2:+9938020 | None:intergenic |
| GAATAGCTGATCGAGCTCTT+TGG | 0.419815 | 6_2:+9936142 | None:intergenic |
| AAACCGGTCTTCGGGTATCT+AGG | 0.425517 | 6_2:-9937966 | Msa0908850:CDS |
| TATTATACCAGCATCTCTTT+CGG | 0.426497 | 6_2:-9938070 | Msa0908850:CDS |
| ATGGTTATGCCGGCGATGAT+AGG | 0.429615 | 6_2:-9938551 | Msa0908850:CDS |
| GGCACCTCTCTTCCACAGCT+TGG | 0.439450 | 6_2:-9936023 | Msa0908850:CDS |
| AAGAGATGCTGGTATAATAT+GGG | 0.446102 | 6_2:+9938074 | None:intergenic |
| CCGGCGATGATAGGTGGATC+TGG | 0.498305 | 6_2:-9938542 | Msa0908850:CDS |
| GGGTAGCGGCACTGGGTGGA+CGG | 0.500197 | 6_2:-9938396 | Msa0908850:CDS |
| ATTCCAATTCTGCCTGGATC+CGG | 0.502252 | 6_2:-9938023 | Msa0908850:CDS |
| CGAAGAACCGAAAGAGATGC+TGG | 0.508958 | 6_2:+9938063 | None:intergenic |
| AGCTGTGGAAGAGAGGTGCC+AGG | 0.509406 | 6_2:+9936026 | None:intergenic |
| AAGAACACCTATACTGATCA+TGG | 0.511099 | 6_2:+9937932 | None:intergenic |
| ACGAGAGCAAGAAAAGGAAA+TGG | 0.514791 | 6_2:-9936530 | Msa0908850:CDS |
| CAGCTTGGCACGTTTAAAGA+AGG | 0.514988 | 6_2:-9936008 | Msa0908850:CDS |
| GTTTATGCCATGATCAGTAT+AGG | 0.516195 | 6_2:-9937939 | Msa0908850:CDS |
| GCTGAGAGCATTGATTCCCC+TGG | 0.519250 | 6_2:-9936044 | Msa0908850:CDS |
| TCCAGCACGAGAGCAAGAAA+AGG | 0.523770 | 6_2:-9936536 | Msa0908850:intron |
| AATCGTGGAAATGCCATGTC+AGG | 0.525327 | 6_2:+9938488 | None:intergenic |
| TGGCTGGTAATACCACTTAA+GGG | 0.525667 | 6_2:+9938365 | None:intergenic |
| TCAGGTGCACCTATAAGAAT+CGG | 0.526034 | 6_2:+9938506 | None:intergenic |
| TGACTTATGATACCGGATCC+AGG | 0.526443 | 6_2:+9938011 | None:intergenic |
| GCCGCTACCCACCTCTACTA+AGG | 0.532636 | 6_2:+9938409 | None:intergenic |
| GTGTATATTCCAATTCTGCC+TGG | 0.541279 | 6_2:-9938029 | Msa0908850:CDS |
| TCTTTAAACGTGCCAAGCTG+TGG | 0.543459 | 6_2:+9936011 | None:intergenic |
| AAGCTCAGCCTTAGTAGAGG+TGG | 0.544486 | 6_2:-9938417 | Msa0908850:CDS |
| AATAGGAGCAAGAGACTTGG+TGG | 0.546475 | 6_2:+9938440 | None:intergenic |
| CTTAATAGGAGCAAGAGACT+TGG | 0.554057 | 6_2:+9938437 | None:intergenic |
| GGTCTTCGGGTATCTAGGCA+TGG | 0.558047 | 6_2:-9937961 | Msa0908850:CDS |
| GGTTGTATTAAAGTTTCGAT+CGG | 0.559235 | 6_2:+9938124 | None:intergenic |
| AGGTGGGTAGCGGCACTGGG+TGG | 0.559946 | 6_2:-9938400 | Msa0908850:CDS |
| ACGGTCTATCCGCCCTTAAG+TGG | 0.559954 | 6_2:-9938377 | Msa0908850:intron |
| TCTTATAGGTGCACCTGACA+TGG | 0.563347 | 6_2:-9938501 | Msa0908850:CDS |
| GTTATGCCGGCGATGATAGG+TGG | 0.574785 | 6_2:-9938548 | Msa0908850:CDS |
| AACGATATGACTTATGATAC+CGG | 0.575183 | 6_2:+9938004 | None:intergenic |
| AGAATTGGAATATACACCTC+TGG | 0.578532 | 6_2:+9938035 | None:intergenic |
| TGATTCTATCTTGGTGAGAG+TGG | 0.578634 | 6_2:+9936484 | None:intergenic |
| GCCTTAGTAGAGGTGGGTAG+CGG | 0.578884 | 6_2:-9938410 | Msa0908850:CDS |
| ATGTGACCATGATTCTATCT+TGG | 0.581106 | 6_2:+9936475 | None:intergenic |
| CCAGATCCACCTATCATCGC+CGG | 0.586159 | 6_2:+9938542 | None:intergenic |
| CGTGCCAAGCTGTGGAAGAG+AGG | 0.588149 | 6_2:+9936019 | None:intergenic |
| AGCTCAGCCTTAGTAGAGGT+GGG | 0.588345 | 6_2:-9938416 | Msa0908850:CDS |
| ATGCCTAGATACCCGAAGAC+CGG | 0.590186 | 6_2:+9937963 | None:intergenic |
| AATGAAATATTATTTAATCG+TGG | 0.593102 | 6_2:+9938473 | None:intergenic |
| CTCTCACCAAGATAGAATCA+TGG | 0.597303 | 6_2:-9936481 | Msa0908850:CDS |
| TCGGTTCTTCGGTCATCCAG+AGG | 0.598203 | 6_2:-9938051 | Msa0908850:CDS |
| CACTTTGTACACTTTAGTGT+AGG | 0.606083 | 6_2:+9935983 | None:intergenic |
| GCTGTGGAAGAGAGGTGCCA+GGG | 0.611856 | 6_2:+9936027 | None:intergenic |
| CAATGCTCTCAGCTGAAACA+GGG | 0.614847 | 6_2:+9936054 | None:intergenic |
| TGGCGTGACTTGAAGCTGCA+CGG | 0.616873 | 6_2:+9936504 | None:intergenic |
| AGAGATGCTGGTATAATATG+GGG | 0.649125 | 6_2:+9938075 | None:intergenic |
| CTGTGGAAGAGAGGTGCCAG+GGG | 0.658396 | 6_2:+9936028 | None:intergenic |
| ATTAAGCTCAGCCTTAGTAG+AGG | 0.672337 | 6_2:-9938420 | Msa0908850:CDS |
| TGATCGAGCTCTTTGGTACG+CGG | 0.689398 | 6_2:+9936149 | None:intergenic |
| CTACACTAAAGTGTACAAAG+TGG | 0.700982 | 6_2:-9935982 | Msa0908850:CDS |
| CTGGTAATACCACTTAAGGG+CGG | 0.736789 | 6_2:+9938368 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAATTTAATTTAAATTAAA+TGG | + | chr6_2:9938346-9938365 | None:intergenic | 0.0% |
| !! | TTAAATTAAATTTATTTAAA+AGG | - | chr6_2:9938352-9938371 | Msa0908850:intron | 0.0% |
| !! | AATGAAATATTATTTAATCG+TGG | + | chr6_2:9936058-9936077 | None:intergenic | 15.0% |
| !! | GATTAAATAATATTTCATTC+TGG | - | chr6_2:9936059-9936078 | Msa0908850:CDS | 15.0% |
| !! | AAAATTGATAGAACCTAAAA+TGG | + | chr6_2:9936245-9936264 | None:intergenic | 20.0% |
| !!! | TAAATATTTTAATTCCTGTG+GGG | + | chr6_2:9936714-9936733 | None:intergenic | 20.0% |
| !!! | CTAAATATTTTAATTCCTGT+GGG | + | chr6_2:9936715-9936734 | None:intergenic | 20.0% |
| !!! | ACTAAATATTTTAATTCCTG+TGG | + | chr6_2:9936716-9936735 | None:intergenic | 20.0% |
| !! | CAGGAATTAAAATATTTAGT+TGG | - | chr6_2:9936716-9936735 | Msa0908850:intron | 20.0% |
| !!! | ACATTTTTAAAAGTTCTGTT+AGG | + | chr6_2:9937387-9937406 | None:intergenic | 20.0% |
| !!! | TAACAGAACTTTTAAAAATG+TGG | - | chr6_2:9937386-9937405 | Msa0908850:intron | 20.0% |
| !!! | AACAGAACTTTTAAAAATGT+GGG | - | chr6_2:9937387-9937406 | Msa0908850:intron | 20.0% |
| !!! | ATATATCTAGTTTATAGAAG+CGG | - | chr6_2:9938083-9938102 | Msa0908850:CDS | 20.0% |
| !! | ATAAACTAAATAAATTGGGT+GGG | + | chr6_2:9938304-9938323 | None:intergenic | 20.0% |
| !!! | ACCCAATTTATTTAGTTTAT+GGG | - | chr6_2:9938304-9938323 | Msa0908850:intron | 20.0% |
| !! | TCCCATAAACTAAATAAATT+GGG | + | chr6_2:9938308-9938327 | None:intergenic | 20.0% |
| ! | TCTACATGATACTTATTATG+TGG | - | chr6_2:9936867-9936886 | Msa0908850:intron | 25.0% |
| ! | TTTCCATTATGTACTTTCTA+TGG | - | chr6_2:9936897-9936916 | Msa0908850:intron | 25.0% |
| ! | TTCCATTATGTACTTTCTAT+GGG | - | chr6_2:9936898-9936917 | Msa0908850:intron | 25.0% |
| !!! | CATTTTTGGATCACTTTTTT+CGG | - | chr6_2:9937006-9937025 | Msa0908850:intron | 25.0% |
| !!! | ATTTTTGGATCACTTTTTTC+GGG | - | chr6_2:9937007-9937026 | Msa0908850:intron | 25.0% |
| ! | GCTTTCTTAACTCTTAAATT+AGG | + | chr6_2:9937446-9937465 | None:intergenic | 25.0% |
| ! | CAAATTTCCAAATTTAACTC+AGG | + | chr6_2:9937523-9937542 | None:intergenic | 25.0% |
| ! | TTCATCAAATCAAATATAGG+TGG | + | chr6_2:9937620-9937639 | None:intergenic | 25.0% |
| ! | TGCTTCATCAAATCAAATAT+AGG | + | chr6_2:9937623-9937642 | None:intergenic | 25.0% |
| ! | AAAAAAAATTGCTTCAGTGA+TGG | + | chr6_2:9937647-9937666 | None:intergenic | 25.0% |
| ! | CATAAACTAAATAAATTGGG+TGG | + | chr6_2:9938305-9938324 | None:intergenic | 25.0% |
| !! | CACCCAATTTATTTAGTTTA+TGG | - | chr6_2:9938303-9938322 | Msa0908850:intron | 25.0% |
| ! | CTCCCATAAACTAAATAAAT+TGG | + | chr6_2:9938309-9938328 | None:intergenic | 25.0% |
| !!! | TTATGCTCTTTTTTTTCTTC+CGG | + | chr6_2:9938433-9938452 | None:intergenic | 25.0% |
| !! | GAAGAAAAAAAAGAGCATAA+AGG | - | chr6_2:9938433-9938452 | Msa0908850:CDS | 25.0% |
| !! | ATTTCTAGTCTTCATCTATC+TGG | - | chr6_2:9936211-9936230 | Msa0908850:intron | 30.0% |
| GGTTGTATTAAAGTTTCGAT+CGG | + | chr6_2:9936407-9936426 | None:intergenic | 30.0% | |
| AAGAGATGCTGGTATAATAT+GGG | + | chr6_2:9936457-9936476 | None:intergenic | 30.0% | |
| AAAGAGATGCTGGTATAATA+TGG | + | chr6_2:9936458-9936477 | None:intergenic | 30.0% | |
| TATTATACCAGCATCTCTTT+CGG | - | chr6_2:9936458-9936477 | Msa0908850:intron | 30.0% | |
| AACGATATGACTTATGATAC+CGG | + | chr6_2:9936527-9936546 | None:intergenic | 30.0% | |
| ! | TCATATCGTTTCGACTTTTT+CGG | - | chr6_2:9936537-9936556 | Msa0908850:intron | 30.0% |
| ! | TGTTCTTGGATTTCTTGTTT+GGG | - | chr6_2:9936612-9936631 | Msa0908850:intron | 30.0% |
| ! | TTCATCTTTTTGTTCACCAT+AGG | - | chr6_2:9936799-9936818 | Msa0908850:intron | 30.0% |
| TCCTGCAAATAAAGCAAAAA+CGG | + | chr6_2:9936926-9936945 | None:intergenic | 30.0% | |
| TATTTGCAGGATTTCACTAT+TGG | - | chr6_2:9936935-9936954 | Msa0908850:intron | 30.0% | |
| ATTTGCAGGATTTCACTATT+GGG | - | chr6_2:9936936-9936955 | Msa0908850:intron | 30.0% | |
| ! | CTTTAGGTCAAATCCATTTT+TGG | - | chr6_2:9936992-9937011 | Msa0908850:intron | 30.0% |
| CGAAAAAAGTGATCCAAAAA+TGG | + | chr6_2:9937008-9937027 | None:intergenic | 30.0% | |
| !!! | TTTTTGGATCACTTTTTTCG+GGG | - | chr6_2:9937008-9937027 | Msa0908850:intron | 30.0% |
| CAGTGGAAATAACATAACAA+GGG | - | chr6_2:9937200-9937219 | Msa0908850:intron | 30.0% | |
| AAGCTATGTGAAGTAAAAGA+AGG | - | chr6_2:9937332-9937351 | Msa0908850:intron | 30.0% | |
| GAAGTAAAAGAAGGAAGAAA+AGG | - | chr6_2:9937341-9937360 | Msa0908850:intron | 30.0% | |
| !! | AGCTATTCTATTTTTCAGTC+CGG | - | chr6_2:9938401-9938420 | Msa0908850:CDS | 30.0% |
| ! | TCTGGTGTTTCATCCATTTT+AGG | - | chr6_2:9936229-9936248 | Msa0908850:intron | 35.0% |
| CCGGAAGTGATAATAAAAGT+GGG | + | chr6_2:9936354-9936373 | None:intergenic | 35.0% | |
| !! | CCCACTTTTATTATCACTTC+CGG | - | chr6_2:9936351-9936370 | Msa0908850:intron | 35.0% |
| ACCGGAAGTGATAATAAAAG+TGG | + | chr6_2:9936355-9936374 | None:intergenic | 35.0% | |
| TTTATTATCACTTCCGGTAC+TGG | - | chr6_2:9936357-9936376 | Msa0908850:intron | 35.0% | |
| AGAGATGCTGGTATAATATG+GGG | + | chr6_2:9936456-9936475 | None:intergenic | 35.0% | |
| AGAATTGGAATATACACCTC+TGG | + | chr6_2:9936496-9936515 | None:intergenic | 35.0% | |
| !! | CATATCGTTTCGACTTTTTC+GGG | - | chr6_2:9936538-9936557 | Msa0908850:intron | 35.0% |
| GTTTATGCCATGATCAGTAT+AGG | - | chr6_2:9936589-9936608 | Msa0908850:intron | 35.0% | |
| AAGAACACCTATACTGATCA+TGG | + | chr6_2:9936599-9936618 | None:intergenic | 35.0% | |
| ATGATCAGTATAGGTGTTCT+TGG | - | chr6_2:9936598-9936617 | Msa0908850:intron | 35.0% | |
| GTGTTCTTGGATTTCTTGTT+TGG | - | chr6_2:9936611-9936630 | Msa0908850:intron | 35.0% | |
| GCTCATCATATGTTTACTGT+GGG | - | chr6_2:9936634-9936653 | Msa0908850:intron | 35.0% | |
| AACCCTACAGCAAATAACAT+GGG | + | chr6_2:9936781-9936800 | None:intergenic | 35.0% | |
| ! | ATCTTTTTGTTCACCATAGG+AGG | - | chr6_2:9936802-9936821 | Msa0908850:intron | 35.0% |
| ! | CTCCCATAGAAAGTACATAA+TGG | + | chr6_2:9936903-9936922 | None:intergenic | 35.0% |
| TATTGGGTGGGTAAAATCTT+TGG | - | chr6_2:9936952-9936971 | Msa0908850:intron | 35.0% | |
| GGATTTGACCTAAAGTTTCA+GGG | + | chr6_2:9936987-9937006 | None:intergenic | 35.0% | |
| TGGATTTGACCTAAAGTTTC+AGG | + | chr6_2:9936988-9937007 | None:intergenic | 35.0% | |
| TAAGAAATGCATGGGAAAGA+GGG | + | chr6_2:9937043-9937062 | None:intergenic | 35.0% | |
| TCTTTCCCATGCATTTCTTA+GGG | - | chr6_2:9937043-9937062 | Msa0908850:intron | 35.0% | |
| ATAAGAGCCAAAACTGCTAA+GGG | + | chr6_2:9937127-9937146 | None:intergenic | 35.0% | |
| TATAAGAGCCAAAACTGCTA+AGG | + | chr6_2:9937128-9937147 | None:intergenic | 35.0% | |
| GCTCTTATATATCCGTAGTT+GGG | - | chr6_2:9937139-9937158 | Msa0908850:intron | 35.0% | |
| GCAGTGGAAATAACATAACA+AGG | - | chr6_2:9937199-9937218 | Msa0908850:intron | 35.0% | |
| TGAACAAAATTCAACCACAC+TGG | - | chr6_2:9937242-9937261 | Msa0908850:intron | 35.0% | |
| AAAATTCAACCACACTGGAA+TGG | - | chr6_2:9937247-9937266 | Msa0908850:intron | 35.0% | |
| ! | TCTCCAAAAGTATGAAAAGC+TGG | + | chr6_2:9937288-9937307 | None:intergenic | 35.0% |
| CTCTTAAATTAGGTCGAAGT+TGG | + | chr6_2:9937436-9937455 | None:intergenic | 35.0% | |
| TACAAGGCCTGAGTTAAATT+TGG | - | chr6_2:9937513-9937532 | Msa0908850:intron | 35.0% | |
| CAAATCAAATATAGGTGGCA+GGG | + | chr6_2:9937615-9937634 | None:intergenic | 35.0% | |
| TCAAATCAAATATAGGTGGC+AGG | + | chr6_2:9937616-9937635 | None:intergenic | 35.0% | |
| TTCGCTACTAACCTGTTAAA+TGG | + | chr6_2:9937685-9937704 | None:intergenic | 35.0% | |
| TTTAACAGGTTAGTAGCGAA+AGG | - | chr6_2:9937685-9937704 | Msa0908850:intron | 35.0% | |
| CTCTTCCCTTAACCTTAATA+GGG | + | chr6_2:9937750-9937769 | None:intergenic | 35.0% | |
| TGTTCAGAGAAGAGAATCAA+AGG | - | chr6_2:9937906-9937925 | Msa0908850:intron | 35.0% | |
| AGAAGAGAATCAAAGGTCAA+CGG | - | chr6_2:9937913-9937932 | Msa0908850:intron | 35.0% | |
| ATGTGACCATGATTCTATCT+TGG | + | chr6_2:9938056-9938075 | None:intergenic | 35.0% | |
| ! | TTTTTGACGATACTGACGAA+TGG | - | chr6_2:9938153-9938172 | Msa0908850:intron | 35.0% |
| ! | GGTGTCCTTTTATTATCTCT+TGG | + | chr6_2:9938237-9938256 | None:intergenic | 35.0% |
| ACTAAATAAATTGGGTGGGT+AGG | + | chr6_2:9938300-9938319 | None:intergenic | 35.0% | |
| !! | AGAGCATAAAGGTTTTTCGA+AGG | - | chr6_2:9938444-9938463 | Msa0908850:CDS | 35.0% |
| CACTTTGTACACTTTAGTGT+AGG | + | chr6_2:9938548-9938567 | None:intergenic | 35.0% | |
| CTACACTAAAGTGTACAAAG+TGG | - | chr6_2:9938546-9938565 | Msa0908850:CDS | 35.0% | |
| TGATAGGTGGATCTGGTAAT+TGG | - | chr6_2:9935993-9936012 | Msa0908850:CDS | 40.0% | |
| TGGTCTGTTCCGATTCTTAT+AGG | - | chr6_2:9936013-9936032 | Msa0908850:CDS | 40.0% | |
| TCAGGTGCACCTATAAGAAT+CGG | + | chr6_2:9936025-9936044 | None:intergenic | 40.0% | |
| CTTAATAGGAGCAAGAGACT+TGG | + | chr6_2:9936094-9936113 | None:intergenic | 40.0% | |
| CTACTAAGGCTGAGCTTAAT+AGG | + | chr6_2:9936108-9936127 | None:intergenic | 40.0% | |
| ATTAAGCTCAGCCTTAGTAG+AGG | - | chr6_2:9936108-9936127 | Msa0908850:CDS | 40.0% | |
| TGGCTGGTAATACCACTTAA+GGG | + | chr6_2:9936166-9936185 | None:intergenic | 40.0% | |
| ATGGCTGGTAATACCACTTA+AGG | + | chr6_2:9936167-9936186 | None:intergenic | 40.0% | |
| GATCTATGCATAGTCATTCC+AGG | + | chr6_2:9936295-9936314 | None:intergenic | 40.0% | |
| ATAGATCACCCCTATTTGTG+TGG | - | chr6_2:9936308-9936327 | Msa0908850:intron | 40.0% | |
| AAAAGTGGGAATGCTGTTAC+TGG | + | chr6_2:9936340-9936359 | None:intergenic | 40.0% | |
| GTGTATATTCCAATTCTGCC+TGG | - | chr6_2:9936499-9936518 | Msa0908850:CDS | 40.0% | |
| !!! | TTCGACTTTTTCGGGAAAAC+CGG | - | chr6_2:9936546-9936565 | Msa0908850:intron | 40.0% |
| GGCTCATCATATGTTTACTG+TGG | - | chr6_2:9936633-9936652 | Msa0908850:intron | 40.0% | |
| !! | ACACCCATGTTATTTGCTGT+AGG | - | chr6_2:9936775-9936794 | Msa0908850:intron | 40.0% |
| !! | CACCCATGTTATTTGCTGTA+GGG | - | chr6_2:9936776-9936795 | Msa0908850:intron | 40.0% |
| GAACCCTACAGCAAATAACA+TGG | + | chr6_2:9936782-9936801 | None:intergenic | 40.0% | |
| !!! | GCCGTTTTTGCTTTATTTGC+AGG | - | chr6_2:9936922-9936941 | Msa0908850:intron | 40.0% |
| CTAAGAAATGCATGGGAAAG+AGG | + | chr6_2:9937044-9937063 | None:intergenic | 40.0% | |
| CTCTTTCCCATGCATTTCTT+AGG | - | chr6_2:9937042-9937061 | Msa0908850:intron | 40.0% | |
| GAAAGCCCTAAGAAATGCAT+GGG | + | chr6_2:9937051-9937070 | None:intergenic | 40.0% | |
| CATGCATTTCTTAGGGCTTT+CGG | - | chr6_2:9937050-9937069 | Msa0908850:intron | 40.0% | |
| ATGCATTTCTTAGGGCTTTC+GGG | - | chr6_2:9937051-9937070 | Msa0908850:intron | 40.0% | |
| GGCTCTTATATATCCGTAGT+TGG | - | chr6_2:9937138-9937157 | Msa0908850:intron | 40.0% | |
| GTAACAATCACTTCAAGCAG+TGG | - | chr6_2:9937183-9937202 | Msa0908850:intron | 40.0% | |
| ! | GAATTTTGTTCAACAGCCCA+AGG | + | chr6_2:9937234-9937253 | None:intergenic | 40.0% |
| ! | CCAAAAGTATGAAAAGCTGG+AGG | + | chr6_2:9937285-9937304 | None:intergenic | 40.0% |
| ! | CCTCCAGCTTTTCATACTTT+TGG | - | chr6_2:9937282-9937301 | Msa0908850:intron | 40.0% |
| GTTAGGTTCTTAGTAGCAGT+CGG | + | chr6_2:9937370-9937389 | None:intergenic | 40.0% | |
| AAAGCAAGCTCAGTTCAGAA+TGG | - | chr6_2:9937461-9937480 | Msa0908850:intron | 40.0% | |
| AGCAAGCCCTATTAAGGTTA+AGG | - | chr6_2:9937741-9937760 | Msa0908850:intron | 40.0% | |
| GCAAGCCCTATTAAGGTTAA+GGG | - | chr6_2:9937742-9937761 | Msa0908850:intron | 40.0% | |
| CCTCTTCCCTTAACCTTAAT+AGG | + | chr6_2:9937751-9937770 | None:intergenic | 40.0% | |
| CCTATTAAGGTTAAGGGAAG+AGG | - | chr6_2:9937748-9937767 | Msa0908850:intron | 40.0% | |
| ACGAGAGCAAGAAAAGGAAA+TGG | - | chr6_2:9937998-9938017 | Msa0908850:CDS | 40.0% | |
| TGATTCTATCTTGGTGAGAG+TGG | + | chr6_2:9938047-9938066 | None:intergenic | 40.0% | |
| CTCTCACCAAGATAGAATCA+TGG | - | chr6_2:9938047-9938066 | Msa0908850:CDS | 40.0% | |
| ACGGGCCAAGAGATAATAAA+AGG | - | chr6_2:9938229-9938248 | Msa0908850:intron | 40.0% | |
| ! | AGCTCTTTTTCTTGCTCTTC+TGG | + | chr6_2:9938258-9938277 | None:intergenic | 40.0% |
| TAAATTGGGTGGGTAGGATA+AGG | + | chr6_2:9938294-9938313 | None:intergenic | 40.0% | |
| TCTTATAGGTGCACCTGACA+TGG | - | chr6_2:9936027-9936046 | Msa0908850:CDS | 45.0% | |
| AATCGTGGAAATGCCATGTC+AGG | + | chr6_2:9936043-9936062 | None:intergenic | 45.0% | |
| AATAGGAGCAAGAGACTTGG+TGG | + | chr6_2:9936091-9936110 | None:intergenic | 45.0% | |
| CTGGTAATACCACTTAAGGG+CGG | + | chr6_2:9936163-9936182 | None:intergenic | 45.0% | |
| AGTGGTATTACCAGCCATTC+TGG | - | chr6_2:9936169-9936188 | Msa0908850:intron | 45.0% | |
| AATCAACTGCTCCTCCAGAA+TGG | + | chr6_2:9936186-9936205 | None:intergenic | 45.0% | |
| ACAACTATCTCCAACATGCG+TGG | - | chr6_2:9936268-9936287 | Msa0908850:intron | 45.0% | |
| TGGAACGGACCACACAAATA+GGG | + | chr6_2:9936320-9936339 | None:intergenic | 45.0% | |
| TGGGAATGCTGTTACTGGAA+CGG | + | chr6_2:9936335-9936354 | None:intergenic | 45.0% | |
| CAGCATCTCTTTCGGTTCTT+CGG | - | chr6_2:9936466-9936485 | Msa0908850:intron | 45.0% | |
| ATTCCAATTCTGCCTGGATC+CGG | - | chr6_2:9936505-9936524 | Msa0908850:CDS | 45.0% | |
| TGACTTATGATACCGGATCC+AGG | + | chr6_2:9936520-9936539 | None:intergenic | 45.0% | |
| !! | TTTTCGGGAAAACCGGTCTT+CGG | - | chr6_2:9936553-9936572 | Msa0908850:intron | 45.0% |
| AGCTATGATCATGGTAGCAG+CGG | + | chr6_2:9936689-9936708 | None:intergenic | 45.0% | |
| TTAGTTGGATCGCTACCATG+TGG | - | chr6_2:9936731-9936750 | Msa0908850:intron | 45.0% | |
| TAGTTGGATCGCTACCATGT+GGG | - | chr6_2:9936732-9936751 | Msa0908850:intron | 45.0% | |
| TATTCCAGTGAGTCCTCCTA+TGG | + | chr6_2:9936818-9936837 | None:intergenic | 45.0% | |
| GAATAGTCCCGGCAAATTCA+GGG | - | chr6_2:9936833-9936852 | Msa0908850:intron | 45.0% | |
| ATGTCTAGCCCTGAATTTGC+CGG | + | chr6_2:9936844-9936863 | None:intergenic | 45.0% | |
| TGCAGGATTTCACTATTGGG+TGG | - | chr6_2:9936939-9936958 | Msa0908850:intron | 45.0% | |
| GCAGGATTTCACTATTGGGT+GGG | - | chr6_2:9936940-9936959 | Msa0908850:intron | 45.0% | |
| GGGTGGGTAAAATCTTTGGT+CGG | - | chr6_2:9936956-9936975 | Msa0908850:intron | 45.0% | |
| CGGACATACCCTGAAACTTT+AGG | - | chr6_2:9936976-9936995 | Msa0908850:intron | 45.0% | |
| CGAAAGCCCTAAGAAATGCA+TGG | + | chr6_2:9937052-9937071 | None:intergenic | 45.0% | |
| GCGTAAGCATCTGGATAATC+TGG | + | chr6_2:9937093-9937112 | None:intergenic | 45.0% | |
| GATTATCCAGATGCTTACGC+TGG | - | chr6_2:9937093-9937112 | Msa0908850:intron | 45.0% | |
| ! | TGGAATGCCCTTAGCAGTTT+TGG | - | chr6_2:9937117-9937136 | Msa0908850:intron | 45.0% |
| GAAACGACGAATCCCAACTA+CGG | + | chr6_2:9937154-9937173 | None:intergenic | 45.0% | |
| TAACAAGGGCGAACATTCCT+TGG | - | chr6_2:9937214-9937233 | Msa0908850:intron | 45.0% | |
| AACAAGGGCGAACATTCCTT+GGG | - | chr6_2:9937215-9937234 | Msa0908850:intron | 45.0% | |
| TGGAGAACTTCCAGCTATCA+AGG | - | chr6_2:9937302-9937321 | Msa0908850:intron | 45.0% | |
| !! | CTTTTCGTCTCCTTGATAGC+TGG | + | chr6_2:9937315-9937334 | None:intergenic | 45.0% |
| GGTACTCAACTCTTCTTCGT+TGG | + | chr6_2:9937415-9937434 | None:intergenic | 45.0% | |
| GAATGGCTACTTACCAACAG+AGG | - | chr6_2:9937478-9937497 | Msa0908850:intron | 45.0% | |
| GAAATTTGATCGAGCTGAGC+CGG | - | chr6_2:9937535-9937554 | Msa0908850:intron | 45.0% | |
| CCTGTTAAATGGAGTTGAGC+TGG | + | chr6_2:9937674-9937693 | None:intergenic | 45.0% | |
| CCAGCTCAACTCCATTTAAC+AGG | - | chr6_2:9937671-9937690 | Msa0908850:intron | 45.0% | |
| CAGGTTAGTAGCGAAAGGTA+AGG | - | chr6_2:9937690-9937709 | Msa0908850:intron | 45.0% | |
| AGAAGGAGCAAGCCCTATTA+AGG | - | chr6_2:9937735-9937754 | Msa0908850:intron | 45.0% | |
| TCAAGGAAGCCGGAAAGAAA+GGG | - | chr6_2:9937801-9937820 | Msa0908850:intron | 45.0% | |
| GAAAGTCGAGCTGAGGAATA+CGG | - | chr6_2:9937846-9937865 | Msa0908850:intron | 45.0% | |
| TGAGGAATACGGAAGAGAAG+CGG | - | chr6_2:9937857-9937876 | Msa0908850:intron | 45.0% | |
| CTCTTCTCTGAACAGCTCTT+AGG | + | chr6_2:9937900-9937919 | None:intergenic | 45.0% | |
| AATCAAAGGTCAACGGCCAA+TGG | - | chr6_2:9937920-9937939 | Msa0908850:intron | 45.0% | |
| ! | TTTAAGATGAATCCGGGGGA+GGG | + | chr6_2:9937949-9937968 | None:intergenic | 45.0% |
| ! | TCGGTTTAAGATGAATCCGG+GGG | + | chr6_2:9937953-9937972 | None:intergenic | 45.0% |
| ! | GTCGGTTTAAGATGAATCCG+GGG | + | chr6_2:9937954-9937973 | None:intergenic | 45.0% |
| ! | GGTCGGTTTAAGATGAATCC+GGG | + | chr6_2:9937955-9937974 | None:intergenic | 45.0% |
| ! | CGGTCGGTTTAAGATGAATC+CGG | + | chr6_2:9937956-9937975 | None:intergenic | 45.0% |
| TGGATGTCATCTCGGCATAT+CGG | + | chr6_2:9937976-9937995 | None:intergenic | 45.0% | |
| TGGACTCTCATTGGTCAAAC+AGG | - | chr6_2:9938202-9938221 | Msa0908850:intron | 45.0% | |
| GAATAGCTGATCGAGCTCTT+TGG | + | chr6_2:9938389-9938408 | None:intergenic | 45.0% | |
| !!! | TTTTTTCTTCCGGCGTCAAC+CGG | + | chr6_2:9938423-9938442 | None:intergenic | 45.0% |
| CAATGCTCTCAGCTGAAACA+GGG | + | chr6_2:9938477-9938496 | None:intergenic | 45.0% | |
| TCAATGCTCTCAGCTGAAAC+AGG | + | chr6_2:9938478-9938497 | None:intergenic | 45.0% | |
| TCTTTAAACGTGCCAAGCTG+TGG | + | chr6_2:9938520-9938539 | None:intergenic | 45.0% | |
| CAGCTTGGCACGTTTAAAGA+AGG | - | chr6_2:9938520-9938539 | Msa0908850:CDS | 45.0% | |
| ATGGTTATGCCGGCGATGAT+AGG | - | chr6_2:9935977-9935996 | Msa0908850:CDS | 50.0% | |
| AAGCTCAGCCTTAGTAGAGG+TGG | - | chr6_2:9936111-9936130 | Msa0908850:CDS | 50.0% | |
| AGCTCAGCCTTAGTAGAGGT+GGG | - | chr6_2:9936112-9936131 | Msa0908850:CDS | 50.0% | |
| GGTATTACCAGCCATTCTGG+AGG | - | chr6_2:9936172-9936191 | Msa0908850:intron | 50.0% | |
| GGAACGGACCACACAAATAG+GGG | + | chr6_2:9936319-9936338 | None:intergenic | 50.0% | |
| CTGGAACGGACCACACAAAT+AGG | + | chr6_2:9936321-9936340 | None:intergenic | 50.0% | |
| !! | TTATCACTTCCGGTACTGGC+AGG | - | chr6_2:9936361-9936380 | Msa0908850:intron | 50.0% |
| !! | TATCACTTCCGGTACTGGCA+GGG | - | chr6_2:9936362-9936381 | Msa0908850:intron | 50.0% |
| ! | ACAACCTTTTCTGATCCCGC+AGG | - | chr6_2:9936421-9936440 | Msa0908850:intron | 50.0% |
| CGAAGAACCGAAAGAGATGC+TGG | + | chr6_2:9936468-9936487 | None:intergenic | 50.0% | |
| ATACCGGATCCAGGCAGAAT+TGG | + | chr6_2:9936511-9936530 | None:intergenic | 50.0% | |
| TTTCGGGAAAACCGGTCTTC+GGG | - | chr6_2:9936554-9936573 | Msa0908850:intron | 50.0% | |
| AAACCGGTCTTCGGGTATCT+AGG | - | chr6_2:9936562-9936581 | Msa0908850:intron | 50.0% | |
| ATGCCTAGATACCCGAAGAC+CGG | + | chr6_2:9936568-9936587 | None:intergenic | 50.0% | |
| TGTGGGGACAGCTATGATCA+TGG | + | chr6_2:9936698-9936717 | None:intergenic | 50.0% | |
| ATGATCATAGCTGTCCCCAC+AGG | - | chr6_2:9936697-9936716 | Msa0908850:intron | 50.0% | |
| AGTTGGATCGCTACCATGTG+GGG | - | chr6_2:9936733-9936752 | Msa0908850:intron | 50.0% | |
| TTGTATAGAACCCCCCCACA+TGG | + | chr6_2:9936749-9936768 | None:intergenic | 50.0% | |
| TTCACCATAGGAGGACTCAC+TGG | - | chr6_2:9936811-9936830 | Msa0908850:intron | 50.0% | |
| AGGACTCACTGGAATAGTCC+CGG | - | chr6_2:9936822-9936841 | Msa0908850:intron | 50.0% | |
| GGAATAGTCCCGGCAAATTC+AGG | - | chr6_2:9936832-9936851 | Msa0908850:intron | 50.0% | |
| TGTCTAGCCCTGAATTTGCC+GGG | + | chr6_2:9936843-9936862 | None:intergenic | 50.0% | |
| ! | GGATAATCTGGAATGCGACG+TGG | + | chr6_2:9937081-9937100 | None:intergenic | 50.0% |
| ATCCAGATGCTTACGCTGGA+TGG | - | chr6_2:9937097-9937116 | Msa0908850:intron | 50.0% | |
| TTCCATCCAGCGTAAGCATC+TGG | + | chr6_2:9937102-9937121 | None:intergenic | 50.0% | |
| TGGGATTCGTCGTTTCTTCG+TGG | - | chr6_2:9937158-9937177 | Msa0908850:intron | 50.0% | |
| TTCAACCACACTGGAATGGC+TGG | - | chr6_2:9937251-9937270 | Msa0908850:intron | 50.0% | |
| TTGTACCAGCCATTCCAGTG+TGG | + | chr6_2:9937259-9937278 | None:intergenic | 50.0% | |
| CTTACCAACAGAGGATAGCG+AGG | - | chr6_2:9937487-9937506 | Msa0908850:intron | 50.0% | |
| AGTACCTCGCTATCCTCTGT+TGG | + | chr6_2:9937494-9937513 | None:intergenic | 50.0% | |
| ! | GAGGATAGCGAGGTACTACA+AGG | - | chr6_2:9937497-9937516 | Msa0908850:intron | 50.0% |
| ATAGTCAGTAGGAGCAGCTC+CGG | + | chr6_2:9937557-9937576 | None:intergenic | 50.0% | |
| ! | CTGCTCCTACTGACTATGAC+TGG | - | chr6_2:9937560-9937579 | Msa0908850:intron | 50.0% |
| GCTGTCCAGTCATAGTCAGT+AGG | + | chr6_2:9937568-9937587 | None:intergenic | 50.0% | |
| TGACTATGACTGGACAGCAG+TGG | - | chr6_2:9937570-9937589 | Msa0908850:intron | 50.0% | |
| GGTAAGGCTTAATTCCCGAG+TGG | - | chr6_2:9937706-9937725 | Msa0908850:intron | 50.0% | |
| CTCAAGGAAGCCGGAAAGAA+AGG | - | chr6_2:9937800-9937819 | Msa0908850:intron | 50.0% | |
| GTCTTGAGGCCCTTTCTTTC+CGG | + | chr6_2:9937813-9937832 | None:intergenic | 50.0% | |
| AAAGGGCCTCAAGACAGCTT+CGG | - | chr6_2:9937818-9937837 | Msa0908850:intron | 50.0% | |
| ! | GTTTAAGATGAATCCGGGGG+AGG | + | chr6_2:9937950-9937969 | None:intergenic | 50.0% |
| TGTCATCTCGGCATATCGGT+CGG | + | chr6_2:9937972-9937991 | None:intergenic | 50.0% | |
| TCTCGTGCTGGATGTCATCT+CGG | + | chr6_2:9937984-9938003 | None:intergenic | 50.0% | |
| TCCAGCACGAGAGCAAGAAA+AGG | - | chr6_2:9937992-9938011 | Msa0908850:CDS | 50.0% | |
| ! | TCCTTTTCTTGCTCTCGTGC+TGG | + | chr6_2:9937996-9938015 | None:intergenic | 50.0% |
| CAATCGACACTGGTAGCCAT+CGG | - | chr6_2:9938111-9938130 | Msa0908850:CDS | 50.0% | |
| AATCGACACTGGTAGCCATC+GGG | - | chr6_2:9938112-9938131 | Msa0908850:CDS | 50.0% | |
| GAATCTGATGAGCTCCAGTC+TGG | - | chr6_2:9938182-9938201 | Msa0908850:intron | 50.0% | |
| TGACCAATGAGAGTCCAGAC+TGG | + | chr6_2:9938199-9938218 | None:intergenic | 50.0% | |
| CATTGGTCAAACAGGCGCAA+CGG | - | chr6_2:9938210-9938229 | Msa0908850:intron | 50.0% | |
| ATTGGTCAAACAGGCGCAAC+GGG | - | chr6_2:9938211-9938230 | Msa0908850:intron | 50.0% | |
| TGATCGAGCTCTTTGGTACG+CGG | + | chr6_2:9938382-9938401 | None:intergenic | 50.0% | |
| !! | TTTTTCAGTCCGGTTGACGC+CGG | - | chr6_2:9938411-9938430 | Msa0908850:CDS | 50.0% |
| GTTATGCCGGCGATGATAGG+TGG | - | chr6_2:9935980-9935999 | Msa0908850:CDS | 55.0% | |
| CCAGATCCACCTATCATCGC+CGG | + | chr6_2:9935989-9936008 | None:intergenic | 55.0% | |
| GCCTTAGTAGAGGTGGGTAG+CGG | - | chr6_2:9936118-9936137 | Msa0908850:CDS | 55.0% | |
| ACGGTCTATCCGCCCTTAAG+TGG | - | chr6_2:9936151-9936170 | Msa0908850:CDS | 55.0% | |
| AACTGCTCCTCCAGAATGGC+TGG | + | chr6_2:9936182-9936201 | None:intergenic | 55.0% | |
| ATCTCCAACATGCGTGGACC+TGG | - | chr6_2:9936274-9936293 | Msa0908850:intron | 55.0% | |
| CATTCCAGGTCCACGCATGT+TGG | + | chr6_2:9936281-9936300 | None:intergenic | 55.0% | |
| !! | ATCACTTCCGGTACTGGCAG+GGG | - | chr6_2:9936363-9936382 | Msa0908850:intron | 55.0% |
| GTAATTGCCCCTGCCAGTAC+CGG | + | chr6_2:9936373-9936392 | None:intergenic | 55.0% | |
| ! | ACCTTTTCTGATCCCGCAGG+AGG | - | chr6_2:9936424-9936443 | Msa0908850:intron | 55.0% |
| ! | CCTTTTCTGATCCCGCAGGA+GGG | - | chr6_2:9936425-9936444 | Msa0908850:intron | 55.0% |
| ! | CTTTTCTGATCCCGCAGGAG+GGG | - | chr6_2:9936426-9936445 | Msa0908850:intron | 55.0% |
| ! | TTTTCTGATCCCGCAGGAGG+GGG | - | chr6_2:9936427-9936446 | Msa0908850:intron | 55.0% |
| TCGGTTCTTCGGTCATCCAG+AGG | - | chr6_2:9936477-9936496 | Msa0908850:CDS | 55.0% | |
| GGTCTTCGGGTATCTAGGCA+TGG | - | chr6_2:9936567-9936586 | Msa0908850:intron | 55.0% | |
| TAGCAGCGGTGAAGTAGGCA+CGG | + | chr6_2:9936675-9936694 | None:intergenic | 55.0% | |
| CATGGTAGCAGCGGTGAAGT+AGG | + | chr6_2:9936680-9936699 | None:intergenic | 55.0% | |
| GTTGGATCGCTACCATGTGG+GGG | - | chr6_2:9936734-9936753 | Msa0908850:intron | 55.0% | |
| TTGGATCGCTACCATGTGGG+GGG | - | chr6_2:9936735-9936754 | Msa0908850:intron | 55.0% | |
| TTCCCGAGTGGACGAGAAGA+AGG | - | chr6_2:9937718-9937737 | Msa0908850:intron | 55.0% | |
| CTCCTTCTTCTCGTCCACTC+GGG | + | chr6_2:9937723-9937742 | None:intergenic | 55.0% | |
| GCTCCTTCTTCTCGTCCACT+CGG | + | chr6_2:9937724-9937743 | None:intergenic | 55.0% | |
| ! | CTAGCTACCGAGCTGACTCA+AGG | - | chr6_2:9937784-9937803 | Msa0908850:intron | 55.0% |
| CTGTTGCCGAAGCTGTCTTG+AGG | + | chr6_2:9937827-9937846 | None:intergenic | 55.0% | |
| GGCAACAGAAAGTCGAGCTG+AGG | - | chr6_2:9937839-9937858 | Msa0908850:intron | 55.0% | |
| CAAAGGTCAACGGCCAATGG+AGG | - | chr6_2:9937923-9937942 | Msa0908850:CDS | 55.0% | |
| TGGCGTGACTTGAAGCTGCA+CGG | + | chr6_2:9938027-9938046 | None:intergenic | 55.0% | |
| AGCGGAATGCCAATCGACAC+TGG | - | chr6_2:9938101-9938120 | Msa0908850:CDS | 55.0% | |
| !! | CGATGGCTACCAGTGTCGAT+TGG | + | chr6_2:9938113-9938132 | None:intergenic | 55.0% |
| GCAGCTGAACTCAATCCCGA+TGG | + | chr6_2:9938130-9938149 | None:intergenic | 55.0% | |
| GCTCCAGTCTGGACTCTCAT+TGG | - | chr6_2:9938193-9938212 | Msa0908850:intron | 55.0% | |
| !! | GCTGAGAGCATTGATTCCCC+TGG | - | chr6_2:9938484-9938503 | Msa0908850:CDS | 55.0% |
| CCGGCGATGATAGGTGGATC+TGG | - | chr6_2:9935986-9936005 | Msa0908850:CDS | 60.0% | |
| GCCGCTACCCACCTCTACTA+AGG | + | chr6_2:9936122-9936141 | None:intergenic | 60.0% | |
| ! | TAGAGGTGGGTAGCGGCACT+GGG | - | chr6_2:9936125-9936144 | Msa0908850:CDS | 60.0% |
| CCCTCCTGCGGGATCAGAAA+AGG | + | chr6_2:9936428-9936447 | None:intergenic | 60.0% | |
| AGCAGCGGTGAAGTAGGCAC+GGG | + | chr6_2:9936674-9936693 | None:intergenic | 60.0% | |
| TGGATCGCTACCATGTGGGG+GGG | - | chr6_2:9936736-9936755 | Msa0908850:intron | 60.0% | |
| CCGGCTTCCTTGAGTCAGCT+CGG | + | chr6_2:9937794-9937813 | None:intergenic | 60.0% | |
| ! | CCGAGCTGACTCAAGGAAGC+CGG | - | chr6_2:9937791-9937810 | Msa0908850:intron | 60.0% |
| !! | CTGTGGAAGAGAGGTGCCAG+GGG | + | chr6_2:9938503-9938522 | None:intergenic | 60.0% |
| !! | GCTGTGGAAGAGAGGTGCCA+GGG | + | chr6_2:9938504-9938523 | None:intergenic | 60.0% |
| !! | AGCTGTGGAAGAGAGGTGCC+AGG | + | chr6_2:9938505-9938524 | None:intergenic | 60.0% |
| GGCACCTCTCTTCCACAGCT+TGG | - | chr6_2:9938505-9938524 | Msa0908850:CDS | 60.0% | |
| CGTGCCAAGCTGTGGAAGAG+AGG | + | chr6_2:9938512-9938531 | None:intergenic | 60.0% | |
| ! | GTAGAGGTGGGTAGCGGCAC+TGG | - | chr6_2:9936124-9936143 | Msa0908850:CDS | 65.0% |
| TATGGGGTCTCCCCCTCCTG+CGG | + | chr6_2:9936440-9936459 | None:intergenic | 65.0% | |
| ! | AGGTGGGTAGCGGCACTGGG+TGG | - | chr6_2:9936128-9936147 | Msa0908850:CDS | 70.0% |
| ! | GGGTAGCGGCACTGGGTGGA+CGG | - | chr6_2:9936132-9936151 | Msa0908850:CDS | 70.0% |
| ATGGGGTCTCCCCCTCCTGC+GGG | + | chr6_2:9936439-9936458 | None:intergenic | 70.0% | |
| ATCCGGGGGAGGGCCTCCAT+TGG | + | chr6_2:9937939-9937958 | None:intergenic | 70.0% | |
| GGCCAATGGAGGCCCTCCCC+CGG | - | chr6_2:9937934-9937953 | Msa0908850:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 9935977 | 9938573 | 9935977 | ID=Msa0908850;Name=Msa0908850 |
| chr6_2 | mRNA | 9935977 | 9938573 | 9935977 | ID=Msa0908850-mRNA-1;Parent=Msa0908850;Name=Msa0908850-mRNA-1;_AED=0.27;_eAED=0.27;_QI=0|0|0|0.75|0|0|4|0|239 |
| chr6_2 | exon | 9938378 | 9938573 | 9938378 | ID=Msa0908850-mRNA-1:exon:2497;Parent=Msa0908850-mRNA-1 |
| chr6_2 | exon | 9937923 | 9938167 | 9937923 | ID=Msa0908850-mRNA-1:exon:2496;Parent=Msa0908850-mRNA-1 |
| chr6_2 | exon | 9936470 | 9936553 | 9936470 | ID=Msa0908850-mRNA-1:exon:2495;Parent=Msa0908850-mRNA-1 |
| chr6_2 | exon | 9935977 | 9936171 | 9935977 | ID=Msa0908850-mRNA-1:exon:2494;Parent=Msa0908850-mRNA-1 |
| chr6_2 | CDS | 9938378 | 9938573 | 9938378 | ID=Msa0908850-mRNA-1:cds;Parent=Msa0908850-mRNA-1 |
| chr6_2 | CDS | 9937923 | 9938167 | 9937923 | ID=Msa0908850-mRNA-1:cds;Parent=Msa0908850-mRNA-1 |
| chr6_2 | CDS | 9936470 | 9936553 | 9936470 | ID=Msa0908850-mRNA-1:cds;Parent=Msa0908850-mRNA-1 |
| chr6_2 | CDS | 9935977 | 9936171 | 9935977 | ID=Msa0908850-mRNA-1:cds;Parent=Msa0908850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
