Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0944920 | GEV11601.1 | 86.228 | 167 | 3 | 1 | 1 | 147 | 33 | 199 | 1.36e-88 | 277 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0944920 | sp|P08743|COX1_OENBE | 56.504 | 246 | 37 | 2 | 1 | 176 | 72 | 317 | 7.13e-63 | 207 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0026430 | Msa0944920 | -0.807020 | 6.198761e-50 | -8.615850e-47 |
| Msa0034970 | Msa0944920 | -0.824753 | 6.805628e-54 | -8.615850e-47 |
| Msa0054480 | Msa0944920 | -0.810667 | 1.028496e-50 | -8.615850e-47 |
| Msa0069500 | Msa0944920 | 0.843989 | 9.979776e-59 | -8.615850e-47 |
| Msa0069510 | Msa0944920 | 0.821654 | 3.598573e-53 | -8.615850e-47 |
| Msa0069520 | Msa0944920 | 0.805414 | 1.350743e-49 | -8.615850e-47 |
| Msa0697990 | Msa0944920 | 0.887548 | 1.295292e-72 | -8.615850e-47 |
| Msa0709160 | Msa0944920 | -0.822754 | 1.999950e-53 | -8.615850e-47 |
| Msa0721280 | Msa0944920 | -0.825448 | 4.663091e-54 | -8.615850e-47 |
| Msa0767220 | Msa0944920 | -0.803882 | 2.819972e-49 | -8.615850e-47 |
| Msa0159770 | Msa0944920 | -0.801879 | 7.312226e-49 | -8.615850e-47 |
| Msa0175840 | Msa0944920 | -0.813218 | 2.860651e-51 | -8.615850e-47 |
| Msa0205510 | Msa0944920 | -0.801643 | 8.172384e-49 | -8.615850e-47 |
| Msa0206010 | Msa0944920 | -0.802696 | 4.963299e-49 | -8.615850e-47 |
| Msa0220440 | Msa0944920 | -0.820313 | 7.328505e-53 | -8.615850e-47 |
| Msa0249100 | Msa0944920 | -0.801538 | 8.587379e-49 | -8.615850e-47 |
| Msa0253200 | Msa0944920 | -0.817730 | 2.833638e-52 | -8.615850e-47 |
| Msa0261720 | Msa0944920 | -0.811881 | 5.607254e-51 | -8.615850e-47 |
| Msa0271530 | Msa0944920 | -0.807562 | 4.757086e-50 | -8.615850e-47 |
| Msa0284520 | Msa0944920 | -0.801599 | 8.345099e-49 | -8.615850e-47 |
| Msa0292030 | Msa0944920 | -0.819707 | 1.008058e-52 | -8.615850e-47 |
| Msa0299580 | Msa0944920 | -0.801756 | 7.747907e-49 | -8.615850e-47 |
| Msa0319170 | Msa0944920 | -0.804459 | 2.138328e-49 | -8.615850e-47 |
| Msa0326110 | Msa0944920 | -0.811962 | 5.385293e-51 | -8.615850e-47 |
| Msa0337060 | Msa0944920 | -0.809008 | 2.339365e-50 | -8.615850e-47 |
| Msa0595640 | Msa0944920 | 0.800517 | 1.388667e-48 | -8.615850e-47 |
| Msa0601530 | Msa0944920 | -0.800908 | 1.155471e-48 | -8.615850e-47 |
| Msa0896750 | Msa0944920 | -0.801734 | 7.829390e-49 | -8.615850e-47 |
| Msa0908820 | Msa0944920 | 0.802986 | 4.324061e-49 | -8.615850e-47 |
| Msa0908830 | Msa0944920 | 0.920313 | 1.499308e-87 | -8.615850e-47 |
| Msa0908840 | Msa0944920 | 0.895868 | 6.367319e-76 | -8.615850e-47 |
| Msa0908850 | Msa0944920 | 0.984640 | 3.763783e-161 | -8.615850e-47 |
| Msa0908870 | Msa0944920 | 0.894011 | 3.681470e-75 | -8.615850e-47 |
| Msa0908920 | Msa0944920 | 0.907005 | 8.076822e-81 | -8.615850e-47 |
| Msa0908930 | Msa0944920 | 0.878275 | 3.202968e-69 | -8.615850e-47 |
| Msa0919990 | Msa0944920 | 0.822717 | 2.039683e-53 | -8.615850e-47 |
| Msa0920000 | Msa0944920 | 0.812887 | 3.381007e-51 | -8.615850e-47 |
| Msa0920060 | Msa0944920 | 0.879436 | 1.248155e-69 | -8.615850e-47 |
| Msa0923330 | Msa0944920 | -0.802102 | 6.578763e-49 | -8.615850e-47 |
| Msa0933100 | Msa0944920 | -0.807070 | 6.047699e-50 | -8.615850e-47 |
| Msa0944900 | Msa0944920 | 0.911788 | 4.088477e-83 | -8.615850e-47 |
| Msa0944920 | Msa0944930 | 0.894158 | 3.209013e-75 | -8.615850e-47 |
| Msa0944920 | Msa0944940 | 0.917432 | 5.345832e-86 | -8.615850e-47 |
| Msa0944920 | Msa0944950 | 0.802011 | 6.867927e-49 | -8.615850e-47 |
| Msa0944920 | Msa0944990 | 0.880544 | 5.028411e-70 | -8.615850e-47 |
| Msa0944920 | Msa0969520 | -0.801335 | 9.451890e-49 | -8.615850e-47 |
| Msa0944920 | Msa0983130 | 0.808003 | 3.833287e-50 | -8.615850e-47 |
| Msa0944920 | Msa0983170 | 0.905711 | 3.214250e-80 | -8.615850e-47 |
| Msa0944920 | Msa0983180 | 0.895133 | 1.279656e-75 | -8.615850e-47 |
| Msa0944920 | Msa0983190 | 0.992419 | 3.530778e-193 | -8.615850e-47 |
| Msa0944920 | Msa0983210 | 0.900072 | 1.055290e-77 | -8.615850e-47 |
| Msa0944920 | Msa0983220 | 0.865793 | 4.564050e-65 | -8.615850e-47 |
| Msa0944920 | Msa0983230 | 0.841342 | 5.036257e-58 | -8.615850e-47 |
| Msa0944920 | Msa0983260 | 0.882702 | 8.345355e-71 | -8.615850e-47 |
| Msa0944920 | Msa0983300 | 0.902274 | 1.146510e-78 | -8.615850e-47 |
| Msa0944920 | Msa0983310 | 0.837467 | 5.109840e-57 | -8.615850e-47 |
| Msa0944920 | Msa0983320 | 0.876843 | 1.011395e-68 | -8.615850e-47 |
| Msa0944920 | Msa0983350 | 0.879798 | 9.284551e-70 | -8.615850e-47 |
| Msa0944920 | Msa0983360 | 0.827815 | 1.270194e-54 | -8.615850e-47 |
| Msa0944920 | Msa0983460 | 0.931018 | 7.009404e-94 | -8.615850e-47 |
| Msa0944920 | Msa0983490 | 0.872763 | 2.476942e-67 | -8.615850e-47 |
| Msa0944920 | Msa0983500 | 0.911207 | 7.891063e-83 | -8.615850e-47 |
| Msa0944920 | Msa0983520 | 0.995545 | 2.369363e-217 | -8.615850e-47 |
| Msa0944920 | Msa0983530 | 0.893908 | 4.054694e-75 | -8.615850e-47 |
| Msa0944920 | Msa0983540 | 0.917102 | 7.990827e-86 | -8.615850e-47 |
| Msa0944920 | Msa0983550 | 0.818217 | 2.200070e-52 | -8.615850e-47 |
| Msa0944920 | Msa1023920 | -0.800409 | 1.461067e-48 | -8.615850e-47 |
| Msa0944920 | Msa1100050 | -0.805593 | 1.238754e-49 | -8.615850e-47 |
| Msa0944920 | Msa1107900 | -0.802594 | 5.209739e-49 | -8.615850e-47 |
| Msa0944920 | Msa1135470 | -0.809178 | 2.150943e-50 | -8.615850e-47 |
| Msa0944920 | Msa1193290 | -0.814721 | 1.333580e-51 | -8.615850e-47 |
| Msa0944920 | Msa1223870 | -0.804690 | 1.914172e-49 | -8.615850e-47 |
| Msa0944920 | Msa1224580 | 0.814390 | 1.578691e-51 | -8.615850e-47 |
| Msa0944920 | Msa1228620 | 0.913944 | 3.417191e-84 | -8.615850e-47 |
| Msa0944920 | Msa1263290 | 0.809406 | 1.921963e-50 | -8.615850e-47 |
| Msa0944920 | Msa1333730 | -0.805219 | 1.483858e-49 | -8.615850e-47 |
| Msa0944920 | Msa1353470 | -0.801670 | 8.070351e-49 | -8.615850e-47 |
| Msa0944920 | Msa1357890 | -0.828151 | 1.054232e-54 | -8.615850e-47 |
| Msa0944920 | Msa1391960 | 0.815155 | 1.068718e-51 | -8.615850e-47 |
| Msa0944920 | Msa1391970 | 0.878648 | 2.368360e-69 | -8.615850e-47 |
| Msa0944920 | Msa1392010 | 0.877489 | 6.031457e-69 | -8.615850e-47 |
| Msa0944920 | Msa1392020 | 0.820912 | 5.336450e-53 | -8.615850e-47 |
| Msa0944920 | Msa1392030 | 0.904974 | 6.999152e-80 | -8.615850e-47 |
| Msa0944920 | Msa1392120 | 0.927321 | 1.384064e-91 | -8.615850e-47 |
| Msa0944920 | Msa1392160 | 0.913462 | 5.985709e-84 | -8.615850e-47 |
| Msa0944920 | Msa1398090 | -0.827232 | 1.752825e-54 | -8.615850e-47 |
| Msa0944920 | Msa1407600 | -0.809658 | 1.697019e-50 | -8.615850e-47 |
| Msa0944920 | Msa1436930 | 0.814424 | 1.551596e-51 | -8.615850e-47 |
| Msa0944920 | Msa1453870 | 0.823013 | 1.740396e-53 | -8.615850e-47 |
| Msa0944920 | Msa1466540 | -0.819344 | 1.220084e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0944920 | MtrunA17_Chr7g0231291 | 55.512 | 254 | 43 | 2 | 1 | 184 | 72 | 325 | 1.08e-67 | 213 |
| Msa0944920 | MtrunA17_Chr6g0457361 | 64.706 | 204 | 44 | 2 | 1 | 176 | 43 | 246 | 1.45e-66 | 206 |
| Msa0944920 | MtrunA17_MTg0491291 | 56.098 | 246 | 38 | 2 | 1 | 176 | 72 | 317 | 3.62e-63 | 205 |
| Msa0944920 | MtrunA17_Chr8g0336151 | 91.228 | 57 | 5 | 0 | 1 | 57 | 33 | 89 | 4.17e-18 | 77.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0944920 | ATMG01360.1 | 73.214 | 112 | 30 | 0 | 65 | 176 | 206 | 317 | 7.94e-46 | 160 |
| Msa0944920 | ATMG01360.1 | 96.970 | 66 | 2 | 0 | 1 | 66 | 72 | 137 | 9.69e-25 | 102 |
Find 67 sgRNAs with CRISPR-Local
Find 295 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTACTAAGGCTGAGCTTAAT+AGG | 0.252415 | 6_3:-22372212 | None:intergenic |
| AAAGAGATGCTGGTATAATA+TGG | 0.262512 | 6_3:-22372562 | None:intergenic |
| TGGTCTGTTCCGATTCTTAT+AGG | 0.288026 | 6_3:+22372120 | Msa0944920:CDS |
| GTAGAGGTGGGTAGCGGCAC+TGG | 0.337368 | 6_3:+22372231 | Msa0944920:CDS |
| TCAATGCTCTCAGCTGAAAC+AGG | 0.350070 | 6_3:-22374582 | None:intergenic |
| ATGATCAGTATAGGTGTTCT+TGG | 0.354020 | 6_3:+22372705 | Msa0944920:CDS |
| GATTAAATAATATTTCATTC+TGG | 0.357498 | 6_3:+22372166 | Msa0944920:CDS |
| CAGCATCTCTTTCGGTTCTT+CGG | 0.366259 | 6_3:+22372573 | Msa0944920:CDS |
| TTTCGGGAAAACCGGTCTTC+GGG | 0.368369 | 6_3:+22372661 | Msa0944920:CDS |
| TGATAGGTGGATCTGGTAAT+TGG | 0.385519 | 6_3:+22372100 | Msa0944920:CDS |
| ATGGCTGGTAATACCACTTA+AGG | 0.386899 | 6_3:-22372271 | None:intergenic |
| ATACCGGATCCAGGCAGAAT+TGG | 0.414851 | 6_3:-22372615 | None:intergenic |
| GAATAGCTGATCGAGCTCTT+TGG | 0.419815 | 6_3:-22374493 | None:intergenic |
| AAACCGGTCTTCGGGTATCT+AGG | 0.425517 | 6_3:+22372669 | Msa0944920:CDS |
| TATTATACCAGCATCTCTTT+CGG | 0.426497 | 6_3:+22372565 | Msa0944920:CDS |
| ATGGTTATGCCGGCGATGAT+AGG | 0.429615 | 6_3:+22372084 | Msa0944920:CDS |
| GGCACCTCTCTTCCACAGCT+TGG | 0.439450 | 6_3:+22374612 | Msa0944920:CDS |
| AAGAGATGCTGGTATAATAT+GGG | 0.446102 | 6_3:-22372561 | None:intergenic |
| CCGGCGATGATAGGTGGATC+TGG | 0.498305 | 6_3:+22372093 | Msa0944920:CDS |
| GGGTAGCGGCACTGGGTGGA+CGG | 0.500197 | 6_3:+22372239 | Msa0944920:CDS |
| ATTCCAATTCTGCCTGGATC+CGG | 0.502252 | 6_3:+22372612 | Msa0944920:CDS |
| CGAAGAACCGAAAGAGATGC+TGG | 0.508958 | 6_3:-22372572 | None:intergenic |
| AGCTGTGGAAGAGAGGTGCC+AGG | 0.509406 | 6_3:-22374609 | None:intergenic |
| AAGAACACCTATACTGATCA+TGG | 0.511099 | 6_3:-22372703 | None:intergenic |
| ACGAGAGCAAGAAAAGGAAA+TGG | 0.514791 | 6_3:+22374105 | Msa0944920:CDS |
| CAGCTTGGCACGTTTAAAGA+AGG | 0.514988 | 6_3:+22374627 | Msa0944920:CDS |
| GTTTATGCCATGATCAGTAT+AGG | 0.516195 | 6_3:+22372696 | Msa0944920:CDS |
| GCTGAGAGCATTGATTCCCC+TGG | 0.519250 | 6_3:+22374591 | Msa0944920:CDS |
| TCCAGCACGAGAGCAAGAAA+AGG | 0.523770 | 6_3:+22374099 | Msa0944920:intron |
| AATCGTGGAAATGCCATGTC+AGG | 0.525327 | 6_3:-22372147 | None:intergenic |
| TGGCTGGTAATACCACTTAA+GGG | 0.525667 | 6_3:-22372270 | None:intergenic |
| TCAGGTGCACCTATAAGAAT+CGG | 0.526034 | 6_3:-22372129 | None:intergenic |
| TGACTTATGATACCGGATCC+AGG | 0.526443 | 6_3:-22372624 | None:intergenic |
| GCCGCTACCCACCTCTACTA+AGG | 0.532636 | 6_3:-22372226 | None:intergenic |
| GTGTATATTCCAATTCTGCC+TGG | 0.541279 | 6_3:+22372606 | Msa0944920:CDS |
| TCTTTAAACGTGCCAAGCTG+TGG | 0.543459 | 6_3:-22374624 | None:intergenic |
| AAGCTCAGCCTTAGTAGAGG+TGG | 0.544486 | 6_3:+22372218 | Msa0944920:CDS |
| AATAGGAGCAAGAGACTTGG+TGG | 0.546475 | 6_3:-22372195 | None:intergenic |
| CTTAATAGGAGCAAGAGACT+TGG | 0.554057 | 6_3:-22372198 | None:intergenic |
| GGTCTTCGGGTATCTAGGCA+TGG | 0.558047 | 6_3:+22372674 | Msa0944920:CDS |
| GGTTGTATTAAAGTTTCGAT+CGG | 0.559235 | 6_3:-22372511 | None:intergenic |
| AGGTGGGTAGCGGCACTGGG+TGG | 0.559946 | 6_3:+22372235 | Msa0944920:CDS |
| ACGGTCTATCCGCCCTTAAG+TGG | 0.559954 | 6_3:+22372258 | Msa0944920:CDS |
| TCTTATAGGTGCACCTGACA+TGG | 0.563347 | 6_3:+22372134 | Msa0944920:CDS |
| GTTATGCCGGCGATGATAGG+TGG | 0.574785 | 6_3:+22372087 | Msa0944920:CDS |
| AACGATATGACTTATGATAC+CGG | 0.575183 | 6_3:-22372631 | None:intergenic |
| AGAATTGGAATATACACCTC+TGG | 0.578532 | 6_3:-22372600 | None:intergenic |
| TGATTCTATCTTGGTGAGAG+TGG | 0.578634 | 6_3:-22374151 | None:intergenic |
| GCCTTAGTAGAGGTGGGTAG+CGG | 0.578884 | 6_3:+22372225 | Msa0944920:CDS |
| ATGTGACCATGATTCTATCT+TGG | 0.581106 | 6_3:-22374160 | None:intergenic |
| CCAGATCCACCTATCATCGC+CGG | 0.586159 | 6_3:-22372093 | None:intergenic |
| CGTGCCAAGCTGTGGAAGAG+AGG | 0.588149 | 6_3:-22374616 | None:intergenic |
| AGCTCAGCCTTAGTAGAGGT+GGG | 0.588345 | 6_3:+22372219 | Msa0944920:CDS |
| ATGCCTAGATACCCGAAGAC+CGG | 0.590186 | 6_3:-22372672 | None:intergenic |
| AATGAAATATTATTTAATCG+TGG | 0.593102 | 6_3:-22372162 | None:intergenic |
| CTCTCACCAAGATAGAATCA+TGG | 0.597303 | 6_3:+22374154 | Msa0944920:CDS |
| TCGGTTCTTCGGTCATCCAG+AGG | 0.598203 | 6_3:+22372584 | Msa0944920:CDS |
| CACTTTGTACACTTTAGTGT+AGG | 0.606083 | 6_3:-22374652 | None:intergenic |
| GCTGTGGAAGAGAGGTGCCA+GGG | 0.611856 | 6_3:-22374608 | None:intergenic |
| CAATGCTCTCAGCTGAAACA+GGG | 0.614847 | 6_3:-22374581 | None:intergenic |
| TGGCGTGACTTGAAGCTGCA+CGG | 0.616873 | 6_3:-22374131 | None:intergenic |
| AGAGATGCTGGTATAATATG+GGG | 0.649125 | 6_3:-22372560 | None:intergenic |
| CTGTGGAAGAGAGGTGCCAG+GGG | 0.658396 | 6_3:-22374607 | None:intergenic |
| ATTAAGCTCAGCCTTAGTAG+AGG | 0.672337 | 6_3:+22372215 | Msa0944920:CDS |
| TGATCGAGCTCTTTGGTACG+CGG | 0.689398 | 6_3:-22374486 | None:intergenic |
| CTACACTAAAGTGTACAAAG+TGG | 0.700982 | 6_3:+22374653 | Msa0944920:CDS |
| CTGGTAATACCACTTAAGGG+CGG | 0.736789 | 6_3:-22372267 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAATTTAATTTAAATTAAA+TGG | - | chr6_3:22374453-22374472 | None:intergenic | 0.0% |
| !! | TTAAATTAAATTTATTTAAA+AGG | + | chr6_3:22374459-22374478 | Msa0944920:intron | 0.0% |
| !! | AATGAAATATTATTTAATCG+TGG | - | chr6_3:22372165-22372184 | None:intergenic | 15.0% |
| !! | GATTAAATAATATTTCATTC+TGG | + | chr6_3:22372166-22372185 | Msa0944920:CDS | 15.0% |
| !! | AAAATTGATAGAACCTAAAA+TGG | - | chr6_3:22372352-22372371 | None:intergenic | 20.0% |
| !!! | TAAATATTTTAATTCCTGTG+GGG | - | chr6_3:22372821-22372840 | None:intergenic | 20.0% |
| !!! | CTAAATATTTTAATTCCTGT+GGG | - | chr6_3:22372822-22372841 | None:intergenic | 20.0% |
| !!! | ACTAAATATTTTAATTCCTG+TGG | - | chr6_3:22372823-22372842 | None:intergenic | 20.0% |
| !! | CAGGAATTAAAATATTTAGT+TGG | + | chr6_3:22372823-22372842 | Msa0944920:intron | 20.0% |
| !!! | ACATTTTTAAAAGTTCTGTT+AGG | - | chr6_3:22373494-22373513 | None:intergenic | 20.0% |
| !!! | TAACAGAACTTTTAAAAATG+TGG | + | chr6_3:22373493-22373512 | Msa0944920:intron | 20.0% |
| !!! | AACAGAACTTTTAAAAATGT+GGG | + | chr6_3:22373494-22373513 | Msa0944920:intron | 20.0% |
| !!! | ATATATCTAGTTTATAGAAG+CGG | + | chr6_3:22374190-22374209 | Msa0944920:intron | 20.0% |
| !! | ATAAACTAAATAAATTGGGT+GGG | - | chr6_3:22374411-22374430 | None:intergenic | 20.0% |
| !!! | ACCCAATTTATTTAGTTTAT+GGG | + | chr6_3:22374411-22374430 | Msa0944920:intron | 20.0% |
| !! | TCCCATAAACTAAATAAATT+GGG | - | chr6_3:22374415-22374434 | None:intergenic | 20.0% |
| ! | TCTACATGATACTTATTATG+TGG | + | chr6_3:22372974-22372993 | Msa0944920:intron | 25.0% |
| ! | TTTCCATTATGTACTTTCTA+TGG | + | chr6_3:22373004-22373023 | Msa0944920:intron | 25.0% |
| ! | TTCCATTATGTACTTTCTAT+GGG | + | chr6_3:22373005-22373024 | Msa0944920:intron | 25.0% |
| !!! | CATTTTTGGATCACTTTTTT+CGG | + | chr6_3:22373113-22373132 | Msa0944920:intron | 25.0% |
| !!! | ATTTTTGGATCACTTTTTTC+GGG | + | chr6_3:22373114-22373133 | Msa0944920:intron | 25.0% |
| ! | GCTTTCTTAACTCTTAAATT+AGG | - | chr6_3:22373553-22373572 | None:intergenic | 25.0% |
| ! | CAAATTTCCAAATTTAACTC+AGG | - | chr6_3:22373630-22373649 | None:intergenic | 25.0% |
| ! | TTCATCAAATCAAATATAGG+TGG | - | chr6_3:22373727-22373746 | None:intergenic | 25.0% |
| ! | TGCTTCATCAAATCAAATAT+AGG | - | chr6_3:22373730-22373749 | None:intergenic | 25.0% |
| ! | AAAAAAAATTGCTTCAGTGA+TGG | - | chr6_3:22373754-22373773 | None:intergenic | 25.0% |
| ! | CATAAACTAAATAAATTGGG+TGG | - | chr6_3:22374412-22374431 | None:intergenic | 25.0% |
| !! | CACCCAATTTATTTAGTTTA+TGG | + | chr6_3:22374410-22374429 | Msa0944920:intron | 25.0% |
| ! | CTCCCATAAACTAAATAAAT+TGG | - | chr6_3:22374416-22374435 | None:intergenic | 25.0% |
| !!! | TTATGCTCTTTTTTTTCTTC+CGG | - | chr6_3:22374540-22374559 | None:intergenic | 25.0% |
| !! | GAAGAAAAAAAAGAGCATAA+AGG | + | chr6_3:22374540-22374559 | Msa0944920:CDS | 25.0% |
| !! | ATTTCTAGTCTTCATCTATC+TGG | + | chr6_3:22372318-22372337 | Msa0944920:intron | 30.0% |
| GGTTGTATTAAAGTTTCGAT+CGG | - | chr6_3:22372514-22372533 | None:intergenic | 30.0% | |
| AAGAGATGCTGGTATAATAT+GGG | - | chr6_3:22372564-22372583 | None:intergenic | 30.0% | |
| AAAGAGATGCTGGTATAATA+TGG | - | chr6_3:22372565-22372584 | None:intergenic | 30.0% | |
| TATTATACCAGCATCTCTTT+CGG | + | chr6_3:22372565-22372584 | Msa0944920:CDS | 30.0% | |
| AACGATATGACTTATGATAC+CGG | - | chr6_3:22372634-22372653 | None:intergenic | 30.0% | |
| ! | TCATATCGTTTCGACTTTTT+CGG | + | chr6_3:22372644-22372663 | Msa0944920:CDS | 30.0% |
| ! | TGTTCTTGGATTTCTTGTTT+GGG | + | chr6_3:22372719-22372738 | Msa0944920:intron | 30.0% |
| ! | TTCATCTTTTTGTTCACCAT+AGG | + | chr6_3:22372906-22372925 | Msa0944920:intron | 30.0% |
| TCCTGCAAATAAAGCAAAAA+CGG | - | chr6_3:22373033-22373052 | None:intergenic | 30.0% | |
| TATTTGCAGGATTTCACTAT+TGG | + | chr6_3:22373042-22373061 | Msa0944920:intron | 30.0% | |
| ATTTGCAGGATTTCACTATT+GGG | + | chr6_3:22373043-22373062 | Msa0944920:intron | 30.0% | |
| ! | CTTTAGGTCAAATCCATTTT+TGG | + | chr6_3:22373099-22373118 | Msa0944920:intron | 30.0% |
| CGAAAAAAGTGATCCAAAAA+TGG | - | chr6_3:22373115-22373134 | None:intergenic | 30.0% | |
| !!! | TTTTTGGATCACTTTTTTCG+GGG | + | chr6_3:22373115-22373134 | Msa0944920:intron | 30.0% |
| CAGTGGAAATAACATAACAA+GGG | + | chr6_3:22373307-22373326 | Msa0944920:intron | 30.0% | |
| AAGCTATGTGAAGTAAAAGA+AGG | + | chr6_3:22373439-22373458 | Msa0944920:intron | 30.0% | |
| GAAGTAAAAGAAGGAAGAAA+AGG | + | chr6_3:22373448-22373467 | Msa0944920:intron | 30.0% | |
| !! | AGCTATTCTATTTTTCAGTC+CGG | + | chr6_3:22374508-22374527 | Msa0944920:CDS | 30.0% |
| ! | TCTGGTGTTTCATCCATTTT+AGG | + | chr6_3:22372336-22372355 | Msa0944920:intron | 35.0% |
| CCGGAAGTGATAATAAAAGT+GGG | - | chr6_3:22372461-22372480 | None:intergenic | 35.0% | |
| !! | CCCACTTTTATTATCACTTC+CGG | + | chr6_3:22372458-22372477 | Msa0944920:intron | 35.0% |
| ACCGGAAGTGATAATAAAAG+TGG | - | chr6_3:22372462-22372481 | None:intergenic | 35.0% | |
| TTTATTATCACTTCCGGTAC+TGG | + | chr6_3:22372464-22372483 | Msa0944920:intron | 35.0% | |
| AGAGATGCTGGTATAATATG+GGG | - | chr6_3:22372563-22372582 | None:intergenic | 35.0% | |
| AGAATTGGAATATACACCTC+TGG | - | chr6_3:22372603-22372622 | None:intergenic | 35.0% | |
| !! | CATATCGTTTCGACTTTTTC+GGG | + | chr6_3:22372645-22372664 | Msa0944920:CDS | 35.0% |
| GTTTATGCCATGATCAGTAT+AGG | + | chr6_3:22372696-22372715 | Msa0944920:CDS | 35.0% | |
| AAGAACACCTATACTGATCA+TGG | - | chr6_3:22372706-22372725 | None:intergenic | 35.0% | |
| ATGATCAGTATAGGTGTTCT+TGG | + | chr6_3:22372705-22372724 | Msa0944920:CDS | 35.0% | |
| GTGTTCTTGGATTTCTTGTT+TGG | + | chr6_3:22372718-22372737 | Msa0944920:intron | 35.0% | |
| GCTCATCATATGTTTACTGT+GGG | + | chr6_3:22372741-22372760 | Msa0944920:intron | 35.0% | |
| AACCCTACAGCAAATAACAT+GGG | - | chr6_3:22372888-22372907 | None:intergenic | 35.0% | |
| ! | ATCTTTTTGTTCACCATAGG+AGG | + | chr6_3:22372909-22372928 | Msa0944920:intron | 35.0% |
| ! | CTCCCATAGAAAGTACATAA+TGG | - | chr6_3:22373010-22373029 | None:intergenic | 35.0% |
| TATTGGGTGGGTAAAATCTT+TGG | + | chr6_3:22373059-22373078 | Msa0944920:intron | 35.0% | |
| GGATTTGACCTAAAGTTTCA+GGG | - | chr6_3:22373094-22373113 | None:intergenic | 35.0% | |
| TGGATTTGACCTAAAGTTTC+AGG | - | chr6_3:22373095-22373114 | None:intergenic | 35.0% | |
| TAAGAAATGCATGGGAAAGA+GGG | - | chr6_3:22373150-22373169 | None:intergenic | 35.0% | |
| TCTTTCCCATGCATTTCTTA+GGG | + | chr6_3:22373150-22373169 | Msa0944920:intron | 35.0% | |
| ATAAGAGCCAAAACTGCTAA+GGG | - | chr6_3:22373234-22373253 | None:intergenic | 35.0% | |
| TATAAGAGCCAAAACTGCTA+AGG | - | chr6_3:22373235-22373254 | None:intergenic | 35.0% | |
| GCTCTTATATATCCGTAGTT+GGG | + | chr6_3:22373246-22373265 | Msa0944920:intron | 35.0% | |
| GCAGTGGAAATAACATAACA+AGG | + | chr6_3:22373306-22373325 | Msa0944920:intron | 35.0% | |
| TGAACAAAATTCAACCACAC+TGG | + | chr6_3:22373349-22373368 | Msa0944920:intron | 35.0% | |
| AAAATTCAACCACACTGGAA+TGG | + | chr6_3:22373354-22373373 | Msa0944920:intron | 35.0% | |
| ! | TCTCCAAAAGTATGAAAAGC+TGG | - | chr6_3:22373395-22373414 | None:intergenic | 35.0% |
| CTCTTAAATTAGGTCGAAGT+TGG | - | chr6_3:22373543-22373562 | None:intergenic | 35.0% | |
| TACAAGGCCTGAGTTAAATT+TGG | + | chr6_3:22373620-22373639 | Msa0944920:intron | 35.0% | |
| CAAATCAAATATAGGTGGCA+GGG | - | chr6_3:22373722-22373741 | None:intergenic | 35.0% | |
| TCAAATCAAATATAGGTGGC+AGG | - | chr6_3:22373723-22373742 | None:intergenic | 35.0% | |
| TTCGCTACTAACCTGTTAAA+TGG | - | chr6_3:22373792-22373811 | None:intergenic | 35.0% | |
| TTTAACAGGTTAGTAGCGAA+AGG | + | chr6_3:22373792-22373811 | Msa0944920:intron | 35.0% | |
| CTCTTCCCTTAACCTTAATA+GGG | - | chr6_3:22373857-22373876 | None:intergenic | 35.0% | |
| TGTTCAGAGAAGAGAATCAA+AGG | + | chr6_3:22374013-22374032 | Msa0944920:intron | 35.0% | |
| AGAAGAGAATCAAAGGTCAA+CGG | + | chr6_3:22374020-22374039 | Msa0944920:intron | 35.0% | |
| ATGTGACCATGATTCTATCT+TGG | - | chr6_3:22374163-22374182 | None:intergenic | 35.0% | |
| ! | TTTTTGACGATACTGACGAA+TGG | + | chr6_3:22374260-22374279 | Msa0944920:intron | 35.0% |
| ! | GGTGTCCTTTTATTATCTCT+TGG | - | chr6_3:22374344-22374363 | None:intergenic | 35.0% |
| ACTAAATAAATTGGGTGGGT+AGG | - | chr6_3:22374407-22374426 | None:intergenic | 35.0% | |
| !! | AGAGCATAAAGGTTTTTCGA+AGG | + | chr6_3:22374551-22374570 | Msa0944920:CDS | 35.0% |
| CACTTTGTACACTTTAGTGT+AGG | - | chr6_3:22374655-22374674 | None:intergenic | 35.0% | |
| CTACACTAAAGTGTACAAAG+TGG | + | chr6_3:22374653-22374672 | Msa0944920:CDS | 35.0% | |
| TGATAGGTGGATCTGGTAAT+TGG | + | chr6_3:22372100-22372119 | Msa0944920:CDS | 40.0% | |
| TGGTCTGTTCCGATTCTTAT+AGG | + | chr6_3:22372120-22372139 | Msa0944920:CDS | 40.0% | |
| TCAGGTGCACCTATAAGAAT+CGG | - | chr6_3:22372132-22372151 | None:intergenic | 40.0% | |
| CTTAATAGGAGCAAGAGACT+TGG | - | chr6_3:22372201-22372220 | None:intergenic | 40.0% | |
| CTACTAAGGCTGAGCTTAAT+AGG | - | chr6_3:22372215-22372234 | None:intergenic | 40.0% | |
| ATTAAGCTCAGCCTTAGTAG+AGG | + | chr6_3:22372215-22372234 | Msa0944920:CDS | 40.0% | |
| TGGCTGGTAATACCACTTAA+GGG | - | chr6_3:22372273-22372292 | None:intergenic | 40.0% | |
| ATGGCTGGTAATACCACTTA+AGG | - | chr6_3:22372274-22372293 | None:intergenic | 40.0% | |
| GATCTATGCATAGTCATTCC+AGG | - | chr6_3:22372402-22372421 | None:intergenic | 40.0% | |
| ATAGATCACCCCTATTTGTG+TGG | + | chr6_3:22372415-22372434 | Msa0944920:intron | 40.0% | |
| AAAAGTGGGAATGCTGTTAC+TGG | - | chr6_3:22372447-22372466 | None:intergenic | 40.0% | |
| GTGTATATTCCAATTCTGCC+TGG | + | chr6_3:22372606-22372625 | Msa0944920:CDS | 40.0% | |
| !!! | TTCGACTTTTTCGGGAAAAC+CGG | + | chr6_3:22372653-22372672 | Msa0944920:CDS | 40.0% |
| GGCTCATCATATGTTTACTG+TGG | + | chr6_3:22372740-22372759 | Msa0944920:intron | 40.0% | |
| !! | ACACCCATGTTATTTGCTGT+AGG | + | chr6_3:22372882-22372901 | Msa0944920:intron | 40.0% |
| !! | CACCCATGTTATTTGCTGTA+GGG | + | chr6_3:22372883-22372902 | Msa0944920:intron | 40.0% |
| GAACCCTACAGCAAATAACA+TGG | - | chr6_3:22372889-22372908 | None:intergenic | 40.0% | |
| !!! | GCCGTTTTTGCTTTATTTGC+AGG | + | chr6_3:22373029-22373048 | Msa0944920:intron | 40.0% |
| CTAAGAAATGCATGGGAAAG+AGG | - | chr6_3:22373151-22373170 | None:intergenic | 40.0% | |
| CTCTTTCCCATGCATTTCTT+AGG | + | chr6_3:22373149-22373168 | Msa0944920:intron | 40.0% | |
| GAAAGCCCTAAGAAATGCAT+GGG | - | chr6_3:22373158-22373177 | None:intergenic | 40.0% | |
| CATGCATTTCTTAGGGCTTT+CGG | + | chr6_3:22373157-22373176 | Msa0944920:intron | 40.0% | |
| ATGCATTTCTTAGGGCTTTC+GGG | + | chr6_3:22373158-22373177 | Msa0944920:intron | 40.0% | |
| GGCTCTTATATATCCGTAGT+TGG | + | chr6_3:22373245-22373264 | Msa0944920:intron | 40.0% | |
| GTAACAATCACTTCAAGCAG+TGG | + | chr6_3:22373290-22373309 | Msa0944920:intron | 40.0% | |
| ! | GAATTTTGTTCAACAGCCCA+AGG | - | chr6_3:22373341-22373360 | None:intergenic | 40.0% |
| ! | CCAAAAGTATGAAAAGCTGG+AGG | - | chr6_3:22373392-22373411 | None:intergenic | 40.0% |
| ! | CCTCCAGCTTTTCATACTTT+TGG | + | chr6_3:22373389-22373408 | Msa0944920:intron | 40.0% |
| GTTAGGTTCTTAGTAGCAGT+CGG | - | chr6_3:22373477-22373496 | None:intergenic | 40.0% | |
| AAAGCAAGCTCAGTTCAGAA+TGG | + | chr6_3:22373568-22373587 | Msa0944920:intron | 40.0% | |
| AGCAAGCCCTATTAAGGTTA+AGG | + | chr6_3:22373848-22373867 | Msa0944920:intron | 40.0% | |
| GCAAGCCCTATTAAGGTTAA+GGG | + | chr6_3:22373849-22373868 | Msa0944920:intron | 40.0% | |
| CCTCTTCCCTTAACCTTAAT+AGG | - | chr6_3:22373858-22373877 | None:intergenic | 40.0% | |
| CCTATTAAGGTTAAGGGAAG+AGG | + | chr6_3:22373855-22373874 | Msa0944920:intron | 40.0% | |
| ACGAGAGCAAGAAAAGGAAA+TGG | + | chr6_3:22374105-22374124 | Msa0944920:CDS | 40.0% | |
| TGATTCTATCTTGGTGAGAG+TGG | - | chr6_3:22374154-22374173 | None:intergenic | 40.0% | |
| CTCTCACCAAGATAGAATCA+TGG | + | chr6_3:22374154-22374173 | Msa0944920:CDS | 40.0% | |
| ACGGGCCAAGAGATAATAAA+AGG | + | chr6_3:22374336-22374355 | Msa0944920:intron | 40.0% | |
| ! | AGCTCTTTTTCTTGCTCTTC+TGG | - | chr6_3:22374365-22374384 | None:intergenic | 40.0% |
| TAAATTGGGTGGGTAGGATA+AGG | - | chr6_3:22374401-22374420 | None:intergenic | 40.0% | |
| TCTTATAGGTGCACCTGACA+TGG | + | chr6_3:22372134-22372153 | Msa0944920:CDS | 45.0% | |
| AATCGTGGAAATGCCATGTC+AGG | - | chr6_3:22372150-22372169 | None:intergenic | 45.0% | |
| AATAGGAGCAAGAGACTTGG+TGG | - | chr6_3:22372198-22372217 | None:intergenic | 45.0% | |
| CTGGTAATACCACTTAAGGG+CGG | - | chr6_3:22372270-22372289 | None:intergenic | 45.0% | |
| AGTGGTATTACCAGCCATTC+TGG | + | chr6_3:22372276-22372295 | Msa0944920:intron | 45.0% | |
| AATCAACTGCTCCTCCAGAA+TGG | - | chr6_3:22372293-22372312 | None:intergenic | 45.0% | |
| ACAACTATCTCCAACATGCG+TGG | + | chr6_3:22372375-22372394 | Msa0944920:intron | 45.0% | |
| TGGAACGGACCACACAAATA+GGG | - | chr6_3:22372427-22372446 | None:intergenic | 45.0% | |
| TGGGAATGCTGTTACTGGAA+CGG | - | chr6_3:22372442-22372461 | None:intergenic | 45.0% | |
| CAGCATCTCTTTCGGTTCTT+CGG | + | chr6_3:22372573-22372592 | Msa0944920:CDS | 45.0% | |
| ATTCCAATTCTGCCTGGATC+CGG | + | chr6_3:22372612-22372631 | Msa0944920:CDS | 45.0% | |
| TGACTTATGATACCGGATCC+AGG | - | chr6_3:22372627-22372646 | None:intergenic | 45.0% | |
| !! | TTTTCGGGAAAACCGGTCTT+CGG | + | chr6_3:22372660-22372679 | Msa0944920:CDS | 45.0% |
| AGCTATGATCATGGTAGCAG+CGG | - | chr6_3:22372796-22372815 | None:intergenic | 45.0% | |
| TTAGTTGGATCGCTACCATG+TGG | + | chr6_3:22372838-22372857 | Msa0944920:intron | 45.0% | |
| TAGTTGGATCGCTACCATGT+GGG | + | chr6_3:22372839-22372858 | Msa0944920:intron | 45.0% | |
| TATTCCAGTGAGTCCTCCTA+TGG | - | chr6_3:22372925-22372944 | None:intergenic | 45.0% | |
| GAATAGTCCCGGCAAATTCA+GGG | + | chr6_3:22372940-22372959 | Msa0944920:intron | 45.0% | |
| ATGTCTAGCCCTGAATTTGC+CGG | - | chr6_3:22372951-22372970 | None:intergenic | 45.0% | |
| TGCAGGATTTCACTATTGGG+TGG | + | chr6_3:22373046-22373065 | Msa0944920:intron | 45.0% | |
| GCAGGATTTCACTATTGGGT+GGG | + | chr6_3:22373047-22373066 | Msa0944920:intron | 45.0% | |
| GGGTGGGTAAAATCTTTGGT+CGG | + | chr6_3:22373063-22373082 | Msa0944920:intron | 45.0% | |
| CGGACATACCCTGAAACTTT+AGG | + | chr6_3:22373083-22373102 | Msa0944920:intron | 45.0% | |
| CGAAAGCCCTAAGAAATGCA+TGG | - | chr6_3:22373159-22373178 | None:intergenic | 45.0% | |
| GCGTAAGCATCTGGATAATC+TGG | - | chr6_3:22373200-22373219 | None:intergenic | 45.0% | |
| GATTATCCAGATGCTTACGC+TGG | + | chr6_3:22373200-22373219 | Msa0944920:intron | 45.0% | |
| ! | TGGAATGCCCTTAGCAGTTT+TGG | + | chr6_3:22373224-22373243 | Msa0944920:intron | 45.0% |
| GAAACGACGAATCCCAACTA+CGG | - | chr6_3:22373261-22373280 | None:intergenic | 45.0% | |
| TAACAAGGGCGAACATTCCT+TGG | + | chr6_3:22373321-22373340 | Msa0944920:intron | 45.0% | |
| AACAAGGGCGAACATTCCTT+GGG | + | chr6_3:22373322-22373341 | Msa0944920:intron | 45.0% | |
| TGGAGAACTTCCAGCTATCA+AGG | + | chr6_3:22373409-22373428 | Msa0944920:intron | 45.0% | |
| !! | CTTTTCGTCTCCTTGATAGC+TGG | - | chr6_3:22373422-22373441 | None:intergenic | 45.0% |
| GGTACTCAACTCTTCTTCGT+TGG | - | chr6_3:22373522-22373541 | None:intergenic | 45.0% | |
| GAATGGCTACTTACCAACAG+AGG | + | chr6_3:22373585-22373604 | Msa0944920:intron | 45.0% | |
| GAAATTTGATCGAGCTGAGC+CGG | + | chr6_3:22373642-22373661 | Msa0944920:intron | 45.0% | |
| CCTGTTAAATGGAGTTGAGC+TGG | - | chr6_3:22373781-22373800 | None:intergenic | 45.0% | |
| CCAGCTCAACTCCATTTAAC+AGG | + | chr6_3:22373778-22373797 | Msa0944920:intron | 45.0% | |
| CAGGTTAGTAGCGAAAGGTA+AGG | + | chr6_3:22373797-22373816 | Msa0944920:intron | 45.0% | |
| AGAAGGAGCAAGCCCTATTA+AGG | + | chr6_3:22373842-22373861 | Msa0944920:intron | 45.0% | |
| TCAAGGAAGCCGGAAAGAAA+GGG | + | chr6_3:22373908-22373927 | Msa0944920:intron | 45.0% | |
| GAAAGTCGAGCTGAGGAATA+CGG | + | chr6_3:22373953-22373972 | Msa0944920:intron | 45.0% | |
| TGAGGAATACGGAAGAGAAG+CGG | + | chr6_3:22373964-22373983 | Msa0944920:intron | 45.0% | |
| CTCTTCTCTGAACAGCTCTT+AGG | - | chr6_3:22374007-22374026 | None:intergenic | 45.0% | |
| AATCAAAGGTCAACGGCCAA+TGG | + | chr6_3:22374027-22374046 | Msa0944920:intron | 45.0% | |
| ! | TTTAAGATGAATCCGGGGGA+GGG | - | chr6_3:22374056-22374075 | None:intergenic | 45.0% |
| ! | TCGGTTTAAGATGAATCCGG+GGG | - | chr6_3:22374060-22374079 | None:intergenic | 45.0% |
| ! | GTCGGTTTAAGATGAATCCG+GGG | - | chr6_3:22374061-22374080 | None:intergenic | 45.0% |
| ! | GGTCGGTTTAAGATGAATCC+GGG | - | chr6_3:22374062-22374081 | None:intergenic | 45.0% |
| ! | CGGTCGGTTTAAGATGAATC+CGG | - | chr6_3:22374063-22374082 | None:intergenic | 45.0% |
| TGGATGTCATCTCGGCATAT+CGG | - | chr6_3:22374083-22374102 | None:intergenic | 45.0% | |
| TGGACTCTCATTGGTCAAAC+AGG | + | chr6_3:22374309-22374328 | Msa0944920:intron | 45.0% | |
| GAATAGCTGATCGAGCTCTT+TGG | - | chr6_3:22374496-22374515 | None:intergenic | 45.0% | |
| !!! | TTTTTTCTTCCGGCGTCAAC+CGG | - | chr6_3:22374530-22374549 | None:intergenic | 45.0% |
| CAATGCTCTCAGCTGAAACA+GGG | - | chr6_3:22374584-22374603 | None:intergenic | 45.0% | |
| TCAATGCTCTCAGCTGAAAC+AGG | - | chr6_3:22374585-22374604 | None:intergenic | 45.0% | |
| TCTTTAAACGTGCCAAGCTG+TGG | - | chr6_3:22374627-22374646 | None:intergenic | 45.0% | |
| CAGCTTGGCACGTTTAAAGA+AGG | + | chr6_3:22374627-22374646 | Msa0944920:CDS | 45.0% | |
| ATGGTTATGCCGGCGATGAT+AGG | + | chr6_3:22372084-22372103 | Msa0944920:CDS | 50.0% | |
| AAGCTCAGCCTTAGTAGAGG+TGG | + | chr6_3:22372218-22372237 | Msa0944920:CDS | 50.0% | |
| AGCTCAGCCTTAGTAGAGGT+GGG | + | chr6_3:22372219-22372238 | Msa0944920:CDS | 50.0% | |
| GGTATTACCAGCCATTCTGG+AGG | + | chr6_3:22372279-22372298 | Msa0944920:intron | 50.0% | |
| GGAACGGACCACACAAATAG+GGG | - | chr6_3:22372426-22372445 | None:intergenic | 50.0% | |
| CTGGAACGGACCACACAAAT+AGG | - | chr6_3:22372428-22372447 | None:intergenic | 50.0% | |
| !! | TTATCACTTCCGGTACTGGC+AGG | + | chr6_3:22372468-22372487 | Msa0944920:intron | 50.0% |
| !! | TATCACTTCCGGTACTGGCA+GGG | + | chr6_3:22372469-22372488 | Msa0944920:intron | 50.0% |
| ! | ACAACCTTTTCTGATCCCGC+AGG | + | chr6_3:22372528-22372547 | Msa0944920:CDS | 50.0% |
| CGAAGAACCGAAAGAGATGC+TGG | - | chr6_3:22372575-22372594 | None:intergenic | 50.0% | |
| ATACCGGATCCAGGCAGAAT+TGG | - | chr6_3:22372618-22372637 | None:intergenic | 50.0% | |
| TTTCGGGAAAACCGGTCTTC+GGG | + | chr6_3:22372661-22372680 | Msa0944920:CDS | 50.0% | |
| AAACCGGTCTTCGGGTATCT+AGG | + | chr6_3:22372669-22372688 | Msa0944920:CDS | 50.0% | |
| ATGCCTAGATACCCGAAGAC+CGG | - | chr6_3:22372675-22372694 | None:intergenic | 50.0% | |
| TGTGGGGACAGCTATGATCA+TGG | - | chr6_3:22372805-22372824 | None:intergenic | 50.0% | |
| ATGATCATAGCTGTCCCCAC+AGG | + | chr6_3:22372804-22372823 | Msa0944920:intron | 50.0% | |
| AGTTGGATCGCTACCATGTG+GGG | + | chr6_3:22372840-22372859 | Msa0944920:intron | 50.0% | |
| TTGTATAGAACCCCCCCACA+TGG | - | chr6_3:22372856-22372875 | None:intergenic | 50.0% | |
| TTCACCATAGGAGGACTCAC+TGG | + | chr6_3:22372918-22372937 | Msa0944920:intron | 50.0% | |
| AGGACTCACTGGAATAGTCC+CGG | + | chr6_3:22372929-22372948 | Msa0944920:intron | 50.0% | |
| GGAATAGTCCCGGCAAATTC+AGG | + | chr6_3:22372939-22372958 | Msa0944920:intron | 50.0% | |
| TGTCTAGCCCTGAATTTGCC+GGG | - | chr6_3:22372950-22372969 | None:intergenic | 50.0% | |
| ! | GGATAATCTGGAATGCGACG+TGG | - | chr6_3:22373188-22373207 | None:intergenic | 50.0% |
| ATCCAGATGCTTACGCTGGA+TGG | + | chr6_3:22373204-22373223 | Msa0944920:intron | 50.0% | |
| TTCCATCCAGCGTAAGCATC+TGG | - | chr6_3:22373209-22373228 | None:intergenic | 50.0% | |
| TGGGATTCGTCGTTTCTTCG+TGG | + | chr6_3:22373265-22373284 | Msa0944920:intron | 50.0% | |
| TTCAACCACACTGGAATGGC+TGG | + | chr6_3:22373358-22373377 | Msa0944920:intron | 50.0% | |
| TTGTACCAGCCATTCCAGTG+TGG | - | chr6_3:22373366-22373385 | None:intergenic | 50.0% | |
| CTTACCAACAGAGGATAGCG+AGG | + | chr6_3:22373594-22373613 | Msa0944920:intron | 50.0% | |
| AGTACCTCGCTATCCTCTGT+TGG | - | chr6_3:22373601-22373620 | None:intergenic | 50.0% | |
| ! | GAGGATAGCGAGGTACTACA+AGG | + | chr6_3:22373604-22373623 | Msa0944920:intron | 50.0% |
| ATAGTCAGTAGGAGCAGCTC+CGG | - | chr6_3:22373664-22373683 | None:intergenic | 50.0% | |
| ! | CTGCTCCTACTGACTATGAC+TGG | + | chr6_3:22373667-22373686 | Msa0944920:intron | 50.0% |
| GCTGTCCAGTCATAGTCAGT+AGG | - | chr6_3:22373675-22373694 | None:intergenic | 50.0% | |
| TGACTATGACTGGACAGCAG+TGG | + | chr6_3:22373677-22373696 | Msa0944920:intron | 50.0% | |
| GGTAAGGCTTAATTCCCGAG+TGG | + | chr6_3:22373813-22373832 | Msa0944920:intron | 50.0% | |
| CTCAAGGAAGCCGGAAAGAA+AGG | + | chr6_3:22373907-22373926 | Msa0944920:intron | 50.0% | |
| GTCTTGAGGCCCTTTCTTTC+CGG | - | chr6_3:22373920-22373939 | None:intergenic | 50.0% | |
| AAAGGGCCTCAAGACAGCTT+CGG | + | chr6_3:22373925-22373944 | Msa0944920:intron | 50.0% | |
| ! | GTTTAAGATGAATCCGGGGG+AGG | - | chr6_3:22374057-22374076 | None:intergenic | 50.0% |
| TGTCATCTCGGCATATCGGT+CGG | - | chr6_3:22374079-22374098 | None:intergenic | 50.0% | |
| TCTCGTGCTGGATGTCATCT+CGG | - | chr6_3:22374091-22374110 | None:intergenic | 50.0% | |
| TCCAGCACGAGAGCAAGAAA+AGG | + | chr6_3:22374099-22374118 | Msa0944920:intron | 50.0% | |
| ! | TCCTTTTCTTGCTCTCGTGC+TGG | - | chr6_3:22374103-22374122 | None:intergenic | 50.0% |
| CAATCGACACTGGTAGCCAT+CGG | + | chr6_3:22374218-22374237 | Msa0944920:intron | 50.0% | |
| AATCGACACTGGTAGCCATC+GGG | + | chr6_3:22374219-22374238 | Msa0944920:intron | 50.0% | |
| GAATCTGATGAGCTCCAGTC+TGG | + | chr6_3:22374289-22374308 | Msa0944920:intron | 50.0% | |
| TGACCAATGAGAGTCCAGAC+TGG | - | chr6_3:22374306-22374325 | None:intergenic | 50.0% | |
| CATTGGTCAAACAGGCGCAA+CGG | + | chr6_3:22374317-22374336 | Msa0944920:intron | 50.0% | |
| ATTGGTCAAACAGGCGCAAC+GGG | + | chr6_3:22374318-22374337 | Msa0944920:intron | 50.0% | |
| TGATCGAGCTCTTTGGTACG+CGG | - | chr6_3:22374489-22374508 | None:intergenic | 50.0% | |
| !! | TTTTTCAGTCCGGTTGACGC+CGG | + | chr6_3:22374518-22374537 | Msa0944920:CDS | 50.0% |
| GTTATGCCGGCGATGATAGG+TGG | + | chr6_3:22372087-22372106 | Msa0944920:CDS | 55.0% | |
| CCAGATCCACCTATCATCGC+CGG | - | chr6_3:22372096-22372115 | None:intergenic | 55.0% | |
| GCCTTAGTAGAGGTGGGTAG+CGG | + | chr6_3:22372225-22372244 | Msa0944920:CDS | 55.0% | |
| ACGGTCTATCCGCCCTTAAG+TGG | + | chr6_3:22372258-22372277 | Msa0944920:CDS | 55.0% | |
| AACTGCTCCTCCAGAATGGC+TGG | - | chr6_3:22372289-22372308 | None:intergenic | 55.0% | |
| ATCTCCAACATGCGTGGACC+TGG | + | chr6_3:22372381-22372400 | Msa0944920:intron | 55.0% | |
| CATTCCAGGTCCACGCATGT+TGG | - | chr6_3:22372388-22372407 | None:intergenic | 55.0% | |
| !! | ATCACTTCCGGTACTGGCAG+GGG | + | chr6_3:22372470-22372489 | Msa0944920:intron | 55.0% |
| GTAATTGCCCCTGCCAGTAC+CGG | - | chr6_3:22372480-22372499 | None:intergenic | 55.0% | |
| ! | ACCTTTTCTGATCCCGCAGG+AGG | + | chr6_3:22372531-22372550 | Msa0944920:CDS | 55.0% |
| ! | CCTTTTCTGATCCCGCAGGA+GGG | + | chr6_3:22372532-22372551 | Msa0944920:CDS | 55.0% |
| ! | CTTTTCTGATCCCGCAGGAG+GGG | + | chr6_3:22372533-22372552 | Msa0944920:CDS | 55.0% |
| ! | TTTTCTGATCCCGCAGGAGG+GGG | + | chr6_3:22372534-22372553 | Msa0944920:CDS | 55.0% |
| TCGGTTCTTCGGTCATCCAG+AGG | + | chr6_3:22372584-22372603 | Msa0944920:CDS | 55.0% | |
| GGTCTTCGGGTATCTAGGCA+TGG | + | chr6_3:22372674-22372693 | Msa0944920:CDS | 55.0% | |
| TAGCAGCGGTGAAGTAGGCA+CGG | - | chr6_3:22372782-22372801 | None:intergenic | 55.0% | |
| CATGGTAGCAGCGGTGAAGT+AGG | - | chr6_3:22372787-22372806 | None:intergenic | 55.0% | |
| GTTGGATCGCTACCATGTGG+GGG | + | chr6_3:22372841-22372860 | Msa0944920:intron | 55.0% | |
| TTGGATCGCTACCATGTGGG+GGG | + | chr6_3:22372842-22372861 | Msa0944920:intron | 55.0% | |
| TTCCCGAGTGGACGAGAAGA+AGG | + | chr6_3:22373825-22373844 | Msa0944920:intron | 55.0% | |
| CTCCTTCTTCTCGTCCACTC+GGG | - | chr6_3:22373830-22373849 | None:intergenic | 55.0% | |
| GCTCCTTCTTCTCGTCCACT+CGG | - | chr6_3:22373831-22373850 | None:intergenic | 55.0% | |
| ! | CTAGCTACCGAGCTGACTCA+AGG | + | chr6_3:22373891-22373910 | Msa0944920:intron | 55.0% |
| CTGTTGCCGAAGCTGTCTTG+AGG | - | chr6_3:22373934-22373953 | None:intergenic | 55.0% | |
| GGCAACAGAAAGTCGAGCTG+AGG | + | chr6_3:22373946-22373965 | Msa0944920:intron | 55.0% | |
| CAAAGGTCAACGGCCAATGG+AGG | + | chr6_3:22374030-22374049 | Msa0944920:intron | 55.0% | |
| TGGCGTGACTTGAAGCTGCA+CGG | - | chr6_3:22374134-22374153 | None:intergenic | 55.0% | |
| AGCGGAATGCCAATCGACAC+TGG | + | chr6_3:22374208-22374227 | Msa0944920:intron | 55.0% | |
| !! | CGATGGCTACCAGTGTCGAT+TGG | - | chr6_3:22374220-22374239 | None:intergenic | 55.0% |
| GCAGCTGAACTCAATCCCGA+TGG | - | chr6_3:22374237-22374256 | None:intergenic | 55.0% | |
| GCTCCAGTCTGGACTCTCAT+TGG | + | chr6_3:22374300-22374319 | Msa0944920:intron | 55.0% | |
| !! | GCTGAGAGCATTGATTCCCC+TGG | + | chr6_3:22374591-22374610 | Msa0944920:CDS | 55.0% |
| CCGGCGATGATAGGTGGATC+TGG | + | chr6_3:22372093-22372112 | Msa0944920:CDS | 60.0% | |
| GCCGCTACCCACCTCTACTA+AGG | - | chr6_3:22372229-22372248 | None:intergenic | 60.0% | |
| ! | TAGAGGTGGGTAGCGGCACT+GGG | + | chr6_3:22372232-22372251 | Msa0944920:CDS | 60.0% |
| CCCTCCTGCGGGATCAGAAA+AGG | - | chr6_3:22372535-22372554 | None:intergenic | 60.0% | |
| AGCAGCGGTGAAGTAGGCAC+GGG | - | chr6_3:22372781-22372800 | None:intergenic | 60.0% | |
| TGGATCGCTACCATGTGGGG+GGG | + | chr6_3:22372843-22372862 | Msa0944920:intron | 60.0% | |
| CCGGCTTCCTTGAGTCAGCT+CGG | - | chr6_3:22373901-22373920 | None:intergenic | 60.0% | |
| ! | CCGAGCTGACTCAAGGAAGC+CGG | + | chr6_3:22373898-22373917 | Msa0944920:intron | 60.0% |
| !! | CTGTGGAAGAGAGGTGCCAG+GGG | - | chr6_3:22374610-22374629 | None:intergenic | 60.0% |
| !! | GCTGTGGAAGAGAGGTGCCA+GGG | - | chr6_3:22374611-22374630 | None:intergenic | 60.0% |
| !! | AGCTGTGGAAGAGAGGTGCC+AGG | - | chr6_3:22374612-22374631 | None:intergenic | 60.0% |
| GGCACCTCTCTTCCACAGCT+TGG | + | chr6_3:22374612-22374631 | Msa0944920:CDS | 60.0% | |
| CGTGCCAAGCTGTGGAAGAG+AGG | - | chr6_3:22374619-22374638 | None:intergenic | 60.0% | |
| ! | GTAGAGGTGGGTAGCGGCAC+TGG | + | chr6_3:22372231-22372250 | Msa0944920:CDS | 65.0% |
| TATGGGGTCTCCCCCTCCTG+CGG | - | chr6_3:22372547-22372566 | None:intergenic | 65.0% | |
| ! | AGGTGGGTAGCGGCACTGGG+TGG | + | chr6_3:22372235-22372254 | Msa0944920:CDS | 70.0% |
| ! | GGGTAGCGGCACTGGGTGGA+CGG | + | chr6_3:22372239-22372258 | Msa0944920:CDS | 70.0% |
| ATGGGGTCTCCCCCTCCTGC+GGG | - | chr6_3:22372546-22372565 | None:intergenic | 70.0% | |
| ATCCGGGGGAGGGCCTCCAT+TGG | - | chr6_3:22374046-22374065 | None:intergenic | 70.0% | |
| GGCCAATGGAGGCCCTCCCC+CGG | + | chr6_3:22374041-22374060 | Msa0944920:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 22372084 | 22374680 | 22372084 | ID=Msa0944920;Name=Msa0944920 |
| chr6_3 | mRNA | 22372084 | 22374680 | 22372084 | ID=Msa0944920-mRNA-1;Parent=Msa0944920;Name=Msa0944920-mRNA-1;_AED=0.27;_eAED=0.27;_QI=0|0|0|0.75|0|0|4|0|239 |
| chr6_3 | exon | 22372084 | 22372279 | 22372084 | ID=Msa0944920-mRNA-1:exon:6568;Parent=Msa0944920-mRNA-1 |
| chr6_3 | exon | 22372490 | 22372734 | 22372490 | ID=Msa0944920-mRNA-1:exon:6569;Parent=Msa0944920-mRNA-1 |
| chr6_3 | exon | 22374104 | 22374187 | 22374104 | ID=Msa0944920-mRNA-1:exon:6570;Parent=Msa0944920-mRNA-1 |
| chr6_3 | exon | 22374486 | 22374680 | 22374486 | ID=Msa0944920-mRNA-1:exon:6571;Parent=Msa0944920-mRNA-1 |
| chr6_3 | CDS | 22372084 | 22372279 | 22372084 | ID=Msa0944920-mRNA-1:cds;Parent=Msa0944920-mRNA-1 |
| chr6_3 | CDS | 22372490 | 22372734 | 22372490 | ID=Msa0944920-mRNA-1:cds;Parent=Msa0944920-mRNA-1 |
| chr6_3 | CDS | 22374104 | 22374187 | 22374104 | ID=Msa0944920-mRNA-1:cds;Parent=Msa0944920-mRNA-1 |
| chr6_3 | CDS | 22374486 | 22374680 | 22374486 | ID=Msa0944920-mRNA-1:cds;Parent=Msa0944920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
