AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1438490

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1438490 MtrunA17_Chr1g0200071 80.172 232 36 1 165 396 217 438 2.74e-126 371
Msa1438490 MtrunA17_Chr1g0200071 74.497 149 33 2 28 171 1 149 4.83e-67 219
Msa1438490 MtrunA17_Chr1g0200091 80.172 232 36 1 165 396 217 438 2.74e-126 371
Msa1438490 MtrunA17_Chr1g0200091 74.497 149 33 2 28 171 1 149 4.83e-67 219
Msa1438490 MtrunA17_Chr1g0200121 79.741 232 37 1 165 396 217 438 4.02e-126 371
Msa1438490 MtrunA17_Chr1g0200121 74.497 149 33 2 28 171 1 149 4.78e-67 219
Msa1438490 MtrunA17_Chr6g0458111 77.391 230 42 1 165 394 217 436 8.44e-122 360
Msa1438490 MtrunA17_Chr6g0458111 74.497 149 33 2 28 171 1 149 5.52e-67 219
Msa1438490 MtrunA17_Chr6g0458091 77.391 230 42 1 165 394 217 436 8.44e-122 360
Msa1438490 MtrunA17_Chr6g0458091 74.497 149 33 2 28 171 1 149 5.52e-67 219
Msa1438490 MtrunA17_Chr4g0005781 77.632 228 41 1 165 392 217 434 2.12e-120 356
Msa1438490 MtrunA17_Chr4g0005781 74.497 149 33 2 28 171 1 149 3.21e-67 219
Msa1438490 MtrunA17_Chr1g0196251 51.688 385 125 6 30 363 6 380 3.06e-120 354
Msa1438490 MtrunA17_Chr1g0200111 90.960 177 16 0 212 388 1 177 1.28e-112 327
Msa1438490 MtrunA17_Chr1g0150331 72.414 232 28 2 165 396 220 415 2.54e-108 325
Msa1438490 MtrunA17_Chr1g0150331 73.826 149 34 2 28 171 1 149 3.26e-66 216
Msa1438490 MtrunA17_Chr8g0340771 70.130 231 59 1 165 395 219 439 4.83e-106 320
Msa1438490 MtrunA17_Chr8g0340771 66.216 148 45 3 29 171 4 151 1.92e-53 183
Msa1438490 MtrunA17_Chr1g0204031 68.398 231 62 2 165 395 213 432 1.20e-99 315
Msa1438490 MtrunA17_Chr1g0204031 58.115 191 62 4 30 204 5 193 5.81e-56 197
Msa1438490 MtrunA17_Chr1g0193591 66.228 228 67 1 165 392 217 434 1.04e-98 301
Msa1438490 MtrunA17_Chr1g0193591 68.276 145 43 1 30 171 5 149 1.91e-60 202
Msa1438490 MtrunA17_Chr1g0156421 64.474 228 71 1 165 392 217 434 2.07e-96 295
Msa1438490 MtrunA17_Chr1g0156421 66.901 142 44 1 33 171 8 149 7.35e-58 195
Msa1438490 MtrunA17_Chr5g0415391 64.629 229 71 1 165 393 179 397 6.70e-96 293
Msa1438490 MtrunA17_Chr5g0415391 57.658 111 44 1 64 171 1 111 1.59e-33 129
Msa1438490 MtrunA17_Chr2g0319341 61.135 229 77 2 165 391 116 334 2.85e-86 269
Msa1438490 MtrunA17_Chr2g0298371 60.550 218 74 2 167 382 101 308 2.12e-84 259
Msa1438490 MtrunA17_Chr2g0318281 57.000 200 76 2 191 390 5 194 1.16e-69 219
Msa1438490 MtrunA17_Chr1g0156411 67.883 137 41 1 33 166 12 148 8.62e-61 193
Msa1438490 MtrunA17_Chr1g0210931 51.339 224 50 3 167 390 66 230 8.94e-61 197
Msa1438490 MtrunA17_Chr8g0340361 55.135 185 77 2 212 391 1 184 1.03e-60 194
Msa1438490 MtrunA17_Chr1g0204041 70.139 144 38 2 28 166 1 144 3.35e-60 192
Msa1438490 MtrunA17_Chr8g0336511 63.694 157 51 3 21 171 59 215 2.42e-57 192
Msa1438490 MtrunA17_Chr8g0336511 60.331 121 38 1 165 285 283 393 6.41e-38 140
Msa1438490 MtrunA17_Chr2g0318291 62.411 141 49 2 30 166 7 147 4.92e-50 168
Msa1438490 MtrunA17_Chr8g0340371 60.563 142 50 3 30 167 5 144 1.25e-46 159
Msa1438490 MtrunA17_Chr4g0026961 47.486 179 73 3 167 343 53 212 4.80e-45 155
Msa1438490 MtrunA17_Chr8g0341021 66.667 99 30 1 30 125 6 104 6.83e-39 135
Msa1438490 MtrunA17_Chr2g0298381 69.474 95 26 1 30 121 5 99 2.14e-38 133
Msa1438490 MtrunA17_Chr8g0380091 45.390 141 69 3 32 166 275 413 8.66e-31 124
Msa1438490 MtrunA17_Chr8g0380091 25.974 231 158 4 163 391 485 704 1.14e-15 79.0
Msa1438490 MtrunA17_Chr6g0483121 42.857 140 77 1 30 166 89 228 1.04e-29 120
Msa1438490 MtrunA17_Chr6g0483121 28.829 222 143 4 167 386 306 514 2.42e-22 99.0
Msa1438490 MtrunA17_Chr8g0392641 42.657 143 79 1 27 166 141 283 1.25e-29 120
Msa1438490 MtrunA17_Chr8g0392641 29.148 223 143 4 167 387 361 570 2.22e-20 93.2
Msa1438490 MtrunA17_Chr1g0200101 48.201 139 45 3 46 184 2 113 1.16e-27 105
Msa1438490 MtrunA17_Chr1g0211481 65.823 79 24 1 30 105 4 82 8.98e-27 102
Msa1438490 MtrunA17_Chr2g0319351 70.833 72 18 1 30 98 5 76 4.62e-25 97.4
Msa1438490 MtrunA17_Chr8g0341041 64.179 67 24 0 165 231 6 72 9.29e-22 91.3
Msa1438490 MtrunA17_Chr8g0341041 59.322 59 24 0 332 390 100 158 2.64e-15 73.2
Msa1438490 MtrunA17_Chr3g0116821 29.333 150 85 3 19 166 77 207 1.19e-11 66.2
Msa1438490 MtrunA17_Chr2g0287231 27.000 200 108 7 16 202 2 176 1.76e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1438490 AT1G07930.2 55.145 379 140 10 28 395 1 360 8.04e-125 365
Msa1438490 AT1G07920.1 74.892 231 48 1 165 395 217 437 3.09e-119 354
Msa1438490 AT1G07920.1 74.497 149 33 2 28 171 1 149 6.08e-67 219
Msa1438490 AT1G07940.4 74.892 231 48 1 165 395 217 437 3.09e-119 354
Msa1438490 AT1G07940.4 74.497 149 33 2 28 171 1 149 6.08e-67 219
Msa1438490 AT1G07940.1 74.892 231 48 1 165 395 217 437 3.09e-119 354
Msa1438490 AT1G07940.1 74.497 149 33 2 28 171 1 149 6.08e-67 219
Msa1438490 AT1G07940.2 74.892 231 48 1 165 395 217 437 3.09e-119 354
Msa1438490 AT1G07940.2 74.497 149 33 2 28 171 1 149 6.08e-67 219
Msa1438490 AT1G07940.3 74.892 231 48 1 165 395 217 437 3.09e-119 354
Msa1438490 AT1G07940.3 74.497 149 33 2 28 171 1 149 6.08e-67 219
Msa1438490 AT5G60390.3 74.892 231 48 1 165 395 217 437 3.09e-119 354
Msa1438490 AT5G60390.3 74.497 149 33 2 28 171 1 149 6.08e-67 219
Msa1438490 AT5G60390.1 74.892 231 48 1 165 395 217 437 3.09e-119 354
Msa1438490 AT5G60390.1 74.497 149 33 2 28 171 1 149 6.08e-67 219
Msa1438490 AT5G60390.2 74.892 231 48 1 165 395 217 437 3.09e-119 354
Msa1438490 AT5G60390.2 74.497 149 33 2 28 171 1 149 6.08e-67 219
Msa1438490 AT1G07930.1 74.892 231 48 1 165 395 217 437 3.09e-119 354
Msa1438490 AT1G07930.1 74.497 149 33 2 28 171 1 149 6.08e-67 219
Msa1438490 AT1G35550.1 66.990 103 34 0 293 395 1 103 1.56e-43 147
Msa1438490 AT1G18070.1 42.143 140 78 1 30 166 99 238 7.40e-29 118
Msa1438490 AT1G18070.1 29.018 224 140 6 168 387 317 525 4.15e-21 95.5
Msa1438490 AT1G18070.2 42.143 140 78 1 30 166 99 238 7.40e-29 118
Msa1438490 AT1G18070.2 29.018 224 140 6 168 387 317 525 4.15e-21 95.5
Msa1438490 AT1G18070.3 42.143 140 78 1 30 166 99 238 9.18e-29 118
Msa1438490 AT1G18070.3 27.897 233 142 6 168 387 317 536 1.04e-18 88.6
Msa1438490 AT5G10630.1 42.143 140 71 4 32 163 239 376 4.29e-28 116
Msa1438490 AT5G10630.1 27.232 224 151 3 165 387 451 663 2.12e-17 84.7
Msa1438490 AT5G10630.5 42.143 140 71 4 32 163 240 377 4.30e-28 116
Msa1438490 AT5G10630.5 27.232 224 151 3 165 387 452 664 2.13e-17 84.7
Msa1438490 AT5G10630.2 42.143 140 71 4 32 163 240 377 4.30e-28 116
Msa1438490 AT5G10630.2 27.232 224 151 3 165 387 452 664 2.13e-17 84.7
Msa1438490 AT5G10630.3 42.143 140 71 4 32 163 310 447 4.81e-28 116
Msa1438490 AT5G10630.3 27.232 224 151 3 165 387 522 734 2.64e-17 84.3
Msa1438490 AT5G10630.4 42.143 140 71 4 32 163 315 452 5.21e-28 116
Msa1438490 AT5G10630.4 27.232 224 151 3 165 387 527 739 2.63e-17 84.3
Msa1438490 AT4G20360.1 29.560 159 85 4 18 171 63 199 8.69e-13 70.1
Msa1438490 AT4G20360.2 29.560 159 85 4 18 171 63 199 8.69e-13 70.1

Find 277 sgRNAs with CRISPR-Local

Find 740 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCACCATTCTTCAAGAATT+TGG 0.066665 tig0028560:+48002 None:intergenic
ATCACCATTCATCAGGAATT+TGG 0.127785 tig0028560:+40250 None:intergenic
CTTATCCTTGATTCCTGTAT+TGG 0.213955 tig0028560:-41428 Msa1438490:CDS
GTCTACAAGTTTGGAGGAAT+TGG 0.246382 tig0028560:-40695 Msa1438490:CDS
GCTCTCCTTGCTTTCACTCT+TGG 0.289982 tig0028560:-48857 Msa1438490:five_prime_UTR
AAGTTAGCGGCCTCCTTGGC+TGG 0.295660 tig0028560:+40425 None:intergenic
CACCCTGGCAAGATTGAAAA+TGG 0.298039 tig0028560:-40377 Msa1438490:CDS
GCCTCTTAGGCTCGTTGATT+TGG 0.314662 tig0028560:+40753 None:intergenic
GTCTACAAGATTGGAGGAAT+TGG 0.315206 tig0028560:-48417 Msa1438490:five_prime_UTR
GCCTCTTAGGCTCATTGATT+TGG 0.315866 tig0028560:+48475 None:intergenic
CTTCAGAATGTCTACAAGTT+TGG 0.317793 tig0028560:-40704 Msa1438490:CDS
TGTCAAGAATGTTGCTGTTA+AGG 0.325240 tig0028560:-48241 Msa1438490:five_prime_UTR
TCACCATTCTTCAAGAATTT+GGG 0.331757 tig0028560:+48003 None:intergenic
ATAGCCAACCTTCTTCAAAT+AGG 0.332380 tig0028560:+48611 None:intergenic
CGTACTCTGGATTATTTAGA+TGG 0.336833 tig0028560:+50296 None:intergenic
TCACCATTCATCAGGAATTT+GGG 0.341892 tig0028560:+40251 None:intergenic
CTTCTTCTTCAATGCTGACT+TGG 0.345006 tig0028560:+47816 None:intergenic
AAGATTAACATTGTTGTCAT+TGG 0.347311 tig0028560:-41749 Msa1438490:CDS
CCTCCGACGGAGTACCTTCC+CGG 0.350967 tig0028560:-40530 Msa1438490:CDS
CACATCAACATTGTGGTCAT+TGG 0.354316 tig0028560:-49247 Msa1438490:five_prime_UTR
GTTCTCCTTGCTTTCACTCT+TGG 0.355410 tig0028560:-41359 Msa1438490:CDS
TGTTGAGAACGTTGATGTTA+AGG 0.355649 tig0028560:-40489 Msa1438490:CDS
TTCCTTGGCTGGGTCATCCT+TGG 0.355973 tig0028560:+48188 None:intergenic
TGAGAAAGAAGCTGCTGAAA+TGG 0.366760 tig0028560:-41642 Msa1438490:CDS
AAGTTGGCAGATTCCTTGGC+TGG 0.367989 tig0028560:+48177 None:intergenic
ATTCCATTTGTTCCCATCTC+TGG 0.368209 tig0028560:-48576 Msa1438490:five_prime_UTR
GCTCTCACAGAGGCCCTTCC+TGG 0.369900 tig0028560:-48282 Msa1438490:five_prime_UTR
ATATCTACCCTTGGAGTACT+TGG 0.380807 tig0028560:+48659 None:intergenic
TTTAAGCTCTTAAGTCCAAA+TGG 0.381529 tig0028560:-49284 Msa1438490:five_prime_UTR
ACTAAGATTGATAGGCGTTC+TGG 0.382761 tig0028560:-48045 Msa1438490:five_prime_UTR
ACCAAGATTGATAGGCGTTC+TGG 0.383042 tig0028560:-40293 Msa1438490:CDS
CTCCTTGGCTGGGTCATCCT+TGG 0.385824 tig0028560:+40436 None:intergenic
TGCGTCAAACTGTGGCTGTT+GGG 0.386099 tig0028560:-47888 Msa1438490:five_prime_UTR
TTCCATGGTCTGGCCATCCC+TGG 0.389009 tig0028560:+41385 None:intergenic
GTCATTGGCCATGTCGACTC+TGG 0.395247 tig0028560:-49232 Msa1438490:five_prime_UTR
CACCTCCAAGTTTGTAGATC+AGG 0.403181 tig0028560:+41690 None:intergenic
TGTGAAGAACGAACGGTAGT+AGG 0.403368 tig0028560:+50243 None:intergenic
GTCATTGGCGATGTCGACTC+TGG 0.409390 tig0028560:-41734 Msa1438490:CDS
TCATTCCTTGCTACTCAACT+AGG 0.416643 tig0028560:-50209 Msa1438490:five_prime_UTR
GCAAAAGTGACAACCATTCC+AGG 0.418006 tig0028560:+48354 None:intergenic
CTCATCATTGATTCCACTAC+TGG 0.419293 tig0028560:-48926 Msa1438490:five_prime_UTR
ATGAATCACCCTGGCCAGAT+TGG 0.425183 tig0028560:-48135 Msa1438490:five_prime_UTR
CTTAATGAAATCCCTGTGTC+CGG 0.429384 tig0028560:+48988 None:intergenic
CCTGTGGGGCGTGTCGAGAC+TGG 0.431830 tig0028560:-48387 Msa1438490:five_prime_UTR
CACCCTGGCCAGATTGGAAA+TGG 0.432985 tig0028560:-48129 Msa1438490:five_prime_UTR
TGTAAAGTTGGCAGATTCCT+TGG 0.433201 tig0028560:+48173 None:intergenic
GAGAAAGAAGCTGCTGAAAT+GGG 0.439100 tig0028560:-41641 Msa1438490:CDS
CTTGAGCTTGTCAAGGATCC+AGG 0.439379 tig0028560:+41598 None:intergenic
AGCGTTCATTCAAGTATGCC+TGG 0.444655 tig0028560:-49114 Msa1438490:five_prime_UTR
AGCTTCAAAAGCACCAATAC+AGG 0.445136 tig0028560:+41415 None:intergenic
GAGCATAGCCATTTCCAATC+TGG 0.445726 tig0028560:+48121 None:intergenic
GGAGAACTTGTTCCATGGTC+TGG 0.446567 tig0028560:+41375 None:intergenic
GGCTTGTCTGAAGGCCTCTT+AGG 0.446650 tig0028560:+40740 None:intergenic
GGCTTGTCTGAAGGCCTCTT+AGG 0.446650 tig0028560:+48462 None:intergenic
ACCTTGTGACGAAGGAGAAA+AGG 0.446990 tig0028560:+50166 None:intergenic
AAACCAGAGATGGGAACAAA+TGG 0.449170 tig0028560:+48573 None:intergenic
GGTCTGCTTAAGTCCTCCAC+TGG 0.451209 tig0028560:+47837 None:intergenic
ACTTCAGTTGTCAGTCCAGT+AGG 0.456008 tig0028560:+48330 None:intergenic
ACCAGAACGCCTATCAATCT+TGG 0.457446 tig0028560:+40292 None:intergenic
CTACAGGATGTCTACAAGAT+TGG 0.458825 tig0028560:-48426 Msa1438490:five_prime_UTR
AGTCTCAACCACCATGGGCT+TGG 0.462350 tig0028560:+47954 None:intergenic
ACCAAATCAATGAGCCTAAG+AGG 0.463105 tig0028560:-48476 Msa1438490:five_prime_UTR
CATTCCTTGCTACTCAACTA+GGG 0.464545 tig0028560:-50208 Msa1438490:five_prime_UTR
TGGGTCATCCTTGGAGTTTG+AGG 0.465051 tig0028560:+48197 None:intergenic
ACCAAATCAACGAGCCTAAG+AGG 0.465441 tig0028560:-40754 Msa1438490:CDS
TTCATTAAGAACATGATCAC+TGG 0.467307 tig0028560:-41476 Msa1438490:CDS
CTCAACCACCATGGGCTTGG+TGG 0.468734 tig0028560:+47957 None:intergenic
TGGGTCATCCTTGGAGTTAG+AGG 0.469156 tig0028560:+40445 None:intergenic
TAGGCTCATTGATTTGGTCA+AGG 0.472707 tig0028560:+48481 None:intergenic
TACCAGCATCACCATTCATC+AGG 0.473503 tig0028560:+40243 None:intergenic
TTAATGAAATCCCTGTGTCC+GGG 0.473933 tig0028560:+48989 None:intergenic
AGTCCAAATGGGTAAGGAAA+AGG 0.474535 tig0028560:-49272 Msa1438490:five_prime_UTR
AGGCTCATTGATTTGGTCAA+GGG 0.475242 tig0028560:+48482 None:intergenic
GGTTTATAAACTACGTACTC+TGG 0.475822 tig0028560:+50283 None:intergenic
AACTTGTTACTAAGATTGAT+AGG 0.478352 tig0028560:-48053 Msa1438490:five_prime_UTR
TAGCCATTTCCAATCTGGCC+AGG 0.481484 tig0028560:+48126 None:intergenic
TCACCATTGACATTGCTCTC+TGG 0.481623 tig0028560:-49054 Msa1438490:five_prime_UTR
TAGGCTCGTTGATTTGGTCA+AGG 0.482009 tig0028560:+40759 None:intergenic
TTAAGCTCTTAAGTCCAAAT+GGG 0.483320 tig0028560:-49283 Msa1438490:five_prime_UTR
ACAATCAGCTTGGGATGTTC+CGG 0.483792 tig0028560:+48955 None:intergenic
TGTAAAGTTAGCGGCCTCCT+TGG 0.484480 tig0028560:+40421 None:intergenic
AGCTTGTTACCAAGATTGAT+AGG 0.488333 tig0028560:-40301 Msa1438490:CDS
TACAAACCTTGACTGGTACA+AGG 0.490199 tig0028560:-48523 Msa1438490:five_prime_UTR
TCATCCTATTTGAAGAAGGT+TGG 0.491235 tig0028560:-48615 Msa1438490:five_prime_UTR
AGACTTCAGTCAAGTATGCC+TGG 0.493195 tig0028560:-41616 Msa1438490:CDS
GATTGATAGGCGTTCTGGTA+AGG 0.495592 tig0028560:-48040 Msa1438490:five_prime_UTR
ATCTCCCTCAAAACCAGAGA+TGG 0.496573 tig0028560:+48563 None:intergenic
CATCAAGGCTGTGGAGAAGA+AGG 0.499167 tig0028560:-47863 Msa1438490:five_prime_UTR
CAGAATGTCTACAAGTTTGG+AGG 0.499933 tig0028560:-40701 Msa1438490:CDS
AAGCACCAATACAGGAATCA+AGG 0.500537 tig0028560:+41423 None:intergenic
CTGACCATCCTTAGAAATAC+CGG 0.501461 tig0028560:+48892 None:intergenic
AGTTTCATCCTATTTGAAGA+AGG 0.501588 tig0028560:-48619 Msa1438490:five_prime_UTR
ATCATTGATTCCACTACTGG+TGG 0.502099 tig0028560:-48923 Msa1438490:five_prime_UTR
GAGGTGTGGCAGTCAAGAAC+AGG 0.504238 tig0028560:+48099 None:intergenic
TGCACTGTCATTGATGTCCC+TGG 0.505435 tig0028560:-41509 Msa1438490:CDS
CTTCAGTTGTCAGTCCAGTA+GGG 0.506099 tig0028560:+48331 None:intergenic
AATTTCATCATATCTACCCT+TGG 0.508007 tig0028560:+48650 None:intergenic
AATGACAGTGCAGTAGTACT+TGG 0.509426 tig0028560:+49018 None:intergenic
AGTCGGAGGGGCTTGTCTGA+AGG 0.510894 tig0028560:+40731 None:intergenic
CTCTTAAGTCCAAATGGGTA+AGG 0.512110 tig0028560:-49278 Msa1438490:five_prime_UTR
AGTCTGCTAAAGTCCTCCAC+TGG 0.513823 tig0028560:+40085 None:intergenic
AGCAGGATGATCTATTCACT+TGG 0.514214 tig0028560:-47786 Msa1438490:exon
AGGCTCGTTGATTTGGTCAA+GGG 0.514470 tig0028560:+40760 None:intergenic
TGAGAACGGCACAATCAGCT+TGG 0.516820 tig0028560:+48945 None:intergenic
AGGAATTGGAACTGTGCCTG+TGG 0.517140 tig0028560:-48403 Msa1438490:five_prime_UTR
GATCACTTGAGATGTAAAGT+TGG 0.519518 tig0028560:+48161 None:intergenic
GAGGTGTGGCAGTGAAGAAC+AGG 0.519789 tig0028560:+40347 None:intergenic
ACTTTAGCTGTCAGTCCAGT+AGG 0.521394 tig0028560:+40608 None:intergenic
GAAGAAGAAGTGAACCGAGC+AGG 0.523086 tig0028560:-47803 Msa1438490:five_prime_UTR
GAACAAAAGCTATGAGATGA+AGG 0.523844 tig0028560:+47742 None:intergenic
GTGAACAAGGCGTCCACCAT+AGG 0.526823 tig0028560:+40560 None:intergenic
GAGCCCAAATTCTTGAAGAA+TGG 0.528480 tig0028560:-48006 Msa1438490:five_prime_UTR
TCCCACATTGTCACCAGGAA+GGG 0.528721 tig0028560:+48269 None:intergenic
AGTCGGAGGGGCTTGTCTGA+AGG 0.529275 tig0028560:+48453 None:intergenic
AAGCCCAAATTCCTGATGAA+TGG 0.529635 tig0028560:-40254 Msa1438490:CDS
GAGAACGGCACAATCAGCTT+GGG 0.529995 tig0028560:+48946 None:intergenic
GGTCACCTGATCTACAAACT+TGG 0.530032 tig0028560:-41695 Msa1438490:CDS
TGTTGGGGTCATCAAGGCTG+TGG 0.532596 tig0028560:-47872 Msa1438490:five_prime_UTR
GTGAAGAACGAACGGTAGTA+GGG 0.534571 tig0028560:+50244 None:intergenic
CAGGATGTCTACAAGATTGG+AGG 0.535636 tig0028560:-48423 Msa1438490:five_prime_UTR
CATCACGGCTGTGGAGAAGA+AGG 0.535804 tig0028560:-40111 Msa1438490:CDS
GGAATTGGAACTGTGCCTGT+GGG 0.536194 tig0028560:-48402 Msa1438490:five_prime_UTR
GAGACTGGTGTCTTGAAACC+TGG 0.536851 tig0028560:-40650 Msa1438490:CDS
GATTGATAGGCGTTCTGGTA+GGG 0.537919 tig0028560:-40288 Msa1438490:CDS
CCTGTGGGACGTGTTGAGAC+TGG 0.537981 tig0028560:-40665 Msa1438490:CDS
CTTTAGCTGTCAGTCCAGTA+GGG 0.538115 tig0028560:+40609 None:intergenic
CTTCCAGAGAGCAATGTCAA+TGG 0.541189 tig0028560:+49051 None:intergenic
ATTAAATCTCACATAGTCGC+CGG 0.542013 tig0028560:+40511 None:intergenic
AGCAAACTTGACAGCAATGT+GGG 0.543557 tig0028560:+48077 None:intergenic
TTCTCTGAATATCCTCCACT+TGG 0.543785 tig0028560:-40179 Msa1438490:CDS
TCATTGGCGATGTCGACTCT+GGG 0.543884 tig0028560:-41733 Msa1438490:CDS
TGCACTGTCATTGATGCCCC+CGG 0.544718 tig0028560:-49007 Msa1438490:five_prime_UTR
GCCCCTCCGACTACCACTAC+AGG 0.545601 tig0028560:-48442 Msa1438490:five_prime_UTR
CACTTGATCTACAAGCTTGG+AGG 0.545798 tig0028560:-49190 Msa1438490:five_prime_UTR
TCAAGGGCCTCAAGAAGAGT+TGG 0.546278 tig0028560:+48498 None:intergenic
TGTGGCTGTTGGGGTCATCA+AGG 0.547535 tig0028560:-47878 Msa1438490:five_prime_UTR
GTCTGCTTAAGTCCTCCACT+GGG 0.549538 tig0028560:+47838 None:intergenic
AGTTAGCGGCCTCCTTGGCT+GGG 0.551707 tig0028560:+40426 None:intergenic
GGCTTCAAAACCACCAGTAG+TGG 0.551737 tig0028560:+48913 None:intergenic
GCTTGTCCCTGACAGTAAAA+CGG 0.552331 tig0028560:+40156 None:intergenic
AGATTGATAGGCGTTCTGGT+AGG 0.554210 tig0028560:-40289 Msa1438490:CDS
GGTCACTTGATCTACAAGCT+TGG 0.555547 tig0028560:-49193 Msa1438490:five_prime_UTR
CCAGTCTCGACACGCCCCAC+AGG 0.557031 tig0028560:+48387 None:intergenic
TCAACCACCATGGGCTTGGT+GGG 0.557624 tig0028560:+47958 None:intergenic
ATCACACTTGACAGCAATGT+GGG 0.559060 tig0028560:+40325 None:intergenic
AAGCAAGGAGAGCATGTTCA+CGG 0.559179 tig0028560:+48867 None:intergenic
TCATTGGCCATGTCGACTCT+GGG 0.559180 tig0028560:-49231 Msa1438490:five_prime_UTR
CTCAAGGCTGAACGTGAAAG+AGG 0.559327 tig0028560:-49079 Msa1438490:five_prime_UTR
TTCTTGAAGAATGGTGATGC+TGG 0.561159 tig0028560:-47997 Msa1438490:five_prime_UTR
GAAGCCGGTATTTCTAAGGA+TGG 0.564413 tig0028560:-48896 Msa1438490:five_prime_UTR
TCTGGGAAATCAACCACCAC+TGG 0.564990 tig0028560:-49214 Msa1438490:five_prime_UTR
TTGGACCCTTGTACCAGTCA+AGG 0.565802 tig0028560:+48517 None:intergenic
ACAAACCTTGACTGGTACAA+GGG 0.567625 tig0028560:-48522 Msa1438490:five_prime_UTR
CACCTGATCTACAAACTTGG+AGG 0.568965 tig0028560:-41692 Msa1438490:CDS
TCAACCACCATCGGCATGGT+GGG 0.569853 tig0028560:+40206 None:intergenic
TAATGAAATCCCTGTGTCCG+GGG 0.570266 tig0028560:+48990 None:intergenic
ATGCGTCAAACTGTGGCTGT+TGG 0.571110 tig0028560:-47889 Msa1438490:five_prime_UTR
TTCATTAAGAACATGATCAC+CGG 0.572337 tig0028560:-48974 Msa1438490:five_prime_UTR
AGCAAGGAGAGCATGTTCAC+GGG 0.572470 tig0028560:+48868 None:intergenic
GACTTGAGATGTAAAGTTAG+CGG 0.574731 tig0028560:+40412 None:intergenic
TTCCTGATGAATGGTGATGC+TGG 0.575455 tig0028560:-40245 Msa1438490:CDS
GAGAAAGTCTCAACCACCAT+GGG 0.575954 tig0028560:+47949 None:intergenic
GAAGCTAGCATGTCCAGGGA+TGG 0.576146 tig0028560:-41398 Msa1438490:CDS
CTTGAGCTTGTCAAGGACCC+AGG 0.577041 tig0028560:+49096 None:intergenic
AGCGCTCTACAAACCTTGAC+TGG 0.578233 tig0028560:-48530 Msa1438490:five_prime_UTR
ATTCTGAAGCGGTAGTCGGA+GGG 0.580221 tig0028560:+40718 None:intergenic
TATCTACCCTTGGAGTACTT+GGG 0.580849 tig0028560:+48660 None:intergenic
GAGAAAGTCTCAACCACCAT+CGG 0.581032 tig0028560:+40197 None:intergenic
GCGTCAAACTGTGGCTGTTG+GGG 0.582443 tig0028560:-47887 Msa1438490:five_prime_UTR
ATCCTGTAGTGGTAGTCGGA+GGG 0.583230 tig0028560:+48440 None:intergenic
GTAGGGTTTATATATAAACA+AGG 0.583652 tig0028560:+50261 None:intergenic
TGTTGGTGTCATCACGGCTG+TGG 0.584289 tig0028560:-40120 Msa1438490:CDS
TTAAATCTCACATAGTCGCC+GGG 0.584341 tig0028560:+40512 None:intergenic
CTTCGAGTAAGAAATGTCAA+TGG 0.585142 tig0028560:+41553 None:intergenic
ATCCCACATTGTCACCAGGA+AGG 0.585536 tig0028560:+48268 None:intergenic
GAGACTGGTGTCATAAAACC+TGG 0.585699 tig0028560:-48372 Msa1438490:five_prime_UTR
CTGGGTCCTTGACAAGCTCA+AGG 0.585742 tig0028560:-49095 Msa1438490:five_prime_UTR
AGTTGGCAGATTCCTTGGCT+GGG 0.586600 tig0028560:+48178 None:intergenic
GGCCCTTCCTGGTGACAATG+TGG 0.586985 tig0028560:-48271 Msa1438490:five_prime_UTR
TTGATTTCCCAGAGTCGACA+TGG 0.588973 tig0028560:+49224 None:intergenic
CTATGTTGCCTCTAACTCCA+AGG 0.589207 tig0028560:-40453 Msa1438490:CDS
CTGTTAAGGATCTCAAGCGT+GGG 0.589274 tig0028560:-48227 Msa1438490:five_prime_UTR
CCAGTCTCAACACGTCCCAC+AGG 0.589278 tig0028560:+40665 None:intergenic
TCCTGTAGTGGTAGTCGGAG+GGG 0.589369 tig0028560:+48441 None:intergenic
TGGTGTCTTGAAACCTGGAA+TGG 0.590307 tig0028560:-40645 Msa1438490:CDS
GTCTGCTAAAGTCCTCCACT+GGG 0.590439 tig0028560:+40086 None:intergenic
TTCTCTGAATATCCTCCACT+CGG 0.591172 tig0028560:-47931 Msa1438490:five_prime_UTR
GCCCTTCCTGGTGACAATGT+GGG 0.592402 tig0028560:-48270 Msa1438490:five_prime_UTR
CCGGGAAGGTACTCCGTCGG+AGG 0.592556 tig0028560:+40530 None:intergenic
CTGGATCCTTGACAAGCTCA+AGG 0.592768 tig0028560:-41597 Msa1438490:CDS
CTCCAAGGATGACCCAGCCA+AGG 0.595225 tig0028560:-48190 Msa1438490:five_prime_UTR
AGCAAGGAGAACTTGTTCCA+TGG 0.595909 tig0028560:+41370 None:intergenic
ATCTCACATAGTCGCCGGGA+AGG 0.596745 tig0028560:+40516 None:intergenic
TTCTGAAGCGGTAGTCGGAG+GGG 0.597002 tig0028560:+40719 None:intergenic
TCTGGGAAGTCAACTACCAC+CGG 0.597549 tig0028560:-41716 Msa1438490:CDS
TAGGGTTTATATATAAACAA+GGG 0.598049 tig0028560:+50262 None:intergenic
TAGATATGATGAAATTGTGA+AGG 0.599770 tig0028560:-48643 Msa1438490:five_prime_UTR
GCATGTCTCTAACAGCAAAA+CGG 0.600985 tig0028560:+47908 None:intergenic
AGACATTCTGAAGCGGTAGT+CGG 0.601657 tig0028560:+40714 None:intergenic
CTCCAAGGATGACCCAGCCA+AGG 0.604300 tig0028560:-40438 Msa1438490:CDS
GCGTTCATTCAAGTATGCCT+GGG 0.605879 tig0028560:-49113 Msa1438490:five_prime_UTR
GATGATTCCCACCAAGCCCA+TGG 0.606444 tig0028560:-47965 Msa1438490:five_prime_UTR
TCTCCCTCAAAACCAGAGAT+GGG 0.607478 tig0028560:+48564 None:intergenic
GATGATTCCCACCATGCCGA+TGG 0.607531 tig0028560:-40213 Msa1438490:CDS
GTCCAGGGATGGCCAGACCA+TGG 0.608617 tig0028560:-41387 Msa1438490:CDS
CATTCTGAAGCGGTAGTCGG+AGG 0.611063 tig0028560:+40717 None:intergenic
CTCAACCACCATCGGCATGG+TGG 0.611307 tig0028560:+40205 None:intergenic
TACTACACCCAAGTACTCCA+AGG 0.613862 tig0028560:-48667 Msa1438490:five_prime_UTR
GGTTCGTTACCTTGTGACGA+AGG 0.614137 tig0028560:+50158 None:intergenic
AAGTTTGTAGATCAGGTGAC+CGG 0.615425 tig0028560:+41697 None:intergenic
TCATTAAGAACATGATCACT+GGG 0.616929 tig0028560:-41475 Msa1438490:CDS
ACAGTAAAACGGCCAAGTGG+AGG 0.618271 tig0028560:+40167 None:intergenic
TATGAGTTGTGAAGAACGAA+CGG 0.620255 tig0028560:+50236 None:intergenic
TCACACCAAGAGTGAAAGCA+AGG 0.621193 tig0028560:+48852 None:intergenic
GTTCAGCCTTGAGCTTGTCA+AGG 0.621463 tig0028560:+41591 None:intergenic
GCTGTTAAGGATCTCAAGCG+TGG 0.622485 tig0028560:-48228 Msa1438490:five_prime_UTR
TTCAGTTGTCAGTCCAGTAG+GGG 0.622733 tig0028560:+48332 None:intergenic
CAAGGGTCCAACTCTTCTTG+AGG 0.623175 tig0028560:-48505 Msa1438490:five_prime_UTR
AGCCATTTCCAATCTGGCCA+GGG 0.623271 tig0028560:+48127 None:intergenic
GATGCACGATAAACCTATGG+TGG 0.623909 tig0028560:-40573 Msa1438490:CDS
GACAACTGAAGTCAAGTCTG+TGG 0.624055 tig0028560:-48319 Msa1438490:five_prime_UTR
AGACATCCTGTAGTGGTAGT+CGG 0.624076 tig0028560:+48436 None:intergenic
ACAGCAAAACGGCCGAGTGG+AGG 0.624787 tig0028560:+47919 None:intergenic
TTGACAAGCGTGTCATCGAG+AGG 0.625348 tig0028560:-49165 Msa1438490:five_prime_UTR
TGGTGTCATAAAACCTGGAA+TGG 0.625384 tig0028560:-48367 Msa1438490:five_prime_UTR
AGTCTCAACCACCATCGGCA+TGG 0.625823 tig0028560:+40202 None:intergenic
TCACGCCAAGAGTGAAAGCA+AGG 0.625940 tig0028560:+41354 None:intergenic
GCAGGATGATCTATTCACTT+GGG 0.628034 tig0028560:-47785 Msa1438490:exon
GTTCAGCCTTGAGCTTGTCA+AGG 0.628494 tig0028560:+49089 None:intergenic
GGAGATGCACGATAAACCTA+TGG 0.628686 tig0028560:-40576 Msa1438490:CDS
GTATGTTGCCTCAAACTCCA+AGG 0.633897 tig0028560:-48205 Msa1438490:five_prime_UTR
AAGCGTCAAACTGTGGCTGT+TGG 0.635052 tig0028560:-40137 Msa1438490:CDS
GACAGCTAAAGTCACGTCTG+TGG 0.638212 tig0028560:-40597 Msa1438490:CDS
CATCCTGTAGTGGTAGTCGG+AGG 0.640179 tig0028560:+48439 None:intergenic
CAGCAAACTTGACAGCAATG+TGG 0.640811 tig0028560:+48076 None:intergenic
AGAGAAAGTCTCAACCACCA+TGG 0.641605 tig0028560:+47948 None:intergenic
TTCTGGTAAGGAGATTGAGA+AGG 0.643722 tig0028560:-48028 Msa1438490:five_prime_UTR
GAATTGGAACTGTGCCTGTG+GGG 0.644316 tig0028560:-48401 Msa1438490:five_prime_UTR
AGTGGAATCAATGATGAGAA+CGG 0.644693 tig0028560:+48931 None:intergenic
TGTCTTGAAACCTGGAATGG+AGG 0.645931 tig0028560:-40642 Msa1438490:CDS
AACTTGTAGACATTCTGAAG+CGG 0.647943 tig0028560:+40707 None:intergenic
TGTGGCTGTTGGTGTCATCA+CGG 0.648036 tig0028560:-40126 Msa1438490:CDS
CAAGGATGACCCAGCCAAGG+AGG 0.648083 tig0028560:-40435 Msa1438490:CDS
AGTGAATAGATCATCCTGCT+CGG 0.649458 tig0028560:+47789 None:intergenic
TGACAGCAATGTGGGAGGTG+TGG 0.650950 tig0028560:+40333 None:intergenic
TGACAGCAATGTGGGAGGTG+TGG 0.650950 tig0028560:+48085 None:intergenic
GATGTTAAGGATCTCAAGAG+TGG 0.651493 tig0028560:-40476 Msa1438490:CDS
GATTCCCACCATGCCGATGG+TGG 0.651793 tig0028560:-40210 Msa1438490:CDS
TTTAGCTGTCAGTCCAGTAG+GGG 0.651902 tig0028560:+40610 None:intergenic
TTAAATCCCACATTGTCACC+AGG 0.657091 tig0028560:+48264 None:intergenic
ATCTTGTAGACATCCTGTAG+TGG 0.657887 tig0028560:+48429 None:intergenic
AATGATCTGCTGTTGCAACA+AGG 0.659392 tig0028560:-48825 Msa1438490:intron
CAGGGACAAGCGTCAAACTG+TGG 0.660617 tig0028560:-40144 Msa1438490:CDS
TTTGTAGATCAGGTGACCGG+TGG 0.660704 tig0028560:+41700 None:intergenic
CATCACACTTGACAGCAATG+TGG 0.661173 tig0028560:+40324 None:intergenic
AATGAAATCCCTGTGTCCGG+GGG 0.661737 tig0028560:+48991 None:intergenic
TCGCCGGGAAGGTACTCCGT+CGG 0.666337 tig0028560:+40527 None:intergenic
GAGAAGAAGGATCCCAGTGG+AGG 0.667988 tig0028560:-40098 Msa1438490:CDS
GAGAAGAAGGATCCCAGTGG+AGG 0.667988 tig0028560:-47850 Msa1438490:five_prime_UTR
AAAGGTTCACATCAACATTG+TGG 0.675059 tig0028560:-49254 Msa1438490:five_prime_UTR
GTCGTCGTCATGAATCACCC+TGG 0.677445 tig0028560:-40392 Msa1438490:CDS
ACTACACCCAAGTACTCCAA+GGG 0.678033 tig0028560:-48666 Msa1438490:five_prime_UTR
CTTGTAGATCAAGTGACCAG+TGG 0.682705 tig0028560:+49198 None:intergenic
GAAACCCTAGTTGAGTAGCA+AGG 0.685158 tig0028560:+50204 None:intergenic
TAGAGACATGCGTCAAACTG+TGG 0.690315 tig0028560:-47896 Msa1438490:five_prime_UTR
CTAACAGCAAAACGGCCGAG+TGG 0.692072 tig0028560:+47916 None:intergenic
AGGAATTGGAACTGTACCTG+TGG 0.693222 tig0028560:-40681 Msa1438490:CDS
AAACTTGACAGCAATGTGGG+AGG 0.695398 tig0028560:+48080 None:intergenic
GTAGATCAAGTGACCAGTGG+TGG 0.699002 tig0028560:+49201 None:intergenic
GTGATCATAATGAATCACCC+TGG 0.699056 tig0028560:-48144 Msa1438490:five_prime_UTR
CTGACAGTAAAACGGCCAAG+TGG 0.702953 tig0028560:+40164 None:intergenic
ACACTTGACAGCAATGTGGG+AGG 0.707816 tig0028560:+40328 None:intergenic
GATTCCCACCAAGCCCATGG+TGG 0.723849 tig0028560:-47962 Msa1438490:five_prime_UTR
GTGGAGAAGAAGGATCCCAG+TGG 0.734762 tig0028560:-40101 Msa1438490:CDS
GTGGAGAAGAAGGATCCCAG+TGG 0.734762 tig0028560:-47853 Msa1438490:five_prime_UTR
GGAATTGGAACTGTACCTGT+GGG 0.747552 tig0028560:-40680 Msa1438490:CDS
GCATCATGAAGCTCTCACAG+AGG 0.758446 tig0028560:-48292 Msa1438490:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTATGATGATATAATAA+TGG + tig0028560:40563-40582 None:intergenic 10.0%
!! TAATCATATGTAAAATAAAT+AGG - tig0028560:43096-43115 Msa1438490:intron 10.0%
!! TAAATCAATATTATTTCATA+TGG + tig0028560:44607-44626 None:intergenic 10.0%
!! TTAACAAATTCTTATAAAAA+CGG + tig0028560:46574-46593 None:intergenic 10.0%
!!! CAAATTTTTTTATTTTGTTT+TGG - tig0028560:49243-49262 Msa1438490:five_prime_UTR 10.0%
!! TTATTATATACTTGTTTGTT+TGG - tig0028560:40600-40619 Msa1438490:CDS 15.0%
!!! TATTACTTAATTTGTTATGA+AGG - tig0028560:40710-40729 Msa1438490:CDS 15.0%
!! AATAAAATATACAACTTCAA+GGG + tig0028560:41621-41640 None:intergenic 15.0%
!! TAATAAAATATACAACTTCA+AGG + tig0028560:41622-41641 None:intergenic 15.0%
!! TATAAGAAAAAATTGAGTAT+GGG + tig0028560:43441-43460 None:intergenic 15.0%
!!! GAACTTATCTTTTTTTTTTT+TGG - tig0028560:43509-43528 Msa1438490:intron 15.0%
!!! TTCTAAATAGTTTTTCTTAT+AGG - tig0028560:45396-45415 Msa1438490:intron 15.0%
!!! TCTAAATAGTTTTTCTTATA+GGG - tig0028560:45397-45416 Msa1438490:intron 15.0%
!!! TTTTTCTCAAATGATAAAAA+AGG + tig0028560:46479-46498 None:intergenic 15.0%
!!! TTTTATTTACCCTAATTAAT+TGG - tig0028560:47909-47928 Msa1438490:five_prime_UTR 15.0%
!! AAGAAATTTATAAAAGGAAA+AGG + tig0028560:48026-48045 None:intergenic 15.0%
!! TTGTAGAAGAAATTTATAAA+AGG + tig0028560:48032-48051 None:intergenic 15.0%
!!! ACATTCAGTTTAAATTTTTA+TGG + tig0028560:49212-49231 None:intergenic 15.0%
!! ACAAAATAAAAAAATTTGTG+AGG + tig0028560:49241-49260 None:intergenic 15.0%
!! TAGGGTTTATATATAAACAA+GGG + tig0028560:40144-40163 None:intergenic 20.0%
!! GTATTACTTAATTCATGTTT+GGG - tig0028560:40732-40751 Msa1438490:CDS 20.0%
!!! TTAAAGTGAATTATGGATTA+TGG + tig0028560:40921-40940 None:intergenic 20.0%
!!! CATTAGTTTAAAGTGAATTA+TGG + tig0028560:40928-40947 None:intergenic 20.0%
!! ATAAAATATACAACTTCAAG+GGG + tig0028560:41620-41639 None:intergenic 20.0%
!!! TTATTTTTGTGTTTATTCCT+TGG - tig0028560:42831-42850 Msa1438490:intron 20.0%
!!! GTTTGGTTTGATATATAATA+GGG + tig0028560:42955-42974 None:intergenic 20.0%
!!! AGTTTGGTTTGATATATAAT+AGG + tig0028560:42956-42975 None:intergenic 20.0%
!!! TTGCAAGAGAAATTATTTTT+TGG - tig0028560:43132-43151 Msa1438490:intron 20.0%
!!! TTTTTCTAAAGAGAGATAAA+CGG + tig0028560:43414-43433 None:intergenic 20.0%
!! GTATAAGAAAAAATTGAGTA+TGG + tig0028560:43442-43461 None:intergenic 20.0%
!! TTTATTGTGTATTATTAGTC+AGG - tig0028560:44576-44595 Msa1438490:intron 20.0%
!! TTATTGTGTATTATTAGTCA+GGG - tig0028560:44577-44596 Msa1438490:intron 20.0%
!!! TTTTTTAATATAGAAGCTGA+AGG + tig0028560:45590-45609 None:intergenic 20.0%
!! AAAAAATCTCATTAATGAGT+TGG - tig0028560:46308-46327 Msa1438490:intron 20.0%
!! TATAAGATGAGAACTTTAAA+TGG - tig0028560:46357-46376 Msa1438490:intron 20.0%
!!! AATTTTGAAAATCAAAATGG+CGG + tig0028560:46725-46744 None:intergenic 20.0%
!!! TGCAATTTTGAAAATCAAAA+TGG + tig0028560:46728-46747 None:intergenic 20.0%
!!! ATTTTGATTTTCAAAATTGC+AGG - tig0028560:46727-46746 Msa1438490:intron 20.0%
!!! TTTTGATTTTCAAAATTGCA+GGG - tig0028560:46728-46747 Msa1438490:intron 20.0%
!!! GTTAATTTTTTCATCAACTT+AGG + tig0028560:46771-46790 None:intergenic 20.0%
!! ATAACAAAAAATGTTGAAGA+AGG - tig0028560:46855-46874 Msa1438490:intron 20.0%
!! TTTAACATATAGATCAGATA+AGG + tig0028560:47047-47066 None:intergenic 20.0%
!! TTGATGTTTAGATCAATAAT+TGG - tig0028560:47536-47555 Msa1438490:intron 20.0%
!! AAACAAATCCAAGAAATATT+CGG + tig0028560:47775-47794 None:intergenic 20.0%
!!! TCATTTAACATGTGTTTTTT+TGG - tig0028560:47854-47873 Msa1438490:five_prime_UTR 20.0%
!!! CATTTAACATGTGTTTTTTT+GGG - tig0028560:47855-47874 Msa1438490:five_prime_UTR 20.0%
!! TAATTAGGGTAAATAAAACA+TGG + tig0028560:47907-47926 None:intergenic 20.0%
!! GATGAAATTAAAATTTGTGA+AGG + tig0028560:47993-48012 None:intergenic 20.0%
!! AAAAGAAACCTTTGTAAAAA+AGG + tig0028560:48069-48088 None:intergenic 20.0%
!! TTATCTAGAGATAATATGAA+TGG - tig0028560:48094-48113 Msa1438490:five_prime_UTR 20.0%
!! GAACACTAAAAAAAAACATT+CGG - tig0028560:48480-48499 Msa1438490:five_prime_UTR 20.0%
!!! CTTACTTTTATTTTTCTCTT+TGG - tig0028560:48556-48575 Msa1438490:five_prime_UTR 20.0%
!!! TATTGTTTTCTTTGTTGAAT+TGG - tig0028560:48592-48611 Msa1438490:five_prime_UTR 20.0%
!! CAAAATTCGCTATATTTATA+GGG + tig0028560:49181-49200 None:intergenic 20.0%
!! TCAAAATTCGCTATATTTAT+AGG + tig0028560:49182-49201 None:intergenic 20.0%
! GTAGGGTTTATATATAAACA+AGG + tig0028560:40145-40164 None:intergenic 25.0%
! TTGAGAAGAAAAGATATTGA+AGG + tig0028560:40281-40300 None:intergenic 25.0%
! ATGATGATATAATAATGGCA+TGG + tig0028560:40558-40577 None:intergenic 25.0%
! TTTGTTTGGTATTCAATCAT+TGG - tig0028560:40614-40633 Msa1438490:CDS 25.0%
! TGTGTTCATACTTATGTATA+TGG - tig0028560:40665-40684 Msa1438490:CDS 25.0%
! GTGTTCATACTTATGTATAT+GGG - tig0028560:40666-40685 Msa1438490:CDS 25.0%
! TGTTCATACTTATGTATATG+GGG - tig0028560:40667-40686 Msa1438490:CDS 25.0%
! GGTATTACTTAATTCATGTT+TGG - tig0028560:40731-40750 Msa1438490:CDS 25.0%
!! CCATAAAGATTTTATGCAAT+GGG - tig0028560:40823-40842 Msa1438490:intron 25.0%
!! CATAAAGATTTTATGCAATG+GGG - tig0028560:40824-40843 Msa1438490:intron 25.0%
! TAGATATGATGAAATTGTGA+AGG - tig0028560:41760-41779 Msa1438490:CDS 25.0%
!!! AACTTGTTACTAAGATTGAT+AGG - tig0028560:42350-42369 Msa1438490:intron 25.0%
! TTATATATCAAACCAAACTC+AGG - tig0028560:42957-42976 Msa1438490:intron 25.0%
! TAATAGTTTGAATTGAACCA+AGG + tig0028560:43055-43074 None:intergenic 25.0%
! ATGTAAAATAAATAGGATCC+AGG - tig0028560:43103-43122 Msa1438490:intron 25.0%
! ACTAAGAGAAATAAATGTAG+TGG + tig0028560:43203-43222 None:intergenic 25.0%
! TAGTGACAATGAACAAAAAT+AGG - tig0028560:43219-43238 Msa1438490:intron 25.0%
!!! TAGTTTTGATCTCATTATTC+AGG + tig0028560:43254-43273 None:intergenic 25.0%
!! TAGAACTATGATTAGCTATT+TGG + tig0028560:43365-43384 None:intergenic 25.0%
!! TAGTTCTATCAAATTGTTTC+TGG - tig0028560:43377-43396 Msa1438490:intron 25.0%
!!! TTTTCTAAAGAGAGATAAAC+GGG + tig0028560:43413-43432 None:intergenic 25.0%
!!! TCTCTCAGTAATTTTTTTAG+AGG - tig0028560:43580-43599 Msa1438490:intron 25.0%
!!! ATGGTCTTATTAGGTTTTTT+TGG - tig0028560:43895-43914 Msa1438490:intron 25.0%
! AAAATCGGTCTTTAAATAAG+AGG - tig0028560:43940-43959 Msa1438490:intron 25.0%
! AAAATGAATATGTTGTGGAA+TGG + tig0028560:44308-44327 None:intergenic 25.0%
! CTAGTAAAATGAATATGTTG+TGG + tig0028560:44313-44332 None:intergenic 25.0%
!! CACAACATATTCATTTTACT+AGG - tig0028560:44311-44330 Msa1438490:intron 25.0%
!! AACATATTCATTTTACTAGG+AGG - tig0028560:44314-44333 Msa1438490:intron 25.0%
! AAGCATTTCAACTATTATAG+AGG + tig0028560:44366-44385 None:intergenic 25.0%
!!! TTTAGTTTGTTTTTGCTGTT+TGG - tig0028560:44468-44487 Msa1438490:intron 25.0%
! TATAAAGCTCATAAAATAGC+TGG + tig0028560:44711-44730 None:intergenic 25.0%
! TTTCTCATGATAGTACTAAA+TGG + tig0028560:44960-44979 None:intergenic 25.0%
!! TTGAAGAAAGTGTAAACATT+CGG - tig0028560:44985-45004 Msa1438490:intron 25.0%
! TGATAATTACTCTATCATGA+AGG + tig0028560:45071-45090 None:intergenic 25.0%
! AAATGAGTAATTACAATCAC+CGG - tig0028560:45313-45332 Msa1438490:intron 25.0%
! TCAATCGTTTAGTTATTTAC+CGG + tig0028560:45335-45354 None:intergenic 25.0%
! AACGATTGATATATCTGATA+TGG - tig0028560:45346-45365 Msa1438490:intron 25.0%
! AAGTCATAAAATACCAATGA+AGG - tig0028560:45441-45460 Msa1438490:intron 25.0%
! AAAGATACTTCAACTTACTT+TGG + tig0028560:45541-45560 None:intergenic 25.0%
! CTAGCAAAATGAATATGTTT+GGG - tig0028560:46144-46163 Msa1438490:intron 25.0%
! TAGCAAAATGAATATGTTTG+GGG - tig0028560:46145-46164 Msa1438490:intron 25.0%
! GGAAATACATATGAAAATTG+AGG + tig0028560:46176-46195 None:intergenic 25.0%
!!! AGGAGTTTTATCTTCAATTT+TGG - tig0028560:46230-46249 Msa1438490:intron 25.0%
! GGATTACTCAAAGTTTAATA+TGG + tig0028560:46704-46723 None:intergenic 25.0%
! AAAAAATGTTGAAGAAGGTT+TGG - tig0028560:46860-46879 Msa1438490:intron 25.0%
!! TTTGAAATGACAAATCAAGT+TGG + tig0028560:47145-47164 None:intergenic 25.0%
! GGAAAAAAGCAATATGTTTA+GGG + tig0028560:47493-47512 None:intergenic 25.0%
! GTTTAGATCAATAATTGGAA+TGG - tig0028560:47541-47560 Msa1438490:intron 25.0%
! ACACACAAACTTCTATAAAT+TGG + tig0028560:47609-47628 None:intergenic 25.0%
!! TCAAGTACAATATTTTTCTG+TGG + tig0028560:47665-47684 None:intergenic 25.0%
! TATATAGTCCGAATATTTCT+TGG - tig0028560:47764-47783 Msa1438490:CDS 25.0%
!! GAATATTTCTTGGATTTGTT+TGG - tig0028560:47774-47793 Msa1438490:CDS 25.0%
! TAAATAAAACATGGTCAAAG+TGG + tig0028560:47898-47917 None:intergenic 25.0%
! TGTTGAAGCAAATATGATTT+AGG - tig0028560:48147-48166 Msa1438490:five_prime_UTR 25.0%
! GTTGAAGCAAATATGATTTA+GGG - tig0028560:48148-48167 Msa1438490:five_prime_UTR 25.0%
! AGATAATACTCTATGATCTT+AGG - tig0028560:48364-48383 Msa1438490:five_prime_UTR 25.0%
! GATAATACTCTATGATCTTA+GGG - tig0028560:48365-48384 Msa1438490:five_prime_UTR 25.0%
! AAAATATACATTGACAAGAG+AGG + tig0028560:48509-48528 None:intergenic 25.0%
! AAGATTAACATTGTTGTCAT+TGG - tig0028560:48654-48673 Msa1438490:five_prime_UTR 25.0%
!! TAATGAAATTTTTGTGTCCA+GGG + tig0028560:48914-48933 None:intergenic 25.0%
!! TTAATGAAATTTTTGTGTCC+AGG + tig0028560:48915-48934 None:intergenic 25.0%
! AAATATGCATCTTCTTCAAA+GGG + tig0028560:49122-49141 None:intergenic 25.0%
! ACATTCATATGAACATTAAG+TGG + tig0028560:49279-49298 None:intergenic 25.0%
! GATATTGAAGGATTTAGAGT+TGG + tig0028560:40269-40288 None:intergenic 30.0%
!! TGAACTTTTGAAAGAGTTGA+TGG - tig0028560:40489-40508 Msa1438490:CDS 30.0%
GGCTAACAAATATATGTCAA+AGG + tig0028560:40805-40824 None:intergenic 30.0%
! GCCATAAAGATTTTATGCAA+TGG - tig0028560:40822-40841 Msa1438490:intron 30.0%
CCCATTGCATAAAATCTTTA+TGG + tig0028560:40826-40845 None:intergenic 30.0%
! AATTATGGATTATGGAGATG+CGG + tig0028560:40913-40932 None:intergenic 30.0%
! GTTTTCTGTGCTGAAAATAA+TGG - tig0028560:41080-41099 Msa1438490:intron 30.0%
TTTAAGCTCTTAAGTCCAAA+TGG - tig0028560:41119-41138 Msa1438490:intron 30.0%
TTAAGCTCTTAAGTCCAAAT+GGG - tig0028560:41120-41139 Msa1438490:intron 30.0%
TTCATTAAGAACATGATCAC+CGG - tig0028560:41429-41448 Msa1438490:CDS 30.0%
AATTTCATCATATCTACCCT+TGG + tig0028560:41756-41775 None:intergenic 30.0%
AGTTTCATCCTATTTGAAGA+AGG - tig0028560:41784-41803 Msa1438490:CDS 30.0%
! GAACAAATGGAATTTTGTCT+GGG + tig0028560:41820-41839 None:intergenic 30.0%
TCACCATTCTTCAAGAATTT+GGG + tig0028560:42403-42422 None:intergenic 30.0%
ATCACCATTCTTCAAGAATT+TGG + tig0028560:42404-42423 None:intergenic 30.0%
AAAACTTAAACATCACACCA+AGG + tig0028560:42851-42870 None:intergenic 30.0%
!! TGTGATGTTTAAGTTTTTGC+TGG - tig0028560:42854-42873 Msa1438490:intron 30.0%
!! GTGATGTTTAAGTTTTTGCT+GGG - tig0028560:42855-42874 Msa1438490:intron 30.0%
!! TGATGTTTAAGTTTTTGCTG+GGG - tig0028560:42856-42875 Msa1438490:intron 30.0%
AAAAATGATCCTGACATTCT+AGG + tig0028560:42914-42933 None:intergenic 30.0%
ATATAATAGGGTAAACGATC+AGG + tig0028560:42943-42962 None:intergenic 30.0%
ATTTAACCAAGATGACTTTG+TGG - tig0028560:43004-43023 Msa1438490:intron 30.0%
TTTCTCTTGCAAAATAATCC+TGG + tig0028560:43124-43143 None:intergenic 30.0%
! AACTATGATTAGCTATTTGG+TGG + tig0028560:43362-43381 None:intergenic 30.0%
! TTTCTAAAGAGAGATAAACG+GGG + tig0028560:43412-43431 None:intergenic 30.0%
CTTTACATGACAATTCACAA+TGG - tig0028560:43876-43895 Msa1438490:intron 30.0%
!! CAATTCACAATGGTCTTATT+AGG - tig0028560:43886-43905 Msa1438490:intron 30.0%
!!! GATATCCTTTTTTCTATCGT+CGG + tig0028560:44023-44042 None:intergenic 30.0%
ACTTTGTAGGCATTATGAAA+TGG + tig0028560:44091-44110 None:intergenic 30.0%
TTCATAATGCCTACAAAGTT+TGG - tig0028560:44092-44111 Msa1438490:intron 30.0%
GAGATCAAACTAACTTCAAA+CGG + tig0028560:44133-44152 None:intergenic 30.0%
CATCTTATATATCTTGACAC+TGG - tig0028560:44154-44173 Msa1438490:intron 30.0%
GTAAAATCTCATCAATGAGT+TGG + tig0028560:44192-44211 None:intergenic 30.0%
! ACCATTTGAAGCAATACAAA+TGG - tig0028560:44213-44232 Msa1438490:intron 30.0%
TCCATTTGTATTGCTTCAAA+TGG + tig0028560:44217-44236 None:intergenic 30.0%
ATGATGTGTGGAAATACATA+TGG - tig0028560:44272-44291 Msa1438490:intron 30.0%
CAACTATTATAGAGGTGATT+GGG + tig0028560:44358-44377 None:intergenic 30.0%
TCAACTATTATAGAGGTGAT+TGG + tig0028560:44359-44378 None:intergenic 30.0%
!!! TTTTTGCTGTTTGGAATGTA+TGG - tig0028560:44477-44496 Msa1438490:intron 30.0%
CAACAGACATGATATACTTT+AGG + tig0028560:44555-44574 None:intergenic 30.0%
!! AAAACTGAATAAAGGCATCA+AGG + tig0028560:44817-44836 None:intergenic 30.0%
TCAAGCAGAAAACTGAATAA+AGG + tig0028560:44825-44844 None:intergenic 30.0%
TATTCCTTATTCCTAAGTTG+AGG - tig0028560:44853-44872 Msa1438490:intron 30.0%
AATACCTCAACTTAGGAATA+AGG + tig0028560:44860-44879 None:intergenic 30.0%
CACGAGACTTAATGATATTA+TGG - tig0028560:45476-45495 Msa1438490:intron 30.0%
!! TAGTTTATGCCATAGTTTTG+AGG - tig0028560:45761-45780 Msa1438490:intron 30.0%
TATCCCTATGTTATAGTTTG+TGG + tig0028560:45909-45928 None:intergenic 30.0%
AACCAAACTAACTTAGGAAA+GGG - tig0028560:46035-46054 Msa1438490:intron 30.0%
! AACATATTCATTTTGCTAGG+AGG + tig0028560:46143-46162 None:intergenic 30.0%
! CCAAACATATTCATTTTGCT+AGG + tig0028560:46146-46165 None:intergenic 30.0%
CCTAGCAAAATGAATATGTT+TGG - tig0028560:46143-46162 Msa1438490:intron 30.0%
AAAATGAATATGTTTGGGGA+TGG - tig0028560:46149-46168 Msa1438490:intron 30.0%
TAAAACTCCTCGAGAATAAA+TGG + tig0028560:46220-46239 None:intergenic 30.0%
! CATTTGAAGCAATACAGATT+CGG + tig0028560:46286-46305 None:intergenic 30.0%
AGATGAGAACTTTAAATGGT+TGG - tig0028560:46361-46380 Msa1438490:intron 30.0%
!! ATTGTCCTCTAAAGTATGAA+TGG - tig0028560:46425-46444 Msa1438490:intron 30.0%
! TTTCAGTTATTTCCATTACC+TGG + tig0028560:46681-46700 None:intergenic 30.0%
!!! CTCACATCTAATTAGTTTTG+AGG - tig0028560:46790-46809 Msa1438490:intron 30.0%
TAATACAACTGTGTGAAACA+AGG - tig0028560:46982-47001 Msa1438490:intron 30.0%
GTAAAACACACAAAAGATCA+TGG - tig0028560:47004-47023 Msa1438490:intron 30.0%
!! ATCTTTGAAATATCCGACTA+AGG - tig0028560:47113-47132 Msa1438490:intron 30.0%
! ACTATACCGACTAAATATCA+AGG - tig0028560:47164-47183 Msa1438490:intron 30.0%
TCATGTCCTTGATATTTAGT+CGG + tig0028560:47173-47192 None:intergenic 30.0%
! ATGTTTAGGGTTCATATTGA+TGG + tig0028560:47480-47499 None:intergenic 30.0%
GGGAAAAAAGCAATATGTTT+AGG + tig0028560:47494-47513 None:intergenic 30.0%
! ATGGTCATGATTATTTGTTG+TGG - tig0028560:47560-47579 Msa1438490:intron 30.0%
TTATAGAAGTTTGTGTGTCA+TGG - tig0028560:47611-47630 Msa1438490:intron 30.0%
GCTAAAACTCATACTTTGTA+GGG + tig0028560:47722-47741 None:intergenic 30.0%
TGCTAAAACTCATACTTTGT+AGG + tig0028560:47723-47742 None:intergenic 30.0%
GTGTAACGACCAATTAATTA+GGG + tig0028560:47921-47940 None:intergenic 30.0%
AGTGTAACGACCAATTAATT+AGG + tig0028560:47922-47941 None:intergenic 30.0%
!! AGGATGAGAAGGTATTTATA+GGG + tig0028560:47973-47992 None:intergenic 30.0%
!! AAGGATGAGAAGGTATTTAT+AGG + tig0028560:47974-47993 None:intergenic 30.0%
AAAATTTGTGAAGGATGAGA+AGG + tig0028560:47984-48003 None:intergenic 30.0%
!!! ACCATTGACCTTTTTTACAA+AGG - tig0028560:48058-48077 Msa1438490:five_prime_UTR 30.0%
ACCTTTGTAAAAAAGGTCAA+TGG + tig0028560:48062-48081 None:intergenic 30.0%
TCAGAAAGGCAACAAAAAAA+AGG + tig0028560:48219-48238 None:intergenic 30.0%
!! CGCTGTATTTTTAAATTTCG+TGG - tig0028560:48303-48322 Msa1438490:five_prime_UTR 30.0%
!! ATTCAAAGGCATTAAATAGC+AGG + tig0028560:48407-48426 None:intergenic 30.0%
! CAGATCTTTTTGTGTTTTCA+AGG - tig0028560:48615-48634 Msa1438490:five_prime_UTR 30.0%
!! TTTGTGTTTTCAAGGACAAA+TGG - tig0028560:48623-48642 Msa1438490:five_prime_UTR 30.0%
!! TTGTGTTTTCAAGGACAAAT+GGG - tig0028560:48624-48643 Msa1438490:five_prime_UTR 30.0%
TTCATTAAGAACATGATCAC+TGG - tig0028560:41429-41448 Msa1438490:CDS 30.0%
TCATTAAGAACATGATCACT+GGG - tig0028560:48928-48947 Msa1438490:five_prime_UTR 30.0%
CAAATATGCATCTTCTTCAA+AGG + tig0028560:49123-49142 None:intergenic 30.0%
TGAACATTAAGTGGTCATTA+AGG + tig0028560:49270-49289 None:intergenic 30.0%
AGTTTCATCCTATTTGAAGA+AGG - tig0028560:41784-41803 Msa1438490:CDS 30.0%
CGTACTCTGGATTATTTAGA+TGG + tig0028560:40110-40129 None:intergenic 35.0%
GGTTTATAAACTACGTACTC+TGG + tig0028560:40123-40142 None:intergenic 35.0%
TATGAGTTGTGAAGAACGAA+CGG + tig0028560:40170-40189 None:intergenic 35.0%
!! ACCATCATCGATTCATTCAT+AGG - tig0028560:40322-40341 Msa1438490:CDS 35.0%
ACCTATGAATGAATCGATGA+TGG + tig0028560:40326-40345 None:intergenic 35.0%
! TTGGTATTCAATCATTGGCT+TGG - tig0028560:40619-40638 Msa1438490:CDS 35.0%
! GGGTTTTCTATCTGTTATGA+AGG - tig0028560:40687-40706 Msa1438490:CDS 35.0%
! ATTATGGATTATGGAGATGC+GGG + tig0028560:40912-40931 None:intergenic 35.0%
TATTTCAGCAGATATAGAGC+AGG + tig0028560:40974-40993 None:intergenic 35.0%
TCTGCTGAAATATAGTGACA+TGG - tig0028560:40982-41001 Msa1438490:intron 35.0%
AAAGGTTCACATCAACATTG+TGG - tig0028560:41149-41168 Msa1438490:intron 35.0%
AGTGGAATCAATGATGAGAA+CGG + tig0028560:41475-41494 None:intergenic 35.0%
!!! TTTTGAAGCCGGTATTTCTA+AGG - tig0028560:41503-41522 Msa1438490:CDS 35.0%
ATCCATCTGTTCAAGATAGA+TGG + tig0028560:41714-41733 None:intergenic 35.0%
TCATCCTATTTGAAGAAGGT+TGG - tig0028560:41788-41807 Msa1438490:CDS 35.0%
ATAGCCAACCTTCTTCAAAT+AGG + tig0028560:41795-41814 None:intergenic 35.0%
! GGAACAAATGGAATTTTGTC+TGG + tig0028560:41821-41840 None:intergenic 35.0%
! TGTCAAGAATGTTGCTGTTA+AGG - tig0028560:42162-42181 Msa1438490:intron 35.0%
GATCACTTGAGATGTAAAGT+TGG + tig0028560:42245-42264 None:intergenic 35.0%
GAACAAAAGCTATGAGATGA+AGG + tig0028560:42664-42683 None:intergenic 35.0%
! ATAGCTTTTGTTCTCAGAAC+TGG - tig0028560:42671-42690 Msa1438490:intron 35.0%
! TAGCTTTTGTTCTCAGAACT+GGG - tig0028560:42672-42691 Msa1438490:intron 35.0%
ATATTGTTGCCTAGAATGTC+AGG - tig0028560:42902-42921 Msa1438490:intron 35.0%
AGTTTATTGTTGCCTGAGTT+TGG + tig0028560:42972-42991 None:intergenic 35.0%
AGTCATCTTGGTTAAATAGC+AGG + tig0028560:43001-43020 None:intergenic 35.0%
GGTCCATCAATTTCATAGTT+GGG + tig0028560:43182-43201 None:intergenic 35.0%
TGGTCCATCAATTTCATAGT+TGG + tig0028560:43183-43202 None:intergenic 35.0%
!! CCTTAACTCTAAGTTTGTTG+TGG + tig0028560:43309-43328 None:intergenic 35.0%
CCACAACAAACTTAGAGTTA+AGG - tig0028560:43306-43325 Msa1438490:intron 35.0%
! TGATTAGCTATTTGGTGGAT+TGG + tig0028560:43357-43376 None:intergenic 35.0%
GTGAATTGTCATGTAAAGCT+AGG + tig0028560:43874-43893 None:intergenic 35.0%
GTCAGACTTTATTCAACGTA+AGG - tig0028560:43984-44003 Msa1438490:intron 35.0%
TTTCTCCGACGATAGAAAAA+AGG - tig0028560:44015-44034 Msa1438490:intron 35.0%
TCAAACTAACTTCAAACGGT+TGG + tig0028560:44129-44148 None:intergenic 35.0%
!! TATATCTTGACACTGGTTCT+TGG - tig0028560:44161-44180 Msa1438490:intron 35.0%
ATGTATGGATTTCCTTTGAC+AGG - tig0028560:44492-44511 Msa1438490:intron 35.0%
ATTCACTTCATTCCTGTCAA+AGG + tig0028560:44507-44526 None:intergenic 35.0%
!! CTTCTGAAATACCTCAACTT+AGG + tig0028560:44867-44886 None:intergenic 35.0%
! CTAAGTTGAGGTATTTCAGA+AGG - tig0028560:44865-44884 Msa1438490:intron 35.0%
TAGTACTAAATGGAGGAGTA+AGG + tig0028560:44950-44969 None:intergenic 35.0%
CTCATGATAGTACTAAATGG+AGG + tig0028560:44957-44976 None:intergenic 35.0%
ATAAGCGATGTAGCAAGTTT+AGG + tig0028560:45126-45145 None:intergenic 35.0%
!!! CATGACTCTTATTTTTCGCT+TGG - tig0028560:45170-45189 Msa1438490:intron 35.0%
! TACTGCATCCATTGTTGTTA+TGG - tig0028560:45225-45244 Msa1438490:intron 35.0%
GTTTCCAACCATAACAACAA+TGG + tig0028560:45236-45255 None:intergenic 35.0%
TGTTGTTATGGTTGGAAACA+AGG - tig0028560:45237-45256 Msa1438490:intron 35.0%
! TGGTTGGAAACAAGGTATTA+TGG - tig0028560:45245-45264 Msa1438490:intron 35.0%
! TTGGAAACAAGGTATTATGG+TGG - tig0028560:45248-45267 Msa1438490:intron 35.0%
! TGGAAACAAGGTATTATGGT+GGG - tig0028560:45249-45268 Msa1438490:intron 35.0%
CACAAAAGGACTTCATACAT+AGG - tig0028560:45277-45296 Msa1438490:intron 35.0%
TAAGTCTCGTGCTAAAAAGA+GGG + tig0028560:45467-45486 None:intergenic 35.0%
TTAAGTCTCGTGCTAAAAAG+AGG + tig0028560:45468-45487 None:intergenic 35.0%
! TTACTTTGGTTTCATCGTCT+CGG + tig0028560:45527-45546 None:intergenic 35.0%
AAACTAAATGTTGATGCTGC+AGG + tig0028560:45747-45766 None:intergenic 35.0%
TGGAAATCTCCTCAAAACTA+TGG + tig0028560:45773-45792 None:intergenic 35.0%
! TTTTTCACAATCACTTCCAC+CGG - tig0028560:45845-45864 Msa1438490:intron 35.0%
GCTTGAACTGAAAGATATAC+CGG + tig0028560:45867-45886 None:intergenic 35.0%
GTTCAAGCATTTCCTATTTC+TGG - tig0028560:45879-45898 Msa1438490:intron 35.0%
! CCTATGTTATAGTTTGTGGT+GGG + tig0028560:45905-45924 None:intergenic 35.0%
CCACCACAAACTATAACATA+GGG - tig0028560:45903-45922 Msa1438490:intron 35.0%
!! GAAGGTGATTTTAGCACTTT+TGG + tig0028560:45981-46000 None:intergenic 35.0%
GAAGAGAACCAAACTAACTT+AGG - tig0028560:46029-46048 Msa1438490:intron 35.0%
GAACCAAACTAACTTAGGAA+AGG - tig0028560:46034-46053 Msa1438490:intron 35.0%
! ATTGACCACGCTTTTATGTT+GGG + tig0028560:46062-46081 None:intergenic 35.0%
! TATTGACCACGCTTTTATGT+TGG + tig0028560:46063-46082 None:intergenic 35.0%
!! TGAAGTCATGTTTGTTGTCT+CGG + tig0028560:46098-46117 None:intergenic 35.0%
ATAAGAGTAGCAGTGAAGTA+TGG + tig0028560:46197-46216 None:intergenic 35.0%
CTCTTATCCATTTATTCTCG+AGG - tig0028560:46210-46229 Msa1438490:intron 35.0%
CGAATCTGTATTGCTTCAAA+TGG - tig0028560:46284-46303 Msa1438490:intron 35.0%
CATCTTATATCTCATGACAC+TGG + tig0028560:46346-46365 None:intergenic 35.0%
! ACTTTAAATGGTTGGTTACG+AGG - tig0028560:46369-46388 Msa1438490:intron 35.0%
!! TCCTCTAAAGTATGAATGGT+AGG - tig0028560:46429-46448 Msa1438490:intron 35.0%
AAAGGATATCTCTAGACTGT+AGG + tig0028560:46461-46480 None:intergenic 35.0%
AAAATATATCGCGTTCTACC+AGG - tig0028560:46660-46679 Msa1438490:intron 35.0%
TGAGGTTGAGTTAGAAAGAT+CGG - tig0028560:46808-46827 Msa1438490:intron 35.0%
ACACACAAAAGATCATGGAT+CGG - tig0028560:47009-47028 Msa1438490:intron 35.0%
! CAAAAAAGTTTGATTCGACC+AGG + tig0028560:47090-47109 None:intergenic 35.0%
CTGGACATTTATAGTTGAGT+CGG - tig0028560:47217-47236 Msa1438490:intron 35.0%
ACATTTATAGTTGAGTCGGT+CGG - tig0028560:47221-47240 Msa1438490:intron 35.0%
TCGTTCATGAGCTTCATAAT+TGG - tig0028560:47326-47345 Msa1438490:intron 35.0%
TTTCCCATTGTAGTAAACTG+CGG - tig0028560:47508-47527 Msa1438490:intron 35.0%
TCGGACTATATAACCTGAAT+TGG + tig0028560:47756-47775 None:intergenic 35.0%
!! GGATGAGAAGGTATTTATAG+GGG + tig0028560:47972-47991 None:intergenic 35.0%
TCAACAAAATCTAGAGAGTG+AGG + tig0028560:48133-48152 None:intergenic 35.0%
TAGAAAAAGATGAGTCTACG+TGG - tig0028560:48181-48200 Msa1438490:five_prime_UTR 35.0%
ACTGTGAAACTTGATAGACA+AGG - tig0028560:48446-48465 Msa1438490:five_prime_UTR 35.0%
!! TTTTCAAGGACAAATGGGTA+AGG - tig0028560:48629-48648 Msa1438490:five_prime_UTR 35.0%
CTTCGAGTAAGAAATGTCAA+TGG + tig0028560:48853-48872 None:intergenic 35.0%
CTTATCCTTGATTCCTGTAT+TGG - tig0028560:48975-48994 Msa1438490:five_prime_UTR 35.0%
!! TTTTTGCTATCTTGAGCAGA+TGG - tig0028560:49436-49455 Msa1438490:intron 35.0%
TCATCCTATTTGAAGAAGGT+TGG - tig0028560:41788-41807 Msa1438490:CDS 35.0%
ATAGCCAACCTTCTTCAAAT+AGG + tig0028560:41795-41814 None:intergenic 35.0%
! GAACAAATGGAACGTTTTCT+GGG + tig0028560:49541-49560 None:intergenic 35.0%
! AACTTGTAGACATTCTGAAG+CGG + tig0028560:49699-49718 None:intergenic 35.0%
CTTCAGAATGTCTACAAGTT+TGG - tig0028560:49699-49718 Msa1438490:intron 35.0%
ATTAAATCTCACATAGTCGC+CGG + tig0028560:49895-49914 None:intergenic 35.0%
TGTTGAGAACGTTGATGTTA+AGG - tig0028560:49914-49933 Msa1438490:intron 35.0%
GACTTGAGATGTAAAGTTAG+CGG + tig0028560:49994-50013 None:intergenic 35.0%
!! AGCTTGTTACCAAGATTGAT+AGG - tig0028560:50102-50121 Msa1438490:intron 35.0%
TCACCATTCATCAGGAATTT+GGG + tig0028560:50155-50174 None:intergenic 35.0%
ATCACCATTCATCAGGAATT+TGG + tig0028560:50156-50175 None:intergenic 35.0%
TCATTCCTTGCTACTCAACT+AGG - tig0028560:40194-40213 Msa1438490:CDS 40.0%
CATTCCTTGCTACTCAACTA+GGG - tig0028560:40195-40214 Msa1438490:CDS 40.0%
! TTATGGATTATGGAGATGCG+GGG + tig0028560:40911-40930 None:intergenic 40.0%
CTCTTAAGTCCAAATGGGTA+AGG - tig0028560:41125-41144 Msa1438490:intron 40.0%
AGTCCAAATGGGTAAGGAAA+AGG - tig0028560:41131-41150 Msa1438490:intron 40.0%
! GAACCTTTTCCTTACCCATT+TGG + tig0028560:41137-41156 None:intergenic 40.0%
CACATCAACATTGTGGTCAT+TGG - tig0028560:41156-41175 Msa1438490:intron 40.0%
AATGACAGTGCAGTAGTACT+TGG + tig0028560:41388-41407 None:intergenic 40.0%
TTAATGAAATCCCTGTGTCC+GGG + tig0028560:41417-41436 None:intergenic 40.0%
CTTAATGAAATCCCTGTGTC+CGG + tig0028560:41418-41437 None:intergenic 40.0%
!! CTCATCATTGATTCCACTAC+TGG - tig0028560:41477-41496 Msa1438490:CDS 40.0%
!! ATCATTGATTCCACTACTGG+TGG - tig0028560:41480-41499 Msa1438490:CDS 40.0%
CTGACCATCCTTAGAAATAC+CGG + tig0028560:41514-41533 None:intergenic 40.0%
AATGATCTGCTGTTGCAACA+AGG - tig0028560:41578-41597 Msa1438490:intron 40.0%
TGCCATCTATCTTGAACAGA+TGG - tig0028560:41709-41728 Msa1438490:CDS 40.0%
! TATCTACCCTTGGAGTACTT+GGG + tig0028560:41746-41765 None:intergenic 40.0%
! ATATCTACCCTTGGAGTACT+TGG + tig0028560:41747-41766 None:intergenic 40.0%
ATTCCATTTGTTCCCATCTC+TGG - tig0028560:41827-41846 Msa1438490:intron 40.0%
AAACCAGAGATGGGAACAAA+TGG + tig0028560:41833-41852 None:intergenic 40.0%
TACAAACCTTGACTGGTACA+AGG - tig0028560:41880-41899 Msa1438490:intron 40.0%
ACAAACCTTGACTGGTACAA+GGG - tig0028560:41881-41900 Msa1438490:intron 40.0%
!! AGGCTCATTGATTTGGTCAA+GGG + tig0028560:41924-41943 None:intergenic 40.0%
!! TAGGCTCATTGATTTGGTCA+AGG + tig0028560:41925-41944 None:intergenic 40.0%
ACCAAATCAATGAGCCTAAG+AGG - tig0028560:41927-41946 Msa1438490:intron 40.0%
ATCTTGTAGACATCCTGTAG+TGG + tig0028560:41977-41996 None:intergenic 40.0%
CTACAGGATGTCTACAAGAT+TGG - tig0028560:41977-41996 Msa1438490:intron 40.0%
GTCTACAAGATTGGAGGAAT+TGG - tig0028560:41986-42005 Msa1438490:intron 40.0%
!! TGGTGTCATAAAACCTGGAA+TGG - tig0028560:42036-42055 Msa1438490:intron 40.0%
TTAAATCCCACATTGTCACC+AGG + tig0028560:42142-42161 None:intergenic 40.0%
TGTAAAGTTGGCAGATTCCT+TGG + tig0028560:42233-42252 None:intergenic 40.0%
GTGATCATAATGAATCACCC+TGG - tig0028560:42259-42278 Msa1438490:intron 40.0%
AGCAAACTTGACAGCAATGT+GGG + tig0028560:42329-42348 None:intergenic 40.0%
ACTAAGATTGATAGGCGTTC+TGG - tig0028560:42358-42377 Msa1438490:intron 40.0%
TTCTGGTAAGGAGATTGAGA+AGG - tig0028560:42375-42394 Msa1438490:intron 40.0%
GAGCCCAAATTCTTGAAGAA+TGG - tig0028560:42397-42416 Msa1438490:intron 40.0%
! TTCTTGAAGAATGGTGATGC+TGG - tig0028560:42406-42425 Msa1438490:intron 40.0%
TTCTCTGAATATCCTCCACT+CGG - tig0028560:42472-42491 Msa1438490:intron 40.0%
GCATGTCTCTAACAGCAAAA+CGG + tig0028560:42498-42517 None:intergenic 40.0%
! CTTCTTCTTCAATGCTGACT+TGG + tig0028560:42590-42609 None:intergenic 40.0%
AGTGAATAGATCATCCTGCT+CGG + tig0028560:42617-42636 None:intergenic 40.0%
AGCAGGATGATCTATTCACT+TGG - tig0028560:42617-42636 Msa1438490:intron 40.0%
GCAGGATGATCTATTCACTT+GGG - tig0028560:42618-42637 Msa1438490:intron 40.0%
!! TTTAAGTTTTTGCTGGGGCA+TGG - tig0028560:42861-42880 Msa1438490:intron 40.0%
! GGCATGGTTCTATATGGTTT+AGG - tig0028560:42877-42896 Msa1438490:intron 40.0%
TGAATTGAACCAAGGTCTTG+CGG + tig0028560:43047-43066 None:intergenic 40.0%
GCTCCCAACTATGAAATTGA+TGG - tig0028560:43176-43195 Msa1438490:intron 40.0%
TTGAGTTCCTCAAGCATCAA+TGG - tig0028560:44237-44256 Msa1438490:intron 40.0%
! AGAAGACTTGTGATGATGTG+TGG - tig0028560:44260-44279 Msa1438490:intron 40.0%
ACGAGATTCCTTATTCCCTA+CGG - tig0028560:44775-44794 Msa1438490:intron 40.0%
!!! AGTGTTTTTGGTTTGCCGTA+GGG + tig0028560:44793-44812 None:intergenic 40.0%
AATGGAGGAGTAAGGTTGAA+TGG + tig0028560:44942-44961 None:intergenic 40.0%
ATCATTGCCATCCATTAACC+TGG - tig0028560:45087-45106 Msa1438490:intron 40.0%
AGCAAGTTTAGGAGATACCT+TGG + tig0028560:45115-45134 None:intergenic 40.0%
! AGAGTGTCACTATTGAGAGA+AGG + tig0028560:45197-45216 None:intergenic 40.0%
! GCATCCATTGTTGTTATGGT+TGG - tig0028560:45229-45248 Msa1438490:intron 40.0%
! ACAAGGTATTATGGTGGGAA+CGG - tig0028560:45254-45273 Msa1438490:intron 40.0%
CGTAGAATTTGCATTGGAGT+TGG + tig0028560:45614-45633 None:intergenic 40.0%
AGCCACGACTTCATTTAATG+AGG + tig0028560:45683-45702 None:intergenic 40.0%
CTACATGATAAGTGGGGAAT+TGG + tig0028560:45720-45739 None:intergenic 40.0%
ATTCCCCACTTATCATGTAG+TGG - tig0028560:45720-45739 Msa1438490:intron 40.0%
AGGTCCACTACATGATAAGT+GGG + tig0028560:45727-45746 None:intergenic 40.0%
ATGAAACTCGTCCAGTTGTT+AGG + tig0028560:45796-45815 None:intergenic 40.0%
TATGCAAGACTGCACATTGA+TGG + tig0028560:45819-45838 None:intergenic 40.0%
TGAACTGAAAGATATACCGG+TGG + tig0028560:45864-45883 None:intergenic 40.0%
CCCACCACAAACTATAACAT+AGG - tig0028560:45902-45921 Msa1438490:intron 40.0%
! CCCTATGTTATAGTTTGTGG+TGG + tig0028560:45906-45925 None:intergenic 40.0%
AACTATTATGCAGGATCAGC+AGG + tig0028560:45950-45969 None:intergenic 40.0%
GCTGGAGAAAACTATTATGC+AGG + tig0028560:45959-45978 None:intergenic 40.0%
!! GTGATTTTAGCACTTTTGGC+TGG + tig0028560:45977-45996 None:intergenic 40.0%
!! GTCGACTTTGATAATGTGGA+AGG + tig0028560:45999-46018 None:intergenic 40.0%
!! TGGAGTCGACTTTGATAATG+TGG + tig0028560:46003-46022 None:intergenic 40.0%
! TTATCAAAGTCGACTCCAAG+AGG - tig0028560:46005-46024 Msa1438490:intron 40.0%
GTCCCTTTCCTAAGTTAGTT+TGG + tig0028560:46040-46059 None:intergenic 40.0%
GCCTACCATTCATACTTTAG+AGG + tig0028560:46433-46452 None:intergenic 40.0%
!!! GAGTGACACCTCTTGTTTTA+CGG - tig0028560:46547-46566 Msa1438490:intron 40.0%
!!! AGTGACACCTCTTGTTTTAC+GGG - tig0028560:46548-46567 Msa1438490:intron 40.0%
! CAGGTGCTACGAAGAAATTA+AGG + tig0028560:47071-47090 None:intergenic 40.0%
CTTAATTTCTTCGTAGCACC+TGG - tig0028560:47069-47088 Msa1438490:intron 40.0%
TTCGAAATGACCAATCGAGT+TGG + tig0028560:47264-47283 None:intergenic 40.0%
GGTTTGATGTCACACTATCT+GGG + tig0028560:47459-47478 None:intergenic 40.0%
TGGTTTGATGTCACACTATC+TGG + tig0028560:47460-47479 None:intergenic 40.0%
TAGCCGCAGTTTACTACAAT+GGG + tig0028560:47514-47533 None:intergenic 40.0%
TTAGCCGCAGTTTACTACAA+TGG + tig0028560:47515-47534 None:intergenic 40.0%
! CGTTGCATCGATAGTTTATG+TGG + tig0028560:47638-47657 None:intergenic 40.0%
CATAAACTATCGATGCAACG+TGG - tig0028560:47638-47657 Msa1438490:intron 40.0%
ACTCATACTTTGTAGGGTGA+TGG + tig0028560:47716-47735 None:intergenic 40.0%
GCACAGTCTTAAACCAATTC+AGG - tig0028560:47740-47759 Msa1438490:intron 40.0%
AAAGTGGCCTGATAAGTCAA+GGG + tig0028560:47882-47901 None:intergenic 40.0%
GAAGTCTTCTTCAAGGCAAA+AGG + tig0028560:48251-48270 None:intergenic 40.0%
TGACATGGAAGTCTTCTTCA+AGG + tig0028560:48258-48277 None:intergenic 40.0%
! GTACTGAGCAGTTGATTCAA+AGG + tig0028560:48421-48440 None:intergenic 40.0%
AAGTTTGTAGATCAGGTGAC+CGG + tig0028560:48709-48728 None:intergenic 40.0%
TGAGAAAGAAGCTGCTGAAA+TGG - tig0028560:48761-48780 Msa1438490:intron 40.0%
GAGAAAGAAGCTGCTGAAAT+GGG - tig0028560:48762-48781 Msa1438490:intron 40.0%
AAGCACCAATACAGGAATCA+AGG + tig0028560:48983-49002 None:intergenic 40.0%
!! AGCTTCAAAAGCACCAATAC+AGG + tig0028560:48991-49010 None:intergenic 40.0%
!!! TTTTGAAGCTAGCATGTCCA+GGG - tig0028560:49001-49020 Msa1438490:five_prime_UTR 40.0%
AATGATCTGCTGCTGTAACA+AGG - tig0028560:49076-49095 Msa1438490:five_prime_UTR 40.0%
AATCTCATCATACCTACCCT+TGG + tig0028560:49477-49496 None:intergenic 40.0%
TAGGTATGATGAGATTGTGG+AGG - tig0028560:49481-49500 Msa1438490:intron 40.0%
! GGAACAAATGGAACGTTTTC+TGG + tig0028560:49542-49561 None:intergenic 40.0%
AAACCAGAGATGGGAACAAA+TGG + tig0028560:41833-41852 None:intergenic 40.0%
TACAAACCTTGACTGGTACA+AGG - tig0028560:41880-41899 Msa1438490:intron 40.0%
ACAAACCTTGACTGGTACAA+GGG - tig0028560:41881-41900 Msa1438490:intron 40.0%
CAGAATGTCTACAAGTTTGG+AGG - tig0028560:49702-49721 Msa1438490:intron 40.0%
GTCTACAAGTTTGGAGGAAT+TGG - tig0028560:49708-49727 Msa1438490:intron 40.0%
TTAAATCTCACATAGTCGCC+GGG + tig0028560:49894-49913 None:intergenic 40.0%
GATGTTAAGGATCTCAAGAG+TGG - tig0028560:49927-49946 Msa1438490:intron 40.0%
!! AGCCATTTTCAATCTTGCCA+GGG + tig0028560:50031-50050 None:intergenic 40.0%
!! TAGCCATTTTCAATCTTGCC+AGG + tig0028560:50032-50051 None:intergenic 40.0%
ATCACACTTGACAGCAATGT+GGG + tig0028560:50081-50100 None:intergenic 40.0%
AAGCCCAAATTCCTGATGAA+TGG - tig0028560:50149-50168 Msa1438490:intron 40.0%
TTCTCTGAATATCCTCCACT+TGG - tig0028560:42472-42491 Msa1438490:intron 40.0%
GTGAAGAACGAACGGTAGTA+GGG + tig0028560:40162-40181 None:intergenic 45.0%
TGTGAAGAACGAACGGTAGT+AGG + tig0028560:40163-40182 None:intergenic 45.0%
GAAACCCTAGTTGAGTAGCA+AGG + tig0028560:40202-40221 None:intergenic 45.0%
ACCTTGTGACGAAGGAGAAA+AGG + tig0028560:40240-40259 None:intergenic 45.0%
CAATGGGGATGTAGCTCATA+TGG - tig0028560:40839-40858 Msa1438490:intron 45.0%
TTGATTTCCCAGAGTCGACA+TGG + tig0028560:41182-41201 None:intergenic 45.0%
CTTGTAGATCAAGTGACCAG+TGG + tig0028560:41208-41227 None:intergenic 45.0%
GGTCACTTGATCTACAAGCT+TGG - tig0028560:41210-41229 Msa1438490:intron 45.0%
CACTTGATCTACAAGCTTGG+AGG - tig0028560:41213-41232 Msa1438490:intron 45.0%
AGCGTTCATTCAAGTATGCC+TGG - tig0028560:41289-41308 Msa1438490:intron 45.0%
GCGTTCATTCAAGTATGCCT+GGG - tig0028560:41290-41309 Msa1438490:intron 45.0%
TCACCATTGACATTGCTCTC+TGG - tig0028560:41349-41368 Msa1438490:intron 45.0%
CTTCCAGAGAGCAATGTCAA+TGG + tig0028560:41355-41374 None:intergenic 45.0%
TAATGAAATCCCTGTGTCCG+GGG + tig0028560:41416-41435 None:intergenic 45.0%
ACAATCAGCTTGGGATGTTC+CGG + tig0028560:41451-41470 None:intergenic 45.0%
!!! ACTACTGGTGGTTTTGAAGC+CGG - tig0028560:41492-41511 Msa1438490:CDS 45.0%
! GAAGCCGGTATTTCTAAGGA+TGG - tig0028560:41507-41526 Msa1438490:CDS 45.0%
! AAGCAAGGAGAGCATGTTCA+CGG + tig0028560:41539-41558 None:intergenic 45.0%
TCACACCAAGAGTGAAAGCA+AGG + tig0028560:41554-41573 None:intergenic 45.0%
TACTACACCCAAGTACTCCA+AGG - tig0028560:41736-41755 Msa1438490:CDS 45.0%
ACTACACCCAAGTACTCCAA+GGG - tig0028560:41737-41756 Msa1438490:CDS 45.0%
!!! TGTTCCCATCTCTGGTTTTG+AGG - tig0028560:41835-41854 Msa1438490:intron 45.0%
!!! GTTCCCATCTCTGGTTTTGA+GGG - tig0028560:41836-41855 Msa1438490:intron 45.0%
TCTCCCTCAAAACCAGAGAT+GGG + tig0028560:41842-41861 None:intergenic 45.0%
ATCTCCCTCAAAACCAGAGA+TGG + tig0028560:41843-41862 None:intergenic 45.0%
! GCCTCTTAGGCTCATTGATT+TGG + tig0028560:41931-41950 None:intergenic 45.0%
AGACATCCTGTAGTGGTAGT+CGG + tig0028560:41970-41989 None:intergenic 45.0%
CAGGATGTCTACAAGATTGG+AGG - tig0028560:41980-41999 Msa1438490:intron 45.0%
!! GAGACTGGTGTCATAAAACC+TGG - tig0028560:42031-42050 Msa1438490:intron 45.0%
GCAAAAGTGACAACCATTCC+AGG + tig0028560:42052-42071 None:intergenic 45.0%
TTCAGTTGTCAGTCCAGTAG+GGG + tig0028560:42074-42093 None:intergenic 45.0%
CTTCAGTTGTCAGTCCAGTA+GGG + tig0028560:42075-42094 None:intergenic 45.0%
ACTTCAGTTGTCAGTCCAGT+AGG + tig0028560:42076-42095 None:intergenic 45.0%
GACAACTGAAGTCAAGTCTG+TGG - tig0028560:42084-42103 Msa1438490:intron 45.0%
CTGTTAAGGATCTCAAGCGT+GGG - tig0028560:42176-42195 Msa1438490:intron 45.0%
GTATGTTGCCTCAAACTCCA+AGG - tig0028560:42198-42217 Msa1438490:intron 45.0%
GAGCATAGCCATTTCCAATC+TGG + tig0028560:42285-42304 None:intergenic 45.0%
AAACTTGACAGCAATGTGGG+AGG + tig0028560:42326-42345 None:intergenic 45.0%
CAGCAAACTTGACAGCAATG+TGG + tig0028560:42330-42349 None:intergenic 45.0%
GATTGATAGGCGTTCTGGTA+AGG - tig0028560:42363-42382 Msa1438490:intron 45.0%
GAGAAAGTCTCAACCACCAT+GGG + tig0028560:42457-42476 None:intergenic 45.0%
AGAGAAAGTCTCAACCACCA+TGG + tig0028560:42458-42477 None:intergenic 45.0%
TAGAGACATGCGTCAAACTG+TGG - tig0028560:42507-42526 Msa1438490:intron 45.0%
!! AGAACTGGGTTCTAGATCGA+CGG - tig0028560:42686-42705 Msa1438490:intron 45.0%
GTAAGCAAGCAGTAAGTTCC+AGG - tig0028560:42776-42795 Msa1438490:intron 45.0%
TTGCGGATATGCTACTACCT+AGG + tig0028560:43030-43049 None:intergenic 45.0%
!! AGCTATTTGGTGGATTGGAG+AGG + tig0028560:43352-43371 None:intergenic 45.0%
TGCCTACCATTCGTACTTGT+TGG - tig0028560:44050-44069 Msa1438490:intron 45.0%
GCCTACCATTCGTACTTGTT+GGG - tig0028560:44051-44070 Msa1438490:intron 45.0%
ACCCAACAAGTACGAATGGT+AGG + tig0028560:44055-44074 None:intergenic 45.0%
! TACCATTCGTACTTGTTGGG+TGG - tig0028560:44054-44073 Msa1438490:intron 45.0%
!! GTACTTGTTGGGTGGACTAT+TGG - tig0028560:44062-44081 Msa1438490:intron 45.0%
ACGAGGAGACCAAACTTTGT+AGG + tig0028560:46386-46405 None:intergenic 45.0%
! ACTTCAAACGGTTGGTTACG+AGG + tig0028560:44121-44140 None:intergenic 45.0%
GTCTTCTCCATTGATGCTTG+AGG + tig0028560:44247-44266 None:intergenic 45.0%
!! TTGGTTTGCCGTAGGGAATA+AGG + tig0028560:44786-44805 None:intergenic 45.0%
!!! CAGTGTTTTTGGTTTGCCGT+AGG + tig0028560:44794-44813 None:intergenic 45.0%
! AGGCATCAAGGCAGTGTTTT+TGG + tig0028560:44805-44824 None:intergenic 45.0%
AGACAACATCGACATGTCTC+AGG + tig0028560:44891-44910 None:intergenic 45.0%
CATGTCGATGTTGTCTCTTG+CGG - tig0028560:44895-44914 Msa1438490:intron 45.0%
GAGTAAGGTTGAATGGTGGT+TGG + tig0028560:44935-44954 None:intergenic 45.0%
ATACCTTGGCACCAGGTTAA+TGG + tig0028560:45101-45120 None:intergenic 45.0%
GCTAAAAAGAGGGCCTTCAT+TGG + tig0028560:45457-45476 None:intergenic 45.0%
CCTTGGCGTAGAATTTGCAT+TGG + tig0028560:45620-45639 None:intergenic 45.0%
CCAATGCAAATTCTACGCCA+AGG - tig0028560:45617-45636 Msa1438490:intron 45.0%
GGCCTCATTAAATGAAGTCG+TGG - tig0028560:45678-45697 Msa1438490:intron 45.0%
CATGATAAGTGGGGAATTGG+AGG + tig0028560:45717-45736 None:intergenic 45.0%
GGTCCACTACATGATAAGTG+GGG + tig0028560:45726-45745 None:intergenic 45.0%
CAGGTCCACTACATGATAAG+TGG + tig0028560:45728-45747 None:intergenic 45.0%
GGAGATTTCCACCTAACAAC+TGG - tig0028560:45782-45801 Msa1438490:intron 45.0%
AAACTCGTCCAGTTGTTAGG+TGG + tig0028560:45793-45812 None:intergenic 45.0%
TATTATGCAGGATCAGCAGG+AGG + tig0028560:45947-45966 None:intergenic 45.0%
!! GTTTGGTTCTCTTCTCCTCT+TGG + tig0028560:46023-46042 None:intergenic 45.0%
!! GTTTGTTGTCTCGGAGATGA+TGG + tig0028560:46089-46108 None:intergenic 45.0%
TATCTCATGACACTGGTGCT+TGG + tig0028560:46339-46358 None:intergenic 45.0%
ACGAGGAGACCAAACTTTGT+CGG - tig0028560:46386-46405 Msa1438490:intron 45.0%
AAAACGGCCCGTAAAACAAG+AGG + tig0028560:46558-46577 None:intergenic 45.0%
!! TCTCCTAGCTTTACATGGCA+GGG + tig0028560:46621-46640 None:intergenic 45.0%
!! TTCTCCTAGCTTTACATGGC+AGG + tig0028560:46622-46641 None:intergenic 45.0%
TGCCATGTAAAGCTAGGAGA+AGG - tig0028560:46621-46640 Msa1438490:intron 45.0%
!! GTCCTTCTCCTAGCTTTACA+TGG + tig0028560:46626-46645 None:intergenic 45.0%
TATCGCGTTCTACCAGGTAA+TGG - tig0028560:46666-46685 Msa1438490:intron 45.0%
AAGTTGGACGCTTCCTTAGT+CGG + tig0028560:47129-47148 None:intergenic 45.0%
ATGATTCTCACGTCGTCGTA+TGG - tig0028560:47189-47208 Msa1438490:intron 45.0%
TGATTCTCACGTCGTCGTAT+GGG - tig0028560:47190-47209 Msa1438490:intron 45.0%
GGCTGAGTCGACAATTGATT+TGG - tig0028560:47416-47435 Msa1438490:intron 45.0%
! TGTCACACTATCTGGGTTGA+AGG + tig0028560:47452-47471 None:intergenic 45.0%
CTATTGTCCACACTCTGAGT+TGG + tig0028560:47815-47834 None:intergenic 45.0%
TCAGAGTGTGGACAATAGCT+TGG - tig0028560:47817-47836 Msa1438490:five_prime_UTR 45.0%
TTTGGGTCCCTTGACTTATC+AGG - tig0028560:47872-47891 Msa1438490:five_prime_UTR 45.0%
CAAAGTGGCCTGATAAGTCA+AGG + tig0028560:47883-47902 None:intergenic 45.0%
CTTCCATGTCACATTCAGAC+AGG - tig0028560:48267-48286 Msa1438490:five_prime_UTR 45.0%
ATGCCTGTCTGAATGTGACA+TGG + tig0028560:48273-48292 None:intergenic 45.0%
GGTCACCTGATCTACAAACT+TGG - tig0028560:48708-48727 Msa1438490:intron 45.0%
CACCTGATCTACAAACTTGG+AGG - tig0028560:48711-48730 Msa1438490:intron 45.0%
CACCTCCAAGTTTGTAGATC+AGG + tig0028560:48716-48735 None:intergenic 45.0%
AGACTTCAGTCAAGTATGCC+TGG - tig0028560:48787-48806 Msa1438490:intron 45.0%
!!! CTTTTGAAGCTAGCATGTCC+AGG - tig0028560:49000-49019 Msa1438490:five_prime_UTR 45.0%
! AGCAAGGAGAACTTGTTCCA+TGG + tig0028560:49036-49055 None:intergenic 45.0%
GTTCTCCTTGCTTTCACTCT+TGG - tig0028560:49044-49063 Msa1438490:five_prime_UTR 45.0%
ATCTGCTGCTGTAACAAGGT+AGG - tig0028560:49080-49099 Msa1438490:five_prime_UTR 45.0%
GATGCCATTCAGTACTCCAA+GGG - tig0028560:49458-49477 Msa1438490:intron 45.0%
GGGTAGGTATGATGAGATTG+TGG - tig0028560:49478-49497 Msa1438490:intron 45.0%
GTTCCATTTGTTCCCATCTC+TGG - tig0028560:49548-49567 Msa1438490:intron 45.0%
!!! TGTTCCCATCTCTGGTTTTG+AGG - tig0028560:41835-41854 Msa1438490:intron 45.0%
!!! GTTCCCATCTCTGGTTTTGA+GGG - tig0028560:41836-41855 Msa1438490:intron 45.0%
TCTCCCTCAAAACCAGAGAT+GGG + tig0028560:41842-41861 None:intergenic 45.0%
ATCTCCCTCAAAACCAGAGA+TGG + tig0028560:41843-41862 None:intergenic 45.0%
!! AGGCTCGTTGATTTGGTCAA+GGG + tig0028560:49646-49665 None:intergenic 45.0%
!! TAGGCTCGTTGATTTGGTCA+AGG + tig0028560:49647-49666 None:intergenic 45.0%
ACCAAATCAACGAGCCTAAG+AGG - tig0028560:49649-49668 Msa1438490:intron 45.0%
!! AGACATTCTGAAGCGGTAGT+CGG + tig0028560:49692-49711 None:intergenic 45.0%
AGGAATTGGAACTGTACCTG+TGG - tig0028560:49722-49741 Msa1438490:intron 45.0%
GGAATTGGAACTGTACCTGT+GGG - tig0028560:49723-49742 Msa1438490:intron 45.0%
TGGTGTCTTGAAACCTGGAA+TGG - tig0028560:49758-49777 Msa1438490:intron 45.0%
TGTCTTGAAACCTGGAATGG+AGG - tig0028560:49761-49780 Msa1438490:intron 45.0%
GAAAAAGTCACCTCCATTCC+AGG + tig0028560:49774-49793 None:intergenic 45.0%
TTTAGCTGTCAGTCCAGTAG+GGG + tig0028560:49796-49815 None:intergenic 45.0%
CTTTAGCTGTCAGTCCAGTA+GGG + tig0028560:49797-49816 None:intergenic 45.0%
ACTTTAGCTGTCAGTCCAGT+AGG + tig0028560:49798-49817 None:intergenic 45.0%
GGAGATGCACGATAAACCTA+TGG - tig0028560:49827-49846 Msa1438490:intron 45.0%
GATGCACGATAAACCTATGG+TGG - tig0028560:49830-49849 Msa1438490:intron 45.0%
! CGGAGGTTTTTCTGTGAACA+AGG + tig0028560:49859-49878 None:intergenic 45.0%
GTTCACAGAAAAACCTCCGA+CGG - tig0028560:49860-49879 Msa1438490:intron 45.0%
CTATGTTGCCTCTAACTCCA+AGG - tig0028560:49950-49969 Msa1438490:intron 45.0%
CACCCTGGCAAGATTGAAAA+TGG - tig0028560:50026-50045 Msa1438490:intron 45.0%
CATCACACTTGACAGCAATG+TGG + tig0028560:50082-50101 None:intergenic 45.0%
ACCAAGATTGATAGGCGTTC+TGG - tig0028560:50110-50129 Msa1438490:intron 45.0%
ACCAGAACGCCTATCAATCT+TGG + tig0028560:42362-42381 None:intergenic 45.0%
AGATTGATAGGCGTTCTGGT+AGG - tig0028560:42362-42381 Msa1438490:intron 45.0%
GATTGATAGGCGTTCTGGTA+GGG - tig0028560:42363-42382 Msa1438490:intron 45.0%
! TTCCTGATGAATGGTGATGC+TGG - tig0028560:50158-50177 Msa1438490:intron 45.0%
TACCAGCATCACCATTCATC+AGG + tig0028560:50163-50182 None:intergenic 45.0%
GAGAAAGTCTCAACCACCAT+CGG + tig0028560:42457-42476 None:intergenic 45.0%
!! ACTTGGCCGTTTTACTGTCA+GGG - tig0028560:50241-50260 Msa1438490:five_prime_UTR 45.0%
GCTTGTCCCTGACAGTAAAA+CGG + tig0028560:50250-50269 None:intergenic 45.0%
!!! TTAATTTATTTTTACAAAAT+CGG - tig0028560:43925-43944 Msa1438490:intron 5.0%
! GCCTTTTCTCCTTCGTCACA+AGG - tig0028560:40236-40255 Msa1438490:CDS 50.0%
GGTTCGTTACCTTGTGACGA+AGG + tig0028560:40248-40267 None:intergenic 50.0%
CACTTAGCATGCGAGAGGTA+CGG - tig0028560:40876-40895 Msa1438490:intron 50.0%
! ACTTAGCATGCGAGAGGTAC+GGG - tig0028560:40877-40896 Msa1438490:intron 50.0%
!! TCATTGGCCATGTCGACTCT+GGG - tig0028560:41172-41191 Msa1438490:intron 50.0%
TCTGGGAAATCAACCACCAC+TGG - tig0028560:41189-41208 Msa1438490:intron 50.0%
GTAGATCAAGTGACCAGTGG+TGG + tig0028560:41205-41224 None:intergenic 50.0%
TTGACAAGCGTGTCATCGAG+AGG - tig0028560:41238-41257 Msa1438490:intron 50.0%
GTTCAGCCTTGAGCTTGTCA+AGG + tig0028560:41317-41336 None:intergenic 50.0%
CTCAAGGCTGAACGTGAAAG+AGG - tig0028560:41324-41343 Msa1438490:intron 50.0%
AATGAAATCCCTGTGTCCGG+GGG + tig0028560:41415-41434 None:intergenic 50.0%
GAGAACGGCACAATCAGCTT+GGG + tig0028560:41460-41479 None:intergenic 50.0%
TGAGAACGGCACAATCAGCT+TGG + tig0028560:41461-41480 None:intergenic 50.0%
GGCTTCAAAACCACCAGTAG+TGG + tig0028560:41493-41512 None:intergenic 50.0%
! AGCAAGGAGAGCATGTTCAC+GGG + tig0028560:41538-41557 None:intergenic 50.0%
GCTCTCCTTGCTTTCACTCT+TGG - tig0028560:41546-41565 Msa1438490:CDS 50.0%
AGCGCTCTACAAACCTTGAC+TGG - tig0028560:41873-41892 Msa1438490:intron 50.0%
TTGGACCCTTGTACCAGTCA+AGG + tig0028560:41889-41908 None:intergenic 50.0%
CAAGGGTCCAACTCTTCTTG+AGG - tig0028560:41898-41917 Msa1438490:intron 50.0%
TCAAGGGCCTCAAGAAGAGT+TGG + tig0028560:41908-41927 None:intergenic 50.0%
ATCCTGTAGTGGTAGTCGGA+GGG + tig0028560:41966-41985 None:intergenic 50.0%
AGGAATTGGAACTGTGCCTG+TGG - tig0028560:42000-42019 Msa1438490:intron 50.0%
GGAATTGGAACTGTGCCTGT+GGG - tig0028560:42001-42020 Msa1438490:intron 50.0%
GAATTGGAACTGTGCCTGTG+GGG - tig0028560:42002-42021 Msa1438490:intron 50.0%
!!! GTTGTCACTTTTGCCCCTAC+TGG - tig0028560:42058-42077 Msa1438490:intron 50.0%
GCATCATGAAGCTCTCACAG+AGG - tig0028560:42111-42130 Msa1438490:intron 50.0%
TCCCACATTGTCACCAGGAA+GGG + tig0028560:42137-42156 None:intergenic 50.0%
ATCCCACATTGTCACCAGGA+AGG + tig0028560:42138-42157 None:intergenic 50.0%
GCTGTTAAGGATCTCAAGCG+TGG - tig0028560:42175-42194 Msa1438490:intron 50.0%
TGGGTCATCCTTGGAGTTTG+AGG + tig0028560:42209-42228 None:intergenic 50.0%
AGTTGGCAGATTCCTTGGCT+GGG + tig0028560:42228-42247 None:intergenic 50.0%
AAGTTGGCAGATTCCTTGGC+TGG + tig0028560:42229-42248 None:intergenic 50.0%
ATGAATCACCCTGGCCAGAT+TGG - tig0028560:42268-42287 Msa1438490:intron 50.0%
AGCCATTTCCAATCTGGCCA+GGG + tig0028560:42279-42298 None:intergenic 50.0%
TAGCCATTTCCAATCTGGCC+AGG + tig0028560:42280-42299 None:intergenic 50.0%
ATGCGTCAAACTGTGGCTGT+TGG - tig0028560:42514-42533 Msa1438490:intron 50.0%
TGCGTCAAACTGTGGCTGTT+GGG - tig0028560:42515-42534 Msa1438490:intron 50.0%
CATCAAGGCTGTGGAGAAGA+AGG - tig0028560:42540-42559 Msa1438490:intron 50.0%
GTCTGCTTAAGTCCTCCACT+GGG + tig0028560:42568-42587 None:intergenic 50.0%
GAAGAAGAAGTGAACCGAGC+AGG - tig0028560:42600-42619 Msa1438490:intron 50.0%
GAAACAGAGTCAGCAAGTCC+TGG + tig0028560:42797-42816 None:intergenic 50.0%
! TGCTGGGGCATGGTTCTATA+TGG - tig0028560:42871-42890 Msa1438490:intron 50.0%
CCTAGGCCACAAAGTCATCT+TGG + tig0028560:43013-43032 None:intergenic 50.0%
CCAAGATGACTTTGTGGCCT+AGG - tig0028560:43010-43029 Msa1438490:intron 50.0%
GTAGCATATCCGCAAGACCT+TGG - tig0028560:43035-43054 Msa1438490:intron 50.0%
GTCCACCCAACAAGTACGAA+TGG + tig0028560:44059-44078 None:intergenic 50.0%
TACTAGGAGGTTGCTGCACA+AGG - tig0028560:44327-44346 Msa1438490:intron 50.0%
GGAGGAGTAAGGTTGAATGG+TGG + tig0028560:44939-44958 None:intergenic 50.0%
GAAGGAACTCTTGTTGCTCG+CGG + tig0028560:45053-45072 None:intergenic 50.0%
CTTGGCACCAGGTTAATGGA+TGG + tig0028560:45097-45116 None:intergenic 50.0%
! CATCCATTAACCTGGTGCCA+AGG - tig0028560:45095-45114 Msa1438490:intron 50.0%
TTAGGAGATACCTTGGCACC+AGG + tig0028560:45108-45127 None:intergenic 50.0%
! TATGGTGGGAACGGCACAAA+AGG - tig0028560:45263-45282 Msa1438490:intron 50.0%
TTCAGACTCGGCTGAAGGTA+TGG + tig0028560:45650-45669 None:intergenic 50.0%
AGCCGAGTCTGAATCTGGTA+CGG - tig0028560:45657-45676 Msa1438490:intron 50.0%
!! GTTTGTGGTGGGCCAGAAAT+AGG + tig0028560:45894-45913 None:intergenic 50.0%
AGGGACCCAACATAAAAGCG+TGG - tig0028560:46054-46073 Msa1438490:intron 50.0%
CGAGGAGACCAAACTTTGTC+GGG - tig0028560:46387-46406 Msa1438490:intron 50.0%
CATTGCAGCCCGACAAAGTT+TGG + tig0028560:46398-46417 None:intergenic 50.0%
CAAACTTTGTCGGGCTGCAA+TGG - tig0028560:46396-46415 Msa1438490:intron 50.0%
ATGCCCTGCCATGTAAAGCT+AGG - tig0028560:46615-46634 Msa1438490:intron 50.0%
TGAGTCGGTCGGATCTTTCA+AGG - tig0028560:47232-47251 Msa1438490:intron 50.0%
!! AAGGAAGCGTCCAACTCGAT+TGG - tig0028560:47251-47270 Msa1438490:intron 50.0%
! TTGGACGCTTCTAGCTGAGT+CGG - tig0028560:47345-47364 Msa1438490:intron 50.0%
AGAGACACAAAGAGGGTGGA+CGG + tig0028560:47394-47413 None:intergenic 50.0%
CAGCCACAGAGACACAAAGA+GGG + tig0028560:47401-47420 None:intergenic 50.0%
TCAGCCACAGAGACACAAAG+AGG + tig0028560:47402-47421 None:intergenic 50.0%
! ATCTGGGTTGAAGGATCAGC+TGG + tig0028560:47443-47462 None:intergenic 50.0%
TTCCGAACCAACTCAGAGTG+TGG - tig0028560:47805-47824 Msa1438490:five_prime_UTR 50.0%
!! GTCCACACTCTGAGTTGGTT+CGG + tig0028560:47810-47829 None:intergenic 50.0%
! TGTTGCCTTTCTGAGAGACG+TGG - tig0028560:48225-48244 Msa1438490:five_prime_UTR 50.0%
AAAGGCCACGTCTCTCAGAA+AGG + tig0028560:48233-48252 None:intergenic 50.0%
!! TCATTGGCGATGTCGACTCT+GGG - tig0028560:48670-48689 Msa1438490:five_prime_UTR 50.0%
TCTGGGAAGTCAACTACCAC+CGG - tig0028560:48687-48706 Msa1438490:intron 50.0%
TTTGTAGATCAGGTGACCGG+TGG + tig0028560:48706-48725 None:intergenic 50.0%
CTTGAGCTTGTCAAGGATCC+AGG + tig0028560:48808-48827 None:intergenic 50.0%
CTGGATCCTTGACAAGCTCA+AGG - tig0028560:48806-48825 Msa1438490:intron 50.0%
GTTCAGCCTTGAGCTTGTCA+AGG + tig0028560:41317-41336 None:intergenic 50.0%
CTCAAGGCTGAACGTGAAAG+AGG - tig0028560:41324-41343 Msa1438490:intron 50.0%
TGCACTGTCATTGATGTCCC+TGG - tig0028560:48894-48913 Msa1438490:five_prime_UTR 50.0%
! GGAGAACTTGTTCCATGGTC+TGG + tig0028560:49031-49050 None:intergenic 50.0%
TCACGCCAAGAGTGAAAGCA+AGG + tig0028560:49052-49071 None:intergenic 50.0%
GGATGCCATTCAGTACTCCA+AGG - tig0028560:49457-49476 Msa1438490:intron 50.0%
!! CCTACCCTTGGAGTACTGAA+TGG + tig0028560:49465-49484 None:intergenic 50.0%
CCATTCAGTACTCCAAGGGT+AGG - tig0028560:49462-49481 Msa1438490:intron 50.0%
AGCGCTCTACAAACCTTGAC+TGG - tig0028560:41873-41892 Msa1438490:intron 50.0%
TTGGACCCTTGTACCAGTCA+AGG + tig0028560:41889-41908 None:intergenic 50.0%
AAGGGTCCAAACCCTTCTTG+AGG - tig0028560:49620-49639 Msa1438490:intron 50.0%
TTGGTCAAGGGCCTCAAGAA+GGG + tig0028560:41912-41931 None:intergenic 50.0%
TTTGGTCAAGGGCCTCAAGA+AGG + tig0028560:41913-41932 None:intergenic 50.0%
! GCCTCTTAGGCTCGTTGATT+TGG + tig0028560:49653-49672 None:intergenic 50.0%
!! ATTCTGAAGCGGTAGTCGGA+GGG + tig0028560:49688-49707 None:intergenic 50.0%
GAGACTGGTGTCTTGAAACC+TGG - tig0028560:49753-49772 Msa1438490:intron 50.0%
!! GAGGTGACTTTTTCCCCTAC+TGG - tig0028560:49780-49799 Msa1438490:intron 50.0%
GACAGCTAAAGTCACGTCTG+TGG - tig0028560:49806-49825 Msa1438490:intron 50.0%
TGGGTCATCCTTGGAGTTAG+AGG + tig0028560:49961-49980 None:intergenic 50.0%
TGTAAAGTTAGCGGCCTCCT+TGG + tig0028560:49985-50004 None:intergenic 50.0%
ACACTTGACAGCAATGTGGG+AGG + tig0028560:50078-50097 None:intergenic 50.0%
ACAGTAAAACGGCCAAGTGG+AGG + tig0028560:50239-50258 None:intergenic 50.0%
CTGACAGTAAAACGGCCAAG+TGG + tig0028560:50242-50261 None:intergenic 50.0%
!! CACTTGGCCGTTTTACTGTC+AGG - tig0028560:50240-50259 Msa1438490:five_prime_UTR 50.0%
AAGCGTCAAACTGTGGCTGT+TGG - tig0028560:50266-50285 Msa1438490:five_prime_UTR 50.0%
!! TGTGGCTGTTGGTGTCATCA+CGG - tig0028560:50277-50296 Msa1438490:five_prime_UTR 50.0%
CGCATCACTTAGCATGCGAG+AGG - tig0028560:40871-40890 Msa1438490:intron 55.0%
! CTTAGCATGCGAGAGGTACG+GGG - tig0028560:40878-40897 Msa1438490:intron 55.0%
!! GTCATTGGCCATGTCGACTC+TGG - tig0028560:41171-41190 Msa1438490:intron 55.0%
CTTGAGCTTGTCAAGGACCC+AGG + tig0028560:41310-41329 None:intergenic 55.0%
CTGGGTCCTTGACAAGCTCA+AGG - tig0028560:41308-41327 Msa1438490:intron 55.0%
TGCACTGTCATTGATGCCCC+CGG - tig0028560:41396-41415 Msa1438490:CDS 55.0%
GGCTTGTCTGAAGGCCTCTT+AGG + tig0028560:41944-41963 None:intergenic 55.0%
TCCTGTAGTGGTAGTCGGAG+GGG + tig0028560:41965-41984 None:intergenic 55.0%
CATCCTGTAGTGGTAGTCGG+AGG + tig0028560:41967-41986 None:intergenic 55.0%
GCCCTTCCTGGTGACAATGT+GGG - tig0028560:42133-42152 Msa1438490:intron 55.0%
TTCCTTGGCTGGGTCATCCT+TGG + tig0028560:42218-42237 None:intergenic 55.0%
CACCCTGGCCAGATTGGAAA+TGG - tig0028560:42274-42293 Msa1438490:intron 55.0%
GAGGTGTGGCAGTCAAGAAC+AGG + tig0028560:42307-42326 None:intergenic 55.0%
TGACAGCAATGTGGGAGGTG+TGG + tig0028560:42321-42340 None:intergenic 55.0%
GATGATTCCCACCAAGCCCA+TGG - tig0028560:42438-42457 Msa1438490:intron 55.0%
! TCAACCACCATGGGCTTGGT+GGG + tig0028560:42448-42467 None:intergenic 55.0%
AGTCTCAACCACCATGGGCT+TGG + tig0028560:42452-42471 None:intergenic 55.0%
CTAACAGCAAAACGGCCGAG+TGG + tig0028560:42490-42509 None:intergenic 55.0%
GCGTCAAACTGTGGCTGTTG+GGG - tig0028560:42516-42535 Msa1438490:intron 55.0%
TGTGGCTGTTGGGGTCATCA+AGG - tig0028560:42525-42544 Msa1438490:intron 55.0%
TGTTGGGGTCATCAAGGCTG+TGG - tig0028560:42531-42550 Msa1438490:intron 55.0%
GTGGAGAAGAAGGATCCCAG+TGG - tig0028560:42550-42569 Msa1438490:intron 55.0%
GAGAAGAAGGATCCCAGTGG+AGG - tig0028560:42553-42572 Msa1438490:intron 55.0%
GGTCTGCTTAAGTCCTCCAC+TGG + tig0028560:42569-42588 None:intergenic 55.0%
!! ACTGGGTTCTAGATCGACGG+TGG - tig0028560:42689-42708 Msa1438490:intron 55.0%
! GAAGGTATGGCTATGCGCCT+TGG + tig0028560:45637-45656 None:intergenic 55.0%
CCAGATTCAGACTCGGCTGA+AGG + tig0028560:45655-45674 None:intergenic 55.0%
CCTTCAGCCGAGTCTGAATC+TGG - tig0028560:45652-45671 Msa1438490:intron 55.0%
GGCCGTACCAGATTCAGACT+CGG + tig0028560:45662-45681 None:intergenic 55.0%
ACGTCGTCGTATGGGTGAAC+TGG - tig0028560:47198-47217 Msa1438490:intron 55.0%
! CTTCTAGCTGAGTCGGTCGA+TGG - tig0028560:47352-47371 Msa1438490:intron 55.0%
CCACAGAGACACAAAGAGGG+TGG + tig0028560:47398-47417 None:intergenic 55.0%
CCACCCTCTTTGTGTCTCTG+TGG - tig0028560:47395-47414 Msa1438490:intron 55.0%
!! GTCATTGGCGATGTCGACTC+TGG - tig0028560:48669-48688 Msa1438490:five_prime_UTR 55.0%
GAAGCTAGCATGTCCAGGGA+TGG - tig0028560:49005-49024 Msa1438490:five_prime_UTR 55.0%
CAAGGGCCTCAAGAAGGGTT+TGG + tig0028560:49629-49648 None:intergenic 55.0%
GGCTTGTCTGAAGGCCTCTT+AGG + tig0028560:41944-41963 None:intergenic 55.0%
!! TTCTGAAGCGGTAGTCGGAG+GGG + tig0028560:49687-49706 None:intergenic 55.0%
!! CATTCTGAAGCGGTAGTCGG+AGG + tig0028560:49689-49708 None:intergenic 55.0%
! GTGAACAAGGCGTCCACCAT+AGG + tig0028560:49846-49865 None:intergenic 55.0%
ATCTCACATAGTCGCCGGGA+AGG + tig0028560:49890-49909 None:intergenic 55.0%
GTCGTCGTCATGAATCACCC+TGG - tig0028560:50011-50030 Msa1438490:intron 55.0%
GAGGTGTGGCAGTGAAGAAC+AGG + tig0028560:50059-50078 None:intergenic 55.0%
TGACAGCAATGTGGGAGGTG+TGG + tig0028560:42321-42340 None:intergenic 55.0%
GATGATTCCCACCATGCCGA+TGG - tig0028560:50190-50209 Msa1438490:five_prime_UTR 55.0%
TCAACCACCATCGGCATGGT+GGG + tig0028560:50200-50219 None:intergenic 55.0%
AGTCTCAACCACCATCGGCA+TGG + tig0028560:50204-50223 None:intergenic 55.0%
CAGGGACAAGCGTCAAACTG+TGG - tig0028560:50259-50278 Msa1438490:five_prime_UTR 55.0%
!! TGTTGGTGTCATCACGGCTG+TGG - tig0028560:50283-50302 Msa1438490:five_prime_UTR 55.0%
CATCACGGCTGTGGAGAAGA+AGG - tig0028560:50292-50311 Msa1438490:five_prime_UTR 55.0%
GTGGAGAAGAAGGATCCCAG+TGG - tig0028560:42550-42569 Msa1438490:intron 55.0%
GAGAAGAAGGATCCCAGTGG+AGG - tig0028560:42553-42572 Msa1438490:intron 55.0%
TCATTGATGCCCCCGGACAC+AGG - tig0028560:41403-41422 Msa1438490:CDS 60.0%
CATTGATGCCCCCGGACACA+GGG - tig0028560:41404-41423 Msa1438490:CDS 60.0%
AGTCGGAGGGGCTTGTCTGA+AGG + tig0028560:41953-41972 None:intergenic 60.0%
GGCCCTTCCTGGTGACAATG+TGG - tig0028560:42132-42151 Msa1438490:intron 60.0%
CTCCAAGGATGACCCAGCCA+AGG - tig0028560:42213-42232 Msa1438490:intron 60.0%
GATTCCCACCAAGCCCATGG+TGG - tig0028560:42441-42460 Msa1438490:intron 60.0%
CTCAACCACCATGGGCTTGG+TGG + tig0028560:42449-42468 None:intergenic 60.0%
ACAGCAAAACGGCCGAGTGG+AGG + tig0028560:42487-42506 None:intergenic 60.0%
TGCTAGGAGGCTGCTGCACA+AGG + tig0028560:46130-46149 None:intergenic 60.0%
CTGAGTCGGTCGATGGTCGT+CGG - tig0028560:47359-47378 Msa1438490:intron 60.0%
TTCCATGGTCTGGCCATCCC+TGG + tig0028560:49021-49040 None:intergenic 60.0%
AGTCGGAGGGGCTTGTCTGA+AGG + tig0028560:41953-41972 None:intergenic 60.0%
CCAGTCTCAACACGTCCCAC+AGG + tig0028560:49741-49760 None:intergenic 60.0%
CCTGTGGGACGTGTTGAGAC+TGG - tig0028560:49738-49757 Msa1438490:intron 60.0%
CTCCAAGGATGACCCAGCCA+AGG - tig0028560:42213-42232 Msa1438490:intron 60.0%
CTCCTTGGCTGGGTCATCCT+TGG + tig0028560:49970-49989 None:intergenic 60.0%
CAAGGATGACCCAGCCAAGG+AGG - tig0028560:42216-42235 Msa1438490:intron 60.0%
AGTTAGCGGCCTCCTTGGCT+GGG + tig0028560:49980-49999 None:intergenic 60.0%
AAGTTAGCGGCCTCCTTGGC+TGG + tig0028560:49981-50000 None:intergenic 60.0%
GATTCCCACCATGCCGATGG+TGG - tig0028560:50193-50212 Msa1438490:five_prime_UTR 60.0%
CTCAACCACCATCGGCATGG+TGG + tig0028560:50201-50220 None:intergenic 60.0%
GCCCCTCCGACTACCACTAC+AGG - tig0028560:41961-41980 Msa1438490:intron 65.0%
GCTCTCACAGAGGCCCTTCC+TGG - tig0028560:42121-42140 Msa1438490:intron 65.0%
GTCCAGGGATGGCCAGACCA+TGG - tig0028560:49016-49035 Msa1438490:five_prime_UTR 65.0%
! CCTCCGACGGAGTACCTTCC+CGG - tig0028560:49873-49892 Msa1438490:intron 65.0%
!! TCGCCGGGAAGGTACTCCGT+CGG + tig0028560:49879-49898 None:intergenic 65.0%
CCAGTCTCGACACGCCCCAC+AGG + tig0028560:42019-42038 None:intergenic 70.0%
CCTGTGGGGCGTGTCGAGAC+TGG - tig0028560:42016-42035 Msa1438490:intron 70.0%
!! CCGGGAAGGTACTCCGTCGG+AGG + tig0028560:49876-49895 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0028560 gene 40091 50334 40091 ID=Msa1438490;Name=Msa1438490
tig0028560 mRNA 40091 50334 40091 ID=Msa1438490-mRNA-1;Parent=Msa1438490;Name=Msa1438490-mRNA-1;_AED=0.07;_eAED=0.07;_QI=1556|0.4|0.5|1|0.2|0.16|6|0|396
tig0028560 exon 40091 40783 40091 ID=Msa1438490-mRNA-1:exon:11275;Parent=Msa1438490-mRNA-1
tig0028560 exon 41358 41581 41358 ID=Msa1438490-mRNA-1:exon:11274;Parent=Msa1438490-mRNA-1
tig0028560 exon 41591 41807 41591 ID=Msa1438490-mRNA-1:exon:11273;Parent=Msa1438490-mRNA-1
tig0028560 exon 47746 48697 47746 ID=Msa1438490-mRNA-1:exon:11272;Parent=Msa1438490-mRNA-1
tig0028560 exon 48826 49319 48826 ID=Msa1438490-mRNA-1:exon:11271;Parent=Msa1438490-mRNA-1
tig0028560 exon 50168 50334 50168 ID=Msa1438490-mRNA-1:exon:11270;Parent=Msa1438490-mRNA-1
tig0028560 five_prime_UTR 50168 50334 50168 ID=Msa1438490-mRNA-1:five_prime_utr;Parent=Msa1438490-mRNA-1
tig0028560 five_prime_UTR 48826 49319 48826 ID=Msa1438490-mRNA-1:five_prime_utr;Parent=Msa1438490-mRNA-1
tig0028560 five_prime_UTR 47803 48697 47803 ID=Msa1438490-mRNA-1:five_prime_utr;Parent=Msa1438490-mRNA-1
tig0028560 CDS 47746 47802 47746 ID=Msa1438490-mRNA-1:cds;Parent=Msa1438490-mRNA-1
tig0028560 CDS 41591 41807 41591 ID=Msa1438490-mRNA-1:cds;Parent=Msa1438490-mRNA-1
tig0028560 CDS 41358 41581 41358 ID=Msa1438490-mRNA-1:cds;Parent=Msa1438490-mRNA-1
tig0028560 CDS 40091 40783 40091 ID=Msa1438490-mRNA-1:cds;Parent=Msa1438490-mRNA-1
Gene Sequence

>Msa1438490

ATGATCTATTCACTTGGGAAGCATATGTCAAGTCTGCACCTTCATCTCATAGCTTTTATCTTTTTGTGTTTTCAAGGACAAATGGGTAAGGAAAAGATTAACATTGTTGTCATTGGCGATGTCGACTCTGGGAAGTCAACTACCACCGGTCACCTGATCTACAAACTTGGAGGTGTTGACAAGAGTGTCATTGAGAAATTTGAGAAAGAAGCTGCTGAAATGGGCAAGACTTCAGTCAAGTATGCCTGGATCCTTGACAAGCTCAAGGCTGAACGTATGACCATTGACATTTCTTACTCGAAGTTTGAGACAACAAAGAACTGCTGCACTGTCATTGATGTCCCTGGACACAAAAATTTCATTAAGAACATGATCACTGGGACGTCTGAAGCTGATTGTGCTCTTCTTATCCTTGATTCCTGTATTGGTGCTTTTGAAGCTAGCATGTCCAGGGATGGCCAGACCATGGAACAAGTTCTCCTTGCTTTCACTCTTGGCGCCCTTGACCAAATCAACGAGCCTAAGAGGCCTTCAGACAAGCCCCTCCGACTACCGCTTCAGAATGTCTACAAGTTTGGAGGAATTGGAACTGTACCTGTGGGACGTGTTGAGACTGGTGTCTTGAAACCTGGAATGGAGGTGACTTTTTCCCCTACTGGACTGACAGCTAAAGTCACGTCTGTGGAGATGCACGATAAACCTATGGTGGACGCCTTGTTCACAGAAAAACCTCCGACGGAGTACCTTCCCGGCGACTATGTGAGATTTAATGTTGAGAACGTTGATGTTAAGGATCTCAAGAGTGGCTATGTTGCCTCTAACTCCAAGGATGACCCAGCCAAGGAGGCCGCTAACTTTACATCTCAAGTCGTCGTCATGAATCACCCTGGCAAGATTGAAAATGGCTATGCACCTGTTCTTCACTGCCACACCTCCCACATTGCTGTCAAGTGTGATGAGCTTGTTACCAAGATTGATAGGCGTTCTGGTAGGGTGACTGAGACGAAGCCCAAATTCCTGATGAATGGTGATGCTGGTATTATTAAGATGATTCCCACCATGCCGATGGTGGTTGAGACTTTCTCTGAATATCCTCCACTTGGCCGTTTTACTGTCAGGGACAAGCGTCAAACTGTGGCTGTTGGTGTCATCACGGCTGTGGAGAAGAAGGATCCCAGTGGAGGACTTTAG
Protein sequence

>Msa1438490

MIYSLGKHMSSLHLHLIAFIFLCFQGQMGKEKINIVVIGDVDSGKSTTTGHLIYKLGGVDKSVIEKFEKEAAEMGKTSVKYAWILDKLKAERMTIDISYSKFETTKNCCTVIDVPGHKNFIKNMITGTSEADCALLILDSCIGAFEASMSRDGQTMEQVLLAFTLGALDQINEPKRPSDKPLRLPLQNVYKFGGIGTVPVGRVETGVLKPGMEVTFSPTGLTAKVTSVEMHDKPMVDALFTEKPPTEYLPGDYVRFNVENVDVKDLKSGYVASNSKDDPAKEAANFTSQVVVMNHPGKIENGYAPVLHCHTSHIAVKCDELVTKIDRRSGRVTETKPKFLMNGDAGIIKMIPTMPMVVETFSEYPPLGRFTVRDKRQTVAVGVITAVEKKDPSGGL*