AlfalfaGEDB | Msa1438800

M. sativa cultivar zhongmu-4 / Msa1438800

KEGG: K01507
GO: GO:0000139 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005794 GO:0005802 GO:0006810 GO:0008150 GO:0009678 GO:0012505 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0022804 GO:0022857 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0097708 GO:0098588 GO:0098791
PFAM: PF03030.19

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1438800	XP_013454481.1	92.433	859	5	2	1	859	1	799	0.0	1558

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1438800	sp\|Q9FWR2\|AVPX_ARATH	80.488	861	106	3	1	859	2	802	0.0	1393

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1438800	A0A072UFQ2	92.433	859	5	2	1	859	1	799	0.0	1558

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0226310	Msa1438800	0.800091	1.695336e-48	-8.615850e-47
Msa0304570	Msa1438800	0.831874	1.303438e-55	-8.615850e-47
Msa0304680	Msa1438800	0.815318	9.829098e-52	-8.615850e-47
Msa0573010	Msa1438800	0.804977	1.667206e-49	-8.615850e-47
Msa0586450	Msa1438800	0.808236	3.419409e-50	-8.615850e-47
Msa0625460	Msa1438800	0.984276	4.319051e-160	-8.615850e-47
Msa0626270	Msa1438800	0.800220	1.596350e-48	-8.615850e-47
Msa0626460	Msa1438800	0.806530	7.867202e-50	-8.615850e-47
Msa0664540	Msa1438800	0.825830	3.785138e-54	-8.615850e-47
Msa0702720	Msa1438800	0.829099	6.220291e-55	-8.615850e-47

Showing 1 to 10 of 12 entries

Previous1 2Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1438800	MtrunA17_Chr4g0000211	92.433	859	5	2	1	859	1	799	0.0	1558
Msa1438800	MtrunA17_Chr4g0064741	36.802	788	369	16	95	858	73	755	9.13e-139	430

Showing 1 to 2 of 2 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1438800	AT1G16780.1	80.488	861	106	3	1	859	2	802	0.0	1393
Msa1438800	AT1G16780.3	80.488	861	106	3	1	859	2	802	0.0	1393
Msa1438800	AT1G16780.2	80.488	861	106	3	1	859	2	802	0.0	1393
Msa1438800	AT1G78920.1	80.836	861	103	3	1	859	2	802	0.0	1383
Msa1438800	AT1G78920.2	80.836	861	103	3	1	859	2	802	0.0	1383
Msa1438800	AT1G78920.3	80.836	861	103	3	1	859	2	802	0.0	1383
Msa1438800	AT1G15690.1	36.421	788	372	17	95	858	77	759	1.67e-137	427
Msa1438800	AT1G15690.2	33.634	666	325	16	84	725	60	632	8.27e-92	303

Showing 1 to 8 of 8 entries

Previous1Next

Find 259 sgRNAs with CRISPR-Local

Find 496 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATAGCTCCAAAGCCG+AGG	0.633559	tig0028625:+43033	None:intergenic
AAAATTCAGCGACCGGGTTC+AGG	0.355060	tig0028625:-43364	Msa1438800:five_prime_UTR
AAACAGGAAACCCAACTGGC+GGG	0.567211	tig0028625:-39530	Msa1438800:CDS
AAACATAAAATGTGGCATAA+AGG	0.395610	tig0028625:+42264	None:intergenic
AAAGCAATAAAGAGACAATA+TGG	0.358957	tig0028625:+40307	None:intergenic
AAATCCTTTGGTGGTGGCTT+TGG	0.352874	tig0028625:+39251	None:intergenic
AAATCTCAAATATAACAGTA+TGG	0.439945	tig0028625:+39361	None:intergenic
AAATTCAGCGACCGGGTTCA+GGG	0.476599	tig0028625:-43363	Msa1438800:five_prime_UTR
AACAACTCTCACAGGAAGAT+GGG	0.526459	tig0028625:+37351	None:intergenic
AACAGTGTCTGGTATTCTTA+TGG	0.322376	tig0028625:-37841	Msa1438800:CDS

Showing 1 to 10 of 259 entries

Previous1 2 3 4 5…26Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AGTAGTTCGAAAAAAAGAGA+AGG	-	tig0028625:37099-37118	Msa1438800:three_prime_UTR	30.0%
TTCAACTCATACAATCATGA+TGG	-	tig0028625:37502-37521	Msa1438800:intron	30.0%
TAAGATGATAATACCTACCA+GGG	+	tig0028625:37606-37625	None:intergenic	30.0%
AGATGGGAAATTCAAAAATG+GGG	+	tig0028625:37647-37666	None:intergenic	30.0%
GAAGATGGGAAATTCAAAAA+TGG	+	tig0028625:37649-37668	None:intergenic	30.0%
CAGATATTTCGTATTCTACT+CGG	-	tig0028625:37691-37710	Msa1438800:intron	30.0%
GTGATGACAAAGACAATAAT+TGG	+	tig0028625:37793-37812	None:intergenic	30.0%
TATTAACCTGAACCATTTCA+GGG	+	tig0028625:37885-37904	None:intergenic	30.0%
GAAAGTAATATGATAAGGTC+AGG	+	tig0028625:37955-37974	None:intergenic	30.0%
TCTCTCATACATTCTATTTC+AGG	-	tig0028625:38192-38211	Msa1438800:intron	30.0%

Showing 1 to 10 of 496 entries

Previous1 2 3 4 5…50Next

Chromosome	Type	Strat	End	Strand	Name
tig0028625	gene	37060	43742	37060	ID=Msa1438800;Name=Msa1438800
tig0028625	mRNA	37060	43742	37060	ID=Msa1438800-mRNA-1;Parent=Msa1438800;Name=Msa1438800-mRNA-1;_AED=0.05;_eAED=0.05;_QI=314\|1\|0.84\|1\|0.91\|0.76\|13\|299\|859
tig0028625	exon	37060	37458	37060	ID=Msa1438800-mRNA-1:exon:11420;Parent=Msa1438800-mRNA-1
tig0028625	exon	37726	37945	37726	ID=Msa1438800-mRNA-1:exon:11419;Parent=Msa1438800-mRNA-1
tig0028625	exon	38696	38807	38696	ID=Msa1438800-mRNA-1:exon:11418;Parent=Msa1438800-mRNA-1
tig0028625	exon	38902	39057	38902	ID=Msa1438800-mRNA-1:exon:11417;Parent=Msa1438800-mRNA-1
tig0028625	exon	39161	39847	39161	ID=Msa1438800-mRNA-1:exon:11416;Parent=Msa1438800-mRNA-1
tig0028625	exon	40063	40467	40063	ID=Msa1438800-mRNA-1:exon:11415;Parent=Msa1438800-mRNA-1
tig0028625	exon	41587	41759	41587	ID=Msa1438800-mRNA-1:exon:11414;Parent=Msa1438800-mRNA-1
tig0028625	exon	42222	42354	42222	ID=Msa1438800-mRNA-1:exon:11413;Parent=Msa1438800-mRNA-1
tig0028625	exon	42441	42588	42441	ID=Msa1438800-mRNA-1:exon:11412;Parent=Msa1438800-mRNA-1
tig0028625	exon	42673	42824	42673	ID=Msa1438800-mRNA-1:exon:11411;Parent=Msa1438800-mRNA-1
tig0028625	exon	42905	43108	42905	ID=Msa1438800-mRNA-1:exon:11410;Parent=Msa1438800-mRNA-1
tig0028625	exon	43195	43445	43195	ID=Msa1438800-mRNA-1:exon:11409;Parent=Msa1438800-mRNA-1
tig0028625	exon	43590	43742	43590	ID=Msa1438800-mRNA-1:exon:11408;Parent=Msa1438800-mRNA-1
tig0028625	five_prime_UTR	43590	43742	43590	ID=Msa1438800-mRNA-1:five_prime_utr;Parent=Msa1438800-mRNA-1
tig0028625	five_prime_UTR	43285	43445	43285	ID=Msa1438800-mRNA-1:five_prime_utr;Parent=Msa1438800-mRNA-1
tig0028625	CDS	43195	43284	43195	ID=Msa1438800-mRNA-1:cds;Parent=Msa1438800-mRNA-1
tig0028625	CDS	42905	43108	42905	ID=Msa1438800-mRNA-1:cds;Parent=Msa1438800-mRNA-1
tig0028625	CDS	42673	42824	42673	ID=Msa1438800-mRNA-1:cds;Parent=Msa1438800-mRNA-1
tig0028625	CDS	42441	42588	42441	ID=Msa1438800-mRNA-1:cds;Parent=Msa1438800-mRNA-1
tig0028625	CDS	42222	42354	42222	ID=Msa1438800-mRNA-1:cds;Parent=Msa1438800-mRNA-1
tig0028625	CDS	41587	41759	41587	ID=Msa1438800-mRNA-1:cds;Parent=Msa1438800-mRNA-1
tig0028625	CDS	40063	40467	40063	ID=Msa1438800-mRNA-1:cds;Parent=Msa1438800-mRNA-1
tig0028625	CDS	39161	39847	39161	ID=Msa1438800-mRNA-1:cds;Parent=Msa1438800-mRNA-1
tig0028625	CDS	38902	39057	38902	ID=Msa1438800-mRNA-1:cds;Parent=Msa1438800-mRNA-1
tig0028625	CDS	38696	38807	38696	ID=Msa1438800-mRNA-1:cds;Parent=Msa1438800-mRNA-1
tig0028625	CDS	37726	37945	37726	ID=Msa1438800-mRNA-1:cds;Parent=Msa1438800-mRNA-1
tig0028625	CDS	37359	37458	37359	ID=Msa1438800-mRNA-1:cds;Parent=Msa1438800-mRNA-1
tig0028625	three_prime_UTR	37060	37358	37060	ID=Msa1438800-mRNA-1:three_prime_utr;Parent=Msa1438800-mRNA-1

Gene Sequence

>Msa1438800

ATGATGGATGAAGATATCATGGAGACCGGCACTTACCATGATAGGCCAAGAACTTTCCCTAACATGCGTTCTAAACCTTACACCCCCCTGATATTTCGTATTCTACTCGGTATAAATGTTCGTGTCCTCTTCATTCTTTTACTCCTCGGCTTTGGAGCTATCTTTTACATGGGTGCAAGTACTTCTCCAATTATTGTCTTTGTCATCACCATTTGTATTCTCAGCTTCCTTGTCGCCATATATCTTATGAAGTGGGTGCTCGCTAAAGATGAGGGTCCCCCTGAAATGGTTCAGATAGCTGATGCCATACGAGATGGAGCTGAAGGATTTATCCGGACACAGTATGGAACTATATCCAAGATGGCTATGTTGCTTGCTCTTGTCATTCTTTTCATATATTTGTTTCGCAGCCCAACTCCTCAACAGGAAGCTTCTGGCATGGGAAGGACAACATCTGCATGCATCACTGTAGCTTCTTTCCTTTTAGGTGCCCTTTGTTCAGGTTTTGCTGGATATGTAGGGATGTGGGTGTCAGTTCGTGCCAACGTCAGAGTCTCTAGTGCTGCGAGACGGTCTTCAAGAGAGGCATTGCAGATAGCTACTCGAGCAGGTGGTTTATCAGCTCTTATCGTTGTTGGTATGGCTGTAATCGGTATAGCAGTCCTTTATGCCACATTTTATGTTTGGCTGGGAGTGGGCACACCTGGTTCAATGAAGGTCACTGATTTGCCTCTTCTCCTAGTTGGATATGGATTTGGTGCCTCCTTTGTTGCACTGTTTGCTCAGTTGGGTGGTGGAATATATACTAAAGCAGCTGATGTTGGGGCAGACCTTGTTGGAAAAGTAGAACAGGGAATACCTGAAGATGACCCTAGAAATCCTGCTGTTATTGCTGACCTGGTTGGAGACAATGTGGGAGATTGTGCTGCTAGAGGTGCTGATCTTTTTGAAAGCATTGCAGCTGAAATAATCAGTGCCATGATACTAGGGGGAACAATGGCACAACGCTGTAAAATCGAAGGCAAGTACCCAGTTACTCCATATTGTCTCTTTATTGCTTTGTTTTGGTTTTCACTGAGTTGTATGCATAATTTGATGTTTTTTTCTTCTGATTCAGATCCATCTGGCTTCATCTTGTTTCCTCTTGTTGTTCACTCATTTGATCTGGTAGTTTCATCTGTGGGAATATTTTCTATTCGGGGTACACGTGAATCTGGACTAATGACTCCTATGGAAGATCCTATGGCAATTCTTCAGAAAGGATATTCTGTTACAATAGTTTTAGCTGTTCTGGCATTTGGTCTGTCTACCCGGTGGTTACTTTATGTTGAGCAAGCACCTTCAGCATGGTTCAATTTTGCTTTGTGCGGGTTGATTGGTATTATCACAGCGTACATTTTTGTCTGGATCACCAAGTATTATACTGACTACAAGCATGAGCCTGTGCGCACATTAGCTCTTTCTAGCTCTACTGGCCATGGCACTAACATAATTGCTGGGGTTAGTTTGGGGCTGGAATCTACTGGTCTTCCGGTCCTTGTCATCAGTGTGGCGATTGTCTCGGCCTACTGGCTGGGACAGACTGCTGGACTAATAGATGAAACAGGAAACCCAACTGGCGGGCTGTTTGGCACAGCTGTAGCAACAATGGGAATGCTTAGCACCGCTGCTTATATTCTTACCATGGATATGTTTGGCCCGATAGCTGATAATGCTGGAGGAATTGTAGAAATGAGTCAGCAGGTAGTTCTGGCCAGAACAAATATTTTCCATACTGTTATATTTGAGATTTCTCATGGTACGTATACTGACATTACCTATTATCAGCCTGAAAGTGTCCGAGAGATCACTGATGTCCTTGATGCCGTGGGTAACACAACCAAAGCCACCACCAAAGGATTTGCCATTGGTTCTGCTGCGCTTGCCTCTTTCCTTCTGTTTAGTGCTTACATGGATGAGGTTTCTTCATTTTCTCGCGAACCTTTTAAACAGGTTGATATTGCCATTCCAGAAGTTTTCGTTGGTGGGTTGCTGGGTGCCATGCTTATATTTGTCTTTAGTGCTTGGGCTTGTGCCGCTGTTGGCCGAACTGCACAGGAGGTTGTTAATGAAGTAAGAAGGCAGTTCATTGAGAGGCCTGGTATAATGGATTACAAGGAGAAACCGGATTATGCTCGCTGTGTTGCAATTGTAGCATCTGCATCATTAAGAGAGATGATAAAACCTGGTGCTTTGGCAATCATTTCACCTATTGTAGTTGGTTTTGTATTCCGAATTTTGGGCTACTATACAGGGCAACCCTTACTCGGGGCTAAAGTTGTGGCTGCTTTGCTGATGTTTGCAACAGTGTCTGGTATTCTTATGGCACTTTTTCTGAACACAGCTGGTGGTGCCTGGGATAATGCAAAGAAGTACATAGAGACCGGAGCTCTTGGAGGCAAGGGAAGTGATGCTCACAAAGCAGCAATAACAGGAGACACAGTGGGAGACCCATTCAAAGACACTGCTGGTCCTTCACTTCATGTACTTATAAAGATGCTCTCAACGATTACATTGGTAATGGCTCCCATCTTCCTGTGA

Protein sequence

>Msa1438800

MMDEDIMETGTYHDRPRTFPNMRSKPYTPLIFRILLGINVRVLFILLLLGFGAIFYMGASTSPIIVFVITICILSFLVAIYLMKWVLAKDEGPPEMVQIADAIRDGAEGFIRTQYGTISKMAMLLALVILFIYLFRSPTPQQEASGMGRTTSACITVASFLLGALCSGFAGYVGMWVSVRANVRVSSAARRSSREALQIATRAGGLSALIVVGMAVIGIAVLYATFYVWLGVGTPGSMKVTDLPLLLVGYGFGASFVALFAQLGGGIYTKAADVGADLVGKVEQGIPEDDPRNPAVIADLVGDNVGDCAARGADLFESIAAEIISAMILGGTMAQRCKIEGKYPVTPYCLFIALFWFSLSCMHNLMFFSSDSDPSGFILFPLVVHSFDLVVSSVGIFSIRGTRESGLMTPMEDPMAILQKGYSVTIVLAVLAFGLSTRWLLYVEQAPSAWFNFALCGLIGIITAYIFVWITKYYTDYKHEPVRTLALSSSTGHGTNIIAGVSLGLESTGLPVLVISVAIVSAYWLGQTAGLIDETGNPTGGLFGTAVATMGMLSTAAYILTMDMFGPIADNAGGIVEMSQQVVLARTNIFHTVIFEISHGTYTDITYYQPESVREITDVLDAVGNTTKATTKGFAIGSAALASFLLFSAYMDEVSSFSREPFKQVDIAIPEVFVGGLLGAMLIFVFSAWACAAVGRTAQEVVNEVRRQFIERPGIMDYKEKPDYARCVAIVASASLREMIKPGALAIISPIVVGFVFRILGYYTGQPLLGAKVVAALLMFATVSGILMALFLNTAGGAWDNAKKYIETGALGGKGSDAHKAAITGDTVGDPFKDTAGPSLHVLIKMLSTITLVMAPIFL*