AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0655710


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0655710 MtrunA17_Chr8g0375551 98.496 133 0 1 1 133 34 164 6.92e-94 268
Msa0655710 MtrunA17_Chr5g0410051 36.842 76 47 1 14 89 50 124 7.58e-14 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0655710 AT1G31940.1 46.939 49 26 0 18 66 53 101 3.22e-12 60.5
Msa0655710 AT2G35585.1 41.818 55 31 1 14 67 48 102 4.84e-11 57.4

Find 68 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGGAAAATAGTGATATTC+TGG 0.208224 4_3:-64577551 None:intergenic
CGCTTTCGCACTCCTCGAGC+TGG 0.260475 4_3:-64577444 None:intergenic
CCATTGATCAAAAGGGTAAT+TGG 0.293161 4_3:+64576286 Msa0655710:five_prime_UTR
AAAGGAGAGTGAGCATAAAA+AGG 0.300414 4_3:-64576086 None:intergenic
TTTATAGTTATATATGCTAA+TGG 0.325570 4_3:+64576201 Msa0655710:five_prime_UTR
TTAGATAGACAAATGTTTGT+AGG 0.331683 4_3:+64577850 Msa0655710:three_prime_UTR
TCTTCATGCACCAATGCTTC+CGG 0.370311 4_3:-64577695 None:intergenic
TTTCTTGTCCATTGATCAAA+AGG 0.371603 4_3:+64576278 Msa0655710:five_prime_UTR
GGCTCCATAGGATGTTCAAC+TGG 0.393061 4_3:-64576573 None:intergenic
TTATAGTTATATATGCTAAT+GGG 0.403730 4_3:+64576202 Msa0655710:five_prime_UTR
AGGAAGAGAGGTGAGATGTC+TGG 0.414508 4_3:+64577384 Msa0655710:CDS
GCTTTCGCACTCCTCGAGCT+GGG 0.417036 4_3:-64577443 None:intergenic
TTTCCCAGTTGAACATCCTA+TGG 0.422933 4_3:+64576569 Msa0655710:CDS
TTAGCTCGGTTGGTGAGTTA+AGG 0.434129 4_3:-64577932 None:intergenic
ACACTAATGACTGAAGATTC+AGG 0.437311 4_3:-64576630 None:intergenic
ACCCTCACTCATGGATCATC+AGG 0.442814 4_3:+64577474 Msa0655710:CDS
TTGGAAAATAGTGATATTCT+GGG 0.444826 4_3:-64577550 None:intergenic
TTTCCAAGTGCTTCAGCAGT+TGG 0.454811 4_3:+64577566 Msa0655710:CDS
AGAGGTGAGATGTCTGGGTC+TGG 0.464003 4_3:+64577390 Msa0655710:CDS
TTCACTTAGGAAAGAGAAAG+AGG 0.470639 4_3:-64576119 None:intergenic
AATTGGAGAATTTATTGATA+CGG 0.474812 4_3:+64576303 Msa0655710:five_prime_UTR
AGAGGAACACAGAAAGCATA+AGG 0.478521 4_3:+64577364 Msa0655710:CDS
CAGTCATAGAGTTAGTTAAG+AGG 0.484753 4_3:-64576253 None:intergenic
AACGACATATGATGAAAACT+TGG 0.485073 4_3:-64577721 None:intergenic
GTAAGATTTATGTTTCACTT+AGG 0.493864 4_3:-64576132 None:intergenic
TGTCCAACTGCTGAAGCACT+TGG 0.496596 4_3:-64577569 None:intergenic
TCTTCATCCGGTGGCTCCAT+AGG 0.504589 4_3:-64576585 None:intergenic
GGGTCTGGACAAAGAACAGC+TGG 0.506189 4_3:+64577405 Msa0655710:CDS
AGATGTGGCATTCTCATCAA+TGG 0.507933 4_3:-64577513 None:intergenic
ATATTCTGGGATTGTAGAGG+AGG 0.508528 4_3:-64577537 None:intergenic
CGGCATCACACCCTCACTCA+TGG 0.508751 4_3:+64577465 Msa0655710:CDS
GAAAGAGGAGAAGAAATGAA+AGG 0.518038 4_3:-64576104 None:intergenic
CCTTGCATGGAATGTTGTGA+TGG 0.518542 4_3:-64577620 None:intergenic
AACTTAAAATAGAGCAAGAC+CGG 0.519643 4_3:+64577676 Msa0655710:three_prime_UTR
GTCCACATAGTTAGCTCGGT+TGG 0.520181 4_3:-64577942 None:intergenic
ATGACTGAAGATTCAGGCAT+TGG 0.525006 4_3:-64576624 None:intergenic
TAGAGCAAGACCGGAAGCAT+TGG 0.526276 4_3:+64577685 Msa0655710:three_prime_UTR
GCCACCGGATGAAGATCGTC+CGG 0.527419 4_3:+64576593 Msa0655710:CDS
GGAAGAGAGGTGAGATGTCT+GGG 0.529996 4_3:+64577385 Msa0655710:CDS
AAAATGAATCCCTCCTTGCA+TGG 0.531998 4_3:-64577633 None:intergenic
CAGCTCGAGGAGTGCGAAAG+CGG 0.537056 4_3:+64577445 Msa0655710:CDS
TGGACAAAGAACAGCTGGCA+TGG 0.537925 4_3:+64577410 Msa0655710:CDS
ATGAAAGGATGCATGAAAAG+AGG 0.540753 4_3:+64577346 Msa0655710:CDS
TCAGGCATTGGACATTTCAC+CGG 0.545910 4_3:-64576612 None:intergenic
TATTCTGGGATTGTAGAGGA+GGG 0.548828 4_3:-64577536 None:intergenic
CTTGCATGGAATGTTGTGAT+GGG 0.556419 4_3:-64577619 None:intergenic
TTCACCGGACGATCTTCATC+CGG 0.561909 4_3:-64576597 None:intergenic
TACACAGAACAGTATCATCA+TGG 0.562804 4_3:+64576491 Msa0655710:exon
CTTTCGCACTCCTCGAGCTG+GGG 0.565176 4_3:-64577442 None:intergenic
TGAACATCCTATGGAGCCAC+CGG 0.581194 4_3:+64576578 Msa0655710:CDS
ACAGAAAGCATAAGGAAGAG+AGG 0.581626 4_3:+64577372 Msa0655710:CDS
TTCTTGTCCATTGATCAAAA+GGG 0.584575 4_3:+64576279 Msa0655710:five_prime_UTR
ACGACATATGATGAAAACTT+GGG 0.591479 4_3:-64577720 None:intergenic
CAACCCTCTGATGATGATGA+TGG 0.596745 4_3:-64576530 None:intergenic
CACAACATTCCATGCAAGGA+GGG 0.597092 4_3:+64577624 Msa0655710:three_prime_UTR
ACTGTTCTGTGTAGTTACAC+TGG 0.597328 4_3:-64576481 None:intergenic
TCCTGATGATCCATGAGTGA+GGG 0.599861 4_3:-64577475 None:intergenic
GACACAGATGCCCCAGCTCG+AGG 0.604247 4_3:+64577432 Msa0655710:CDS
CCATCACAACATTCCATGCA+AGG 0.608498 4_3:+64577620 Msa0655710:three_prime_UTR
ACCGGACGATCTTCATCCGG+TGG 0.608873 4_3:-64576594 None:intergenic
GATTGTAGAGGAGGGAGATG+TGG 0.615192 4_3:-64577528 None:intergenic
GTGATATTCTGGGATTGTAG+AGG 0.620846 4_3:-64577540 None:intergenic
ACCACCATCATCATCATCAG+AGG 0.627709 4_3:+64576526 Msa0655710:CDS
GCTCCATAGGATGTTCAACT+GGG 0.634698 4_3:-64576572 None:intergenic
CCACCATCATCATCATCAGA+GGG 0.645144 4_3:+64576527 Msa0655710:CDS
CTCCTGATGATCCATGAGTG+AGG 0.684933 4_3:-64577476 None:intergenic
TCACAACATTCCATGCAAGG+AGG 0.689773 4_3:+64577623 Msa0655710:three_prime_UTR
CCCTCTGATGATGATGATGG+TGG 0.719053 4_3:-64576527 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATACTAATAATAAAACTAAA+AGG + chr4_3:64576897-64576916 Msa0655710:intron 10.0%
!! ATACTAATAATAAAACTAAA+AGG + chr4_3:64576897-64576916 Msa0655710:intron 10.0%
!! TTTATAGTTATATATGCTAA+TGG + chr4_3:64576201-64576220 Msa0655710:five_prime_UTR 15.0%
!! TTATAGTTATATATGCTAAT+GGG + chr4_3:64576202-64576221 Msa0655710:five_prime_UTR 15.0%
!!! CAACTAATTTTGTATATTTT+AGG + chr4_3:64576422-64576441 Msa0655710:intron 15.0%
!! TTTATAGTTATATATGCTAA+TGG + chr4_3:64576201-64576220 Msa0655710:five_prime_UTR 15.0%
!! TTATAGTTATATATGCTAAT+GGG + chr4_3:64576202-64576221 Msa0655710:five_prime_UTR 15.0%
!!! CAACTAATTTTGTATATTTT+AGG + chr4_3:64576422-64576441 Msa0655710:intron 15.0%
!! AATTGGAGAATTTATTGATA+CGG + chr4_3:64576303-64576322 Msa0655710:five_prime_UTR 20.0%
!!! TTGTATATTTTAGGAAGAAA+AGG + chr4_3:64576431-64576450 Msa0655710:intron 20.0%
!! CAAAATGTCTAATGAATATT+TGG - chr4_3:64577016-64577035 None:intergenic 20.0%
!!! CAAATATTCATTAGACATTT+TGG + chr4_3:64577014-64577033 Msa0655710:intron 20.0%
!! AACAATTATTGACAAATGTT+TGG + chr4_3:64577151-64577170 Msa0655710:intron 20.0%
!! ATAAAGGATGAAGATAAAAA+TGG - chr4_3:64577212-64577231 None:intergenic 20.0%
!!! AACAAGTTTTAGTGAAATAA+AGG - chr4_3:64577228-64577247 None:intergenic 20.0%
!!! TTATTTCACTAAAACTTGTT+TGG + chr4_3:64577228-64577247 Msa0655710:intron 20.0%
!!! TGTTGTTATGTTAGATTTTA+AGG + chr4_3:64577875-64577894 Msa0655710:three_prime_UTR 20.0%
!!! AAAATGAATTTTAAGGTCTT+GGG - chr4_3:64577907-64577926 None:intergenic 20.0%
!! AATTGGAGAATTTATTGATA+CGG + chr4_3:64576303-64576322 Msa0655710:five_prime_UTR 20.0%
!!! TTGTATATTTTAGGAAGAAA+AGG + chr4_3:64576431-64576450 Msa0655710:intron 20.0%
!! CAAAATGTCTAATGAATATT+TGG - chr4_3:64577016-64577035 None:intergenic 20.0%
!!! CAAATATTCATTAGACATTT+TGG + chr4_3:64577014-64577033 Msa0655710:intron 20.0%
!! AACAATTATTGACAAATGTT+TGG + chr4_3:64577151-64577170 Msa0655710:intron 20.0%
!! ATAAAGGATGAAGATAAAAA+TGG - chr4_3:64577212-64577231 None:intergenic 20.0%
!!! AACAAGTTTTAGTGAAATAA+AGG - chr4_3:64577228-64577247 None:intergenic 20.0%
!!! TTATTTCACTAAAACTTGTT+TGG + chr4_3:64577228-64577247 Msa0655710:intron 20.0%
!!! TGTTGTTATGTTAGATTTTA+AGG + chr4_3:64577875-64577894 Msa0655710:three_prime_UTR 20.0%
!!! AAAATGAATTTTAAGGTCTT+GGG - chr4_3:64577907-64577926 None:intergenic 20.0%
! GTAAGATTTATGTTTCACTT+AGG - chr4_3:64576135-64576154 None:intergenic 25.0%
! TATTTGGATAGATATATCAC+AGG - chr4_3:64577000-64577019 None:intergenic 25.0%
! AAGGAAATCAATATAGTTCT+AGG - chr4_3:64577110-64577129 None:intergenic 25.0%
!!! TAGAACTATATTGATTTCCT+TGG + chr4_3:64577109-64577128 Msa0655710:intron 25.0%
!! AAAACTTGTTTGGATTCTTT+AGG + chr4_3:64577238-64577257 Msa0655710:intron 25.0%
! TTGGAAAATAGTGATATTCT+GGG - chr4_3:64577553-64577572 None:intergenic 25.0%
! TTAGATAGACAAATGTTTGT+AGG + chr4_3:64577850-64577869 Msa0655710:three_prime_UTR 25.0%
!!! CAAAATGAATTTTAAGGTCT+TGG - chr4_3:64577908-64577927 None:intergenic 25.0%
!! GGAATGCAAAATGAATTTTA+AGG - chr4_3:64577914-64577933 None:intergenic 25.0%
! GTAAGATTTATGTTTCACTT+AGG - chr4_3:64576135-64576154 None:intergenic 25.0%
! TATTTGGATAGATATATCAC+AGG - chr4_3:64577000-64577019 None:intergenic 25.0%
! AAGGAAATCAATATAGTTCT+AGG - chr4_3:64577110-64577129 None:intergenic 25.0%
!!! TAGAACTATATTGATTTCCT+TGG + chr4_3:64577109-64577128 Msa0655710:intron 25.0%
!! AAAACTTGTTTGGATTCTTT+AGG + chr4_3:64577238-64577257 Msa0655710:intron 25.0%
! TTGGAAAATAGTGATATTCT+GGG - chr4_3:64577553-64577572 None:intergenic 25.0%
! TTAGATAGACAAATGTTTGT+AGG + chr4_3:64577850-64577869 Msa0655710:three_prime_UTR 25.0%
!!! CAAAATGAATTTTAAGGTCT+TGG - chr4_3:64577908-64577927 None:intergenic 25.0%
!! GGAATGCAAAATGAATTTTA+AGG - chr4_3:64577914-64577933 None:intergenic 25.0%
AAAAAGGAGTAAGAGAGAAT+GGG - chr4_3:64576073-64576092 None:intergenic 30.0%
TAAAAAGGAGTAAGAGAGAA+TGG - chr4_3:64576074-64576093 None:intergenic 30.0%
TTTCTTGTCCATTGATCAAA+AGG + chr4_3:64576278-64576297 Msa0655710:five_prime_UTR 30.0%
TTCTTGTCCATTGATCAAAA+GGG + chr4_3:64576279-64576298 Msa0655710:five_prime_UTR 30.0%
!! TATTTTAGGAAGAAAAGGAG+AGG + chr4_3:64576436-64576455 Msa0655710:intron 30.0%
!! ATTTTAGGAAGAAAAGGAGA+GGG + chr4_3:64576437-64576456 Msa0655710:intron 30.0%
GTTACCTACTTATCTTAAGA+TGG + chr4_3:64576676-64576695 Msa0655710:intron 30.0%
TTTGCCATCTTAAGATAAGT+AGG - chr4_3:64576683-64576702 None:intergenic 30.0%
ATTATATGAACACGACTACA+AGG - chr4_3:64576806-64576825 None:intergenic 30.0%
! ATAATGTGTCACTAAACACT+AGG + chr4_3:64576824-64576843 Msa0655710:intron 30.0%
ACCAATTTAGAAATTTCAGG+TGG + chr4_3:64576854-64576873 Msa0655710:intron 30.0%
ACCACCTGAAATTTCTAAAT+TGG - chr4_3:64576858-64576877 None:intergenic 30.0%
! GACTAGAATCAGCTTTTAAA+TGG + chr4_3:64576919-64576938 Msa0655710:intron 30.0%
! TTCATTAGACATTTTGGACT+AGG + chr4_3:64577020-64577039 Msa0655710:intron 30.0%
! TCATTAGACATTTTGGACTA+GGG + chr4_3:64577021-64577040 Msa0655710:intron 30.0%
AATGTTTGGCAACAATTTAC+CGG + chr4_3:64577165-64577184 Msa0655710:intron 30.0%
CTTGGAAAATAGTGATATTC+TGG - chr4_3:64577554-64577573 None:intergenic 30.0%
AACTTAAAATAGAGCAAGAC+CGG + chr4_3:64577676-64577695 Msa0655710:three_prime_UTR 30.0%
ACGACATATGATGAAAACTT+GGG - chr4_3:64577723-64577742 None:intergenic 30.0%
AACGACATATGATGAAAACT+TGG - chr4_3:64577724-64577743 None:intergenic 30.0%
AAAAAGGAGTAAGAGAGAAT+GGG - chr4_3:64576073-64576092 None:intergenic 30.0%
TAAAAAGGAGTAAGAGAGAA+TGG - chr4_3:64576074-64576093 None:intergenic 30.0%
TTTCTTGTCCATTGATCAAA+AGG + chr4_3:64576278-64576297 Msa0655710:five_prime_UTR 30.0%
TTCTTGTCCATTGATCAAAA+GGG + chr4_3:64576279-64576298 Msa0655710:five_prime_UTR 30.0%
!! TATTTTAGGAAGAAAAGGAG+AGG + chr4_3:64576436-64576455 Msa0655710:intron 30.0%
!! ATTTTAGGAAGAAAAGGAGA+GGG + chr4_3:64576437-64576456 Msa0655710:intron 30.0%
GTTACCTACTTATCTTAAGA+TGG + chr4_3:64576676-64576695 Msa0655710:intron 30.0%
TTTGCCATCTTAAGATAAGT+AGG - chr4_3:64576683-64576702 None:intergenic 30.0%
ATTATATGAACACGACTACA+AGG - chr4_3:64576806-64576825 None:intergenic 30.0%
! ATAATGTGTCACTAAACACT+AGG + chr4_3:64576824-64576843 Msa0655710:intron 30.0%
ACCAATTTAGAAATTTCAGG+TGG + chr4_3:64576854-64576873 Msa0655710:intron 30.0%
ACCACCTGAAATTTCTAAAT+TGG - chr4_3:64576858-64576877 None:intergenic 30.0%
! GACTAGAATCAGCTTTTAAA+TGG + chr4_3:64576919-64576938 Msa0655710:intron 30.0%
! TTCATTAGACATTTTGGACT+AGG + chr4_3:64577020-64577039 Msa0655710:intron 30.0%
! TCATTAGACATTTTGGACTA+GGG + chr4_3:64577021-64577040 Msa0655710:intron 30.0%
AATGTTTGGCAACAATTTAC+CGG + chr4_3:64577165-64577184 Msa0655710:intron 30.0%
CTTGGAAAATAGTGATATTC+TGG - chr4_3:64577554-64577573 None:intergenic 30.0%
AACTTAAAATAGAGCAAGAC+CGG + chr4_3:64577676-64577695 Msa0655710:three_prime_UTR 30.0%
ACGACATATGATGAAAACTT+GGG - chr4_3:64577723-64577742 None:intergenic 30.0%
AACGACATATGATGAAAACT+TGG - chr4_3:64577724-64577743 None:intergenic 30.0%
AAAGGAGAGTGAGCATAAAA+AGG - chr4_3:64576089-64576108 None:intergenic 35.0%
GAAAGAGGAGAAGAAATGAA+AGG - chr4_3:64576107-64576126 None:intergenic 35.0%
TTCACTTAGGAAAGAGAAAG+AGG - chr4_3:64576122-64576141 None:intergenic 35.0%
AAAGAAGCTGAGAAAAATGC+TGG - chr4_3:64576171-64576190 None:intergenic 35.0%
! CATTTTTCTCAGCTTCTTTC+TGG + chr4_3:64576172-64576191 Msa0655710:five_prime_UTR 35.0%
CAGTCATAGAGTTAGTTAAG+AGG - chr4_3:64576256-64576275 None:intergenic 35.0%
! CCAATTACCCTTTTGATCAA+TGG - chr4_3:64576289-64576308 None:intergenic 35.0%
CCATTGATCAAAAGGGTAAT+TGG + chr4_3:64576286-64576305 Msa0655710:five_prime_UTR 35.0%
! AGCTGCTGCTATATATGTTT+TGG - chr4_3:64576371-64576390 None:intergenic 35.0%
TACACAGAACAGTATCATCA+TGG + chr4_3:64576491-64576510 Msa0655710:exon 35.0%
ACACTAATGACTGAAGATTC+AGG - chr4_3:64576633-64576652 None:intergenic 35.0%
GGGACCAATTTAGAAATTTC+AGG + chr4_3:64576851-64576870 Msa0655710:intron 35.0%
!! CATTAGACATTTTGGACTAG+GGG + chr4_3:64577022-64577041 Msa0655710:intron 35.0%
ACATTTAACAACTGCTACCA+AGG - chr4_3:64577129-64577148 None:intergenic 35.0%
! CATGACTTTTACAGGATGAA+AGG + chr4_3:64577331-64577350 Msa0655710:intron 35.0%
ATGAAAGGATGCATGAAAAG+AGG + chr4_3:64577346-64577365 Msa0655710:CDS 35.0%
AAAGGAGAGTGAGCATAAAA+AGG - chr4_3:64576089-64576108 None:intergenic 35.0%
GAAAGAGGAGAAGAAATGAA+AGG - chr4_3:64576107-64576126 None:intergenic 35.0%
TTCACTTAGGAAAGAGAAAG+AGG - chr4_3:64576122-64576141 None:intergenic 35.0%
AAAGAAGCTGAGAAAAATGC+TGG - chr4_3:64576171-64576190 None:intergenic 35.0%
! CATTTTTCTCAGCTTCTTTC+TGG + chr4_3:64576172-64576191 Msa0655710:five_prime_UTR 35.0%
CAGTCATAGAGTTAGTTAAG+AGG - chr4_3:64576256-64576275 None:intergenic 35.0%
! CCAATTACCCTTTTGATCAA+TGG - chr4_3:64576289-64576308 None:intergenic 35.0%
CCATTGATCAAAAGGGTAAT+TGG + chr4_3:64576286-64576305 Msa0655710:five_prime_UTR 35.0%
! AGCTGCTGCTATATATGTTT+TGG - chr4_3:64576371-64576390 None:intergenic 35.0%
TACACAGAACAGTATCATCA+TGG + chr4_3:64576491-64576510 Msa0655710:exon 35.0%
ACACTAATGACTGAAGATTC+AGG - chr4_3:64576633-64576652 None:intergenic 35.0%
GGGACCAATTTAGAAATTTC+AGG + chr4_3:64576851-64576870 Msa0655710:intron 35.0%
!! CATTAGACATTTTGGACTAG+GGG + chr4_3:64577022-64577041 Msa0655710:intron 35.0%
ACATTTAACAACTGCTACCA+AGG - chr4_3:64577129-64577148 None:intergenic 35.0%
! CATGACTTTTACAGGATGAA+AGG + chr4_3:64577331-64577350 Msa0655710:intron 35.0%
ATGAAAGGATGCATGAAAAG+AGG + chr4_3:64577346-64577365 Msa0655710:CDS 35.0%
ACTGTTCTGTGTAGTTACAC+TGG - chr4_3:64576484-64576503 None:intergenic 40.0%
TTTCCCAGTTGAACATCCTA+TGG + chr4_3:64576569-64576588 Msa0655710:CDS 40.0%
ATGACTGAAGATTCAGGCAT+TGG - chr4_3:64576627-64576646 None:intergenic 40.0%
CTAGAAAGAGAAGCTGCAAA+GGG - chr4_3:64577052-64577071 None:intergenic 40.0%
CAACAATTTACCGGTCATTC+TGG + chr4_3:64577174-64577193 Msa0655710:intron 40.0%
TCAGTAGTTTCCAGAATGAC+CGG - chr4_3:64577187-64577206 None:intergenic 40.0%
!! TGCAGTTCATTCTGAAGTTC+AGG + chr4_3:64577287-64577306 Msa0655710:intron 40.0%
!! GCAGTTCATTCTGAAGTTCA+GGG + chr4_3:64577288-64577307 Msa0655710:intron 40.0%
! CTGACAAGCATGACTTTTAC+AGG + chr4_3:64577323-64577342 Msa0655710:intron 40.0%
! AGAGGAACACAGAAAGCATA+AGG + chr4_3:64577364-64577383 Msa0655710:CDS 40.0%
! ACAGAAAGCATAAGGAAGAG+AGG + chr4_3:64577372-64577391 Msa0655710:CDS 40.0%
AGATGTGGCATTCTCATCAA+TGG - chr4_3:64577516-64577535 None:intergenic 40.0%
!! TATTCTGGGATTGTAGAGGA+GGG - chr4_3:64577539-64577558 None:intergenic 40.0%
!! ATATTCTGGGATTGTAGAGG+AGG - chr4_3:64577540-64577559 None:intergenic 40.0%
!! GTGATATTCTGGGATTGTAG+AGG - chr4_3:64577543-64577562 None:intergenic 40.0%
CTTGCATGGAATGTTGTGAT+GGG - chr4_3:64577622-64577641 None:intergenic 40.0%
AAAATGAATCCCTCCTTGCA+TGG - chr4_3:64577636-64577655 None:intergenic 40.0%
ACTGTTCTGTGTAGTTACAC+TGG - chr4_3:64576484-64576503 None:intergenic 40.0%
TTTCCCAGTTGAACATCCTA+TGG + chr4_3:64576569-64576588 Msa0655710:CDS 40.0%
ATGACTGAAGATTCAGGCAT+TGG - chr4_3:64576627-64576646 None:intergenic 40.0%
CTAGAAAGAGAAGCTGCAAA+GGG - chr4_3:64577052-64577071 None:intergenic 40.0%
CAACAATTTACCGGTCATTC+TGG + chr4_3:64577174-64577193 Msa0655710:intron 40.0%
TCAGTAGTTTCCAGAATGAC+CGG - chr4_3:64577187-64577206 None:intergenic 40.0%
!! TGCAGTTCATTCTGAAGTTC+AGG + chr4_3:64577287-64577306 Msa0655710:intron 40.0%
!! GCAGTTCATTCTGAAGTTCA+GGG + chr4_3:64577288-64577307 Msa0655710:intron 40.0%
! CTGACAAGCATGACTTTTAC+AGG + chr4_3:64577323-64577342 Msa0655710:intron 40.0%
! AGAGGAACACAGAAAGCATA+AGG + chr4_3:64577364-64577383 Msa0655710:CDS 40.0%
! ACAGAAAGCATAAGGAAGAG+AGG + chr4_3:64577372-64577391 Msa0655710:CDS 40.0%
AGATGTGGCATTCTCATCAA+TGG - chr4_3:64577516-64577535 None:intergenic 40.0%
!! TATTCTGGGATTGTAGAGGA+GGG - chr4_3:64577539-64577558 None:intergenic 40.0%
!! ATATTCTGGGATTGTAGAGG+AGG - chr4_3:64577540-64577559 None:intergenic 40.0%
!! GTGATATTCTGGGATTGTAG+AGG - chr4_3:64577543-64577562 None:intergenic 40.0%
CTTGCATGGAATGTTGTGAT+GGG - chr4_3:64577622-64577641 None:intergenic 40.0%
AAAATGAATCCCTCCTTGCA+TGG - chr4_3:64577636-64577655 None:intergenic 40.0%
AAAGAGAGAGAGAGAGAGAG+AGG - chr4_3:64576048-64576067 None:intergenic 45.0%
! GCTAATGGGATTTTCATGCG+AGG + chr4_3:64576216-64576235 Msa0655710:five_prime_UTR 45.0%
ACCACCATCATCATCATCAG+AGG + chr4_3:64576526-64576545 Msa0655710:CDS 45.0%
CCACCATCATCATCATCAGA+GGG + chr4_3:64576527-64576546 Msa0655710:CDS 45.0%
! CAACCCTCTGATGATGATGA+TGG - chr4_3:64576533-64576552 None:intergenic 45.0%
GCTCCATAGGATGTTCAACT+GGG - chr4_3:64576575-64576594 None:intergenic 45.0%
!! TCAGGCATTGGACATTTCAC+CGG - chr4_3:64576615-64576634 None:intergenic 45.0%
ATGGCAAAGCATGCTTTGCA+TGG + chr4_3:64576695-64576714 Msa0655710:intron 45.0%
TGTCACTAAACACTAGGCTC+AGG + chr4_3:64576830-64576849 Msa0655710:intron 45.0%
GTCACTAAACACTAGGCTCA+GGG + chr4_3:64576831-64576850 Msa0655710:intron 45.0%
GCTAGAAAGAGAAGCTGCAA+AGG - chr4_3:64577053-64577072 None:intergenic 45.0%
TCCTGATGATCCATGAGTGA+GGG - chr4_3:64577478-64577497 None:intergenic 45.0%
TTTCCAAGTGCTTCAGCAGT+TGG + chr4_3:64577566-64577585 Msa0655710:CDS 45.0%
CCTTGCATGGAATGTTGTGA+TGG - chr4_3:64577623-64577642 None:intergenic 45.0%
CCATCACAACATTCCATGCA+AGG + chr4_3:64577620-64577639 Msa0655710:three_prime_UTR 45.0%
TCACAACATTCCATGCAAGG+AGG + chr4_3:64577623-64577642 Msa0655710:three_prime_UTR 45.0%
CACAACATTCCATGCAAGGA+GGG + chr4_3:64577624-64577643 Msa0655710:three_prime_UTR 45.0%
TCTTCATGCACCAATGCTTC+CGG - chr4_3:64577698-64577717 None:intergenic 45.0%
AAAGAGAGAGAGAGAGAGAG+AGG - chr4_3:64576048-64576067 None:intergenic 45.0%
! GCTAATGGGATTTTCATGCG+AGG + chr4_3:64576216-64576235 Msa0655710:five_prime_UTR 45.0%
ACCACCATCATCATCATCAG+AGG + chr4_3:64576526-64576545 Msa0655710:CDS 45.0%
CCACCATCATCATCATCAGA+GGG + chr4_3:64576527-64576546 Msa0655710:CDS 45.0%
! CAACCCTCTGATGATGATGA+TGG - chr4_3:64576533-64576552 None:intergenic 45.0%
GCTCCATAGGATGTTCAACT+GGG - chr4_3:64576575-64576594 None:intergenic 45.0%
!! TCAGGCATTGGACATTTCAC+CGG - chr4_3:64576615-64576634 None:intergenic 45.0%
ATGGCAAAGCATGCTTTGCA+TGG + chr4_3:64576695-64576714 Msa0655710:intron 45.0%
TGTCACTAAACACTAGGCTC+AGG + chr4_3:64576830-64576849 Msa0655710:intron 45.0%
GTCACTAAACACTAGGCTCA+GGG + chr4_3:64576831-64576850 Msa0655710:intron 45.0%
GCTAGAAAGAGAAGCTGCAA+AGG - chr4_3:64577053-64577072 None:intergenic 45.0%
TCCTGATGATCCATGAGTGA+GGG - chr4_3:64577478-64577497 None:intergenic 45.0%
TTTCCAAGTGCTTCAGCAGT+TGG + chr4_3:64577566-64577585 Msa0655710:CDS 45.0%
CCTTGCATGGAATGTTGTGA+TGG - chr4_3:64577623-64577642 None:intergenic 45.0%
CCATCACAACATTCCATGCA+AGG + chr4_3:64577620-64577639 Msa0655710:three_prime_UTR 45.0%
TCACAACATTCCATGCAAGG+AGG + chr4_3:64577623-64577642 Msa0655710:three_prime_UTR 45.0%
CACAACATTCCATGCAAGGA+GGG + chr4_3:64577624-64577643 Msa0655710:three_prime_UTR 45.0%
TCTTCATGCACCAATGCTTC+CGG - chr4_3:64577698-64577717 None:intergenic 45.0%
!! CCCTCTGATGATGATGATGG+TGG - chr4_3:64576530-64576549 None:intergenic 50.0%
GGCTCCATAGGATGTTCAAC+TGG - chr4_3:64576576-64576595 None:intergenic 50.0%
TGAACATCCTATGGAGCCAC+CGG + chr4_3:64576578-64576597 Msa0655710:CDS 50.0%
TTCACCGGACGATCTTCATC+CGG - chr4_3:64576600-64576619 None:intergenic 50.0%
AGGAAGAGAGGTGAGATGTC+TGG + chr4_3:64577384-64577403 Msa0655710:CDS 50.0%
GGAAGAGAGGTGAGATGTCT+GGG + chr4_3:64577385-64577404 Msa0655710:CDS 50.0%
TGGACAAAGAACAGCTGGCA+TGG + chr4_3:64577410-64577429 Msa0655710:CDS 50.0%
ACCCTCACTCATGGATCATC+AGG + chr4_3:64577474-64577493 Msa0655710:CDS 50.0%
CTCCTGATGATCCATGAGTG+AGG - chr4_3:64577479-64577498 None:intergenic 50.0%
GATTGTAGAGGAGGGAGATG+TGG - chr4_3:64577531-64577550 None:intergenic 50.0%
! TGTCCAACTGCTGAAGCACT+TGG - chr4_3:64577572-64577591 None:intergenic 50.0%
! TAGAGCAAGACCGGAAGCAT+TGG + chr4_3:64577685-64577704 Msa0655710:three_prime_UTR 50.0%
!! CCCTCTGATGATGATGATGG+TGG - chr4_3:64576530-64576549 None:intergenic 50.0%
GGCTCCATAGGATGTTCAAC+TGG - chr4_3:64576576-64576595 None:intergenic 50.0%
TGAACATCCTATGGAGCCAC+CGG + chr4_3:64576578-64576597 Msa0655710:CDS 50.0%
TTCACCGGACGATCTTCATC+CGG - chr4_3:64576600-64576619 None:intergenic 50.0%
AGGAAGAGAGGTGAGATGTC+TGG + chr4_3:64577384-64577403 Msa0655710:CDS 50.0%
GGAAGAGAGGTGAGATGTCT+GGG + chr4_3:64577385-64577404 Msa0655710:CDS 50.0%
TGGACAAAGAACAGCTGGCA+TGG + chr4_3:64577410-64577429 Msa0655710:CDS 50.0%
ACCCTCACTCATGGATCATC+AGG + chr4_3:64577474-64577493 Msa0655710:CDS 50.0%
CTCCTGATGATCCATGAGTG+AGG - chr4_3:64577479-64577498 None:intergenic 50.0%
GATTGTAGAGGAGGGAGATG+TGG - chr4_3:64577531-64577550 None:intergenic 50.0%
! TGTCCAACTGCTGAAGCACT+TGG - chr4_3:64577572-64577591 None:intergenic 50.0%
! TAGAGCAAGACCGGAAGCAT+TGG + chr4_3:64577685-64577704 Msa0655710:three_prime_UTR 50.0%
TCTTCATCCGGTGGCTCCAT+AGG - chr4_3:64576588-64576607 None:intergenic 55.0%
AGAGGTGAGATGTCTGGGTC+TGG + chr4_3:64577390-64577409 Msa0655710:CDS 55.0%
GGGTCTGGACAAAGAACAGC+TGG + chr4_3:64577405-64577424 Msa0655710:CDS 55.0%
TCTTCATCCGGTGGCTCCAT+AGG - chr4_3:64576588-64576607 None:intergenic 55.0%
AGAGGTGAGATGTCTGGGTC+TGG + chr4_3:64577390-64577409 Msa0655710:CDS 55.0%
GGGTCTGGACAAAGAACAGC+TGG + chr4_3:64577405-64577424 Msa0655710:CDS 55.0%
GCCACCGGATGAAGATCGTC+CGG + chr4_3:64576593-64576612 Msa0655710:CDS 60.0%
ACCGGACGATCTTCATCCGG+TGG - chr4_3:64576597-64576616 None:intergenic 60.0%
CTTTCGCACTCCTCGAGCTG+GGG - chr4_3:64577445-64577464 None:intergenic 60.0%
GCTTTCGCACTCCTCGAGCT+GGG - chr4_3:64577446-64577465 None:intergenic 60.0%
! CAGCTCGAGGAGTGCGAAAG+CGG + chr4_3:64577445-64577464 Msa0655710:CDS 60.0%
CGGCATCACACCCTCACTCA+TGG + chr4_3:64577465-64577484 Msa0655710:CDS 60.0%
GCCACCGGATGAAGATCGTC+CGG + chr4_3:64576593-64576612 Msa0655710:CDS 60.0%
ACCGGACGATCTTCATCCGG+TGG - chr4_3:64576597-64576616 None:intergenic 60.0%
CTTTCGCACTCCTCGAGCTG+GGG - chr4_3:64577445-64577464 None:intergenic 60.0%
GCTTTCGCACTCCTCGAGCT+GGG - chr4_3:64577446-64577465 None:intergenic 60.0%
! CAGCTCGAGGAGTGCGAAAG+CGG + chr4_3:64577445-64577464 Msa0655710:CDS 60.0%
CGGCATCACACCCTCACTCA+TGG + chr4_3:64577465-64577484 Msa0655710:CDS 60.0%
GACACAGATGCCCCAGCTCG+AGG + chr4_3:64577432-64577451 Msa0655710:CDS 65.0%
CGCTTTCGCACTCCTCGAGC+TGG - chr4_3:64577447-64577466 None:intergenic 65.0%
GACACAGATGCCCCAGCTCG+AGG + chr4_3:64577432-64577451 Msa0655710:CDS 65.0%
CGCTTTCGCACTCCTCGAGC+TGG - chr4_3:64577447-64577466 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 64576040 64577951 64576040 ID=Msa0655710;Name=Msa0655710
chr4_3 mRNA 64576040 64577951 64576040 ID=Msa0655710-mRNA-1;Parent=Msa0655710;Name=Msa0655710-mRNA-1;_AED=0.16;_eAED=0.16;_QI=351|1|1|1|0.5|0.66|3|346|133
chr4_3 exon 64576040 64576324 64576040 ID=Msa0655710-mRNA-1:exon:18268;Parent=Msa0655710-mRNA-1
chr4_3 exon 64576444 64576650 64576444 ID=Msa0655710-mRNA-1:exon:18269;Parent=Msa0655710-mRNA-1
chr4_3 exon 64577345 64577951 64577345 ID=Msa0655710-mRNA-1:exon:18270;Parent=Msa0655710-mRNA-1
chr4_3 five_prime_UTR 64576040 64576324 64576040 ID=Msa0655710-mRNA-1:five_prime_utr;Parent=Msa0655710-mRNA-1
chr4_3 five_prime_UTR 64576444 64576509 64576444 ID=Msa0655710-mRNA-1:five_prime_utr;Parent=Msa0655710-mRNA-1
chr4_3 CDS 64576510 64576650 64576510 ID=Msa0655710-mRNA-1:cds;Parent=Msa0655710-mRNA-1
chr4_3 CDS 64577345 64577605 64577345 ID=Msa0655710-mRNA-1:cds;Parent=Msa0655710-mRNA-1
chr4_3 three_prime_UTR 64577606 64577951 64577606 ID=Msa0655710-mRNA-1:three_prime_utr;Parent=Msa0655710-mRNA-1
Gene Sequence

>Msa0655710

ATGGAAGTGTATCATCACCACCATCATCATCATCAGAGGGTTGATAACAACACAGATTTTTTCCCAGTTGAACATCCTATGGAGCCACCGGATGAAGATCGTCCGGTGAAATGTCCAATGCCTGAATCTTCAGTCATTAGTGATGAAAGGATGCATGAAAAGAGGAACACAGAAAGCATAAGGAAGAGAGGTGAGATGTCTGGGTCTGGACAAAGAACAGCTGGCATGGACACAGATGCCCCAGCTCGAGGAGTGCGAAAGCGGCATCACACCCTCACTCATGGATCATCAGGAGACATTGTGATGACTCCATTGATGAGAATGCCACATCTCCCTCCTCTACAATCCCAGAATATCACTATTTTCCAAGTGCTTCAGCAGTTGGACAAGTTTGAGTCTTAA

Protein sequence

>Msa0655710

MEVYHHHHHHHQRVDNNTDFFPVEHPMEPPDEDRPVKCPMPESSVISDERMHEKRNTESIRKRGEMSGSGQRTAGMDTDAPARGVRKRHHTLTHGSSGDIVMTPLMRMPHLPPLQSQNITIFQVLQQLDKFES*