Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1446900 | I3RZN1 | 90.580 | 276 | 21 | 2 | 1 | 275 | 1 | 272 | 0.0 | 512 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1446900 | Msa1458510 | 0.814000 | 1.925372e-51 | -8.615850e-47 |
| Msa0760440 | Msa1446900 | 0.824096 | 9.714585e-54 | -8.615850e-47 |
| Msa0840330 | Msa1446900 | 0.818608 | 1.793672e-52 | -8.615850e-47 |
| Msa1235390 | Msa1446900 | 0.800416 | 1.456380e-48 | -8.615850e-47 |
| Msa1238330 | Msa1446900 | 0.808180 | 3.515293e-50 | -8.615850e-47 |
| Msa0466010 | Msa1446900 | 0.811391 | 7.165643e-51 | -8.615850e-47 |
| Msa0982780 | Msa1446900 | 0.816713 | 4.798884e-52 | -8.615850e-47 |
| Msa1009110 | Msa1446900 | 0.990430 | 1.352943e-182 | -8.615850e-47 |
| Msa1050400 | Msa1446900 | 0.848322 | 6.597813e-60 | -8.615850e-47 |
| Msa1138550 | Msa1446900 | 0.898647 | 4.323872e-77 | -8.615850e-47 |
| Msa0490380 | Msa1446900 | 0.811168 | 8.010368e-51 | -8.615850e-47 |
| Msa0936530 | Msa1446900 | 0.836550 | 8.761373e-57 | -8.615850e-47 |
| Msa0936550 | Msa1446900 | 0.822206 | 2.681369e-53 | -8.615850e-47 |
| Msa0973520 | Msa1446900 | 0.819076 | 1.404107e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1446900 | MtrunA17_Chr7g0219531 | 78.339 | 277 | 46 | 5 | 1 | 275 | 1 | 265 | 5.10e-154 | 430 |
| Msa1446900 | MtrunA17_Chr7g0219541 | 74.820 | 278 | 60 | 4 | 1 | 275 | 1 | 271 | 2.02e-148 | 416 |
| Msa1446900 | MtrunA17_Chr7g0219521 | 88.636 | 220 | 20 | 2 | 1 | 219 | 1 | 216 | 5.50e-141 | 395 |
| Msa1446900 | MtrunA17_Chr7g0219551 | 60.000 | 260 | 96 | 2 | 10 | 268 | 52 | 304 | 4.48e-113 | 328 |
| Msa1446900 | MtrunA17_Chr2g0308461 | 50.885 | 226 | 101 | 2 | 46 | 268 | 281 | 499 | 8.71e-75 | 237 |
| Msa1446900 | MtrunA17_Chr7g0265701 | 40.244 | 246 | 137 | 4 | 24 | 268 | 15 | 251 | 1.96e-58 | 187 |
| Msa1446900 | MtrunA17_Chr7g0265691 | 42.035 | 226 | 121 | 4 | 46 | 269 | 42 | 259 | 2.08e-58 | 187 |
| Msa1446900 | MtrunA17_Chr7g0265581 | 39.674 | 184 | 104 | 3 | 85 | 266 | 31 | 209 | 9.07e-46 | 153 |
| Msa1446900 | MtrunA17_Chr7g0219511 | 96.491 | 57 | 2 | 0 | 219 | 275 | 14 | 70 | 7.57e-35 | 120 |
| Msa1446900 | MtrunA17_Chr7g0255231 | 44.262 | 122 | 59 | 4 | 85 | 204 | 112 | 226 | 5.94e-26 | 102 |
| Msa1446900 | MtrunA17_Chr7g0265681 | 48.980 | 49 | 25 | 0 | 88 | 136 | 25 | 73 | 2.98e-12 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1446900 | AT3G29760.5 | 53.266 | 199 | 86 | 1 | 67 | 265 | 325 | 516 | 4.82e-78 | 246 |
| Msa1446900 | AT3G29760.3 | 53.266 | 199 | 86 | 1 | 67 | 265 | 325 | 516 | 4.82e-78 | 246 |
| Msa1446900 | AT3G29760.2 | 47.111 | 225 | 86 | 2 | 67 | 265 | 325 | 542 | 5.03e-72 | 231 |
| Msa1446900 | AT4G26190.2 | 47.945 | 219 | 106 | 2 | 47 | 265 | 843 | 1053 | 1.40e-63 | 215 |
| Msa1446900 | AT4G26190.5 | 47.945 | 219 | 106 | 2 | 47 | 265 | 843 | 1053 | 1.40e-63 | 215 |
| Msa1446900 | AT4G26190.3 | 47.945 | 219 | 106 | 2 | 47 | 265 | 843 | 1053 | 1.40e-63 | 215 |
| Msa1446900 | AT4G26190.1 | 47.945 | 219 | 106 | 2 | 47 | 265 | 843 | 1053 | 1.40e-63 | 215 |
| Msa1446900 | AT4G26190.4 | 47.945 | 219 | 106 | 2 | 47 | 265 | 843 | 1053 | 1.40e-63 | 215 |
| Msa1446900 | AT3G29760.1 | 52.817 | 142 | 58 | 2 | 67 | 208 | 325 | 457 | 5.14e-48 | 166 |
| Msa1446900 | AT2G36540.1 | 39.706 | 204 | 97 | 6 | 66 | 269 | 72 | 249 | 4.11e-40 | 140 |
| Msa1446900 | AT2G36550.1 | 37.671 | 146 | 79 | 3 | 124 | 269 | 8 | 141 | 9.28e-27 | 102 |
| Msa1446900 | AT3G29760.4 | 48.571 | 70 | 29 | 1 | 67 | 136 | 325 | 387 | 2.93e-16 | 78.6 |
Find 52 sgRNAs with CRISPR-Local
Find 287 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTATTATTCTTGATTTAAA+TGG | 0.148881 | tig0031536:-25541 | Msa1446900:CDS |
| GATATAAACATTACTCAAAA+AGG | 0.177621 | tig0031536:+20795 | None:intergenic |
| TTAAGGATTTAAGGAAAATT+TGG | 0.214094 | tig0031536:-21857 | Msa1446900:CDS |
| GGTCTCCTGAATAATGAAAA+AGG | 0.309208 | tig0031536:+25011 | None:intergenic |
| TAAGGATTTAAGGAAAATTT+GGG | 0.311259 | tig0031536:-21856 | Msa1446900:CDS |
| GCATCTGGTGTGACCTCCTT+TGG | 0.321436 | tig0031536:+25490 | None:intergenic |
| TTCAGAAATTCATGAGAAAA+AGG | 0.337712 | tig0031536:+24990 | None:intergenic |
| CACTGAAACAAATGAATCTT+GGG | 0.372355 | tig0031536:-20895 | Msa1446900:CDS |
| TTGCCAGTCCTTCTAGATAT+TGG | 0.381824 | tig0031536:+20973 | None:intergenic |
| TCACTGAAACAAATGAATCT+TGG | 0.393898 | tig0031536:-20896 | Msa1446900:CDS |
| CCCTTCTCCCAAGGAAGATT+AGG | 0.399945 | tig0031536:+21822 | None:intergenic |
| CTTACATGATCTCCTGCCTA+TGG | 0.409797 | tig0031536:+25465 | None:intergenic |
| CAGTATCATTGATTATTTGA+TGG | 0.411423 | tig0031536:-24809 | Msa1446900:CDS |
| ACTGGCAAGTGCTGAAAATA+TGG | 0.413196 | tig0031536:-20958 | Msa1446900:CDS |
| CTCCTGCCTATGGTTGCATC+TGG | 0.436291 | tig0031536:+25475 | None:intergenic |
| TCATCAAAAGAAATACCAAT+TGG | 0.440823 | tig0031536:-25580 | Msa1446900:CDS |
| AGTATGATCCTAATCTTCCT+TGG | 0.454156 | tig0031536:-21830 | Msa1446900:CDS |
| GTGATCCGTTCTTGACCAAA+TGG | 0.457924 | tig0031536:+20915 | None:intergenic |
| TTCTTCCTCAAACATCCAAT+TGG | 0.463837 | tig0031536:+25565 | None:intergenic |
| AGTATCATTGATTATTTGAT+GGG | 0.464535 | tig0031536:-24808 | Msa1446900:CDS |
| AAATACCAATTGGATGTTTG+AGG | 0.466266 | tig0031536:-25570 | Msa1446900:CDS |
| AGGATTAAGCAGTGCCTTGT+GGG | 0.466605 | tig0031536:+21758 | None:intergenic |
| TTCTCATAACTGAATGTATG+AGG | 0.469336 | tig0031536:+21620 | None:intergenic |
| GATCTACGCCAATATCTAGA+AGG | 0.480220 | tig0031536:-20981 | Msa1446900:CDS |
| TATGTAGAGCAACATCCATT+TGG | 0.482270 | tig0031536:-20930 | Msa1446900:CDS |
| CCTAATCTTCCTTGGGAGAA+GGG | 0.497837 | tig0031536:-21822 | Msa1446900:CDS |
| AAAAGAAAGAAAATGGTTGT+TGG | 0.501345 | tig0031536:-25697 | None:intergenic |
| GTATGATCCTAATCTTCCTT+GGG | 0.504972 | tig0031536:-21829 | Msa1446900:CDS |
| ACTACACAGTTGTTCAACTT+AGG | 0.508269 | tig0031536:+20672 | None:intergenic |
| AATGGTTGTTGGTGTAGTAA+AGG | 0.525142 | tig0031536:-25686 | Msa1446900:CDS |
| TATTGTTTCTTCACATCCAA+AGG | 0.529429 | tig0031536:-25506 | Msa1446900:CDS |
| ACAAGGGCTTAAGAAATTTG+CGG | 0.531610 | tig0031536:-20756 | Msa1446900:three_prime_UTR |
| TCCTAATCTTCCTTGGGAGA+AGG | 0.534225 | tig0031536:-21823 | Msa1446900:CDS |
| GTGTTAGCGCAGTATAAGAT+TGG | 0.536173 | tig0031536:-20651 | Msa1446900:three_prime_UTR |
| CACCAGATGCAACCATAGGC+AGG | 0.543471 | tig0031536:-25477 | Msa1446900:CDS |
| AAACACTATTTATAACATTG+AGG | 0.554361 | tig0031536:+20865 | None:intergenic |
| TGAGTCAAACACTTTGCTGT+TGG | 0.555205 | tig0031536:-21790 | Msa1446900:CDS |
| TTGCTTTGAGAGATTTGAAG+TGG | 0.560768 | tig0031536:-24964 | Msa1446900:CDS |
| AATCAGAGTGACAATTCTCT+AGG | 0.564562 | tig0031536:-21599 | Msa1446900:intron |
| CAGGATTAAGCAGTGCCTTG+TGG | 0.568364 | tig0031536:+21757 | None:intergenic |
| AACATCCATTTGGTCAAGAA+CGG | 0.582203 | tig0031536:-20920 | Msa1446900:CDS |
| TTGTAATATCCCTTCTCCCA+AGG | 0.590247 | tig0031536:+21813 | None:intergenic |
| ACGCCAATATCTAGAAGGAC+TGG | 0.596511 | tig0031536:-20976 | Msa1446900:CDS |
| TGAGGAAAGATTGAGTTGAA+TGG | 0.599638 | tig0031536:+21638 | None:intergenic |
| ATATTGGCGTAGATCGCCTC+CGG | 0.616561 | tig0031536:+20989 | None:intergenic |
| TGTTTCTTCACATCCAAAGG+AGG | 0.627350 | tig0031536:-25503 | Msa1446900:CDS |
| CAACCTGAAAAGTGAAAACA+TGG | 0.631911 | tig0031536:-20834 | Msa1446900:exon |
| TGGCTGTGTGGTCTTCACGT+TGG | 0.645442 | tig0031536:-24944 | Msa1446900:CDS |
| GTTGGATGATTCTCCCCACA+AGG | 0.654823 | tig0031536:-21772 | Msa1446900:CDS |
| AGAGATTTGAAGTGGCTGTG+TGG | 0.661167 | tig0031536:-24956 | Msa1446900:CDS |
| GGATTAAGCAGTGCCTTGTG+GGG | 0.670885 | tig0031536:+21759 | None:intergenic |
| GTCACACCAGATGCAACCAT+AGG | 0.682655 | tig0031536:-25481 | Msa1446900:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATAAAATTTAATATT+TGG | - | tig0031536:23374-23393 | Msa1446900:intron | 0.0% |
| !!! | AATTTTCTTTAAATTATTGT+CGG | + | tig0031536:21072-21091 | None:intergenic | 10.0% |
| !! | ATATTTGCATATTAAAAAAA+TGG | + | tig0031536:22652-22671 | None:intergenic | 10.0% |
| !! | TTAACACAATAAATAAAAAA+TGG | + | tig0031536:24342-24361 | None:intergenic | 10.0% |
| !! | CTTATTATTCTTGATTTAAA+TGG | - | tig0031536:20784-20803 | Msa1446900:three_prime_UTR | 15.0% |
| !!! | TTTTTTGTTGACTTTTTTAA+TGG | - | tig0031536:20906-20925 | Msa1446900:CDS | 15.0% |
| !!! | ATTAAGCATTATTTTTGTTT+TGG | + | tig0031536:21870-21889 | None:intergenic | 15.0% |
| !!! | ATTTATGTTTAAGTATTTTG+TGG | + | tig0031536:21944-21963 | None:intergenic | 15.0% |
| !! | AATAAACTTATAACAAACAT+TGG | + | tig0031536:24042-24061 | None:intergenic | 15.0% |
| !!! | AGTTTATTAAATTTTATTCC+TGG | - | tig0031536:24054-24073 | Msa1446900:intron | 15.0% |
| !!! | GTTTATTAAATTTTATTCCT+GGG | - | tig0031536:24055-24074 | Msa1446900:intron | 15.0% |
| !! | AAAAATATTCTCATAGAAAA+TGG | - | tig0031536:24099-24118 | Msa1446900:intron | 15.0% |
| !! | TAATTTATTCTCATATTCAT+GGG | + | tig0031536:24139-24158 | None:intergenic | 15.0% |
| !! | TTATTTATTGTGTTAAACAT+TGG | - | tig0031536:24346-24365 | Msa1446900:intron | 15.0% |
| !! | ATAAATGAAGAAAAATACAA+AGG | + | tig0031536:24611-24630 | None:intergenic | 15.0% |
| !! | ATATAAACATTACTCAAAAA+GGG | + | tig0031536:25532-25551 | None:intergenic | 15.0% |
| !! | AAAAATATAACCACAATTGT+TGG | - | tig0031536:21132-21151 | Msa1446900:intron | 20.0% |
| !! | TAAGAAAATGCATTAATTCA+TGG | + | tig0031536:21264-21283 | None:intergenic | 20.0% |
| !!! | ACTCGTGTTTTATAATTTTT+AGG | - | tig0031536:21482-21501 | Msa1446900:intron | 20.0% |
| !!! | CTCGTGTTTTATAATTTTTA+GGG | - | tig0031536:21483-21502 | Msa1446900:intron | 20.0% |
| !!! | AGTATCATTGATTATTTGAT+GGG | - | tig0031536:21517-21536 | Msa1446900:intron | 20.0% |
| !!! | TAGTAGGATTTTGTTTATTT+TGG | - | tig0031536:22174-22193 | Msa1446900:intron | 20.0% |
| !!! | TTTTTGAAATTTTTCCGTAT+CGG | + | tig0031536:22559-22578 | None:intergenic | 20.0% |
| !!! | AAACCCTAATTTTTTAGAAA+GGG | - | tig0031536:23150-23169 | Msa1446900:intron | 20.0% |
| !! | ACATTTCATTTATCTTTCTT+TGG | + | tig0031536:23220-23239 | None:intergenic | 20.0% |
| !! | AAGACATATCTCAATATTAT+CGG | - | tig0031536:23822-23841 | Msa1446900:intron | 20.0% |
| !! | AAAATCTGATAATCAACATA+CGG | - | tig0031536:23930-23949 | Msa1446900:intron | 20.0% |
| !!! | TGAGAATATTTTTTTTTCCT+AGG | + | tig0031536:24092-24111 | None:intergenic | 20.0% |
| !! | CTAATTTATTCTCATATTCA+TGG | + | tig0031536:24140-24159 | None:intergenic | 20.0% |
| !! | ATTATAATAGGAAGGTTAAT+GGG | + | tig0031536:24173-24192 | None:intergenic | 20.0% |
| !! | TATTATAATAGGAAGGTTAA+TGG | + | tig0031536:24174-24193 | None:intergenic | 20.0% |
| !! | ATTCCTGAAACTATTATAAT+AGG | + | tig0031536:24185-24204 | None:intergenic | 20.0% |
| !! | CTTAAATCCTTAAAAACTAT+TGG | + | tig0031536:24461-24480 | None:intergenic | 20.0% |
| !!! | CAATAGTTTTTAAGGATTTA+AGG | - | tig0031536:24459-24478 | Msa1446900:intron | 20.0% |
| !! | TTAAGGATTTAAGGAAAATT+TGG | - | tig0031536:24468-24487 | Msa1446900:intron | 20.0% |
| !! | TAAGGATTTAAGGAAAATTT+GGG | - | tig0031536:24469-24488 | Msa1446900:intron | 20.0% |
| !! | TTCTTATATGTAAAGTCATA+AGG | - | tig0031536:24766-24785 | Msa1446900:intron | 20.0% |
| !!! | ATTACTAACTTGTTAACATT+TGG | + | tig0031536:25229-25248 | None:intergenic | 20.0% |
| !! | AAACACTATTTATAACATTG+AGG | + | tig0031536:25463-25482 | None:intergenic | 20.0% |
| !! | TATAAACATTACTCAAAAAG+GGG | + | tig0031536:25531-25550 | None:intergenic | 20.0% |
| !! | GATATAAACATTACTCAAAA+AGG | + | tig0031536:25533-25552 | None:intergenic | 20.0% |
| !!! | GAGTAATGTTTATATCTTTT+TGG | - | tig0031536:25537-25556 | Msa1446900:CDS | 20.0% |
| ! | TCATCAAAAGAAATACCAAT+TGG | - | tig0031536:20745-20764 | Msa1446900:three_prime_UTR | 25.0% |
| ! | AAAACGCTTAACTAAATGAT+TGG | + | tig0031536:21005-21024 | None:intergenic | 25.0% |
| !! | TAAATTATTGTCGGTATTGA+TGG | + | tig0031536:21063-21082 | None:intergenic | 25.0% |
| !! | AATCAGTAATCACAAGTTTT+TGG | - | tig0031536:21106-21125 | Msa1446900:intron | 25.0% |
| !! | ATCAGTAATCACAAGTTTTT+GGG | - | tig0031536:21107-21126 | Msa1446900:intron | 25.0% |
| !!! | ACACCTTTAATTTGAAATGT+TGG | - | tig0031536:21175-21194 | Msa1446900:intron | 25.0% |
| ! | ATGGATTCAAATCATATACA+CGG | + | tig0031536:21245-21264 | None:intergenic | 25.0% |
| !!! | TTTATTTTTCAGTGTTCAAG+AGG | - | tig0031536:21291-21310 | Msa1446900:intron | 25.0% |
| ! | TTCAGAAATTCATGAGAAAA+AGG | + | tig0031536:21338-21357 | None:intergenic | 25.0% |
| !! | CAGTATCATTGATTATTTGA+TGG | - | tig0031536:21516-21535 | Msa1446900:intron | 25.0% |
| !!! | AACAAATGTTGATTTTCACT+TGG | - | tig0031536:21548-21567 | Msa1446900:intron | 25.0% |
| !!! | ACAAATGTTGATTTTCACTT+GGG | - | tig0031536:21549-21568 | Msa1446900:intron | 25.0% |
| !! | TCAAAATTGGGATTTTTCTT+CGG | - | tig0031536:21706-21725 | Msa1446900:intron | 25.0% |
| ! | AAAATGACAATCAAAATCGA+AGG | - | tig0031536:21760-21779 | Msa1446900:CDS | 25.0% |
| !! | TATGTTTAAGTATTTTGTGG+AGG | + | tig0031536:21941-21960 | None:intergenic | 25.0% |
| !!! | TACATGATTTTGAAAGATTC+TGG | + | tig0031536:22110-22129 | None:intergenic | 25.0% |
| ! | TCAAAAATCAAGATACGATA+CGG | - | tig0031536:22572-22591 | Msa1446900:intron | 25.0% |
| ! | ATTAACAAACACAAAAAACC+AGG | - | tig0031536:22672-22691 | Msa1446900:intron | 25.0% |
| ! | AATTCTACACTATATCCAAA+AGG | - | tig0031536:22805-22824 | Msa1446900:intron | 25.0% |
| !! | GATTTGTATATCTTGATGAT+GGG | + | tig0031536:22932-22951 | None:intergenic | 25.0% |
| !! | TGATTTGTATATCTTGATGA+TGG | + | tig0031536:22933-22952 | None:intergenic | 25.0% |
| ! | AAAGAAGATGGATATAAGAA+AGG | + | tig0031536:23057-23076 | None:intergenic | 25.0% |
| !!! | GAAACCCTAATTTTTTAGAA+AGG | - | tig0031536:23149-23168 | Msa1446900:intron | 25.0% |
| !!! | AACCCTAATTTTTTAGAAAG+GGG | - | tig0031536:23151-23170 | Msa1446900:intron | 25.0% |
| !! | TTCCCCTTTCTAAAAAATTA+GGG | + | tig0031536:23156-23175 | None:intergenic | 25.0% |
| ! | TTTAATATTTGGATACTCTC+CGG | - | tig0031536:23385-23404 | Msa1446900:intron | 25.0% |
| !! | TTAGAAAAGGTATACTCAAA+GGG | + | tig0031536:23541-23560 | None:intergenic | 25.0% |
| !! | TTTGAGTATACCTTTTCTAA+CGG | - | tig0031536:23541-23560 | Msa1446900:intron | 25.0% |
| ! | GTTATATCTGTATATTTCCA+TGG | - | tig0031536:23993-24012 | Msa1446900:intron | 25.0% |
| !! | TACTTCTATCATTTTATCCA+TGG | + | tig0031536:24013-24032 | None:intergenic | 25.0% |
| ! | AATATTCTCATAGAAAATGG+TGG | - | tig0031536:24102-24121 | Msa1446900:intron | 25.0% |
| ! | ATATTCTCATAGAAAATGGT+GGG | - | tig0031536:24103-24122 | Msa1446900:intron | 25.0% |
| ! | CTGAAACTATTATAATAGGA+AGG | + | tig0031536:24181-24200 | None:intergenic | 25.0% |
| ! | CTTCCTATTATAATAGTTTC+AGG | - | tig0031536:24179-24198 | Msa1446900:intron | 25.0% |
| !!! | TTCCTATGAATGTTATTTCT+GGG | + | tig0031536:24229-24248 | None:intergenic | 25.0% |
| !!! | ATTCCTATGAATGTTATTTC+TGG | + | tig0031536:24230-24249 | None:intergenic | 25.0% |
| ! | TGAAGAAAAATACAAAGGAA+GGG | + | tig0031536:24606-24625 | None:intergenic | 25.0% |
| ! | ATGAAGAAAAATACAAAGGA+AGG | + | tig0031536:24607-24626 | None:intergenic | 25.0% |
| ! | CAAAACATTAAGCATAAGTT+AGG | + | tig0031536:24658-24677 | None:intergenic | 25.0% |
| ! | TTATTCAAATCAATCCAAAC+AGG | + | tig0031536:24851-24870 | None:intergenic | 25.0% |
| !! | CATTGTCTTTTCTTGTTAAA+GGG | - | tig0031536:25150-25169 | Msa1446900:intron | 25.0% |
| !!! | TAGTAATTACGTTAGTTTTC+AGG | - | tig0031536:25242-25261 | Msa1446900:intron | 25.0% |
| !!! | AGTAATTACGTTAGTTTTCA+GGG | - | tig0031536:25243-25262 | Msa1446900:intron | 25.0% |
| !! | TCATCTTTTTCATCACTAAC+TGG | + | tig0031536:20703-20722 | None:intergenic | 30.0% |
| TAGTGATGAAAAAGATGAAG+AGG | - | tig0031536:20705-20724 | Msa1446900:three_prime_UTR | 30.0% | |
| AAATACCAATTGGATGTTTG+AGG | - | tig0031536:20755-20774 | Msa1446900:three_prime_UTR | 30.0% | |
| ! | TATTGTTTCTTCACATCCAA+AGG | - | tig0031536:20819-20838 | Msa1446900:three_prime_UTR | 30.0% |
| GCACCAACATTTCAAATTAA+AGG | + | tig0031536:21181-21200 | None:intergenic | 30.0% | |
| ! | TTTTCAAATAGATTGTCCTC+TGG | - | tig0031536:21628-21647 | Msa1446900:CDS | 30.0% |
| !!! | AGAATCTGTTTTGGTAGATT+TGG | - | tig0031536:21651-21670 | Msa1446900:intron | 30.0% |
| ! | CAAAATTGGGATTTTTCTTC+GGG | - | tig0031536:21707-21726 | Msa1446900:intron | 30.0% |
| !! | TATACATGTCAATTTTGACC+CGG | + | tig0031536:22078-22097 | None:intergenic | 30.0% |
| ! | TAAAATCTTGCGATTTTGCA+TGG | - | tig0031536:22128-22147 | Msa1446900:intron | 30.0% |
| !! | GATTTTGATGCGATTTTAGT+AGG | - | tig0031536:22158-22177 | Msa1446900:intron | 30.0% |
| CAATGAATTTGAATCGTTGA+AGG | - | tig0031536:22204-22223 | Msa1446900:intron | 30.0% | |
| ! | AGTCGCAAAATCTTGAATTT+TGG | - | tig0031536:22234-22253 | Msa1446900:intron | 30.0% |
| ! | GTCGCAAAATCTTGAATTTT+GGG | - | tig0031536:22235-22254 | Msa1446900:intron | 30.0% |
| !!! | TGAATTTTGGGATTTAAGTC+AGG | - | tig0031536:22247-22266 | Msa1446900:intron | 30.0% |
| TGTTACAATCTTGTGAGATT+TGG | - | tig0031536:22321-22340 | Msa1446900:intron | 30.0% | |
| AATATTGACGATTAAGAGAG+TGG | - | tig0031536:22723-22742 | Msa1446900:intron | 30.0% | |
| ! | AACACTAATGATGCTCTTTT+TGG | + | tig0031536:22778-22797 | None:intergenic | 30.0% |
| TTAAGTTACAGAGTTGTCTT+TGG | + | tig0031536:22975-22994 | None:intergenic | 30.0% | |
| TTAATTCCAACATCATCAAG+CGG | - | tig0031536:22991-23010 | Msa1446900:intron | 30.0% | |
| TTCTTTCCTTGACAAGAAAA+TGG | - | tig0031536:23071-23090 | Msa1446900:intron | 30.0% | |
| !! | TTCAACTTTTTCTTCCAAAG+TGG | + | tig0031536:23132-23151 | None:intergenic | 30.0% |
| ! | CTTCCCCTTTCTAAAAAATT+AGG | + | tig0031536:23157-23176 | None:intergenic | 30.0% |
| ! | GTTAGAAAAGGTATACTCAA+AGG | + | tig0031536:23542-23561 | None:intergenic | 30.0% |
| ! | CTTCATTGAAGAACAAGTTT+TGG | - | tig0031536:23567-23586 | Msa1446900:intron | 30.0% |
| !!! | CAGCTTTTAGAGTGTATTAA+AGG | + | tig0031536:23593-23612 | None:intergenic | 30.0% |
| !! | CACTCTAAAAGCTGAAATTT+TGG | - | tig0031536:23599-23618 | Msa1446900:intron | 30.0% |
| TGAAATCACATGTTGAAAGT+CGG | + | tig0031536:23803-23822 | None:intergenic | 30.0% | |
| TTCCCAGAAATAACATTCAT+AGG | - | tig0031536:24224-24243 | Msa1446900:intron | 30.0% | |
| TATGCAGTCAACATTTCTTA+AGG | + | tig0031536:24280-24299 | None:intergenic | 30.0% | |
| CATGCTAATTCTTTATGGAT+TGG | - | tig0031536:24311-24330 | Msa1446900:intron | 30.0% | |
| TATCCTGTCAAAGAATATGT+AGG | + | tig0031536:24388-24407 | None:intergenic | 30.0% | |
| TTCTCATAACTGAATGTATG+AGG | + | tig0031536:24708-24727 | None:intergenic | 30.0% | |
| GCATTAACATCAGCATAATA+TGG | - | tig0031536:24825-24844 | Msa1446900:intron | 30.0% | |
| TAAGCACTTATGAGATTGTT+TGG | - | tig0031536:24887-24906 | Msa1446900:intron | 30.0% | |
| AAGCACTTATGAGATTGTTT+GGG | - | tig0031536:24888-24907 | Msa1446900:intron | 30.0% | |
| GAAAAGTGAAAGTTGCTAAT+GGG | + | tig0031536:24934-24953 | None:intergenic | 30.0% | |
| TGAAAAGTGAAAGTTGCTAA+TGG | + | tig0031536:24935-24954 | None:intergenic | 30.0% | |
| ! | GCATTGTCTTTTCTTGTTAA+AGG | - | tig0031536:25149-25168 | Msa1446900:intron | 30.0% |
| AACGCATATAAGTTCTATAC+AGG | + | tig0031536:25285-25304 | None:intergenic | 30.0% | |
| TCACTGAAACAAATGAATCT+TGG | - | tig0031536:25429-25448 | Msa1446900:intron | 30.0% | |
| CACTGAAACAAATGAATCTT+GGG | - | tig0031536:25430-25449 | Msa1446900:intron | 30.0% | |
| ! | TTTTTGGATTACATGCACAA+GGG | - | tig0031536:25553-25572 | Msa1446900:CDS | 30.0% |
| TTCTTCCTCAAACATCCAAT+TGG | + | tig0031536:20763-20782 | None:intergenic | 35.0% | |
| CAAAGTCACGAAATCATGAT+TGG | - | tig0031536:20971-20990 | Msa1446900:CDS | 35.0% | |
| TATAACCACAATTGTTGGTC+TGG | - | tig0031536:21137-21156 | Msa1446900:intron | 35.0% | |
| !! | TTGAAATGTTGGTGCTACAA+AGG | - | tig0031536:21186-21205 | Msa1446900:intron | 35.0% |
| !! | AGAGGCCTTTTTCATTATTC+AGG | - | tig0031536:21309-21328 | Msa1446900:intron | 35.0% |
| GGTCTCCTGAATAATGAAAA+AGG | + | tig0031536:21317-21336 | None:intergenic | 35.0% | |
| !! | TTGCTTTGAGAGATTTGAAG+TGG | - | tig0031536:21361-21380 | Msa1446900:intron | 35.0% |
| TGTGTGAGGTTGTCAAAATT+GGG | - | tig0031536:21694-21713 | Msa1446900:intron | 35.0% | |
| !!! | GATTTTTCTTCGGGTTGAAA+GGG | - | tig0031536:21716-21735 | Msa1446900:intron | 35.0% |
| !! | CATACTAAGCTTTAGCTTGA+CGG | + | tig0031536:22406-22425 | None:intergenic | 35.0% |
| ! | AGCACTAACAATGTTCCTTT+TGG | + | tig0031536:22823-22842 | None:intergenic | 35.0% |
| !! | GTATATCTTGATGATGGGAA+TGG | + | tig0031536:22927-22946 | None:intergenic | 35.0% |
| TACAAATCAGCTTCCAAATC+CGG | - | tig0031536:22944-22963 | Msa1446900:intron | 35.0% | |
| GAAAGGACAATCAAGAATGT+GGG | + | tig0031536:23040-23059 | None:intergenic | 35.0% | |
| AGAAAGGACAATCAAGAATG+TGG | + | tig0031536:23041-23060 | None:intergenic | 35.0% | |
| TTCTTGTCAAGGAAAGAAGA+TGG | + | tig0031536:23069-23088 | None:intergenic | 35.0% | |
| !!! | CGTCATCCATTTTGAAGTAT+CGG | - | tig0031536:23465-23484 | Msa1446900:intron | 35.0% |
| !!! | GTCATCCATTTTGAAGTATC+GGG | - | tig0031536:23466-23485 | Msa1446900:intron | 35.0% |
| !!! | TCATCCATTTTGAAGTATCG+GGG | - | tig0031536:23467-23486 | Msa1446900:intron | 35.0% |
| !!! | TCAAAGGGTTGATGTCTTTT+GGG | + | tig0031536:23526-23545 | None:intergenic | 35.0% |
| AATGAAGAGACCGTTAGAAA+AGG | + | tig0031536:23554-23573 | None:intergenic | 35.0% | |
| GATTTATGTAGAGCTACACT+GGG | + | tig0031536:23646-23665 | None:intergenic | 35.0% | |
| AGATTTATGTAGAGCTACAC+TGG | + | tig0031536:23647-23666 | None:intergenic | 35.0% | |
| TGAAAGTCGGAGAAATATGA+TGG | + | tig0031536:23790-23809 | None:intergenic | 35.0% | |
| ! | TTTTGTGACTGCAATCGATT+TGG | + | tig0031536:23849-23868 | None:intergenic | 35.0% |
| CTTGAAACAAATACACCCTA+AGG | + | tig0031536:23974-23993 | None:intergenic | 35.0% | |
| CAGTGCATGCTAATTCTTTA+TGG | - | tig0031536:24306-24325 | Msa1446900:intron | 35.0% | |
| CATCCTACATATTCTTTGAC+AGG | - | tig0031536:24382-24401 | Msa1446900:intron | 35.0% | |
| ! | TCGCAAGCCAATAGTTTTTA+AGG | - | tig0031536:24451-24470 | Msa1446900:intron | 35.0% |
| AGTATGATCCTAATCTTCCT+TGG | - | tig0031536:24495-24514 | Msa1446900:intron | 35.0% | |
| GTATGATCCTAATCTTCCTT+GGG | - | tig0031536:24496-24515 | Msa1446900:intron | 35.0% | |
| GGAAGGGTAAGTTTATTTAC+AGG | + | tig0031536:24590-24609 | None:intergenic | 35.0% | |
| !! | TGAGGAAAGATTGAGTTGAA+TGG | + | tig0031536:24690-24709 | None:intergenic | 35.0% |
| AATCAGAGTGACAATTCTCT+AGG | - | tig0031536:24726-24745 | Msa1446900:intron | 35.0% | |
| !! | TTTATTTTCACAAGCTCTCC+AGG | - | tig0031536:24956-24975 | Msa1446900:CDS | 35.0% |
| CTATATGAGTTGTTTGCACA+TGG | + | tig0031536:24986-25005 | None:intergenic | 35.0% | |
| AGTTCTATACAGGAGTTCTA+GGG | + | tig0031536:25275-25294 | None:intergenic | 35.0% | |
| AAGTTCTATACAGGAGTTCT+AGG | + | tig0031536:25276-25295 | None:intergenic | 35.0% | |
| !!! | AATTACTTTTTGTCAGCTGC+CGG | - | tig0031536:25317-25336 | Msa1446900:intron | 35.0% |
| TATGTAGAGCAACATCCATT+TGG | - | tig0031536:25395-25414 | Msa1446900:intron | 35.0% | |
| AACATCCATTTGGTCAAGAA+CGG | - | tig0031536:25405-25424 | Msa1446900:intron | 35.0% | |
| CAACCTGAAAAGTGAAAACA+TGG | - | tig0031536:25491-25510 | Msa1446900:CDS | 35.0% | |
| !! | CAACCATGTTTTCACTTTTC+AGG | + | tig0031536:25497-25516 | None:intergenic | 35.0% |
| ! | CTTTTTGGATTACATGCACA+AGG | - | tig0031536:25552-25571 | Msa1446900:CDS | 35.0% |
| ACAAGGGCTTAAGAAATTTG+CGG | - | tig0031536:25569-25588 | Msa1446900:CDS | 35.0% | |
| ACTACACAGTTGTTCAACTT+AGG | + | tig0031536:25656-25675 | None:intergenic | 35.0% | |
| TGTTTCTTCACATCCAAAGG+AGG | - | tig0031536:20822-20841 | Msa1446900:three_prime_UTR | 40.0% | |
| TACCAAAACAGATTCTCCAG+AGG | + | tig0031536:21647-21666 | None:intergenic | 40.0% | |
| CCTCACACACGTATATACTA+AGG | + | tig0031536:21683-21702 | None:intergenic | 40.0% | |
| CCTTAGTATATACGTGTGTG+AGG | - | tig0031536:21680-21699 | Msa1446900:intron | 40.0% | |
| GTGTGTGAGGTTGTCAAAAT+TGG | - | tig0031536:21693-21712 | Msa1446900:intron | 40.0% | |
| !!! | GGATTTTTCTTCGGGTTGAA+AGG | - | tig0031536:21715-21734 | Msa1446900:intron | 40.0% |
| GTTTGTACATGTGACTCAGT+TGG | + | tig0031536:22056-22075 | None:intergenic | 40.0% | |
| ACTGAGTCACATGTACAAAC+CGG | - | tig0031536:22056-22075 | Msa1446900:intron | 40.0% | |
| !! | ATTTTTCCGTATCGGCGTAT+CGG | + | tig0031536:22551-22570 | None:intergenic | 40.0% |
| AAATCAAGATACGATACGGC+TGG | - | tig0031536:22576-22595 | Msa1446900:intron | 40.0% | |
| AATCAAGATACGATACGGCT+GGG | - | tig0031536:22577-22596 | Msa1446900:intron | 40.0% | |
| ATGTTAATGTGATACGAGCC+TGG | + | tig0031536:22693-22712 | None:intergenic | 40.0% | |
| CGATCCAAAAAAGAACCCAT+CGG | - | tig0031536:22852-22871 | Msa1446900:intron | 40.0% | |
| !! | TGTTAACTCTTAGCACCGAT+GGG | + | tig0031536:22870-22889 | None:intergenic | 40.0% |
| !! | TATCTTGATGATGGGAATGG+AGG | + | tig0031536:22924-22943 | None:intergenic | 40.0% |
| AGAGTTGTCTTTGGATGAAC+CGG | + | tig0031536:22966-22985 | None:intergenic | 40.0% | |
| GGAAGATGCAATTGTTTGTG+TGG | - | tig0031536:23172-23191 | Msa1446900:intron | 40.0% | |
| ATGCAATTGTTTGTGTGGTG+TGG | - | tig0031536:23177-23196 | Msa1446900:intron | 40.0% | |
| !!! | CTCAAAGGGTTGATGTCTTT+TGG | + | tig0031536:23527-23546 | None:intergenic | 40.0% |
| ! | AAGCTGAAATTTTGGATCCC+AGG | - | tig0031536:23607-23626 | Msa1446900:intron | 40.0% |
| GACCGATGTTACAATCCTTA+GGG | - | tig0031536:23956-23975 | Msa1446900:intron | 40.0% | |
| CACCCTAAGGATTGTAACAT+CGG | + | tig0031536:23961-23980 | None:intergenic | 40.0% | |
| ! | CCTAGGAATCTTTTATTCCC+AGG | + | tig0031536:24075-24094 | None:intergenic | 40.0% |
| CCTGGGAATAAAAGATTCCT+AGG | - | tig0031536:24072-24091 | Msa1446900:intron | 40.0% | |
| TTGTAATATCCCTTCTCCCA+AGG | + | tig0031536:24515-24534 | None:intergenic | 40.0% | |
| ! | TGAGTCAAACACTTTGCTGT+TGG | - | tig0031536:24535-24554 | Msa1446900:intron | 40.0% |
| TCAGCATAATATGGCCTGTT+TGG | - | tig0031536:24834-24853 | Msa1446900:intron | 40.0% | |
| TGAGATTGTTTGGGAGAGTT+CGG | - | tig0031536:24897-24916 | Msa1446900:intron | 40.0% | |
| GATCTACGCCAATATCTAGA+AGG | - | tig0031536:25344-25363 | Msa1446900:intron | 40.0% | |
| TTGCCAGTCCTTCTAGATAT+TGG | + | tig0031536:25355-25374 | None:intergenic | 40.0% | |
| !! | ACTGGCAAGTGCTGAAAATA+TGG | - | tig0031536:25367-25386 | Msa1446900:intron | 40.0% |
| GTGTTAGCGCAGTATAAGAT+TGG | - | tig0031536:25674-25693 | Msa1446900:CDS | 40.0% | |
| CTTACATGATCTCCTGCCTA+TGG | + | tig0031536:20863-20882 | None:intergenic | 45.0% | |
| CAACACCAGACCAACAATTG+TGG | + | tig0031536:21145-21164 | None:intergenic | 45.0% | |
| ! | CACAATTGTTGGTCTGGTGT+TGG | - | tig0031536:21143-21162 | Msa1446900:intron | 45.0% |
| ! | AGAGATTTGAAGTGGCTGTG+TGG | - | tig0031536:21369-21388 | Msa1446900:intron | 45.0% |
| !! | GTCCTCTGGAGAATCTGTTT+TGG | - | tig0031536:21642-21661 | Msa1446900:intron | 45.0% |
| CTGAGTCACATGTACAAACC+GGG | - | tig0031536:22057-22076 | Msa1446900:intron | 45.0% | |
| CCGTATCGTATCTCGTATCT+GGG | + | tig0031536:22515-22534 | None:intergenic | 45.0% | |
| CCCAGATACGAGATACGATA+CGG | - | tig0031536:22512-22531 | Msa1446900:intron | 45.0% | |
| TCCGTATCGTATCTCGTATC+TGG | + | tig0031536:22516-22535 | None:intergenic | 45.0% | |
| !!! | AGCACCGATGGGTTCTTTTT+TGG | + | tig0031536:22859-22878 | None:intergenic | 45.0% |
| ! | GTGTTAACTCTTAGCACCGA+TGG | + | tig0031536:22871-22890 | None:intergenic | 45.0% |
| GTCTTTGGATGAACCGGATT+TGG | + | tig0031536:22960-22979 | None:intergenic | 45.0% | |
| !! | CATGAACCGCTTGATGATGT+TGG | + | tig0031536:23000-23019 | None:intergenic | 45.0% |
| AAAATGGCCGAGCAGTTCAA+CGG | - | tig0031536:23087-23106 | Msa1446900:intron | 45.0% | |
| ATTGTTTGTGTGGTGTGGTG+TGG | - | tig0031536:23182-23201 | Msa1446900:intron | 45.0% | |
| TTGTTTGTGTGGTGTGGTGT+GGG | - | tig0031536:23183-23202 | Msa1446900:intron | 45.0% | |
| ACACAAGTATCCGTGCGTAT+CGG | - | tig0031536:23317-23336 | Msa1446900:intron | 45.0% | |
| GATACTCTCCGGATACGTAT+CGG | - | tig0031536:23396-23415 | Msa1446900:intron | 45.0% | |
| ATACTCTCCGGATACGTATC+GGG | - | tig0031536:23397-23416 | Msa1446900:intron | 45.0% | |
| GATACTTCCCGATACGTATC+CGG | + | tig0031536:23407-23426 | None:intergenic | 45.0% | |
| ! | GGATACGTATCGGGAAGTAT+CGG | - | tig0031536:23406-23425 | Msa1446900:intron | 45.0% |
| !! | GATACGTATCGGGAAGTATC+GGG | - | tig0031536:23407-23426 | Msa1446900:intron | 45.0% |
| GAAGCCCCGATACTTCAAAA+TGG | + | tig0031536:23474-23493 | None:intergenic | 45.0% | |
| !!! | AGGGTTGATGTCTTTTGGGT+GGG | + | tig0031536:23522-23541 | None:intergenic | 45.0% |
| !!! | AAGGGTTGATGTCTTTTGGG+TGG | + | tig0031536:23523-23542 | None:intergenic | 45.0% |
| CGACCGATGTTACAATCCTT+AGG | - | tig0031536:23955-23974 | Msa1446900:intron | 45.0% | |
| TCCTAATCTTCCTTGGGAGA+AGG | - | tig0031536:24502-24521 | Msa1446900:intron | 45.0% | |
| CCTAATCTTCCTTGGGAGAA+GGG | - | tig0031536:24503-24522 | Msa1446900:intron | 45.0% | |
| AGGATTAAGCAGTGCCTTGT+GGG | + | tig0031536:24570-24589 | None:intergenic | 45.0% | |
| TTGTTTGCACATGGCTATCC+TGG | + | tig0031536:24977-24996 | None:intergenic | 45.0% | |
| AAAGCATAGCAAGTTCTGCG+AGG | + | tig0031536:25193-25212 | None:intergenic | 45.0% | |
| ACGCCAATATCTAGAAGGAC+TGG | - | tig0031536:25349-25368 | Msa1446900:intron | 45.0% | |
| GTGATCCGTTCTTGACCAAA+TGG | + | tig0031536:25413-25432 | None:intergenic | 45.0% | |
| GTCACACCAGATGCAACCAT+AGG | - | tig0031536:20844-20863 | Msa1446900:CDS | 50.0% | |
| ATCTCGTATCTGGGCTTCAC+AGG | + | tig0031536:22506-22525 | None:intergenic | 50.0% | |
| !! | TGATGATGGGAATGGAGGAG+AGG | + | tig0031536:22919-22938 | None:intergenic | 50.0% |
| !! | GCTCGGCCATTTTCTTGTCA+AGG | + | tig0031536:23080-23099 | None:intergenic | 50.0% |
| CACAAGTATCCGTGCGTATC+GGG | - | tig0031536:23318-23337 | Msa1446900:intron | 50.0% | |
| ! | CGGGATGTATCGGGAAGTAT+CGG | - | tig0031536:23337-23356 | Msa1446900:intron | 50.0% |
| !! | TGTCTTTTGGGTGGGACTAG+TGG | + | tig0031536:23514-23533 | None:intergenic | 50.0% |
| TGGGCGTAGAGGATAATCCT+GGG | + | tig0031536:23627-23646 | None:intergenic | 50.0% | |
| ! | GGCATTTTGTCCCATGCTCT+AGG | + | tig0031536:23769-23788 | None:intergenic | 50.0% |
| CCCTTCTCCCAAGGAAGATT+AGG | + | tig0031536:24506-24525 | None:intergenic | 50.0% | |
| GTTGGATGATTCTCCCCACA+AGG | - | tig0031536:24553-24572 | Msa1446900:intron | 50.0% | |
| GGATTAAGCAGTGCCTTGTG+GGG | + | tig0031536:24569-24588 | None:intergenic | 50.0% | |
| CAGGATTAAGCAGTGCCTTG+TGG | + | tig0031536:24571-24590 | None:intergenic | 50.0% | |
| !! | TACTTTTTGTCAGCTGCCGG+AGG | - | tig0031536:25320-25339 | Msa1446900:intron | 50.0% |
| ATATTGGCGTAGATCGCCTC+CGG | + | tig0031536:25339-25358 | None:intergenic | 50.0% | |
| GCATCTGGTGTGACCTCCTT+TGG | + | tig0031536:20838-20857 | None:intergenic | 55.0% | |
| CACCAGATGCAACCATAGGC+AGG | - | tig0031536:20848-20867 | Msa1446900:CDS | 55.0% | |
| CTCCTGCCTATGGTTGCATC+TGG | + | tig0031536:20853-20872 | None:intergenic | 55.0% | |
| TGGCTGTGTGGTCTTCACGT+TGG | - | tig0031536:21381-21400 | Msa1446900:intron | 55.0% | |
| ! | ACTGCACCGATACGCCGATA+CGG | - | tig0031536:22542-22561 | Msa1446900:intron | 55.0% |
| TTGGCCACCGTTGAACTGCT+CGG | + | tig0031536:23097-23116 | None:intergenic | 55.0% | |
| CAGTTCAACGGTGGCCAAAG+TGG | - | tig0031536:23099-23118 | Msa1446900:intron | 55.0% | |
| TCAACGGTGGCCAAAGTGGA+CGG | - | tig0031536:23103-23122 | Msa1446900:intron | 55.0% | |
| AAAGTGGTCGCCGTCCACTT+TGG | + | tig0031536:23116-23135 | None:intergenic | 55.0% | |
| AAAGTGGACGGCGACCACTT+TGG | - | tig0031536:23115-23134 | Msa1446900:intron | 55.0% | |
| CCGATACATCCCGATACGCA+CGG | + | tig0031536:23330-23349 | None:intergenic | 55.0% | |
| CCGTGCGTATCGGGATGTAT+CGG | - | tig0031536:23327-23346 | Msa1446900:intron | 55.0% | |
| CGTGCGTATCGGGATGTATC+GGG | - | tig0031536:23328-23347 | Msa1446900:intron | 55.0% | |
| !! | GGGAAGTATCGGGCAGGTAT+CGG | - | tig0031536:23417-23436 | Msa1446900:intron | 55.0% |
| ! | GTATCGGTGCAGGATACGCA+GGG | - | tig0031536:23433-23452 | Msa1446900:intron | 55.0% |
| TATCGGTGCAGGATACGCAG+GGG | - | tig0031536:23434-23453 | Msa1446900:intron | 55.0% | |
| TGCAGGATACGCAGGGGATA+CGG | - | tig0031536:23440-23459 | Msa1446900:intron | 55.0% | |
| ! | TTGGGTGGGACTAGTGGCTT+GGG | + | tig0031536:23508-23527 | None:intergenic | 55.0% |
| ! | TTTGGGTGGGACTAGTGGCT+TGG | + | tig0031536:23509-23528 | None:intergenic | 55.0% |
| CTGGGCGTAGAGGATAATCC+TGG | + | tig0031536:23628-23647 | None:intergenic | 55.0% | |
| TAGAGCTACACTGGGCGTAG+AGG | + | tig0031536:23638-23657 | None:intergenic | 55.0% | |
| AGTCCCTACGCCTAGAGCAT+GGG | - | tig0031536:23756-23775 | Msa1446900:intron | 55.0% | |
| ! | TGTCCCATGCTCTAGGCGTA+GGG | + | tig0031536:23762-23781 | None:intergenic | 55.0% |
| ! | TTGTCCCATGCTCTAGGCGT+AGG | + | tig0031536:23763-23782 | None:intergenic | 55.0% |
| ATGGCCGAGCAGTTCAACGG+TGG | - | tig0031536:23090-23109 | Msa1446900:intron | 60.0% | |
| TGGTGTGGTGTGGGTCGTAC+TGG | - | tig0031536:23192-23211 | Msa1446900:intron | 60.0% | |
| !! | CGTATCGGGAAGTATCGGGC+AGG | - | tig0031536:23411-23430 | Msa1446900:intron | 60.0% |
| !! | TATCGGGCAGGTATCGGTGC+AGG | - | tig0031536:23423-23442 | Msa1446900:intron | 60.0% |
| !! | GGTATCGGTGCAGGATACGC+AGG | - | tig0031536:23432-23451 | Msa1446900:intron | 60.0% |
| CAGTCCCTACGCCTAGAGCA+TGG | - | tig0031536:23755-23774 | Msa1446900:intron | 60.0% | |
| GCTCGTGTGTCTAGCGCAGC+TGG | - | tig0031536:23685-23704 | Msa1446900:intron | 65.0% | |
| AGGGACTGCTGCGCTAGGTG+CGG | + | tig0031536:23743-23762 | None:intergenic | 65.0% | |
| GGCGTAGGGACTGCTGCGCT+AGG | + | tig0031536:23748-23767 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0031536 | gene | 20640 | 25707 | 20640 | ID=Msa1446900;Name=Msa1446900 |
| tig0031536 | mRNA | 20640 | 25707 | 20640 | ID=Msa1446900-mRNA-1;Parent=Msa1446900;Name=Msa1446900-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.8|0.66|1|1|1|6|202|275 |
| tig0031536 | exon | 20640 | 21014 | 20640 | ID=Msa1446900-mRNA-1:exon:15622;Parent=Msa1446900-mRNA-1 |
| tig0031536 | exon | 21600 | 21660 | 21600 | ID=Msa1446900-mRNA-1:exon:15621;Parent=Msa1446900-mRNA-1 |
| tig0031536 | exon | 21758 | 21943 | 21758 | ID=Msa1446900-mRNA-1:exon:15620;Parent=Msa1446900-mRNA-1 |
| tig0031536 | exon | 24777 | 24843 | 24777 | ID=Msa1446900-mRNA-1:exon:15619;Parent=Msa1446900-mRNA-1 |
| tig0031536 | exon | 24942 | 25044 | 24942 | ID=Msa1446900-mRNA-1:exon:15618;Parent=Msa1446900-mRNA-1 |
| tig0031536 | exon | 25470 | 25707 | 25470 | ID=Msa1446900-mRNA-1:exon:15617;Parent=Msa1446900-mRNA-1 |
| tig0031536 | CDS | 25470 | 25707 | 25470 | ID=Msa1446900-mRNA-1:cds;Parent=Msa1446900-mRNA-1 |
| tig0031536 | CDS | 24942 | 25044 | 24942 | ID=Msa1446900-mRNA-1:cds;Parent=Msa1446900-mRNA-1 |
| tig0031536 | CDS | 24777 | 24843 | 24777 | ID=Msa1446900-mRNA-1:cds;Parent=Msa1446900-mRNA-1 |
| tig0031536 | CDS | 21758 | 21943 | 21758 | ID=Msa1446900-mRNA-1:cds;Parent=Msa1446900-mRNA-1 |
| tig0031536 | CDS | 21600 | 21660 | 21600 | ID=Msa1446900-mRNA-1:cds;Parent=Msa1446900-mRNA-1 |
| tig0031536 | CDS | 20842 | 21014 | 20842 | ID=Msa1446900-mRNA-1:cds;Parent=Msa1446900-mRNA-1 |
| tig0031536 | three_prime_UTR | 20640 | 20841 | 20640 | ID=Msa1446900-mRNA-1:three_prime_utr;Parent=Msa1446900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
