AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0656680


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0656680 MtrunA17_Chr8g0378531 94.175 412 23 1 1 411 73 484 0.0 761
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0656680 AT1G55280.1 47.355 397 180 10 20 408 14 389 1.21e-107 323
Msa0656680 AT1G55280.2 47.355 397 180 10 20 408 59 434 5.84e-107 323

Find 97 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGCAAGACTTGAGGCTATT+TGG 0.152892 4_3:+66032838 Msa0656680:CDS
AAAATTAGTATCAGAGAATT+TGG 0.170887 4_3:-66031491 None:intergenic
TGCAATGCAATTCGTGCTTT+TGG 0.220214 4_3:+66031305 None:intergenic
AACTTCTGCCCAAGTGTTAT+AGG 0.238819 4_3:-66034376 None:intergenic
ATAAATCCAAATCTTTATTC+AGG 0.239984 4_3:+66032610 Msa0656680:CDS
GTAAGTGTGGCATTGACTTT+AGG 0.270375 4_3:+66034223 Msa0656680:CDS
CTTGACCCTGAATAAAGATT+TGG 0.283207 4_3:-66032616 None:intergenic
ATTTGGGTCGGTGTTGATTC+AGG 0.287536 4_3:+66032855 Msa0656680:CDS
ATTCCAACTATGATATCTTT+TGG 0.298685 4_3:-66034304 None:intergenic
ATTCATCAACAGAACCTCTT+TGG 0.299534 4_3:-66032794 None:intergenic
TAAGTGTGGCATTGACTTTA+GGG 0.316132 4_3:+66034224 Msa0656680:CDS
CACTGGTATTCTCTTCAATA+TGG 0.322369 4_3:-66032724 None:intergenic
CCTTTGAGATGACAGGAGTT+TGG 0.322539 4_3:-66033943 None:intergenic
TGCAAGACTTGAGGCTATTT+GGG 0.323891 4_3:+66032839 Msa0656680:CDS
GCTTTCTTTGTTGGTGGGAT+TGG 0.336342 4_3:+66034082 Msa0656680:CDS
ACCGATCATTCTACAGAATC+AGG 0.346191 4_3:+66032756 Msa0656680:CDS
GGAACTGATGCATTATTTAG+AGG 0.356287 4_3:+66034184 Msa0656680:CDS
ACCGGGTTCGCTTTCTTTGT+TGG 0.369998 4_3:+66034073 Msa0656680:CDS
TATGGTGGTACCTCTTCTTC+TGG 0.372818 4_3:-66033764 None:intergenic
ACCTCTTCTTCTGGCAATGA+TGG 0.373177 4_3:-66033755 None:intergenic
TTCAGAATTTATGACTGTTA+AGG 0.381614 4_3:-66033726 None:intergenic
AACACTTGGGCAGAAGTTAC+TGG 0.389418 4_3:+66034381 Msa0656680:CDS
ATTTGAGCCATATAAGTTGC+TGG 0.397282 4_3:-66032646 None:intergenic
TTGGTTACCAGCAACTTATA+TGG 0.399396 4_3:+66032639 Msa0656680:CDS
CTTTCTTCCTTTGAGATGAC+AGG 0.409228 4_3:-66033950 None:intergenic
CCAATACGACTTTCGAATTG+AGG 0.415792 4_3:+66033796 Msa0656680:CDS
TTCTTTGTTGGTGGGATTGG+AGG 0.421123 4_3:+66034085 Msa0656680:CDS
AGGTATGTGGACGGATTGCC+AGG 0.423984 4_3:+66034133 Msa0656680:CDS
CTATGCTTGATAGACGTAGA+TGG 0.426250 4_3:+66032696 Msa0656680:CDS
TGCATTATTTAGAGGATTGA+AGG 0.430785 4_3:+66034192 Msa0656680:CDS
CCTCAATTCGAAAGTCGTAT+TGG 0.435999 4_3:-66033796 None:intergenic
CTCTCAGCTGGTGAAAATAC+CGG 0.436324 4_3:+66034055 Msa0656680:CDS
TCAAGCTGAGTCACAAGGTT+AGG 0.450248 4_3:-66033866 None:intergenic
TTCCTCTAAGGTCAGGTCAA+TGG 0.462389 4_3:+66033687 Msa0656680:intron
CTCTAGTGATACACTATGTT+AGG 0.465225 4_3:+66034448 Msa0656680:exon
ACACCAAAAGATATCATAGT+TGG 0.465828 4_3:+66034301 Msa0656680:CDS
AATATAAGTGACTTCAATGC+TGG 0.469726 4_3:+66032666 Msa0656680:CDS
TGGCAAAACAACTGATGGTC+TGG 0.469882 4_3:-66032523 None:intergenic
AACCTTGTGACTCAGCTTGA+AGG 0.472386 4_3:+66033869 Msa0656680:CDS
GGTTCGCTTTCTTTGTTGGT+GGG 0.473259 4_3:+66034077 Msa0656680:CDS
GATATCATAGTTGGAATGAT+GGG 0.476033 4_3:+66034310 Msa0656680:CDS
TCGTATTGGAAGCCGGTGTA+TGG 0.480131 4_3:-66033782 None:intergenic
AGATATCATAGTTGGAATGA+TGG 0.485907 4_3:+66034309 Msa0656680:CDS
CGAATTGAGGATGCATTGCT+TGG 0.486399 4_3:+66033809 Msa0656680:CDS
ATCTTTATTCAGGGTCAAGT+TGG 0.488774 4_3:+66032620 Msa0656680:CDS
GCATTTAAGCCTATAACACT+TGG 0.489741 4_3:+66034367 Msa0656680:CDS
TAAATCCAAATCTTTATTCA+GGG 0.498208 4_3:+66032611 Msa0656680:CDS
TGTATCTGCTATTGTTGCAG+AGG 0.499344 4_3:+66034113 Msa0656680:CDS
GGGTTCGCTTTCTTTGTTGG+TGG 0.499672 4_3:+66034076 Msa0656680:CDS
GTCAATGCCACACTTACTAT+AGG 0.502910 4_3:-66034217 None:intergenic
TCAATTGCTTCCCTCTCAGC+TGG 0.512231 4_3:+66034043 Msa0656680:CDS
ATGTAAAGTTTCTGTGGTGT+TGG 0.512933 4_3:+66034342 Msa0656680:CDS
TACTTTATCTTCCCTTGAGG+AGG 0.516988 4_3:+66032587 Msa0656680:CDS
TAGGCATAACTCAATACAAA+TGG 0.519513 4_3:+66034467 Msa0656680:three_prime_UTR
CATACTTTCACGTCAGAGGC+TGG 0.524216 4_3:-66032543 None:intergenic
CCCTGATTCTGTAGAATGAT+CGG 0.525561 4_3:-66032757 None:intergenic
ACCAACAAAGAAAGCGAACC+CGG 0.525652 4_3:-66034074 None:intergenic
ACTTGAAATTCTTCTAGAAG+AGG 0.530331 4_3:-66031440 None:intergenic
ATTTGGATTTATCCTCCTCA+AGG 0.531242 4_3:-66032599 None:intergenic
GATATACTTCATTTCCAAAG+AGG 0.531996 4_3:+66032780 Msa0656680:CDS
AAGGTTCAGAGCTATAGCTA+TGG 0.534181 4_3:+66031333 Msa0656680:exon
TAACAGTCATAAATTCTGAA+TGG 0.537218 4_3:+66033729 Msa0656680:CDS
ACCTTGTGACTCAGCTTGAA+GGG 0.543737 4_3:+66033870 Msa0656680:CDS
GCATTATTTAGAGGATTGAA+GGG 0.551480 4_3:+66034193 Msa0656680:CDS
TTTGTAGTGAAGTATAGCTC+AGG 0.553123 4_3:+66034256 Msa0656680:CDS
AGACTTGAGGCTATTTGGGT+CGG 0.558381 4_3:+66032843 Msa0656680:CDS
TCTTGCATGTAAAGTTTCTG+TGG 0.561151 4_3:+66034336 Msa0656680:CDS
ACCATCATTGCCAGAAGAAG+AGG 0.565997 4_3:+66033754 Msa0656680:CDS
GAGGCTGGCAAAACAACTGA+TGG 0.567913 4_3:-66032528 None:intergenic
TTGTGAATGAGTGAAGTTGA+AGG 0.568987 4_3:-66031382 None:intergenic
TGATCGGTCATCAAACTCAC+TGG 0.570085 4_3:-66032741 None:intergenic
GCTATTGTTGCAGAGGTATG+TGG 0.570298 4_3:+66034120 Msa0656680:CDS
AGGTCAGGTCAATGGAGACT+AGG 0.573348 4_3:+66033695 Msa0656680:intron
TCGAAAGTCGTATTGGAAGC+CGG 0.576014 4_3:-66033789 None:intergenic
CATCTCAAAGGAAGAAAGCA+TGG 0.576259 4_3:+66033955 Msa0656680:CDS
CCGATCATTCTACAGAATCA+GGG 0.579731 4_3:+66032757 Msa0656680:CDS
CCAAACTCCTGTCATCTCAA+AGG 0.580577 4_3:+66033943 Msa0656680:CDS
TGTGACTCAGCTTGAAGGGA+CGG 0.586916 4_3:+66033874 Msa0656680:CDS
AGGAACTGATCTATCCATGT+TGG 0.588578 4_3:+66033835 Msa0656680:CDS
CATCTACGTCTATCAAGCAT+AGG 0.594306 4_3:-66032695 None:intergenic
AAATACTTTATCTTCCCTTG+AGG 0.599620 4_3:+66032584 Msa0656680:CDS
TGTGCATACTTTCACGTCAG+AGG 0.601261 4_3:-66032547 None:intergenic
TTTGGATTTATCCTCCTCAA+GGG 0.602029 4_3:-66032598 None:intergenic
TCTCAGCTGGTGAAAATACC+GGG 0.602142 4_3:+66034056 Msa0656680:CDS
TATTGGAAGCCGGTGTATGG+TGG 0.603889 4_3:-66033779 None:intergenic
AAATTAATCACAAGCAACAA+AGG 0.606917 4_3:+66034160 Msa0656680:CDS
GAGGATGCATTGCTTGGTGA+AGG 0.609971 4_3:+66033815 Msa0656680:CDS
CATTTAAGCCTATAACACTT+GGG 0.611508 4_3:+66034368 Msa0656680:CDS
GAAGGGTCCTATAGTAAGTG+TGG 0.617641 4_3:+66034210 Msa0656680:CDS
TCCCTTCAAGCTGAGTCACA+AGG 0.621122 4_3:-66033871 None:intergenic
CGATCATTCTACAGAATCAG+GGG 0.632486 4_3:+66032758 Msa0656680:CDS
CTAGAATTTATATATATCGA+CGG 0.646845 4_3:+66034507 Msa0656680:three_prime_UTR
GTTAGGTCTTAATTCCAACA+TGG 0.676496 4_3:-66033849 None:intergenic
TTAATCACAAGCAACAAAGG+AGG 0.678453 4_3:+66034163 Msa0656680:CDS
TTGTTGCAGAGGTATGTGGA+CGG 0.680400 4_3:+66034124 Msa0656680:CDS
GAAGAGGTACCACCATACAC+CGG 0.692574 4_3:+66033770 Msa0656680:CDS
CTCAAAGGAAGAAAGCATGG+AGG 0.740445 4_3:+66033958 Msa0656680:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAAAAATCTTAACTTTTA+AGG + chr4_3:66031550-66031569 Msa0656680:intron 10.0%
!!! AAATATATGATTCAAAATTT+TGG + chr4_3:66031689-66031708 Msa0656680:intron 10.0%
!!! AAAAATAAAAGTACTTTATT+TGG - chr4_3:66032392-66032411 None:intergenic 10.0%
!!! ATTCTAGTATATATTTTTTT+TGG + chr4_3:66032884-66032903 Msa0656680:intron 10.0%
!!! AATATAGAAATTTAAAGTTT+TGG - chr4_3:66033574-66033593 None:intergenic 10.0%
!!! ATTTGTTTTTGTTAAAGTAT+TGG + chr4_3:66031883-66031902 Msa0656680:intron 15.0%
!! TTTCAAAAATAAAATATGTG+AGG - chr4_3:66031913-66031932 None:intergenic 15.0%
!! AAAATTAGTATCAGAGAATT+TGG - chr4_3:66031494-66031513 None:intergenic 20.0%
!!! TTTAACTGTTCTCTTTATTT+TGG + chr4_3:66031594-66031613 Msa0656680:intron 20.0%
!!! TTAACTGTTCTCTTTATTTT+GGG + chr4_3:66031595-66031614 Msa0656680:intron 20.0%
!!! TATATGATTCAAAATTTTGG+AGG + chr4_3:66031692-66031711 Msa0656680:intron 20.0%
!!! AATTTTGGAGGTATTTTTAT+TGG + chr4_3:66031704-66031723 Msa0656680:intron 20.0%
!! GTATATTAAATATTTCAGTG+TGG + chr4_3:66031988-66032007 Msa0656680:intron 20.0%
!!! AAATTGTAACTTTTGTAACA+CGG - chr4_3:66032163-66032182 None:intergenic 20.0%
!!! TTTAGAGTTTGAAAAGATAA+CGG + chr4_3:66032180-66032199 Msa0656680:intron 20.0%
!!! TACATATAACAAATGACTTT+TGG - chr4_3:66032423-66032442 None:intergenic 20.0%
!! ATAAATCCAAATCTTTATTC+AGG + chr4_3:66032610-66032629 Msa0656680:CDS 20.0%
!! TAAATCCAAATCTTTATTCA+GGG + chr4_3:66032611-66032630 Msa0656680:CDS 20.0%
!! TAACATTTCTGTTTAAAAAC+TGG - chr4_3:66033036-66033055 None:intergenic 20.0%
!! AACTTTCTAAATTGTTAACA+GGG + chr4_3:66033089-66033108 Msa0656680:intron 20.0%
!! ATTTGGTTAATAGATATATC+AGG + chr4_3:66033140-66033159 Msa0656680:intron 20.0%
!! ATATTATTAACCATGATTTC+AGG - chr4_3:66033266-66033285 None:intergenic 20.0%
!! GTTAATAATATTCGAATTCA+TGG + chr4_3:66033275-66033294 Msa0656680:intron 20.0%
!! TATTGTTTGAACATCAATTT+GGG - chr4_3:66033428-66033447 None:intergenic 20.0%
!! ATATTGTTTGAACATCAATT+TGG - chr4_3:66033429-66033448 None:intergenic 20.0%
!!! TGATGTTCAAACAATATTTT+TGG + chr4_3:66033432-66033451 Msa0656680:intron 20.0%
!!! ATAGAAATTTAAAGTTTTGG+AGG - chr4_3:66033571-66033590 None:intergenic 20.0%
!!! TCTTTTTTGAACAAACTTAT+AGG - chr4_3:66033902-66033921 None:intergenic 20.0%
!! CTAGAATTTATATATATCGA+CGG + chr4_3:66034507-66034526 Msa0656680:three_prime_UTR 20.0%
!! TTCTCTGATACTAATTTTCA+AGG + chr4_3:66031496-66031515 Msa0656680:CDS 25.0%
! TAACGAAGAAATTAAGAAGT+GGG - chr4_3:66031526-66031545 None:intergenic 25.0%
! TTAACGAAGAAATTAAGAAG+TGG - chr4_3:66031527-66031546 None:intergenic 25.0%
!! AAGGTTTAGTTTCACTTAAA+TGG + chr4_3:66031569-66031588 Msa0656680:intron 25.0%
! ATTTGATGTTTGCCTATATA+TGG + chr4_3:66031809-66031828 Msa0656680:intron 25.0%
! TCATCATATATGCCATATAT+AGG - chr4_3:66031824-66031843 None:intergenic 25.0%
! TGTTTGTAGTTATTATTGTC+AGG + chr4_3:66031954-66031973 Msa0656680:intron 25.0%
! TATTTAATATACCACTTGCT+AGG - chr4_3:66031980-66031999 None:intergenic 25.0%
! GAGTACTTAATGATTATAGT+TGG + chr4_3:66032012-66032031 Msa0656680:intron 25.0%
!!! TGATTATAGTTGGTTAGTTT+TGG + chr4_3:66032022-66032041 Msa0656680:intron 25.0%
!!! TGTTGATGAATTCATTTTTG+AGG + chr4_3:66032806-66032825 Msa0656680:CDS 25.0%
!!! GTTGATGAATTCATTTTTGA+GGG + chr4_3:66032807-66032826 Msa0656680:CDS 25.0%
! AAATTGTATTTCCTGACATT+TGG + chr4_3:66033002-66033021 Msa0656680:intron 25.0%
! CAACTTTCTAAATTGTTAAC+AGG + chr4_3:66033088-66033107 Msa0656680:intron 25.0%
! GTTAATCACGTTTAAATTTG+TGG - chr4_3:66033203-66033222 None:intergenic 25.0%
! ATTTGAACACTTGAAAATCA+AGG - chr4_3:66033225-66033244 None:intergenic 25.0%
! TGTTCAAATCTACATATAGT+TGG + chr4_3:66033236-66033255 Msa0656680:intron 25.0%
! ATAATATTCGAATTCATGGT+TGG + chr4_3:66033279-66033298 Msa0656680:intron 25.0%
! GAAGCTTGAAAAATTAATGT+TGG + chr4_3:66033623-66033642 Msa0656680:intron 25.0%
! TTCAGAATTTATGACTGTTA+AGG - chr4_3:66033729-66033748 None:intergenic 25.0%
! TAACAGTCATAAATTCTGAA+TGG + chr4_3:66033729-66033748 Msa0656680:CDS 25.0%
! AAATTAATCACAAGCAACAA+AGG + chr4_3:66034160-66034179 Msa0656680:CDS 25.0%
!! ATTCCAACTATGATATCTTT+TGG - chr4_3:66034307-66034326 None:intergenic 25.0%
! ACTTGAAATTCTTCTAGAAG+AGG - chr4_3:66031443-66031462 None:intergenic 30.0%
AACGAAGAAATTAAGAAGTG+GGG - chr4_3:66031525-66031544 None:intergenic 30.0%
!!! TTGGAGGTATTTTTATTGGA+AGG + chr4_3:66031708-66031727 Msa0656680:intron 30.0%
!! AGGAAGCTTTTTAAGCAATT+TGG + chr4_3:66031728-66031747 Msa0656680:intron 30.0%
!! GGAAGCTTTTTAAGCAATTT+GGG + chr4_3:66031729-66031748 Msa0656680:intron 30.0%
ATATAGGCAAACATCAAATC+AGG - chr4_3:66031808-66031827 None:intergenic 30.0%
! CAAACAACTTTGAAAAGAGT+AGG - chr4_3:66031940-66031959 None:intergenic 30.0%
AAGACCATGCTAATATAAAC+CGG - chr4_3:66032318-66032337 None:intergenic 30.0%
AATATTTACTCCAAGAAGCA+TGG - chr4_3:66032364-66032383 None:intergenic 30.0%
! GCTTCTTGGAGTAAATATTT+TGG + chr4_3:66032365-66032384 Msa0656680:intron 30.0%
AAATACTTTATCTTCCCTTG+AGG + chr4_3:66032584-66032603 Msa0656680:CDS 30.0%
AATATAAGTGACTTCAATGC+TGG + chr4_3:66032666-66032685 Msa0656680:CDS 30.0%
GATATACTTCATTTCCAAAG+AGG + chr4_3:66032780-66032799 Msa0656680:CDS 30.0%
GACTTCAAAATTGAAGGTTA+AGG - chr4_3:66032936-66032955 None:intergenic 30.0%
TAAAGGGACTTCAAAATTGA+AGG - chr4_3:66032942-66032961 None:intergenic 30.0%
! GAAGACAGATGTTGATTAAA+GGG - chr4_3:66032958-66032977 None:intergenic 30.0%
CAGCACTTCAAAAAATTTGA+GGG - chr4_3:66032980-66032999 None:intergenic 30.0%
ACAGCACTTCAAAAAATTTG+AGG - chr4_3:66032981-66033000 None:intergenic 30.0%
!! GTTAAAAGAAGCGTTACATT+TGG + chr4_3:66033123-66033142 Msa0656680:intron 30.0%
GTAGTTCAATAAGTAGTTAG+TGG - chr4_3:66033349-66033368 None:intergenic 30.0%
! ATATATGATGGAATCCTAGT+GGG - chr4_3:66033507-66033526 None:intergenic 30.0%
! AATATATGATGGAATCCTAG+TGG - chr4_3:66033508-66033527 None:intergenic 30.0%
! CTTGTGATTAATTTTGAACC+TGG - chr4_3:66034154-66034173 None:intergenic 30.0%
TGCATTATTTAGAGGATTGA+AGG + chr4_3:66034192-66034211 Msa0656680:CDS 30.0%
GCATTATTTAGAGGATTGAA+GGG + chr4_3:66034193-66034212 Msa0656680:CDS 30.0%
ACACCAAAAGATATCATAGT+TGG + chr4_3:66034301-66034320 Msa0656680:CDS 30.0%
AGATATCATAGTTGGAATGA+TGG + chr4_3:66034309-66034328 Msa0656680:CDS 30.0%
GATATCATAGTTGGAATGAT+GGG + chr4_3:66034310-66034329 Msa0656680:CDS 30.0%
CATTTAAGCCTATAACACTT+GGG + chr4_3:66034368-66034387 Msa0656680:CDS 30.0%
TAGGCATAACTCAATACAAA+TGG + chr4_3:66034467-66034486 Msa0656680:three_prime_UTR 30.0%
! GAAGGAATCATAGTTTTCAC+AGG - chr4_3:66031367-66031386 None:intergenic 35.0%
TTGTGAATGAGTGAAGTTGA+AGG - chr4_3:66031385-66031404 None:intergenic 35.0%
TTTGGGAGTAATTTACAAGC+TGG + chr4_3:66031746-66031765 Msa0656680:intron 35.0%
TTGTCAAATCATGGCTGATT+TGG + chr4_3:66031769-66031788 Msa0656680:intron 35.0%
TACTGAGTACATGTTTGGAT+TGG - chr4_3:66032234-66032253 None:intergenic 35.0%
!! CAAAGTACTGAGTACATGTT+TGG - chr4_3:66032239-66032258 None:intergenic 35.0%
CAAACATGTACTCAGTACTT+TGG + chr4_3:66032237-66032256 Msa0656680:intron 35.0%
!! TATTAGCATGGTCTTGTAGA+TGG + chr4_3:66032323-66032342 Msa0656680:intron 35.0%
TTAATCAGTTCCATGCTTCT+TGG + chr4_3:66032351-66032370 Msa0656680:intron 35.0%
TATGTAATCAGTCTCATGTC+TGG + chr4_3:66032437-66032456 Msa0656680:intron 35.0%
ATGAATTATCGACACAAGCA+CGG - chr4_3:66032466-66032485 None:intergenic 35.0%
GTCGATAATTCATAGCTAAC+TGG + chr4_3:66032473-66032492 Msa0656680:intron 35.0%
! GGTATAACTCTGAAAATCTG+TGG - chr4_3:66032505-66032524 None:intergenic 35.0%
TTTGGATTTATCCTCCTCAA+GGG - chr4_3:66032601-66032620 None:intergenic 35.0%
ATTTGGATTTATCCTCCTCA+AGG - chr4_3:66032602-66032621 None:intergenic 35.0%
CTTGACCCTGAATAAAGATT+TGG - chr4_3:66032619-66032638 None:intergenic 35.0%
ATCTTTATTCAGGGTCAAGT+TGG + chr4_3:66032620-66032639 Msa0656680:CDS 35.0%
TTGGTTACCAGCAACTTATA+TGG + chr4_3:66032639-66032658 Msa0656680:CDS 35.0%
ATTTGAGCCATATAAGTTGC+TGG - chr4_3:66032649-66032668 None:intergenic 35.0%
CACTGGTATTCTCTTCAATA+TGG - chr4_3:66032727-66032746 None:intergenic 35.0%
ATTCATCAACAGAACCTCTT+TGG - chr4_3:66032797-66032816 None:intergenic 35.0%
TCCAAAAATTGCAAGACTTG+AGG + chr4_3:66032830-66032849 Msa0656680:CDS 35.0%
! GGAAGACAGATGTTGATTAA+AGG - chr4_3:66032959-66032978 None:intergenic 35.0%
AAATGACATTGATATGCCTC+TGG - chr4_3:66033482-66033501 None:intergenic 35.0%
! TATATGATGGAATCCTAGTG+GGG - chr4_3:66033506-66033525 None:intergenic 35.0%
TTGGGACAGCTAATATATGA+TGG - chr4_3:66033519-66033538 None:intergenic 35.0%
TTGTCACTGCATCAAACATA+AGG + chr4_3:66033593-66033612 Msa0656680:intron 35.0%
ATACTCTTCTTCTTCCTCTA+AGG + chr4_3:66033675-66033694 Msa0656680:intron 35.0%
GTTAGGTCTTAATTCCAACA+TGG - chr4_3:66033852-66033871 None:intergenic 35.0%
!! GATGCTGTGCTGATATTTTT+CGG + chr4_3:66034016-66034035 Msa0656680:CDS 35.0%
TTAATCACAAGCAACAAAGG+AGG + chr4_3:66034163-66034182 Msa0656680:CDS 35.0%
GGAACTGATGCATTATTTAG+AGG + chr4_3:66034184-66034203 Msa0656680:CDS 35.0%
!! TAAGTGTGGCATTGACTTTA+GGG + chr4_3:66034224-66034243 Msa0656680:CDS 35.0%
TTTGTAGTGAAGTATAGCTC+AGG + chr4_3:66034256-66034275 Msa0656680:CDS 35.0%
TCTTGCATGTAAAGTTTCTG+TGG + chr4_3:66034336-66034355 Msa0656680:CDS 35.0%
ATGTAAAGTTTCTGTGGTGT+TGG + chr4_3:66034342-66034361 Msa0656680:CDS 35.0%
GCATTTAAGCCTATAACACT+TGG + chr4_3:66034367-66034386 Msa0656680:CDS 35.0%
CTCTAGTGATACACTATGTT+AGG + chr4_3:66034448-66034467 Msa0656680:exon 35.0%
AAGGTTCAGAGCTATAGCTA+TGG + chr4_3:66031333-66031352 Msa0656680:exon 40.0%
ACAAGCTGGTTGTCAAATCA+TGG + chr4_3:66031760-66031779 Msa0656680:intron 40.0%
! TTGAAAAGATAACGGTGCCA+CGG + chr4_3:66032188-66032207 Msa0656680:intron 40.0%
!! GTTTGGATTGGCAATGTGTT+TGG - chr4_3:66032222-66032241 None:intergenic 40.0%
CATGCTAATATAAACCGGCT+AGG - chr4_3:66032313-66032332 None:intergenic 40.0%
! CTAGCCGGTTTATATTAGCA+TGG + chr4_3:66032311-66032330 Msa0656680:intron 40.0%
TACTTTATCTTCCCTTGAGG+AGG + chr4_3:66032587-66032606 Msa0656680:CDS 40.0%
CATCTACGTCTATCAAGCAT+AGG - chr4_3:66032698-66032717 None:intergenic 40.0%
CTATGCTTGATAGACGTAGA+TGG + chr4_3:66032696-66032715 Msa0656680:CDS 40.0%
ACCGATCATTCTACAGAATC+AGG + chr4_3:66032756-66032775 Msa0656680:CDS 40.0%
CCCTGATTCTGTAGAATGAT+CGG - chr4_3:66032760-66032779 None:intergenic 40.0%
CCGATCATTCTACAGAATCA+GGG + chr4_3:66032757-66032776 Msa0656680:CDS 40.0%
CGATCATTCTACAGAATCAG+GGG + chr4_3:66032758-66032777 Msa0656680:CDS 40.0%
! GCCTCAAGTCTTGCAATTTT+TGG - chr4_3:66032834-66032853 None:intergenic 40.0%
TTGCAAGACTTGAGGCTATT+TGG + chr4_3:66032838-66032857 Msa0656680:CDS 40.0%
TGCAAGACTTGAGGCTATTT+GGG + chr4_3:66032839-66032858 Msa0656680:CDS 40.0%
TGGAATGTGATCCAAATGTC+AGG - chr4_3:66033016-66033035 None:intergenic 40.0%
AGTTGGAACACCTGAAATCA+TGG + chr4_3:66033253-66033272 Msa0656680:intron 40.0%
! GGTTGGTTAAGCTCATTTGA+TGG + chr4_3:66033296-66033315 Msa0656680:intron 40.0%
GTTAGTGGTGAAGACAAGAA+CGG - chr4_3:66033334-66033353 None:intergenic 40.0%
! ATATGATGGAATCCTAGTGG+GGG - chr4_3:66033505-66033524 None:intergenic 40.0%
CCTCAATTCGAAAGTCGTAT+TGG - chr4_3:66033799-66033818 None:intergenic 40.0%
CCAATACGACTTTCGAATTG+AGG + chr4_3:66033796-66033815 Msa0656680:CDS 40.0%
AGGAACTGATCTATCCATGT+TGG + chr4_3:66033835-66033854 Msa0656680:CDS 40.0%
!! CTTTCTTCCTTTGAGATGAC+AGG - chr4_3:66033953-66033972 None:intergenic 40.0%
CATCTCAAAGGAAGAAAGCA+TGG + chr4_3:66033955-66033974 Msa0656680:CDS 40.0%
TGTATCTGCTATTGTTGCAG+AGG + chr4_3:66034113-66034132 Msa0656680:CDS 40.0%
GTCAATGCCACACTTACTAT+AGG - chr4_3:66034220-66034239 None:intergenic 40.0%
!! GTAAGTGTGGCATTGACTTT+AGG + chr4_3:66034223-66034242 Msa0656680:CDS 40.0%
AACTTCTGCCCAAGTGTTAT+AGG - chr4_3:66034379-66034398 None:intergenic 40.0%
!! ATTCGTGCTTTTGGGGAAGA+AGG + chr4_3:66031314-66031333 Msa0656680:five_prime_UTR 45.0%
TTATTGTCAGGCCTAGCAAG+TGG + chr4_3:66031966-66031985 Msa0656680:intron 45.0%
!! TGAAAAGATAACGGTGCCAC+GGG + chr4_3:66032189-66032208 Msa0656680:intron 45.0%
CTCAAAAGCTTGAACCTAGC+CGG + chr4_3:66032296-66032315 Msa0656680:intron 45.0%
TGGCAAAACAACTGATGGTC+TGG - chr4_3:66032526-66032545 None:intergenic 45.0%
TGTGCATACTTTCACGTCAG+AGG - chr4_3:66032550-66032569 None:intergenic 45.0%
TGATCGGTCATCAAACTCAC+TGG - chr4_3:66032744-66032763 None:intergenic 45.0%
AGACTTGAGGCTATTTGGGT+CGG + chr4_3:66032843-66032862 Msa0656680:CDS 45.0%
!! ATTTGGGTCGGTGTTGATTC+AGG + chr4_3:66032855-66032874 Msa0656680:CDS 45.0%
TGACATTGATATGCCTCTGG+TGG - chr4_3:66033479-66033498 None:intergenic 45.0%
! TCAATGTCATTTCCCCCACT+AGG + chr4_3:66033490-66033509 Msa0656680:intron 45.0%
!! CTTCTTCTTCCTCTAAGGTC+AGG + chr4_3:66033680-66033699 Msa0656680:intron 45.0%
!! TTCCTCTAAGGTCAGGTCAA+TGG + chr4_3:66033687-66033706 Msa0656680:intron 45.0%
ACCATCATTGCCAGAAGAAG+AGG + chr4_3:66033754-66033773 Msa0656680:CDS 45.0%
ACCTCTTCTTCTGGCAATGA+TGG - chr4_3:66033758-66033777 None:intergenic 45.0%
TATGGTGGTACCTCTTCTTC+TGG - chr4_3:66033767-66033786 None:intergenic 45.0%
TCGAAAGTCGTATTGGAAGC+CGG - chr4_3:66033792-66033811 None:intergenic 45.0%
CGAATTGAGGATGCATTGCT+TGG + chr4_3:66033809-66033828 Msa0656680:CDS 45.0%
TCAAGCTGAGTCACAAGGTT+AGG - chr4_3:66033869-66033888 None:intergenic 45.0%
AACCTTGTGACTCAGCTTGA+AGG + chr4_3:66033869-66033888 Msa0656680:CDS 45.0%
ACCTTGTGACTCAGCTTGAA+GGG + chr4_3:66033870-66033889 Msa0656680:CDS 45.0%
!! CCTTTGAGATGACAGGAGTT+TGG - chr4_3:66033946-66033965 None:intergenic 45.0%
CCAAACTCCTGTCATCTCAA+AGG + chr4_3:66033943-66033962 Msa0656680:CDS 45.0%
! CTCAAAGGAAGAAAGCATGG+AGG + chr4_3:66033958-66033977 Msa0656680:CDS 45.0%
! GGTATTTTCACCAGCTGAGA+GGG - chr4_3:66034056-66034075 None:intergenic 45.0%
CTCTCAGCTGGTGAAAATAC+CGG + chr4_3:66034055-66034074 Msa0656680:CDS 45.0%
TCTCAGCTGGTGAAAATACC+GGG + chr4_3:66034056-66034075 Msa0656680:CDS 45.0%
ACCAACAAAGAAAGCGAACC+CGG - chr4_3:66034077-66034096 None:intergenic 45.0%
GGTTCGCTTTCTTTGTTGGT+GGG + chr4_3:66034077-66034096 Msa0656680:CDS 45.0%
! GCTTTCTTTGTTGGTGGGAT+TGG + chr4_3:66034082-66034101 Msa0656680:CDS 45.0%
! TTCTTTGTTGGTGGGATTGG+AGG + chr4_3:66034085-66034104 Msa0656680:CDS 45.0%
! GCTATTGTTGCAGAGGTATG+TGG + chr4_3:66034120-66034139 Msa0656680:CDS 45.0%
! TTGTTGCAGAGGTATGTGGA+CGG + chr4_3:66034124-66034143 Msa0656680:CDS 45.0%
GAAGGGTCCTATAGTAAGTG+TGG + chr4_3:66034210-66034229 Msa0656680:CDS 45.0%
AACACTTGGGCAGAAGTTAC+TGG + chr4_3:66034381-66034400 Msa0656680:CDS 45.0%
!! AAATATAAATAATATATGTT+GGG - chr4_3:66033537-66033556 None:intergenic 5.0%
!! AAAATATAAATAATATATGT+TGG - chr4_3:66033538-66033557 None:intergenic 5.0%
!! GAAAAGATAACGGTGCCACG+GGG + chr4_3:66032190-66032209 Msa0656680:intron 50.0%
GAGGCTGGCAAAACAACTGA+TGG - chr4_3:66032531-66032550 None:intergenic 50.0%
CATACTTTCACGTCAGAGGC+TGG - chr4_3:66032546-66032565 None:intergenic 50.0%
GCATTGTGCAATTCCACCAG+AGG + chr4_3:66033463-66033482 Msa0656680:intron 50.0%
CTCCATTGACCTGACCTTAG+AGG - chr4_3:66033692-66033711 None:intergenic 50.0%
AGGTCAGGTCAATGGAGACT+AGG + chr4_3:66033695-66033714 Msa0656680:intron 50.0%
!! GAAGAGGTACCACCATACAC+CGG + chr4_3:66033770-66033789 Msa0656680:CDS 50.0%
TATTGGAAGCCGGTGTATGG+TGG - chr4_3:66033782-66033801 None:intergenic 50.0%
TCGTATTGGAAGCCGGTGTA+TGG - chr4_3:66033785-66033804 None:intergenic 50.0%
! GAGGATGCATTGCTTGGTGA+AGG + chr4_3:66033815-66033834 Msa0656680:CDS 50.0%
TCCCTTCAAGCTGAGTCACA+AGG - chr4_3:66033874-66033893 None:intergenic 50.0%
TGTGACTCAGCTTGAAGGGA+CGG + chr4_3:66033874-66033893 Msa0656680:CDS 50.0%
TCAATTGCTTCCCTCTCAGC+TGG + chr4_3:66034043-66034062 Msa0656680:CDS 50.0%
! CGGTATTTTCACCAGCTGAG+AGG - chr4_3:66034057-66034076 None:intergenic 50.0%
ACCGGGTTCGCTTTCTTTGT+TGG + chr4_3:66034073-66034092 Msa0656680:CDS 50.0%
GGGTTCGCTTTCTTTGTTGG+TGG + chr4_3:66034076-66034095 Msa0656680:CDS 50.0%
TGTGTTTGGCGAAATCCCCG+TGG - chr4_3:66032208-66032227 None:intergenic 55.0%
!! AGGTATGTGGACGGATTGCC+AGG + chr4_3:66034133-66034152 Msa0656680:CDS 55.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 66031313 66034551 66031313 ID=Msa0656680;Name=Msa0656680
chr4_3 mRNA 66031313 66034551 66031313 ID=Msa0656680-mRNA-1;Parent=Msa0656680;Name=Msa0656680-mRNA-1;_AED=0.06;_eAED=0.06;_QI=39|1|1|1|1|1|3|98|428
chr4_3 exon 66031313 66031517 66031313 ID=Msa0656680-mRNA-1:exon:18863;Parent=Msa0656680-mRNA-1
chr4_3 exon 66032508 66032876 66032508 ID=Msa0656680-mRNA-1:exon:18864;Parent=Msa0656680-mRNA-1
chr4_3 exon 66033702 66034551 66033702 ID=Msa0656680-mRNA-1:exon:18865;Parent=Msa0656680-mRNA-1
chr4_3 five_prime_UTR 66031313 66031351 66031313 ID=Msa0656680-mRNA-1:five_prime_utr;Parent=Msa0656680-mRNA-1
chr4_3 CDS 66031352 66031517 66031352 ID=Msa0656680-mRNA-1:cds;Parent=Msa0656680-mRNA-1
chr4_3 CDS 66032508 66032876 66032508 ID=Msa0656680-mRNA-1:cds;Parent=Msa0656680-mRNA-1
chr4_3 CDS 66033702 66034453 66033702 ID=Msa0656680-mRNA-1:cds;Parent=Msa0656680-mRNA-1
chr4_3 three_prime_UTR 66034454 66034551 66034454 ID=Msa0656680-mRNA-1:three_prime_utr;Parent=Msa0656680-mRNA-1
Gene Sequence

>Msa0656680

ATGGAGACAATTCCTGTGAAAACTATGATTCCTTCAACTTCACTCATTCACAATCATGCTTTCAAAAGAAAATCAACAACACACACAACCTCTTCTAGAAGAATTTCAAGTTCAAGACATGTACGCTTTTCTATTCGTGCCAAATTCTCTGATACTAATTTTCAAGATTTTCAGAGTTATACCAGACCATCAGTTGTTTTGCCAGCCTCTGACGTGAAAGTATGCACAGATACATCATTAGAAAATACTTTATCTTCCCTTGAGGAGGATAAATCCAAATCTTTATTCAGGGTCAAGTTGGTTACCAGCAACTTATATGGCTCAAATATAAGTGACTTCAATGCTGGAATTCTCCTATGCTTGATAGACGTAGATGGAAATTCCATATTGAAGAGAATACCAGTGAGTTTGATGACCGATCATTCTACAGAATCAGGGGATATACTTCATTTCCAAAGAGGTTCTGTTGATGAATTCATTTTTGAGGGTCCAAAAATTGCAAGACTTGAGGCTATTTGGGTCGGTGTTGATTCAGGTCAATGGAGACTAGGAAATATCTCCTTAACAGTCATAAATTCTGAATGGCAACCATCATTGCCAGAAGAAGAGGTACCACCATACACCGGCTTCCAATACGACTTTCGAATTGAGGATGCATTGCTTGGTGAAGGAACTGATCTATCCATGTTGGAATTAAGACCTAACCTTGTGACTCAGCTTGAAGGGACGGATCCTATAAGTTTGTTCAAAAAAGAACTTTATGACAGTACATTGCTCCAAACTCCTGTCATCTCAAAGGAAGAAAGCATGGAGGAATACACAAATTTGAAATTCTCATTGCTATTTTATGATGCTGTGCTGATATTTTTCGGCACATCAATTGCTTCCCTCTCAGCTGGTGAAAATACCGGGTTCGCTTTCTTTGTTGGTGGGATTGGAGGCTTCTTGTATCTGCTATTGTTGCAGAGGTATGTGGACGGATTGCCAGGTTCAAAATTAATCACAAGCAACAAAGGAGGAACTGATGCATTATTTAGAGGATTGAAGGGTCCTATAGTAAGTGTGGCATTGACTTTAGGGTTTGCTGTATTTGTAGTGAAGTATAGCTCAGGAGATGATTTTGAAGTGTTCTTAACACCAAAAGATATCATAGTTGGAATGATGGGATTTCTTGCATGTAAAGTTTCTGTGGTGTTGGCTGCATTTAAGCCTATAACACTTGGGCAGAAGTTACTGGTGACATGTAATTATACACTTTTATACAAGAAACATTACACACAACTCTAG

Protein sequence

>Msa0656680

METIPVKTMIPSTSLIHNHAFKRKSTTHTTSSRRISSSRHVRFSIRAKFSDTNFQDFQSYTRPSVVLPASDVKVCTDTSLENTLSSLEEDKSKSLFRVKLVTSNLYGSNISDFNAGILLCLIDVDGNSILKRIPVSLMTDHSTESGDILHFQRGSVDEFIFEGPKIARLEAIWVGVDSGQWRLGNISLTVINSEWQPSLPEEEVPPYTGFQYDFRIEDALLGEGTDLSMLELRPNLVTQLEGTDPISLFKKELYDSTLLQTPVISKEESMEEYTNLKFSLLFYDAVLIFFGTSIASLSAGENTGFAFFVGGIGGFLYLLLLQRYVDGLPGSKLITSNKGGTDALFRGLKGPIVSVALTLGFAVFVVKYSSGDDFEVFLTPKDIIVGMMGFLACKVSVVLAAFKPITLGQKLLVTCNYTLLYKKHYTQL*