Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396090 | XP_003603454.2 | 99.048 | 105 | 1 | 0 | 1 | 105 | 88 | 192 | 2.17e-70 | 218 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396090 | G7JBN9 | 99.048 | 105 | 1 | 0 | 1 | 105 | 88 | 192 | 1.04e-70 | 218 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008850 | Msa1396090 | 0.830546 | 2.763282e-55 | -8.615850e-47 |
| Msa0011720 | Msa1396090 | 0.833206 | 6.091560e-56 | -8.615850e-47 |
| Msa0021980 | Msa1396090 | 0.800090 | 1.696820e-48 | -8.615850e-47 |
| Msa0047470 | Msa1396090 | 0.835357 | 1.758475e-56 | -8.615850e-47 |
| Msa0060600 | Msa1396090 | 0.845318 | 4.376184e-59 | -8.615850e-47 |
| Msa0083160 | Msa1396090 | 0.825981 | 3.484904e-54 | -8.615850e-47 |
| Msa0087110 | Msa1396090 | 0.812589 | 3.929186e-51 | -8.615850e-47 |
| Msa0100250 | Msa1396090 | 0.807226 | 5.604756e-50 | -8.615850e-47 |
| Msa0105340 | Msa1396090 | 0.848814 | 4.821165e-60 | -8.615850e-47 |
| Msa1347620 | Msa1396090 | 0.848202 | 7.124064e-60 | -8.615850e-47 |
| Msa1370650 | Msa1396090 | 0.808292 | 3.327664e-50 | -8.615850e-47 |
| Msa1371360 | Msa1396090 | 0.855025 | 8.318358e-62 | -8.615850e-47 |
| Msa1382720 | Msa1396090 | 0.816315 | 5.893291e-52 | -8.615850e-47 |
| Msa1386520 | Msa1396090 | 0.817649 | 2.955859e-52 | -8.615850e-47 |
| Msa1387090 | Msa1396090 | 0.805544 | 1.268328e-49 | -8.615850e-47 |
| Msa1396090 | Msa1415270 | 0.804523 | 2.073977e-49 | -8.615850e-47 |
| Msa1396090 | Msa1415560 | 0.897117 | 1.917473e-76 | -8.615850e-47 |
| Msa1396090 | Msa1428440 | 0.851717 | 7.398102e-61 | -8.615850e-47 |
| Msa1396090 | Msa1428560 | 0.853955 | 1.697246e-61 | -8.615850e-47 |
| Msa1396090 | Msa1435470 | 0.812413 | 4.293806e-51 | -8.615850e-47 |
| Msa1396090 | Msa1440180 | 0.836920 | 7.049937e-57 | -8.615850e-47 |
| Msa1396090 | Msa1442290 | 0.801112 | 1.050130e-48 | -8.615850e-47 |
| Msa1396090 | Msa1447560 | 0.811059 | 8.461018e-51 | -8.615850e-47 |
| Msa1396090 | Msa1449740 | 0.838973 | 2.091135e-57 | -8.615850e-47 |
| Msa1396090 | Msa1454850 | 0.824049 | 9.963303e-54 | -8.615850e-47 |
| Msa1396090 | Msa1456810 | 0.812282 | 4.586123e-51 | -8.615850e-47 |
| Msa1396090 | Msa1457670 | -0.813386 | 2.627468e-51 | -8.615850e-47 |
| Msa1396090 | Msa1458920 | 0.821684 | 3.543082e-53 | -8.615850e-47 |
| Msa1396090 | Msa1464560 | 0.811061 | 8.451698e-51 | -8.615850e-47 |
| Msa0605230 | Msa1396090 | 0.830568 | 2.729692e-55 | -8.615850e-47 |
| Msa0606060 | Msa1396090 | 0.805692 | 1.180652e-49 | -8.615850e-47 |
| Msa0610590 | Msa1396090 | 0.808804 | 2.586423e-50 | -8.615850e-47 |
| Msa0616910 | Msa1396090 | 0.876672 | 1.159340e-68 | -8.615850e-47 |
| Msa0617370 | Msa1396090 | 0.819883 | 9.189987e-53 | -8.615850e-47 |
| Msa0617830 | Msa1396090 | 0.856945 | 2.282520e-62 | -8.615850e-47 |
| Msa0624730 | Msa1396090 | 0.804191 | 2.431871e-49 | -8.615850e-47 |
| Msa0626230 | Msa1396090 | 0.833402 | 5.445774e-56 | -8.615850e-47 |
| Msa0630960 | Msa1396090 | 0.848164 | 7.294725e-60 | -8.615850e-47 |
| Msa0630970 | Msa1396090 | 0.807601 | 4.667372e-50 | -8.615850e-47 |
| Msa0639030 | Msa1396090 | 0.816068 | 6.691268e-52 | -8.615850e-47 |
| Msa0640380 | Msa1396090 | 0.823198 | 1.575731e-53 | -8.615850e-47 |
| Msa0646390 | Msa1396090 | 0.811546 | 6.632054e-51 | -8.615850e-47 |
| Msa0651190 | Msa1396090 | 0.808051 | 3.744420e-50 | -8.615850e-47 |
| Msa0651400 | Msa1396090 | 0.802547 | 5.326529e-49 | -8.615850e-47 |
| Msa0651790 | Msa1396090 | 0.822188 | 2.707735e-53 | -8.615850e-47 |
| Msa0654060 | Msa1396090 | 0.810577 | 1.075807e-50 | -8.615850e-47 |
| Msa0656270 | Msa1396090 | 0.855742 | 5.143566e-62 | -8.615850e-47 |
| Msa0656680 | Msa1396090 | 0.865552 | 5.437012e-65 | -8.615850e-47 |
| Msa0661890 | Msa1396090 | 0.817096 | 3.936741e-52 | -8.615850e-47 |
| Msa0669200 | Msa1396090 | 0.816899 | 4.358873e-52 | -8.615850e-47 |
| Msa0678820 | Msa1396090 | 0.807396 | 5.159003e-50 | -8.615850e-47 |
| Msa0686610 | Msa1396090 | 0.806054 | 9.910122e-50 | -8.615850e-47 |
| Msa0694250 | Msa1396090 | 0.807540 | 4.809975e-50 | -8.615850e-47 |
| Msa0697140 | Msa1396090 | 0.836148 | 1.108857e-56 | -8.615850e-47 |
| Msa0697600 | Msa1396090 | 0.817385 | 3.389294e-52 | -8.615850e-47 |
| Msa0700070 | Msa1396090 | 0.861871 | 7.564304e-64 | -8.615850e-47 |
| Msa0714340 | Msa1396090 | 0.873679 | 1.219723e-67 | -8.615850e-47 |
| Msa0714380 | Msa1396090 | 0.877029 | 8.717150e-69 | -8.615850e-47 |
| Msa0714600 | Msa1396090 | 0.837278 | 5.711147e-57 | -8.615850e-47 |
| Msa0722930 | Msa1396090 | 0.861480 | 9.961707e-64 | -8.615850e-47 |
| Msa0723140 | Msa1396090 | 0.869848 | 2.276701e-66 | -8.615850e-47 |
| Msa0724050 | Msa1396090 | 0.857756 | 1.314286e-62 | -8.615850e-47 |
| Msa0726610 | Msa1396090 | 0.821067 | 4.915427e-53 | -8.615850e-47 |
| Msa0739610 | Msa1396090 | 0.803102 | 4.090825e-49 | -8.615850e-47 |
| Msa0743640 | Msa1396090 | 0.825486 | 4.565348e-54 | -8.615850e-47 |
| Msa0745460 | Msa1396090 | -0.812850 | 3.445434e-51 | -8.615850e-47 |
| Msa0750380 | Msa1396090 | 0.815372 | 9.560300e-52 | -8.615850e-47 |
| Msa0756310 | Msa1396090 | 0.849311 | 3.508025e-60 | -8.615850e-47 |
| Msa0756800 | Msa1396090 | -0.847914 | 8.551505e-60 | -8.615850e-47 |
| Msa0763880 | Msa1396090 | 0.861535 | 9.581137e-64 | -8.615850e-47 |
| Msa0763910 | Msa1396090 | 0.844339 | 8.039358e-59 | -8.615850e-47 |
| Msa0775260 | Msa1396090 | 0.823412 | 1.404965e-53 | -8.615850e-47 |
| Msa0787720 | Msa1396090 | 0.801408 | 9.134293e-49 | -8.615850e-47 |
| Msa0789270 | Msa1396090 | 0.814170 | 1.765548e-51 | -8.615850e-47 |
| Msa0789280 | Msa1396090 | 0.812909 | 3.343267e-51 | -8.615850e-47 |
| Msa0789290 | Msa1396090 | 0.814393 | 1.576262e-51 | -8.615850e-47 |
| Msa0789300 | Msa1396090 | 0.817547 | 3.116604e-52 | -8.615850e-47 |
| Msa0796460 | Msa1396090 | 0.802513 | 5.412953e-49 | -8.615850e-47 |
| Msa0807050 | Msa1396090 | 0.833252 | 5.934906e-56 | -8.615850e-47 |
| Msa0824770 | Msa1396090 | 0.807927 | 3.978665e-50 | -8.615850e-47 |
| Msa0830720 | Msa1396090 | 0.816265 | 6.045416e-52 | -8.615850e-47 |
| Msa0832990 | Msa1396090 | 0.836164 | 1.098868e-56 | -8.615850e-47 |
| Msa0835730 | Msa1396090 | 0.834973 | 2.198151e-56 | -8.615850e-47 |
| Msa0151690 | Msa1396090 | 0.828458 | 8.892955e-55 | -8.615850e-47 |
| Msa0164360 | Msa1396090 | 0.829206 | 5.859363e-55 | -8.615850e-47 |
| Msa0175530 | Msa1396090 | 0.835058 | 2.093091e-56 | -8.615850e-47 |
| Msa0188500 | Msa1396090 | 0.801906 | 7.217024e-49 | -8.615850e-47 |
| Msa0200840 | Msa1396090 | 0.815401 | 9.421730e-52 | -8.615850e-47 |
| Msa0200870 | Msa1396090 | 0.830771 | 2.433971e-55 | -8.615850e-47 |
| Msa0203180 | Msa1396090 | 0.804218 | 2.400728e-49 | -8.615850e-47 |
| Msa1238490 | Msa1396090 | 0.815028 | 1.140216e-51 | -8.615850e-47 |
| Msa1244830 | Msa1396090 | 0.828072 | 1.101829e-54 | -8.615850e-47 |
| Msa1252070 | Msa1396090 | 0.867670 | 1.152977e-65 | -8.615850e-47 |
| Msa1259010 | Msa1396090 | 0.807083 | 6.011403e-50 | -8.615850e-47 |
| Msa1287160 | Msa1396090 | 0.817173 | 3.783729e-52 | -8.615850e-47 |
| Msa1287340 | Msa1396090 | 0.811434 | 7.015185e-51 | -8.615850e-47 |
| Msa1292730 | Msa1396090 | 0.914189 | 2.564952e-84 | -8.615850e-47 |
| Msa1297750 | Msa1396090 | 0.810705 | 1.009330e-50 | -8.615850e-47 |
| Msa1303720 | Msa1396090 | 0.809330 | 1.996306e-50 | -8.615850e-47 |
| Msa1303780 | Msa1396090 | 0.810091 | 1.369323e-50 | -8.615850e-47 |
| Msa1305750 | Msa1396090 | 0.807979 | 3.878498e-50 | -8.615850e-47 |
| Msa1306700 | Msa1396090 | 0.825074 | 5.715020e-54 | -8.615850e-47 |
| Msa1322420 | Msa1396090 | 0.804853 | 1.769459e-49 | -8.615850e-47 |
| Msa1335720 | Msa1396090 | 0.827340 | 1.651615e-54 | -8.615850e-47 |
| Msa1343340 | Msa1396090 | 0.831506 | 1.605943e-55 | -8.615850e-47 |
| Msa0378340 | Msa1396090 | 0.825327 | 4.979321e-54 | -8.615850e-47 |
| Msa0411000 | Msa1396090 | 0.838749 | 2.389904e-57 | -8.615850e-47 |
| Msa0419620 | Msa1396090 | -0.803095 | 4.104763e-49 | -8.615850e-47 |
| Msa0427050 | Msa1396090 | 0.812993 | 3.204662e-51 | -8.615850e-47 |
| Msa0427690 | Msa1396090 | 0.825665 | 4.142123e-54 | -8.615850e-47 |
| Msa0431520 | Msa1396090 | 0.800548 | 1.368546e-48 | -8.615850e-47 |
| Msa0448400 | Msa1396090 | 0.810963 | 8.874805e-51 | -8.615850e-47 |
| Msa0449760 | Msa1396090 | 0.807631 | 4.600686e-50 | -8.615850e-47 |
| Msa0455230 | Msa1396090 | 0.840838 | 6.830884e-58 | -8.615850e-47 |
| Msa0988500 | Msa1396090 | 0.823468 | 1.362703e-53 | -8.615850e-47 |
| Msa1024580 | Msa1396090 | 0.801531 | 8.617382e-49 | -8.615850e-47 |
| Msa1043870 | Msa1396090 | 0.831160 | 1.953313e-55 | -8.615850e-47 |
| Msa1056640 | Msa1396090 | 0.805034 | 1.622322e-49 | -8.615850e-47 |
| Msa1072350 | Msa1396090 | 0.821014 | 5.056375e-53 | -8.615850e-47 |
| Msa1080770 | Msa1396090 | 0.821908 | 3.144194e-53 | -8.615850e-47 |
| Msa1080790 | Msa1396090 | 0.818681 | 1.726535e-52 | -8.615850e-47 |
| Msa1089530 | Msa1396090 | 0.804277 | 2.333717e-49 | -8.615850e-47 |
| Msa1102180 | Msa1396090 | 0.836579 | 8.616265e-57 | -8.615850e-47 |
| Msa1102540 | Msa1396090 | 0.816256 | 6.074566e-52 | -8.615850e-47 |
| Msa0240780 | Msa1396090 | 0.808101 | 3.654110e-50 | -8.615850e-47 |
| Msa0243470 | Msa1396090 | 0.853853 | 1.816159e-61 | -8.615850e-47 |
| Msa0243620 | Msa1396090 | 0.814265 | 1.682099e-51 | -8.615850e-47 |
| Msa0243820 | Msa1396090 | 0.858341 | 8.803089e-63 | -8.615850e-47 |
| Msa0252180 | Msa1396090 | 0.821920 | 3.123597e-53 | -8.615850e-47 |
| Msa0281940 | Msa1396090 | 0.845906 | 3.032600e-59 | -8.615850e-47 |
| Msa0282200 | Msa1396090 | 0.804309 | 2.297685e-49 | -8.615850e-47 |
| Msa0282500 | Msa1396090 | 0.892883 | 1.052089e-74 | -8.615850e-47 |
| Msa0284870 | Msa1396090 | 0.839676 | 1.374006e-57 | -8.615850e-47 |
| Msa0323630 | Msa1396090 | 0.833973 | 3.921156e-56 | -8.615850e-47 |
| Msa0343030 | Msa1396090 | -0.842302 | 2.809380e-58 | -8.615850e-47 |
| Msa0358730 | Msa1396090 | 0.824782 | 6.698473e-54 | -8.615850e-47 |
| Msa0363460 | Msa1396090 | 0.840502 | 8.366609e-58 | -8.615850e-47 |
| Msa1118930 | Msa1396090 | 0.817026 | 4.081754e-52 | -8.615850e-47 |
| Msa1123340 | Msa1396090 | 0.810034 | 1.408618e-50 | -8.615850e-47 |
| Msa1132950 | Msa1396090 | 0.833711 | 4.557450e-56 | -8.615850e-47 |
| Msa1141250 | Msa1396090 | -0.810636 | 1.044742e-50 | -8.615850e-47 |
| Msa1152280 | Msa1396090 | 0.812269 | 4.615245e-51 | -8.615850e-47 |
| Msa1198450 | Msa1396090 | 0.885301 | 9.147407e-72 | -8.615850e-47 |
| Msa1208810 | Msa1396090 | 0.833379 | 5.517118e-56 | -8.615850e-47 |
| Msa1217810 | Msa1396090 | 0.815261 | 1.011960e-51 | -8.615850e-47 |
| Msa0498230 | Msa1396090 | 0.827456 | 1.549263e-54 | -8.615850e-47 |
| Msa0511720 | Msa1396090 | -0.807511 | 4.877769e-50 | -8.615850e-47 |
| Msa0516310 | Msa1396090 | 0.840793 | 7.018521e-58 | -8.615850e-47 |
| Msa0518520 | Msa1396090 | 0.824837 | 6.499911e-54 | -8.615850e-47 |
| Msa0534420 | Msa1396090 | 0.828162 | 1.047649e-54 | -8.615850e-47 |
| Msa0543900 | Msa1396090 | 0.825888 | 3.666794e-54 | -8.615850e-47 |
| Msa0549740 | Msa1396090 | 0.835543 | 1.578825e-56 | -8.615850e-47 |
| Msa0576600 | Msa1396090 | 0.862440 | 5.059020e-64 | -8.615850e-47 |
| Msa0577230 | Msa1396090 | 0.815218 | 1.034921e-51 | -8.615850e-47 |
| Msa0578970 | Msa1396090 | 0.810728 | 9.979999e-51 | -8.615850e-47 |
| Msa0582110 | Msa1396090 | 0.813624 | 2.329130e-51 | -8.615850e-47 |
| Msa0590660 | Msa1396090 | 0.824766 | 6.755088e-54 | -8.615850e-47 |
| Msa0596100 | Msa1396090 | 0.804148 | 2.482290e-49 | -8.615850e-47 |
| Msa0599770 | Msa1396090 | 0.810549 | 1.090570e-50 | -8.615850e-47 |
| Msa0843280 | Msa1396090 | 0.852033 | 6.020769e-61 | -8.615850e-47 |
| Msa0844100 | Msa1396090 | 0.828243 | 1.001948e-54 | -8.615850e-47 |
| Msa0853170 | Msa1396090 | 0.836307 | 1.010317e-56 | -8.615850e-47 |
| Msa0863760 | Msa1396090 | 0.827242 | 1.742848e-54 | -8.615850e-47 |
| Msa0865940 | Msa1396090 | -0.826791 | 2.235028e-54 | -8.615850e-47 |
| Msa0887070 | Msa1396090 | 0.821828 | 3.280186e-53 | -8.615850e-47 |
| Msa0899700 | Msa1396090 | 0.804933 | 1.702684e-49 | -8.615850e-47 |
| Msa0903730 | Msa1396090 | 0.805579 | 1.247289e-49 | -8.615850e-47 |
| Msa0934830 | Msa1396090 | 0.834905 | 2.286607e-56 | -8.615850e-47 |
| Msa0951720 | Msa1396090 | 0.822860 | 1.889319e-53 | -8.615850e-47 |
| Msa0964680 | Msa1396090 | 0.831677 | 1.457386e-55 | -8.615850e-47 |
| Msa0971860 | Msa1396090 | 0.833793 | 4.347710e-56 | -8.615850e-47 |
| Msa0978000 | Msa1396090 | 0.811462 | 6.916116e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396090 | MtrunA17_Chr3g0138241 | 99.048 | 105 | 1 | 0 | 1 | 105 | 88 | 192 | 2.00e-74 | 218 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396090 | AT2G25605.1 | 84.762 | 105 | 16 | 0 | 1 | 105 | 96 | 200 | 2.85e-65 | 196 |
Find 41 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGAAAGGTCAACCTATTT+TGG | 0.145914 | tig0021994:+38 | Msa1396090:CDS |
| TCATTATGTGTAAATAAATT+AGG | 0.156875 | tig0021994:+1746 | Msa1396090:three_prime_UTR |
| TTCTACTTACCGAGTCTTAT+TGG | 0.178762 | tig0021994:+531 | Msa1396090:CDS |
| GTGGTTGCTGGGATGGTTAT+TGG | 0.225394 | tig0021994:+1541 | Msa1396090:CDS |
| TGGCGACTCCTGCAACATTT+TGG | 0.246997 | tig0021994:-1818 | Msa1396090:intergenic |
| ACAAATATAAGCAGCGGATT+TGG | 0.255858 | tig0021994:+718 | Msa1396090:CDS |
| TAGCATATCACTTTATGTTT+TGG | 0.273380 | tig0021994:-1662 | Msa1396090:intergenic |
| CATTATGTGTAAATAAATTA+GGG | 0.314300 | tig0021994:+1747 | Msa1396090:three_prime_UTR |
| ATCAAAGAATGGGCCAAAAT+AGG | 0.335461 | tig0021994:-51 | Msa1396090:intergenic |
| CAAATATAAGCAGCGGATTT+GGG | 0.340325 | tig0021994:+719 | Msa1396090:CDS |
| TCTACTTACCGAGTCTTATT+GGG | 0.340415 | tig0021994:+532 | Msa1396090:CDS |
| ATTTCAATTTACAATGGTTC+AGG | 0.356398 | tig0021994:+773 | Msa1396090:CDS |
| CGGGTTGGTGGTTGCTGGGA+TGG | 0.367466 | tig0021994:+1534 | Msa1396090:CDS |
| AAATAAATTAGGGCTATAAT+TGG | 0.403674 | tig0021994:+1757 | Msa1396090:three_prime_UTR |
| GCAGCGGGTTGGTGGTTGCT+GGG | 0.409646 | tig0021994:+1530 | Msa1396090:intron |
| GATCATGAGCAGTTTATTTG+TGG | 0.421084 | tig0021994:+570 | Msa1396090:CDS |
| CCCATTCTTTGATCTCGGTC+AGG | 0.431850 | tig0021994:+61 | Msa1396090:CDS |
| AAATAGGTTGACCTTTCAAA+AGG | 0.471757 | tig0021994:-35 | Msa1396090:intergenic |
| TTTGGCCCATTCTTTGATCT+CGG | 0.472760 | tig0021994:+56 | Msa1396090:CDS |
| TGAAATATCTCCTCTTCCTC+TGG | 0.475702 | tig0021994:-756 | Msa1396090:intergenic |
| AGGAAGTCGACCAGAGGAAG+AGG | 0.484758 | tig0021994:+746 | Msa1396090:CDS |
| AGAGTCTCTGCTTCATGACT+TGG | 0.485170 | tig0021994:+1569 | Msa1396090:CDS |
| CTCTTCTTATGCAGTTTGAA+AGG | 0.490282 | tig0021994:+488 | Msa1396090:intron |
| GAGCAGTTTATTTGTGGAGG+AGG | 0.507190 | tig0021994:+576 | Msa1396090:CDS |
| TGTTATTGGCAGCGGGTTGG+TGG | 0.527157 | tig0021994:+1522 | Msa1396090:intron |
| CATGAGCAGTTTATTTGTGG+AGG | 0.534205 | tig0021994:+573 | Msa1396090:CDS |
| ATAAGACTCGGTAAGTAGAA+TGG | 0.541848 | tig0021994:-528 | Msa1396090:intergenic |
| AAGCAGCGGATTTGGGTTCG+AGG | 0.544388 | tig0021994:+726 | Msa1396090:CDS |
| CCGAGTCTTATTGGGTCACA+AGG | 0.548125 | tig0021994:+540 | Msa1396090:CDS |
| CCTTGTGACCCAATAAGACT+CGG | 0.556779 | tig0021994:-540 | Msa1396090:intergenic |
| CCTGACCGAGATCAAAGAAT+GGG | 0.560157 | tig0021994:-61 | Msa1396090:intergenic |
| CAAGATAGAATAAAATGAAG+AGG | 0.564788 | tig0021994:+1878 | Msa1396090:three_prime_UTR |
| ACCTGACCGAGATCAAAGAA+TGG | 0.564894 | tig0021994:-62 | Msa1396090:intergenic |
| TGTTGTTATTGGCAGCGGGT+TGG | 0.567299 | tig0021994:+1519 | Msa1396090:intron |
| GTCAGTTTCATGAAGCTCCA+TGG | 0.579376 | tig0021994:+1639 | Msa1396090:three_prime_UTR |
| ATGCGCAGGACTGTTTACAT+TGG | 0.590226 | tig0021994:-1791 | Msa1396090:intergenic |
| GGAGATATTTCAATTTACAA+TGG | 0.592072 | tig0021994:+767 | Msa1396090:CDS |
| GAGTATAAGCGTGAAACACA+TGG | 0.624993 | tig0021994:-1838 | Msa1396090:intergenic |
| AACAGAACAAATATAAGCAG+CGG | 0.625934 | tig0021994:+712 | Msa1396090:intron |
| CTGTTTACATTGGATCAGCA+AGG | 0.644416 | tig0021994:-1781 | Msa1396090:intergenic |
| GGTTCGAGGAAGTCGACCAG+AGG | 0.647129 | tig0021994:+740 | Msa1396090:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATATTCTTTTTCATTTT+TGG | + | tig0021994:662-681 | Msa1396090:intron | 10.0% |
| !! | TTATGAATTATTAAAGAAAT+TGG | - | tig0021994:1064-1083 | Msa1396090:intergenic | 10.0% |
| !! | TAGATATATAAACTATTTAT+TGG | - | tig0021994:1101-1120 | Msa1396090:intergenic | 10.0% |
| !!! | TTAATATTCTTTTTCATTTT+TGG | + | tig0021994:662-681 | Msa1396090:intron | 10.0% |
| !! | TTATGAATTATTAAAGAAAT+TGG | - | tig0021994:1064-1083 | Msa1396090:intergenic | 10.0% |
| !! | TAGATATATAAACTATTTAT+TGG | - | tig0021994:1101-1120 | Msa1396090:intergenic | 10.0% |
| !! | TGTTATATTATCATAATCAT+TGG | + | tig0021994:862-881 | Msa1396090:intron | 15.0% |
| !! | GTTATATTATCATAATCATT+GGG | + | tig0021994:863-882 | Msa1396090:intron | 15.0% |
| !! | TATATAAACTATTTATTGGA+TGG | - | tig0021994:1097-1116 | Msa1396090:intergenic | 15.0% |
| !! | TTTATATATCTAAATCCTTT+GGG | + | tig0021994:1109-1128 | Msa1396090:intron | 15.0% |
| !!! | TCTTTTTCTAAAATTATCAT+CGG | - | tig0021994:1202-1221 | Msa1396090:intergenic | 15.0% |
| !! | TCATTATGTGTAAATAAATT+AGG | + | tig0021994:1746-1765 | Msa1396090:three_prime_UTR | 15.0% |
| !! | CATTATGTGTAAATAAATTA+GGG | + | tig0021994:1747-1766 | Msa1396090:three_prime_UTR | 15.0% |
| !! | TGTTATATTATCATAATCAT+TGG | + | tig0021994:862-881 | Msa1396090:intron | 15.0% |
| !! | GTTATATTATCATAATCATT+GGG | + | tig0021994:863-882 | Msa1396090:intron | 15.0% |
| !! | TATATAAACTATTTATTGGA+TGG | - | tig0021994:1097-1116 | Msa1396090:intergenic | 15.0% |
| !! | TTTATATATCTAAATCCTTT+GGG | + | tig0021994:1109-1128 | Msa1396090:intron | 15.0% |
| !!! | TCTTTTTCTAAAATTATCAT+CGG | - | tig0021994:1202-1221 | Msa1396090:intergenic | 15.0% |
| !! | TCATTATGTGTAAATAAATT+AGG | + | tig0021994:1746-1765 | Msa1396090:three_prime_UTR | 15.0% |
| !! | CATTATGTGTAAATAAATTA+GGG | + | tig0021994:1747-1766 | Msa1396090:three_prime_UTR | 15.0% |
| !! | TAGTTTATAGCATATGTTTA+TGG | + | tig0021994:447-466 | Msa1396090:intron | 20.0% |
| !! | TTATTAAAGAAATTGGTAGA+AGG | - | tig0021994:1057-1076 | Msa1396090:intergenic | 20.0% |
| !! | GTTTATATATCTAAATCCTT+TGG | + | tig0021994:1108-1127 | Msa1396090:intron | 20.0% |
| !! | TATCAATAATTCATAGGAAT+AGG | - | tig0021994:1135-1154 | Msa1396090:intergenic | 20.0% |
| !!! | TGAAAGTATCAATAATTCAT+AGG | - | tig0021994:1141-1160 | Msa1396090:intergenic | 20.0% |
| !!! | TTTTGCATGATTTTGAATTT+TGG | + | tig0021994:1347-1366 | Msa1396090:intron | 20.0% |
| !! | CGATAAATCAAAGAATAAAA+GGG | - | tig0021994:1484-1503 | Msa1396090:intergenic | 20.0% |
| !! | TCGATAAATCAAAGAATAAA+AGG | - | tig0021994:1485-1504 | Msa1396090:intergenic | 20.0% |
| !!! | ATGTACAAATTTTACAGATT+AGG | - | tig0021994:1706-1725 | Msa1396090:intergenic | 20.0% |
| !! | AAATAAATTAGGGCTATAAT+TGG | + | tig0021994:1757-1776 | Msa1396090:three_prime_UTR | 20.0% |
| !! | TAGTTTATAGCATATGTTTA+TGG | + | tig0021994:447-466 | Msa1396090:intron | 20.0% |
| !! | TTATTAAAGAAATTGGTAGA+AGG | - | tig0021994:1057-1076 | Msa1396090:intergenic | 20.0% |
| !! | GTTTATATATCTAAATCCTT+TGG | + | tig0021994:1108-1127 | Msa1396090:intron | 20.0% |
| !! | TATCAATAATTCATAGGAAT+AGG | - | tig0021994:1135-1154 | Msa1396090:intergenic | 20.0% |
| !!! | TGAAAGTATCAATAATTCAT+AGG | - | tig0021994:1141-1160 | Msa1396090:intergenic | 20.0% |
| !!! | TTTTGCATGATTTTGAATTT+TGG | + | tig0021994:1347-1366 | Msa1396090:intron | 20.0% |
| !! | CGATAAATCAAAGAATAAAA+GGG | - | tig0021994:1484-1503 | Msa1396090:intergenic | 20.0% |
| !! | TCGATAAATCAAAGAATAAA+AGG | - | tig0021994:1485-1504 | Msa1396090:intergenic | 20.0% |
| !!! | ATGTACAAATTTTACAGATT+AGG | - | tig0021994:1706-1725 | Msa1396090:intergenic | 20.0% |
| !! | AAATAAATTAGGGCTATAAT+TGG | + | tig0021994:1757-1776 | Msa1396090:three_prime_UTR | 20.0% |
| !!! | TAAATCTACCCATTTTTTTC+AGG | + | tig0021994:199-218 | Msa1396090:intron | 25.0% |
| !! | TAATGGATATCATGCATATT+TGG | - | tig0021994:228-247 | Msa1396090:intergenic | 25.0% |
| ! | TGAACACAAAAAGTGATTAA+TGG | - | tig0021994:245-264 | Msa1396090:intergenic | 25.0% |
| ! | GGTGATTAATTAATGTAACA+AGG | - | tig0021994:325-344 | Msa1396090:intergenic | 25.0% |
| ! | AAATACGACAACAATTTGAA+TGG | - | tig0021994:387-406 | Msa1396090:intergenic | 25.0% |
| ! | AAAAGAATATTAAGAACTCG+TGG | - | tig0021994:655-674 | Msa1396090:intergenic | 25.0% |
| !!! | TTTCATTTTTGGCATTTTTC+TGG | + | tig0021994:673-692 | Msa1396090:intron | 25.0% |
| !!! | TTCATTTTTGGCATTTTTCT+GGG | + | tig0021994:674-693 | Msa1396090:intron | 25.0% |
| ! | GGAGATATTTCAATTTACAA+TGG | + | tig0021994:767-786 | Msa1396090:CDS | 25.0% |
| ! | ATTTCAATTTACAATGGTTC+AGG | + | tig0021994:773-792 | Msa1396090:CDS | 25.0% |
| ! | TTGATTGTCATTATAAGTGT+TGG | + | tig0021994:1227-1246 | Msa1396090:intron | 25.0% |
| ! | AACATAGAATTATGAACTGT+TGG | + | tig0021994:1445-1464 | Msa1396090:intron | 25.0% |
| !! | TAGCATATCACTTTATGTTT+TGG | - | tig0021994:1665-1684 | Msa1396090:intergenic | 25.0% |
| ! | TGCAAGATAGAATAAAATGA+AGG | + | tig0021994:1876-1895 | Msa1396090:three_prime_UTR | 25.0% |
| ! | GCAAGATAGAATAAAATGAA+GGG | + | tig0021994:1877-1896 | Msa1396090:three_prime_UTR | 25.0% |
| !!! | TAAATCTACCCATTTTTTTC+AGG | + | tig0021994:199-218 | Msa1396090:intron | 25.0% |
| !! | TAATGGATATCATGCATATT+TGG | - | tig0021994:228-247 | Msa1396090:intergenic | 25.0% |
| ! | TGAACACAAAAAGTGATTAA+TGG | - | tig0021994:245-264 | Msa1396090:intergenic | 25.0% |
| ! | GGTGATTAATTAATGTAACA+AGG | - | tig0021994:325-344 | Msa1396090:intergenic | 25.0% |
| ! | AAATACGACAACAATTTGAA+TGG | - | tig0021994:387-406 | Msa1396090:intergenic | 25.0% |
| ! | AAAAGAATATTAAGAACTCG+TGG | - | tig0021994:655-674 | Msa1396090:intergenic | 25.0% |
| !!! | TTTCATTTTTGGCATTTTTC+TGG | + | tig0021994:673-692 | Msa1396090:intron | 25.0% |
| !!! | TTCATTTTTGGCATTTTTCT+GGG | + | tig0021994:674-693 | Msa1396090:intron | 25.0% |
| ! | GGAGATATTTCAATTTACAA+TGG | + | tig0021994:767-786 | Msa1396090:CDS | 25.0% |
| ! | ATTTCAATTTACAATGGTTC+AGG | + | tig0021994:773-792 | Msa1396090:CDS | 25.0% |
| ! | TTGATTGTCATTATAAGTGT+TGG | + | tig0021994:1227-1246 | Msa1396090:intron | 25.0% |
| ! | AACATAGAATTATGAACTGT+TGG | + | tig0021994:1445-1464 | Msa1396090:intron | 25.0% |
| !! | TAGCATATCACTTTATGTTT+TGG | - | tig0021994:1665-1684 | Msa1396090:intergenic | 25.0% |
| ! | AAATAGGTTGACCTTTCAAA+AGG | - | tig0021994:38-57 | Msa1285910:intergenic | 30.0% |
| ! | TTTGAAAGGTCAACCTATTT+TGG | + | tig0021994:38-57 | Msa1396090:CDS | 30.0% |
| TTTGGACACCTGAAAAAAAT+GGG | - | tig0021994:210-229 | Msa1396090:intergenic | 30.0% | |
| ATTTGGACACCTGAAAAAAA+TGG | - | tig0021994:211-230 | Msa1396090:intergenic | 30.0% | |
| AAGTATACACTTAAAAGTCG+TGG | + | tig0021994:264-283 | Msa1396090:intron | 30.0% | |
| TAACACACTTCTACATTGAT+TGG | + | tig0021994:417-436 | Msa1396090:intron | 30.0% | |
| !!! | TCATTTTTGGCATTTTTCTG+GGG | + | tig0021994:675-694 | Msa1396090:intron | 30.0% |
| AACAGAACAAATATAAGCAG+CGG | + | tig0021994:712-731 | Msa1396090:intron | 30.0% | |
| ! | TAGTTGATGTCTAACAAGAA+TGG | - | tig0021994:816-835 | Msa1396090:intergenic | 30.0% |
| CGCTTTGTATAAATAACTCT+TGG | + | tig0021994:1005-1024 | Msa1396090:intron | 30.0% | |
| ! | AGACACACGTTTAATTTCAA+GGG | + | tig0021994:1282-1301 | Msa1396090:intron | 30.0% |
| !! | TATCCATCTCTTGTTGTTAT+TGG | + | tig0021994:1508-1527 | Msa1396090:intron | 30.0% |
| ! | AAATAGGTTGACCTTTCAAA+AGG | - | tig0021994:38-57 | Msa1396090:intergenic | 30.0% |
| ! | TTTGAAAGGTCAACCTATTT+TGG | + | tig0021994:38-57 | Msa1396090:CDS | 30.0% |
| TTTGGACACCTGAAAAAAAT+GGG | - | tig0021994:210-229 | Msa1396090:intergenic | 30.0% | |
| ATTTGGACACCTGAAAAAAA+TGG | - | tig0021994:211-230 | Msa1396090:intergenic | 30.0% | |
| AAGTATACACTTAAAAGTCG+TGG | + | tig0021994:264-283 | Msa1396090:intron | 30.0% | |
| TAACACACTTCTACATTGAT+TGG | + | tig0021994:417-436 | Msa1396090:intron | 30.0% | |
| !!! | TCATTTTTGGCATTTTTCTG+GGG | + | tig0021994:675-694 | Msa1396090:intron | 30.0% |
| AACAGAACAAATATAAGCAG+CGG | + | tig0021994:712-731 | Msa1396090:intron | 30.0% | |
| ! | TAGTTGATGTCTAACAAGAA+TGG | - | tig0021994:816-835 | Msa1396090:intergenic | 30.0% |
| CGCTTTGTATAAATAACTCT+TGG | + | tig0021994:1005-1024 | Msa1396090:intron | 30.0% | |
| ! | AGACACACGTTTAATTTCAA+GGG | + | tig0021994:1282-1301 | Msa1396090:intron | 30.0% |
| !! | TATCCATCTCTTGTTGTTAT+TGG | + | tig0021994:1508-1527 | Msa1396090:intron | 30.0% |
| ATCAAAGAATGGGCCAAAAT+AGG | - | tig0021994:54-73 | Msa1396090:intergenic | 35.0% | |
| !!! | GATATTTTGATCTCAGTCCA+AGG | + | tig0021994:118-137 | Msa1396090:intron | 35.0% |
| TCATGATTAATTACGCTCAG+AGG | - | tig0021994:164-183 | Msa1396090:intergenic | 35.0% | |
| CTCTTCTTATGCAGTTTGAA+AGG | + | tig0021994:488-507 | Msa1396090:intron | 35.0% | |
| ! | ATAAGACTCGGTAAGTAGAA+TGG | - | tig0021994:531-550 | Msa1396090:intergenic | 35.0% |
| ! | TTCTACTTACCGAGTCTTAT+TGG | + | tig0021994:531-550 | Msa1396090:CDS | 35.0% |
| !! | TCTACTTACCGAGTCTTATT+GGG | + | tig0021994:532-551 | Msa1396090:CDS | 35.0% |
| GATCATGAGCAGTTTATTTG+TGG | + | tig0021994:570-589 | Msa1396090:CDS | 35.0% | |
| TGTGGAGGAGGTAAATAAAA+TGG | + | tig0021994:588-607 | Msa1396090:intron | 35.0% | |
| ! | ACAAATATAAGCAGCGGATT+TGG | + | tig0021994:718-737 | Msa1396090:CDS | 35.0% |
| ! | CAAATATAAGCAGCGGATTT+GGG | + | tig0021994:719-738 | Msa1396090:CDS | 35.0% |
| !!! | GTAATCAGCTCCTGATTTTT+TGG | + | tig0021994:965-984 | Msa1396090:intron | 35.0% |
| ACTATCGCTACCAAAAAATC+AGG | - | tig0021994:978-997 | Msa1396090:intergenic | 35.0% | |
| ! | CAGACACACGTTTAATTTCA+AGG | + | tig0021994:1281-1300 | Msa1396090:intron | 35.0% |
| AGTTGTGATCTTACCACATT+GGG | + | tig0021994:1379-1398 | Msa1396090:intron | 35.0% | |
| !! | CATGACTTGGATACATTTTC+TGG | + | tig0021994:1582-1601 | Msa1396090:CDS | 35.0% |
| !!! | ATCACTTTATGTTTTGGCCA+TGG | - | tig0021994:1659-1678 | Msa1396090:intergenic | 35.0% |
| !! | AACATTTTGGTAAAATGCGC+AGG | - | tig0021994:1808-1827 | Msa1396090:intergenic | 35.0% |
| ! | GCATTTTACCAAAATGTTGC+AGG | + | tig0021994:1810-1829 | Msa1396090:three_prime_UTR | 35.0% |
| ATCAAAGAATGGGCCAAAAT+AGG | - | tig0021994:54-73 | Msa1396090:intergenic | 35.0% | |
| !!! | GATATTTTGATCTCAGTCCA+AGG | + | tig0021994:118-137 | Msa1396090:intron | 35.0% |
| TCATGATTAATTACGCTCAG+AGG | - | tig0021994:164-183 | Msa1396090:intergenic | 35.0% | |
| CTCTTCTTATGCAGTTTGAA+AGG | + | tig0021994:488-507 | Msa1396090:intron | 35.0% | |
| ! | ATAAGACTCGGTAAGTAGAA+TGG | - | tig0021994:531-550 | Msa1396090:intergenic | 35.0% |
| ! | TTCTACTTACCGAGTCTTAT+TGG | + | tig0021994:531-550 | Msa1396090:CDS | 35.0% |
| !! | TCTACTTACCGAGTCTTATT+GGG | + | tig0021994:532-551 | Msa1396090:CDS | 35.0% |
| GATCATGAGCAGTTTATTTG+TGG | + | tig0021994:570-589 | Msa1396090:CDS | 35.0% | |
| TGTGGAGGAGGTAAATAAAA+TGG | + | tig0021994:588-607 | Msa1396090:intron | 35.0% | |
| ! | ACAAATATAAGCAGCGGATT+TGG | + | tig0021994:718-737 | Msa1396090:CDS | 35.0% |
| ! | CAAATATAAGCAGCGGATTT+GGG | + | tig0021994:719-738 | Msa1396090:CDS | 35.0% |
| !!! | GTAATCAGCTCCTGATTTTT+TGG | + | tig0021994:965-984 | Msa1396090:intron | 35.0% |
| ACTATCGCTACCAAAAAATC+AGG | - | tig0021994:978-997 | Msa1396090:intergenic | 35.0% | |
| ! | CAGACACACGTTTAATTTCA+AGG | + | tig0021994:1281-1300 | Msa1396090:intron | 35.0% |
| AGTTGTGATCTTACCACATT+GGG | + | tig0021994:1379-1398 | Msa1396090:intron | 35.0% | |
| !! | CATGACTTGGATACATTTTC+TGG | + | tig0021994:1582-1601 | Msa1396090:CDS | 35.0% |
| !!! | ATCACTTTATGTTTTGGCCA+TGG | - | tig0021994:1659-1678 | Msa1396090:intergenic | 35.0% |
| !! | AACATTTTGGTAAAATGCGC+AGG | - | tig0021994:1808-1827 | Msa1396090:intergenic | 35.0% |
| ! | GCATTTTACCAAAATGTTGC+AGG | + | tig0021994:1810-1829 | Msa1396090:three_prime_UTR | 35.0% |
| TTTGGCCCATTCTTTGATCT+CGG | + | tig0021994:56-75 | Msa1396090:CDS | 40.0% | |
| GATTAATTACGCTCAGAGGA+TGG | - | tig0021994:160-179 | Msa1396090:intergenic | 40.0% | |
| ATTTGTCAATCACGTTCAGC+AGG | - | tig0021994:346-365 | Msa1396090:intergenic | 40.0% | |
| CATGAGCAGTTTATTTGTGG+AGG | + | tig0021994:573-592 | Msa1396090:CDS | 40.0% | |
| TGAAATATCTCCTCTTCCTC+TGG | - | tig0021994:759-778 | Msa1396090:intergenic | 40.0% | |
| ATTCATAGGAATAGGCCCAA+AGG | - | tig0021994:1127-1146 | Msa1396090:intergenic | 40.0% | |
| AACGTGTGTCTGATATGTGT+TGG | - | tig0021994:1273-1292 | Msa1396090:intergenic | 40.0% | |
| ! | ACACGTTTAATTTCAAGGGC+CGG | + | tig0021994:1286-1305 | Msa1396090:intron | 40.0% |
| AGTATAGACCTGTGTAACAC+CGG | - | tig0021994:1308-1327 | Msa1396090:intergenic | 40.0% | |
| GAGTTGTGATCTTACCACAT+TGG | + | tig0021994:1378-1397 | Msa1396090:intron | 40.0% | |
| AATCATCTAGCTACCCAATG+TGG | - | tig0021994:1395-1414 | Msa1396090:intergenic | 40.0% | |
| CTGCCAATAACAACAAGAGA+TGG | - | tig0021994:1514-1533 | Msa1396090:intergenic | 40.0% | |
| !! | TCTCTTGTTGTTATTGGCAG+CGG | + | tig0021994:1514-1533 | Msa1396090:intron | 40.0% |
| ! | GACTTGGATACATTTTCTGG+TGG | + | tig0021994:1585-1604 | Msa1396090:CDS | 40.0% |
| CTGTTTACATTGGATCAGCA+AGG | - | tig0021994:1784-1803 | Msa1396090:intergenic | 40.0% | |
| GAGTATAAGCGTGAAACACA+TGG | - | tig0021994:1841-1860 | Msa1396090:intergenic | 40.0% | |
| TTTGGCCCATTCTTTGATCT+CGG | + | tig0021994:56-75 | Msa1396090:CDS | 40.0% | |
| GATTAATTACGCTCAGAGGA+TGG | - | tig0021994:160-179 | Msa1396090:intergenic | 40.0% | |
| ATTTGTCAATCACGTTCAGC+AGG | - | tig0021994:346-365 | Msa1396090:intergenic | 40.0% | |
| CATGAGCAGTTTATTTGTGG+AGG | + | tig0021994:573-592 | Msa1396090:CDS | 40.0% | |
| TGAAATATCTCCTCTTCCTC+TGG | - | tig0021994:759-778 | Msa1396090:intergenic | 40.0% | |
| ATTCATAGGAATAGGCCCAA+AGG | - | tig0021994:1127-1146 | Msa1396090:intergenic | 40.0% | |
| AACGTGTGTCTGATATGTGT+TGG | - | tig0021994:1273-1292 | Msa1396090:intergenic | 40.0% | |
| ! | ACACGTTTAATTTCAAGGGC+CGG | + | tig0021994:1286-1305 | Msa1396090:intron | 40.0% |
| AGTATAGACCTGTGTAACAC+CGG | - | tig0021994:1308-1327 | Msa1396090:intergenic | 40.0% | |
| GAGTTGTGATCTTACCACAT+TGG | + | tig0021994:1378-1397 | Msa1396090:intron | 40.0% | |
| AATCATCTAGCTACCCAATG+TGG | - | tig0021994:1395-1414 | Msa1396090:intergenic | 40.0% | |
| CTGCCAATAACAACAAGAGA+TGG | - | tig0021994:1514-1533 | Msa1396090:intergenic | 40.0% | |
| !! | TCTCTTGTTGTTATTGGCAG+CGG | + | tig0021994:1514-1533 | Msa1396090:intron | 40.0% |
| ! | GACTTGGATACATTTTCTGG+TGG | + | tig0021994:1585-1604 | Msa1396090:CDS | 40.0% |
| CTGTTTACATTGGATCAGCA+AGG | - | tig0021994:1784-1803 | Msa1396090:intergenic | 40.0% | |
| GAGTATAAGCGTGAAACACA+TGG | - | tig0021994:1841-1860 | Msa1396090:intergenic | 40.0% | |
| CCTGACCGAGATCAAAGAAT+GGG | - | tig0021994:64-83 | Msa1396090:intergenic | 45.0% | |
| ACCTGACCGAGATCAAAGAA+TGG | - | tig0021994:65-84 | Msa1396090:intergenic | 45.0% | |
| CCTTGTGACCCAATAAGACT+CGG | - | tig0021994:543-562 | Msa1396090:intergenic | 45.0% | |
| GAGCAGTTTATTTGTGGAGG+AGG | + | tig0021994:576-595 | Msa1396090:CDS | 45.0% | |
| ! | ACTCGTGGCAGTGACTTTTT+GGG | - | tig0021994:640-659 | Msa1396090:intergenic | 45.0% |
| ! | AACTCGTGGCAGTGACTTTT+TGG | - | tig0021994:641-660 | Msa1396090:intergenic | 45.0% |
| !! | CTCTTGTTGTTATTGGCAGC+GGG | + | tig0021994:1515-1534 | Msa1396090:intron | 45.0% |
| AGAGTCTCTGCTTCATGACT+TGG | + | tig0021994:1569-1588 | Msa1396090:CDS | 45.0% | |
| GTCAGTTTCATGAAGCTCCA+TGG | + | tig0021994:1639-1658 | Msa1396090:three_prime_UTR | 45.0% | |
| ATGCGCAGGACTGTTTACAT+TGG | - | tig0021994:1794-1813 | Msa1396090:intergenic | 45.0% | |
| CCTGACCGAGATCAAAGAAT+GGG | - | tig0021994:64-83 | Msa1396090:intergenic | 45.0% | |
| ACCTGACCGAGATCAAAGAA+TGG | - | tig0021994:65-84 | Msa1396090:intergenic | 45.0% | |
| CCTTGTGACCCAATAAGACT+CGG | - | tig0021994:543-562 | Msa1396090:intergenic | 45.0% | |
| GAGCAGTTTATTTGTGGAGG+AGG | + | tig0021994:576-595 | Msa1396090:CDS | 45.0% | |
| ! | ACTCGTGGCAGTGACTTTTT+GGG | - | tig0021994:640-659 | Msa1396090:intergenic | 45.0% |
| ! | AACTCGTGGCAGTGACTTTT+TGG | - | tig0021994:641-660 | Msa1396090:intergenic | 45.0% |
| !! | CTCTTGTTGTTATTGGCAGC+GGG | + | tig0021994:1515-1534 | Msa1396090:intron | 45.0% |
| AGAGTCTCTGCTTCATGACT+TGG | + | tig0021994:1569-1588 | Msa1396090:CDS | 45.0% | |
| GTCAGTTTCATGAAGCTCCA+TGG | + | tig0021994:1639-1658 | Msa1396090:three_prime_UTR | 45.0% | |
| ATGCGCAGGACTGTTTACAT+TGG | - | tig0021994:1794-1813 | Msa1396090:intergenic | 45.0% | |
| CCCATTCTTTGATCTCGGTC+AGG | + | tig0021994:61-80 | Msa1396090:CDS | 50.0% | |
| GTTACTGAGTTGCGACACCT+TGG | - | tig0021994:138-157 | Msa1396090:intergenic | 50.0% | |
| !! | CCGAGTCTTATTGGGTCACA+AGG | + | tig0021994:540-559 | Msa1396090:CDS | 50.0% |
| ! | TGTTGTTATTGGCAGCGGGT+TGG | + | tig0021994:1519-1538 | Msa1396090:intron | 50.0% |
| GTGGTTGCTGGGATGGTTAT+TGG | + | tig0021994:1541-1560 | Msa1396090:CDS | 50.0% | |
| ! | TGGCGACTCCTGCAACATTT+TGG | - | tig0021994:1821-1840 | Msa1396090:intergenic | 50.0% |
| CCCATTCTTTGATCTCGGTC+AGG | + | tig0021994:61-80 | Msa1396090:CDS | 50.0% | |
| GTTACTGAGTTGCGACACCT+TGG | - | tig0021994:138-157 | Msa1396090:intergenic | 50.0% | |
| !! | CCGAGTCTTATTGGGTCACA+AGG | + | tig0021994:540-559 | Msa1396090:CDS | 50.0% |
| ! | TGTTGTTATTGGCAGCGGGT+TGG | + | tig0021994:1519-1538 | Msa1396090:intron | 50.0% |
| GTGGTTGCTGGGATGGTTAT+TGG | + | tig0021994:1541-1560 | Msa1396090:CDS | 50.0% | |
| ! | TGGCGACTCCTGCAACATTT+TGG | - | tig0021994:1821-1840 | Msa1396090:intergenic | 50.0% |
| ! | AAGCAGCGGATTTGGGTTCG+AGG | + | tig0021994:726-745 | Msa1396090:CDS | 55.0% |
| AGGAAGTCGACCAGAGGAAG+AGG | + | tig0021994:746-765 | Msa1396090:CDS | 55.0% | |
| !! | TTCAAGGGCCGGTGTTACAC+AGG | + | tig0021994:1297-1316 | Msa1396090:intron | 55.0% |
| !! | TGTTATTGGCAGCGGGTTGG+TGG | + | tig0021994:1522-1541 | Msa1396090:intron | 55.0% |
| ! | AAGCAGCGGATTTGGGTTCG+AGG | + | tig0021994:726-745 | Msa1396090:CDS | 55.0% |
| AGGAAGTCGACCAGAGGAAG+AGG | + | tig0021994:746-765 | Msa1396090:CDS | 55.0% | |
| !! | TTCAAGGGCCGGTGTTACAC+AGG | + | tig0021994:1297-1316 | Msa1396090:intron | 55.0% |
| !! | TGTTATTGGCAGCGGGTTGG+TGG | + | tig0021994:1522-1541 | Msa1396090:intron | 55.0% |
| GGTTCGAGGAAGTCGACCAG+AGG | + | tig0021994:740-759 | Msa1396090:CDS | 60.0% | |
| GGTTCGAGGAAGTCGACCAG+AGG | + | tig0021994:740-759 | Msa1396090:CDS | 60.0% | |
| !! | GCAGCGGGTTGGTGGTTGCT+GGG | + | tig0021994:1530-1549 | Msa1396090:intron | 65.0% |
| !! | CGGGTTGGTGGTTGCTGGGA+TGG | + | tig0021994:1534-1553 | Msa1396090:CDS | 65.0% |
| !! | GCAGCGGGTTGGTGGTTGCT+GGG | + | tig0021994:1530-1549 | Msa1396090:intron | 65.0% |
| !! | CGGGTTGGTGGTTGCTGGGA+TGG | + | tig0021994:1534-1553 | Msa1396090:CDS | 65.0% |
| !! | GGCAGCGGGTTGGTGGTTGC+TGG | + | tig0021994:1529-1548 | Msa1396090:intron | 70.0% |
| !! | GGCAGCGGGTTGGTGGTTGC+TGG | + | tig0021994:1529-1548 | Msa1396090:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0021994 | gene | 26 | 1897 | 26 | ID=Msa1396090;Name=Msa1396090 |
| tig0021994 | mRNA | 26 | 1897 | 26 | ID=Msa1396090-mRNA-1;Parent=Msa1396090;Name=Msa1396090-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|1|0.75|1|1|0.75|4|277|105 |
| tig0021994 | exon | 26 | 82 | 26 | ID=Msa1396090-mRNA-1:exon:15285;Parent=Msa1396090-mRNA-1 |
| tig0021994 | exon | 502 | 597 | 502 | ID=Msa1396090-mRNA-1:exon:15286;Parent=Msa1396090-mRNA-1 |
| tig0021994 | exon | 717 | 794 | 717 | ID=Msa1396090-mRNA-1:exon:15287;Parent=Msa1396090-mRNA-1 |
| tig0021994 | exon | 1534 | 1897 | 1534 | ID=Msa1396090-mRNA-1:exon:15288;Parent=Msa1396090-mRNA-1 |
| tig0021994 | CDS | 26 | 82 | 26 | ID=Msa1396090-mRNA-1:cds;Parent=Msa1396090-mRNA-1 |
| tig0021994 | CDS | 502 | 597 | 502 | ID=Msa1396090-mRNA-1:cds;Parent=Msa1396090-mRNA-1 |
| tig0021994 | CDS | 717 | 794 | 717 | ID=Msa1396090-mRNA-1:cds;Parent=Msa1396090-mRNA-1 |
| tig0021994 | CDS | 1534 | 1620 | 1534 | ID=Msa1396090-mRNA-1:cds;Parent=Msa1396090-mRNA-1 |
| tig0021994 | three_prime_UTR | 1621 | 1897 | 1621 | ID=Msa1396090-mRNA-1:three_prime_utr;Parent=Msa1396090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
