AlfalfaGEDB | Msa1458210

M. sativa cultivar zhongmu-4 / Msa1458210

KEGG: K13127
GO: GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016071 GO:0016074 GO:0032991 GO:0034247 GO:0034470 GO:0034641 GO:0034660 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1990904
PFAM: PF00642.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1458210	XP_013450398.1	96.942	327	10	0	1	327	1	327	0.0	661

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1458210	sp\|Q8GX84\|C3H1_ARATH	69.375	320	95	2	8	327	20	336	3.39e-162	459

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1458210	A0A072U502	96.942	327	10	0	1	327	1	327	0.0	661

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TFs/TRs:

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Gene ID	Type	Classification
Msa1458210	TF	C3H

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0093960	Msa1458210	0.814244	1.700517e-51	-8.615850e-47
Msa0387910	Msa1458210	0.811191	7.920534e-51	-8.615850e-47
Msa0489410	Msa1458210	0.804915	1.717985e-49	-8.615850e-47
Msa0618930	Msa1458210	0.803261	3.792838e-49	-8.615850e-47
Msa0719420	Msa1458210	0.811764	5.948029e-51	-8.615850e-47
Msa0719610	Msa1458210	0.829126	6.126508e-55	-8.615850e-47
Msa0763330	Msa1458210	0.809888	1.514765e-50	-8.615850e-47
Msa0772480	Msa1458210	0.820277	7.467837e-53	-8.615850e-47
Msa0789680	Msa1458210	0.812668	3.776188e-51	-8.615850e-47
Msa0798440	Msa1458210	0.825707	4.047029e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1458210	MtrunA17_Chr7g0269781	96.942	327	10	0	1	327	1	327	0.0	661

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1458210	AT1G01350.1	69.375	320	95	2	8	327	20	336	3.44e-163	459
Msa1458210	AT5G06420.1	68.125	320	96	2	8	327	58	371	3.29e-161	455
Msa1458210	AT5G06420.2	68.125	320	96	2	8	327	58	371	3.29e-161	455
Msa1458210	AT4G01023.1	64.407	59	21	0	258	316	76	134	2.58e-26	104
Msa1458210	AT4G01023.3	65.079	63	21	1	254	316	92	153	5.98e-26	104
Msa1458210	AT4G01023.2	64.407	59	21	0	258	316	95	153	8.42e-26	103

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Find 84 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGACAGAACAAAAGAG+AGG	0.617311	tig0039443:+990	Msa1458210:intergenic
AAAGAGGAAGAAAGTTGCAA+AGG	0.506039	tig0039443:+4228	Msa1458210:intergenic
AAATGAAAGCTGGGTTTCTC+AGG	0.415855	tig0039443:+1905	Msa1458210:intergenic
AAATGACAGAACAAAAGAGA+GGG	0.580612	tig0039443:+991	Msa1458210:intergenic
AAGAAAATTCGAAGCAAGCA+AGG	0.590196	tig0039443:-4115	Msa1458210:intron
AAGAGGAAGAAAGTTGCAAA+GGG	0.442815	tig0039443:+4229	Msa1458210:intergenic
AATGACAGAACAAAAGAGAG+GGG	0.684921	tig0039443:+992	Msa1458210:intergenic
AATTATACAGATCATAAGGC+TGG	0.520545	tig0039443:-1701	Msa1458210:CDS
ACAAGGAAACTGGTTACTGT+GGG	0.647981	tig0039443:-1556	Msa1458210:CDS
ACAATTGCCAGTGAAAAGGC+TGG	0.588175	tig0039443:-1662	Msa1458210:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTCTATAAGATGATGATTTC+TGG	-	tig0039443:1118-1137	Msa1458210:CDS	30.0%
AAATCGAAACATCCTATGTT+CGG	+	tig0039443:1156-1175	Msa1458210:intergenic	30.0%
CAAATAGGATGGCTATTATT+TGG	+	tig0039443:1427-1446	Msa1458210:intergenic	30.0%
CAAATAATAGCCATCCTATT+TGG	-	tig0039443:1425-1444	Msa1458210:CDS	30.0%
CAAAGTCTTCTTAAATACCA+TGG	-	tig0039443:1523-1542	Msa1458210:CDS	30.0%
AAATCCTGCTAAATACATAG+TGG	+	tig0039443:1585-1604	Msa1458210:intergenic	30.0%
TTTGGTTATCTATGATGATC+TGG	-	tig0039443:1753-1772	Msa1458210:CDS	30.0%
CTCAACCAAAATTAATGCAA+GGG	+	tig0039443:1836-1855	Msa1458210:intergenic	30.0%
CTAGCTTATATCACCTAAAA+TGG	+	tig0039443:1863-1882	Msa1458210:intergenic	30.0%
ACTGTCATACTATCAAAATG+GGG	+	tig0039443:2056-2075	Msa1458210:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0039443	gene	785	4284	785	ID=Msa1458210;Name=Msa1458210
tig0039443	mRNA	785	4284	785	ID=Msa1458210-mRNA-1;Parent=Msa1458210;Name=Msa1458210-mRNA-1;_AED=0.14;_eAED=0.14;_QI=178\|1\|1\|1\|0.66\|0.75\|4\|286\|327
tig0039443	exon	785	1172	785	ID=Msa1458210-mRNA-1:exon:21643;Parent=Msa1458210-mRNA-1
tig0039443	exon	1292	2124	1292	ID=Msa1458210-mRNA-1:exon:21642;Parent=Msa1458210-mRNA-1
tig0039443	exon	2237	2294	2237	ID=Msa1458210-mRNA-1:exon:21641;Parent=Msa1458210-mRNA-1
tig0039443	exon	4116	4284	4116	ID=Msa1458210-mRNA-1:exon:21640;Parent=Msa1458210-mRNA-1
tig0039443	five_prime_UTR	4116	4284	4116	ID=Msa1458210-mRNA-1:five_prime_utr;Parent=Msa1458210-mRNA-1
tig0039443	five_prime_UTR	2286	2294	2286	ID=Msa1458210-mRNA-1:five_prime_utr;Parent=Msa1458210-mRNA-1
tig0039443	CDS	2237	2285	2237	ID=Msa1458210-mRNA-1:cds;Parent=Msa1458210-mRNA-1
tig0039443	CDS	1292	2124	1292	ID=Msa1458210-mRNA-1:cds;Parent=Msa1458210-mRNA-1
tig0039443	CDS	1071	1172	1071	ID=Msa1458210-mRNA-1:cds;Parent=Msa1458210-mRNA-1
tig0039443	three_prime_UTR	785	1070	785	ID=Msa1458210-mRNA-1:three_prime_utr;Parent=Msa1458210-mRNA-1

Gene Sequence

>Msa1458210

ATGGAAAATTCTGAGGCCAAATCTGCTGAAAACCAGCCGACTGAACAAGTGTGTAGTTTCTTCAGAAAACCTGTTAATAGGAAGAATATGAGGAAGCGGACTATTGAGAATGAAGATAATGAGGATGACTCGAATAATGAAGAGTCTTTGATGCATGTTCAGAAAAAGAACATGAAGGCTGATAATAAGTTATTCTTTTCCACCGGCTCTTCGAAGAGCTCTGCATCTGCTAAACTGAATGAAGAACCTGAGAAACCCAGCTTTCATTTCGAGTCTTCTAAAGAGATTCAAGTTCAACATGATAGCAAAGCAACAGCAACTTTGGAGACTGAGACTGATTTTTCAAGAGATGCCCGTGCCATCCGTGAAAGAGCTCTTAAGCAAGCGACTGAGAGTCTCAAGGGAAAGAGTACTGGTTCCGAGGATGTAAAATTATACAAGGGAATCAATAATTATACAGATCATAAGGCTGGATTTCGTAGAGAGCAAACAATTGCCAGTGAAAAGGCTGGTGGGTCACACGGTCCTCTCAGGGCTTCGGCTCACATAAGAGTTTCAGCAAGATTTGATTATCAGCCAGATATATGCAAGGATTACAAGGAAACTGGTTACTGTGGGTATGGTGATTCGTGTAAGTTTATGCATGATCGAGGTGATTACAAATCTGGGTGGCAGATGGAGAAAGAATGGGATGAAGCTGAGAAAGCAAGGAAGATGAGATTGGCTGCAGGTGAGGATGCGGAAGAGGAAGGTGCTAGTTTGAATGATGAAGATGATGATGAAGACGTATTACCATTTGCGTGTTTCATTTGTCGAAACCCATTTGTGGATCCTGTCTCAACCAAGTGTAAGCACTACTTCTGTGAGCATTGTGCATTGAAGCATCATGCGAAGAATAAGAAGTGTTTTGTCTGCAATCAGCCTACGCTTGGCATTTTTAATGTGGCTCATGAGATACGAAAGAAGATGGCTGAGGATAAATAG

Protein sequence

>Msa1458210

MENSEAKSAENQPTEQVCSFFRKPVNRKNMRKRTIENEDNEDDSNNEESLMHVQKKNMKADNKLFFSTGSSKSSASAKLNEEPEKPSFHFESSKEIQVQHDSKATATLETETDFSRDARAIRERALKQATESLKGKSTGSEDVKLYKGINNYTDHKAGFRREQTIASEKAGGSHGPLRASAHIRVSARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQMEKEWDEAEKARKMRLAAGEDAEEEGASLNDEDDDEDVLPFACFICRNPFVDPVSTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGIFNVAHEIRKKMAEDK*