Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1458210 | XP_013450398.1 | 96.942 | 327 | 10 | 0 | 1 | 327 | 1 | 327 | 0.0 | 661 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1458210 | sp|Q8GX84|C3H1_ARATH | 69.375 | 320 | 95 | 2 | 8 | 327 | 20 | 336 | 3.39e-162 | 459 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1458210 | A0A072U502 | 96.942 | 327 | 10 | 0 | 1 | 327 | 1 | 327 | 0.0 | 661 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1458210 | TF | C3H |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0093960 | Msa1458210 | 0.814244 | 1.700517e-51 | -8.615850e-47 |
| Msa1362090 | Msa1458210 | 0.947239 | 9.900386e-106 | -8.615850e-47 |
| Msa0618930 | Msa1458210 | 0.803261 | 3.792838e-49 | -8.615850e-47 |
| Msa0719420 | Msa1458210 | 0.811764 | 5.948029e-51 | -8.615850e-47 |
| Msa0719610 | Msa1458210 | 0.829126 | 6.126508e-55 | -8.615850e-47 |
| Msa0763330 | Msa1458210 | 0.809888 | 1.514765e-50 | -8.615850e-47 |
| Msa0772480 | Msa1458210 | 0.820277 | 7.467837e-53 | -8.615850e-47 |
| Msa0789680 | Msa1458210 | 0.812668 | 3.776188e-51 | -8.615850e-47 |
| Msa0798440 | Msa1458210 | 0.825707 | 4.047029e-54 | -8.615850e-47 |
| Msa0387910 | Msa1458210 | 0.811191 | 7.920534e-51 | -8.615850e-47 |
| Msa0489410 | Msa1458210 | 0.804915 | 1.717985e-49 | -8.615850e-47 |
| Msa0867120 | Msa1458210 | 0.882855 | 7.336179e-71 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1458210 | MtrunA17_Chr7g0269781 | 96.942 | 327 | 10 | 0 | 1 | 327 | 1 | 327 | 0.0 | 661 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1458210 | AT1G01350.1 | 69.375 | 320 | 95 | 2 | 8 | 327 | 20 | 336 | 3.44e-163 | 459 |
| Msa1458210 | AT5G06420.1 | 68.125 | 320 | 96 | 2 | 8 | 327 | 58 | 371 | 3.29e-161 | 455 |
| Msa1458210 | AT5G06420.2 | 68.125 | 320 | 96 | 2 | 8 | 327 | 58 | 371 | 3.29e-161 | 455 |
| Msa1458210 | AT4G01023.1 | 64.407 | 59 | 21 | 0 | 258 | 316 | 76 | 134 | 2.58e-26 | 104 |
| Msa1458210 | AT4G01023.3 | 65.079 | 63 | 21 | 1 | 254 | 316 | 92 | 153 | 5.98e-26 | 104 |
| Msa1458210 | AT4G01023.2 | 64.407 | 59 | 21 | 0 | 258 | 316 | 95 | 153 | 8.42e-26 | 103 |
Find 84 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCACTACAAGATATATTT+TGG | 0.081156 | tig0039443:+871 | Msa1458210:intergenic |
| CAATGACTATGTTTGCTTCT+TGG | 0.240264 | tig0039443:-1024 | Msa1458210:three_prime_UTR |
| CTCATATTCTTCCTATTAAC+AGG | 0.250339 | tig0039443:+2082 | Msa1458210:intergenic |
| TTGAGTTGAAAACATATCTT+AGG | 0.269766 | tig0039443:-941 | Msa1458210:three_prime_UTR |
| TCTTCAGAAAACCTGTTAAT+AGG | 0.277151 | tig0039443:-2093 | Msa1458210:CDS |
| TTGTAATCCTTGCATATATC+TGG | 0.290645 | tig0039443:+1575 | Msa1458210:intergenic |
| GTGGGTCACACGGTCCTCTC+AGG | 0.313412 | tig0039443:-1640 | Msa1458210:CDS |
| GATCGAGGTGATTACAAATC+TGG | 0.331028 | tig0039443:-1506 | Msa1458210:CDS |
| CATTGTCTCATTGATCGTAT+TGG | 0.384962 | tig0039443:+1042 | Msa1458210:intergenic |
| TGCAAGGATTACAAGGAAAC+TGG | 0.409524 | tig0039443:-1566 | Msa1458210:CDS |
| AAATGAAAGCTGGGTTTCTC+AGG | 0.415855 | tig0039443:+1905 | Msa1458210:intergenic |
| CATTTGTCGAAACCCATTTG+TGG | 0.418726 | tig0039443:-1345 | Msa1458210:CDS |
| CTTGCTTAAGAGCTCTTTCA+CGG | 0.431115 | tig0039443:+1789 | Msa1458210:intergenic |
| CTGTGAGCATTGTGCATTGA+AGG | 0.436410 | tig0039443:-1291 | Msa1458210:intron |
| TAGCAAAGCAACAGCAACTT+TGG | 0.436558 | tig0039443:-1849 | Msa1458210:CDS |
| GTTGAGACAGGATCCACAAA+TGG | 0.441292 | tig0039443:+1332 | Msa1458210:intergenic |
| CTGTCTTGCTTAGAGAAGAA+TGG | 0.441799 | tig0039443:+4163 | Msa1458210:intergenic |
| AGAAGACTCGAAATGAAAGC+TGG | 0.441893 | tig0039443:+1895 | Msa1458210:intergenic |
| AAGAGGAAGAAAGTTGCAAA+GGG | 0.442815 | tig0039443:+4229 | Msa1458210:intergenic |
| ACACGGTCCTCTCAGGGCTT+CGG | 0.450938 | tig0039443:-1633 | Msa1458210:CDS |
| TGCTTACACTTGGTTGAGAC+AGG | 0.460245 | tig0039443:+1320 | Msa1458210:intergenic |
| TGACTATGTTTGCTTCTTGG+AGG | 0.467406 | tig0039443:-1021 | Msa1458210:three_prime_UTR |
| CAATAATTATACAGATCATA+AGG | 0.469416 | tig0039443:-1705 | Msa1458210:CDS |
| GGTGGCAGATGGAGAAAGAA+TGG | 0.469953 | tig0039443:-1484 | Msa1458210:CDS |
| TGCAGGTGAGGATGCGGAAG+AGG | 0.471533 | tig0039443:-1426 | Msa1458210:CDS |
| TGTTTGAAATAGTATGTTTG+TGG | 0.479928 | tig0039443:-838 | Msa1458210:three_prime_UTR |
| CGAGGATGTAAAATTATACA+AGG | 0.486690 | tig0039443:-1732 | Msa1458210:CDS |
| ACATACCTTGTTCAGTCGGC+TGG | 0.489348 | tig0039443:+2231 | Msa1458210:intergenic |
| GCAAACAATTGCCAGTGAAA+AGG | 0.499122 | tig0039443:-1666 | Msa1458210:CDS |
| CGACAAATGAAACACGCAAA+TGG | 0.499537 | tig0039443:+1359 | Msa1458210:intergenic |
| AAAGAGGAAGAAAGTTGCAA+AGG | 0.506039 | tig0039443:+4228 | Msa1458210:intergenic |
| GAAAGCAAGGAAGATGAGAT+TGG | 0.507679 | tig0039443:-1450 | Msa1458210:CDS |
| TGCAGAGCTCTTCGAAGAGC+CGG | 0.511210 | tig0039443:+1949 | Msa1458210:intergenic |
| AATTATACAGATCATAAGGC+TGG | 0.520545 | tig0039443:-1701 | Msa1458210:CDS |
| ATCGAGGTGATTACAAATCT+GGG | 0.520829 | tig0039443:-1505 | Msa1458210:CDS |
| GAGCTCTTTCACGGATGGCA+CGG | 0.524231 | tig0039443:+1798 | Msa1458210:intergenic |
| TTGAGACAGGATCCACAAAT+GGG | 0.525917 | tig0039443:+1333 | Msa1458210:intergenic |
| AGATATATGCAAGGATTACA+AGG | 0.530308 | tig0039443:-1573 | Msa1458210:CDS |
| TGGGTCACACGGTCCTCTCA+GGG | 0.532282 | tig0039443:-1639 | Msa1458210:CDS |
| CTTAAGAGCTCTTTCACGGA+TGG | 0.538525 | tig0039443:+1793 | Msa1458210:intergenic |
| AGTCTCAAGGGAAAGAGTAC+TGG | 0.538575 | tig0039443:-1758 | Msa1458210:CDS |
| GAAAACCAGCCGACTGAACA+AGG | 0.548242 | tig0039443:-2236 | Msa1458210:intron |
| TTGGAAGAGCAAAGAAGAAG+AGG | 0.552231 | tig0039443:+4189 | Msa1458210:intergenic |
| GTGGCAGATGGAGAAAGAAT+GGG | 0.553122 | tig0039443:-1483 | Msa1458210:CDS |
| TTACAAATCTGGGTGGCAGA+TGG | 0.553483 | tig0039443:-1495 | Msa1458210:CDS |
| GAAGACTCGAAATGAAAGCT+GGG | 0.554193 | tig0039443:+1896 | Msa1458210:intergenic |
| AGCTCTTTCACGGATGGCAC+GGG | 0.560125 | tig0039443:+1799 | Msa1458210:intergenic |
| GAAACTGGTTACTGTGGGTA+TGG | 0.560524 | tig0039443:-1551 | Msa1458210:CDS |
| TATTGAGAATGAAGATAATG+AGG | 0.560776 | tig0039443:-2050 | Msa1458210:CDS |
| TCATGAGATACGAAAGAAGA+TGG | 0.563924 | tig0039443:-1085 | Msa1458210:CDS |
| CATATCTTAGGTTTCCGCAC+AGG | 0.564144 | tig0039443:-929 | Msa1458210:three_prime_UTR |
| ATAGGAAGAATATGAGGAAG+CGG | 0.564756 | tig0039443:-2075 | Msa1458210:CDS |
| TTGAAATCTAGAATAGAAGA+CGG | 0.567643 | tig0039443:+4137 | Msa1458210:intergenic |
| GGTGAGGATGCGGAAGAGGA+AGG | 0.573050 | tig0039443:-1422 | Msa1458210:CDS |
| AAATGACAGAACAAAAGAGA+GGG | 0.580612 | tig0039443:+991 | Msa1458210:intergenic |
| CTGTTAATAGGAAGAATATG+AGG | 0.583376 | tig0039443:-2081 | Msa1458210:CDS |
| GGGATGAAGCTGAGAAAGCA+AGG | 0.584805 | tig0039443:-1463 | Msa1458210:CDS |
| TCCCAAAATATATCTTGTAG+TGG | 0.585918 | tig0039443:-873 | Msa1458210:three_prime_UTR |
| TACAAGGAAACTGGTTACTG+TGG | 0.587264 | tig0039443:-1557 | Msa1458210:CDS |
| ACAATTGCCAGTGAAAAGGC+TGG | 0.588175 | tig0039443:-1662 | Msa1458210:CDS |
| TTATACATACCTTGTTCAGT+CGG | 0.588673 | tig0039443:+2227 | Msa1458210:intergenic |
| AAGAAAATTCGAAGCAAGCA+AGG | 0.590196 | tig0039443:-4115 | Msa1458210:intron |
| GATGAGATTGGCTGCAGGTG+AGG | 0.590274 | tig0039443:-1438 | Msa1458210:CDS |
| TGAAATCTAGAATAGAAGAC+GGG | 0.599772 | tig0039443:+4138 | Msa1458210:intergenic |
| GAAAAGGCTGGTGGGTCACA+CGG | 0.600903 | tig0039443:-1650 | Msa1458210:CDS |
| AGGAAGATGAGATTGGCTGC+AGG | 0.603143 | tig0039443:-1443 | Msa1458210:CDS |
| ATTGGCTGCAGGTGAGGATG+CGG | 0.603342 | tig0039443:-1432 | Msa1458210:CDS |
| ATTGCCAGTGAAAAGGCTGG+TGG | 0.607353 | tig0039443:-1659 | Msa1458210:CDS |
| AAAATGACAGAACAAAAGAG+AGG | 0.617311 | tig0039443:+990 | Msa1458210:intergenic |
| GATACGAAAGAAGATGGCTG+AGG | 0.623889 | tig0039443:-1079 | Msa1458210:CDS |
| TTGCCAGTGAAAAGGCTGGT+GGG | 0.630138 | tig0039443:-1658 | Msa1458210:CDS |
| CAAGCGACTGAGAGTCTCAA+GGG | 0.630489 | tig0039443:-1770 | Msa1458210:CDS |
| ACAGAAGTAGTGCTTACACT+TGG | 0.630927 | tig0039443:+1310 | Msa1458210:intergenic |
| GCAAGCGACTGAGAGTCTCA+AGG | 0.636269 | tig0039443:-1771 | Msa1458210:CDS |
| GGGAAAGAGTACTGGTTCCG+AGG | 0.640397 | tig0039443:-1750 | Msa1458210:CDS |
| ACAAGGAAACTGGTTACTGT+GGG | 0.647981 | tig0039443:-1556 | Msa1458210:CDS |
| TGTAAGTTTATGCATGATCG+AGG | 0.650874 | tig0039443:-1521 | Msa1458210:CDS |
| TTATCAGCCAGATATATGCA+AGG | 0.656472 | tig0039443:-1582 | Msa1458210:CDS |
| AATGACAGAACAAAAGAGAG+GGG | 0.684921 | tig0039443:+992 | Msa1458210:intergenic |
| AGAGCTCTTCGAAGAGCCGG+TGG | 0.686462 | tig0039443:+1952 | Msa1458210:intergenic |
| GAGGATGTAAAATTATACAA+GGG | 0.688297 | tig0039443:-1731 | Msa1458210:CDS |
| ATGTGAGCCGAAGCCCTGAG+AGG | 0.689295 | tig0039443:+1626 | Msa1458210:intergenic |
| CAAAATTGACAAGACCTGTG+CGG | 0.715778 | tig0039443:+915 | Msa1458210:intergenic |
| GAGGTGATTACAAATCTGGG+TGG | 0.758440 | tig0039443:-1502 | Msa1458210:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTCTTTTTATATGATTTT+TGG | - | tig0039443:2325-2344 | Msa1458210:intron | 10.0% |
| !! | ATAGTATAAATAATAATGTA+GGG | + | tig0039443:2705-2724 | Msa1458210:intergenic | 10.0% |
| !! | TATAGTATAAATAATAATGT+AGG | + | tig0039443:2706-2725 | Msa1458210:intergenic | 10.0% |
| !!! | TTCTTTTTTTTTTTGTGTTT+GGG | - | tig0039443:1284-1303 | Msa1458210:intron | 15.0% |
| !!! | AAAATAGAAGACTTATTTTA+AGG | - | tig0039443:1331-1350 | Msa1458210:CDS | 15.0% |
| !! | TATTATGATAAGTAATAACA+TGG | + | tig0039443:1385-1404 | Msa1458210:intergenic | 15.0% |
| !!! | AAATATATTGATGACATTTA+GGG | + | tig0039443:2559-2578 | Msa1458210:intergenic | 15.0% |
| !!! | GTTCTTTTTTTTTTTGTGTT+TGG | - | tig0039443:1283-1302 | Msa1458210:intron | 20.0% |
| !!! | TCTTTTTTTTTTTGTGTTTG+GGG | - | tig0039443:1285-1304 | Msa1458210:intron | 20.0% |
| !!! | TCTTCTATTTTGCTAAAATA+TGG | + | tig0039443:1322-1341 | Msa1458210:intergenic | 20.0% |
| !! | ATAATAGTAGACTTATTTGA+TGG | - | tig0039443:1399-1418 | Msa1458210:CDS | 20.0% |
| !! | ACAAATTTCTCATTCATATA+TGG | - | tig0039443:1460-1479 | Msa1458210:CDS | 20.0% |
| !!! | GATCAAAAGTATCATTAATA+TGG | + | tig0039443:2027-2046 | Msa1458210:intergenic | 20.0% |
| !! | TGCATTATAAATCTATTTGA+TGG | - | tig0039443:2509-2528 | Msa1458210:intron | 20.0% |
| !!! | GAAATATATTGATGACATTT+AGG | + | tig0039443:2560-2579 | Msa1458210:intergenic | 20.0% |
| !!! | AGACTCAAATTGAATTATTT+TGG | + | tig0039443:2645-2664 | Msa1458210:intergenic | 20.0% |
| !!! | TATAGTGTTATTTCTCATAT+TGG | - | tig0039443:2722-2741 | Msa1458210:intron | 20.0% |
| !! | AGAAAAAAAAAGGTTAATGA+TGG | + | tig0039443:2905-2924 | Msa1458210:intergenic | 20.0% |
| !! | CAATAATTATACAGATCATA+AGG | - | tig0039443:3342-3361 | Msa1458210:intron | 20.0% |
| !! | TTGAAATCTAGAATAGAAGA+CGG | + | tig0039443:913-932 | Msa0981650:intergenic | 25.0% |
| !!! | TCTTATGTTTTTGTTGTTCT+GGG | - | tig0039443:978-997 | Msa1458210:three_prime_UTR | 25.0% |
| ! | CGAAATCTAAAAACGAATTA+GGG | + | tig0039443:1006-1025 | Msa1458210:intergenic | 25.0% |
| ! | TCGAAATCTAAAAACGAATT+AGG | + | tig0039443:1007-1026 | Msa1458210:intergenic | 25.0% |
| ! | GAAATTAAAACGCAGAAATA+TGG | + | tig0039443:1091-1110 | Msa1458210:intergenic | 25.0% |
| ! | TCTATAAGATGATGATTTCT+GGG | - | tig0039443:1119-1138 | Msa1458210:CDS | 25.0% |
| !!! | AGACTTATTTTAAGGTTTCT+AGG | - | tig0039443:1339-1358 | Msa1458210:CDS | 25.0% |
| !!! | GATTTTTGAAAGTAGATAAG+AGG | + | tig0039443:1493-1512 | Msa1458210:intergenic | 25.0% |
| ! | GGATTTAATAATACATATCC+TGG | - | tig0039443:1599-1618 | Msa1458210:CDS | 25.0% |
| ! | AATAATACATATCCTGGATA+AGG | - | tig0039443:1605-1624 | Msa1458210:CDS | 25.0% |
| !! | TGATCTGGTTTAACAATTAT+AGG | - | tig0039443:1768-1787 | Msa1458210:CDS | 25.0% |
| ! | TTAACAATTATAGGACATGT+TGG | - | tig0039443:1777-1796 | Msa1458210:CDS | 25.0% |
| ! | TACTGTCATACTATCAAAAT+GGG | + | tig0039443:2057-2076 | Msa1458210:intergenic | 25.0% |
| ! | TTACTGTCATACTATCAAAA+TGG | + | tig0039443:2058-2077 | Msa1458210:intergenic | 25.0% |
| !! | TTTGATAGTATGACAGTAAT+TGG | - | tig0039443:2059-2078 | Msa1458210:CDS | 25.0% |
| !! | TTGATAGTATGACAGTAATT+GGG | - | tig0039443:2060-2079 | Msa1458210:CDS | 25.0% |
| !!! | GATAGACCATTTTTTGTTTA+AGG | - | tig0039443:2275-2294 | Msa1458210:exon | 25.0% |
| ! | CATGAAGAGAAAAATTTACT+CGG | + | tig0039443:2612-2631 | Msa1458210:intergenic | 25.0% |
| ! | TTCAATTTGAGTCTGAATTT+CGG | - | tig0039443:2651-2670 | Msa1458210:intron | 25.0% |
| !! | TCTCATATTGGTAATTGATT+TGG | - | tig0039443:2734-2753 | Msa1458210:intron | 25.0% |
| !! | TTTTACTATGGAAAATTCTG+AGG | - | tig0039443:2777-2796 | Msa1458210:intron | 25.0% |
| ! | TATTGAGAATGAAGATAATG+AGG | - | tig0039443:2997-3016 | Msa1458210:intron | 25.0% |
| !! | AATAAGTTATTCTTTTCCAC+CGG | - | tig0039443:3079-3098 | Msa1458210:intron | 25.0% |
| !! | CTTGTATAATTTTACATCCT+CGG | + | tig0039443:3317-3336 | Msa1458210:intergenic | 25.0% |
| ! | GAGGATGTAAAATTATACAA+GGG | - | tig0039443:3316-3335 | Msa1458210:intron | 25.0% |
| !!! | CTTATTTGCTTTGAAGTTAA+GGG | + | tig0039443:3786-3805 | Msa1458210:intergenic | 25.0% |
| !!! | ACTTATTTGCTTTGAAGTTA+AGG | + | tig0039443:3787-3806 | Msa1458210:intergenic | 25.0% |
| ! | AGAAGTTAGGCATAATTAAA+AGG | + | tig0039443:3860-3879 | Msa1458210:intergenic | 25.0% |
| !!! | TGTCATTTTTAACTGTCAAA+TGG | - | tig0039443:4071-4090 | Msa1458210:intron | 25.0% |
| !!! | TTGAGTTGAAAACATATCTT+AGG | - | tig0039443:4106-4125 | Msa1458210:intron | 25.0% |
| !! | TCCACTACAAGATATATTTT+GGG | + | tig0039443:4178-4197 | Msa1458210:intergenic | 25.0% |
| !! | TTCCACTACAAGATATATTT+TGG | + | tig0039443:4179-4198 | Msa1458210:intergenic | 25.0% |
| !! | TGTTTGAAATAGTATGTTTG+TGG | - | tig0039443:4209-4228 | Msa1458210:five_prime_UTR | 25.0% |
| ! | TGAAATCTAGAATAGAAGAC+GGG | + | tig0039443:912-931 | Msa0981650:intergenic | 30.0% |
| !!! | CTCTTATGTTTTTGTTGTTC+TGG | - | tig0039443:977-996 | Msa1458210:three_prime_UTR | 30.0% |
| CTCTATAAGATGATGATTTC+TGG | - | tig0039443:1118-1137 | Msa1458210:CDS | 30.0% | |
| AAATCGAAACATCCTATGTT+CGG | + | tig0039443:1156-1175 | Msa1458210:intergenic | 30.0% | |
| ! | TATTTCGATTTGTTTCGATC+AGG | - | tig0039443:1187-1206 | Msa1458210:intron | 30.0% |
| ! | TTGTTGCTGTTCTTATCTAT+AGG | - | tig0039443:1228-1247 | Msa1458210:intron | 30.0% |
| CAAATAGGATGGCTATTATT+TGG | + | tig0039443:1427-1446 | Msa1458210:intergenic | 30.0% | |
| CAAATAATAGCCATCCTATT+TGG | - | tig0039443:1425-1444 | Msa1458210:CDS | 30.0% | |
| CAAAGTCTTCTTAAATACCA+TGG | - | tig0039443:1523-1542 | Msa1458210:CDS | 30.0% | |
| ! | TTTTCCACTATGTATTTAGC+AGG | - | tig0039443:1578-1597 | Msa1458210:CDS | 30.0% |
| AAATCCTGCTAAATACATAG+TGG | + | tig0039443:1585-1604 | Msa1458210:intergenic | 30.0% | |
| TTTGGTTATCTATGATGATC+TGG | - | tig0039443:1753-1772 | Msa1458210:CDS | 30.0% | |
| ! | AACATCCCTTGCATTAATTT+TGG | - | tig0039443:1828-1847 | Msa1458210:CDS | 30.0% |
| CTCAACCAAAATTAATGCAA+GGG | + | tig0039443:1836-1855 | Msa1458210:intergenic | 30.0% | |
| !!! | CTTGCATTAATTTTGGTTGA+GGG | - | tig0039443:1835-1854 | Msa1458210:CDS | 30.0% |
| CTAGCTTATATCACCTAAAA+TGG | + | tig0039443:1863-1882 | Msa1458210:intergenic | 30.0% | |
| ! | TAATGATACTTTTGATCACC+TGG | - | tig0039443:2030-2049 | Msa1458210:CDS | 30.0% |
| ACTGTCATACTATCAAAATG+GGG | + | tig0039443:2056-2075 | Msa1458210:intergenic | 30.0% | |
| TTGTATCACAAAAATCGAAC+TGG | - | tig0039443:2158-2177 | Msa1458210:intron | 30.0% | |
| GGCATATAATTCTTCCATAT+TGG | - | tig0039443:2179-2198 | Msa1458210:intron | 30.0% | |
| !! | GTGTTTCTACCATTATTTTG+TGG | - | tig0039443:2235-2254 | Msa1458210:intron | 30.0% |
| AAAATGGTCTATCCATTGAA+AGG | + | tig0039443:2268-2287 | Msa1458210:intergenic | 30.0% | |
| CAGAGACCTTAAACAAAAAA+TGG | + | tig0039443:2284-2303 | Msa1458210:intergenic | 30.0% | |
| CAAACATTAAGTACAAGTTC+AGG | + | tig0039443:2486-2505 | Msa1458210:intergenic | 30.0% | |
| TCAATTTGAGTCTGAATTTC+GGG | - | tig0039443:2652-2671 | Msa1458210:intron | 30.0% | |
| !! | TGAATTTCGGGTTTAGTTAT+TGG | - | tig0039443:2664-2683 | Msa1458210:intron | 30.0% |
| TTATACATACCTTGTTCAGT+CGG | + | tig0039443:2823-2842 | Msa1458210:intergenic | 30.0% | |
| GATGGTACAAAAAAATGTAG+AGG | + | tig0039443:2887-2906 | Msa1458210:intergenic | 30.0% | |
| ACAAACGCGTAGAAAAAAAA+AGG | + | tig0039443:2915-2934 | Msa1458210:intergenic | 30.0% | |
| TCTTCAGAAAACCTGTTAAT+AGG | - | tig0039443:2954-2973 | Msa1458210:intron | 30.0% | |
| CTCATATTCTTCCTATTAAC+AGG | + | tig0039443:2968-2987 | Msa1458210:intergenic | 30.0% | |
| CTGTTAATAGGAAGAATATG+AGG | - | tig0039443:2966-2985 | Msa1458210:intron | 30.0% | |
| TGTTCAGAAAAAGAACATGA+AGG | - | tig0039443:3051-3070 | Msa1458210:intron | 30.0% | |
| CGAGGATGTAAAATTATACA+AGG | - | tig0039443:3315-3334 | Msa1458210:intron | 30.0% | |
| AATTATACAGATCATAAGGC+TGG | - | tig0039443:3346-3365 | Msa1458210:intron | 30.0% | |
| TTGTAATCCTTGCATATATC+TGG | + | tig0039443:3475-3494 | Msa1458210:intergenic | 30.0% | |
| AGATATATGCAAGGATTACA+AGG | - | tig0039443:3474-3493 | Msa1458210:intron | 30.0% | |
| AAGTAAAATGAGCAGAAGTT+AGG | + | tig0039443:3873-3892 | Msa1458210:intergenic | 30.0% | |
| AAATGACAGAACAAAAGAGA+GGG | + | tig0039443:4059-4078 | Msa1458210:intergenic | 30.0% | |
| AAAATGACAGAACAAAAGAG+AGG | + | tig0039443:4060-4079 | Msa1458210:intergenic | 30.0% | |
| TCCCAAAATATATCTTGTAG+TGG | - | tig0039443:4174-4193 | Msa1458210:five_prime_UTR | 30.0% | |
| AAGAGGAAGAAAGTTGCAAA+GGG | + | tig0039443:821-840 | Msa0981650:intergenic | 35.0% | |
| AAAGAGGAAGAAAGTTGCAA+AGG | + | tig0039443:822-841 | Msa0981650:intergenic | 35.0% | |
| ! | GCTTAGAGAAGAATGGTTTT+TGG | + | tig0039443:880-899 | Msa0981650:intergenic | 35.0% |
| AAGAAAATTCGAAGCAAGCA+AGG | - | tig0039443:932-951 | Msa1458210:three_prime_UTR | 35.0% | |
| AACAAACCCAGAAATCGAAT+TGG | + | tig0039443:1213-1232 | Msa1458210:intergenic | 35.0% | |
| CTTCTTAAATACCATGGAAG+TGG | - | tig0039443:1529-1548 | Msa1458210:CDS | 35.0% | |
| !! | TCTTGTTATTACCACTTCCA+TGG | + | tig0039443:1543-1562 | Msa1458210:intergenic | 35.0% |
| GTCAATTCCACTAGAAATTG+AGG | - | tig0039443:1639-1658 | Msa1458210:CDS | 35.0% | |
| TGAGCATAATTCTCAAGACA+CGG | - | tig0039443:1722-1741 | Msa1458210:CDS | 35.0% | |
| CCTCAACCAAAATTAATGCA+AGG | + | tig0039443:1837-1856 | Msa1458210:intergenic | 35.0% | |
| !!! | CCTTGCATTAATTTTGGTTG+AGG | - | tig0039443:1834-1853 | Msa1458210:CDS | 35.0% |
| TGATATAAGCTAGCTAGCAA+TGG | - | tig0039443:1870-1889 | Msa1458210:CDS | 35.0% | |
| GGCTCAATCTAGACTAATAA+AGG | + | tig0039443:1901-1920 | Msa1458210:intergenic | 35.0% | |
| AAGTTCCATAGAACCAAAGT+CGG | + | tig0039443:2210-2229 | Msa1458210:intergenic | 35.0% | |
| ! | ATCGTGACAGCTTTTTACTA+TGG | - | tig0039443:2765-2784 | Msa1458210:intron | 35.0% |
| ATAGGAAGAATATGAGGAAG+CGG | - | tig0039443:2972-2991 | Msa1458210:intron | 35.0% | |
| TTATCAGCCAGATATATGCA+AGG | - | tig0039443:3465-3484 | Msa1458210:intron | 35.0% | |
| TGTAAGTTTATGCATGATCG+AGG | - | tig0039443:3526-3545 | Msa1458210:intron | 35.0% | |
| ATCGAGGTGATTACAAATCT+GGG | - | tig0039443:3542-3561 | Msa1458210:intron | 35.0% | |
| ACATTAAAAATGCCAAGCGT+AGG | + | tig0039443:3939-3958 | Msa1458210:intergenic | 35.0% | |
| ! | TACGCTTGGCATTTTTAATG+TGG | - | tig0039443:3938-3957 | Msa1458210:intron | 35.0% |
| TCATGAGATACGAAAGAAGA+TGG | - | tig0039443:3962-3981 | Msa1458210:intron | 35.0% | |
| CATTGTCTCATTGATCGTAT+TGG | + | tig0039443:4008-4027 | Msa1458210:intergenic | 35.0% | |
| CAATGACTATGTTTGCTTCT+TGG | - | tig0039443:4023-4042 | Msa1458210:intron | 35.0% | |
| AATGACAGAACAAAAGAGAG+GGG | + | tig0039443:4058-4077 | Msa1458210:intergenic | 35.0% | |
| !!! | CGTTTTCTGGGTTTTGAAAG+AGG | + | tig0039443:838-857 | Msa0981650:intergenic | 40.0% |
| !!! | AAGAAGAAGAGGCGTTTTCT+GGG | + | tig0039443:850-869 | Msa0981650:intergenic | 40.0% |
| !!! | AAAGAAGAAGAGGCGTTTTC+TGG | + | tig0039443:851-870 | Msa0981650:intergenic | 40.0% |
| TTGGAAGAGCAAAGAAGAAG+AGG | + | tig0039443:861-880 | Msa0981650:intergenic | 40.0% | |
| CTGTCTTGCTTAGAGAAGAA+TGG | + | tig0039443:887-906 | Msa0981650:intergenic | 40.0% | |
| !! | ACTGTGTTTGTTGCGTTTTC+TGG | - | tig0039443:1037-1056 | Msa1458210:three_prime_UTR | 40.0% |
| ATCAGGCCAATTCGATTTCT+GGG | - | tig0039443:1204-1223 | Msa1458210:intron | 40.0% | |
| !!! | TTTTTTGTGTTTGGGGATGC+TGG | - | tig0039443:1292-1311 | Msa1458210:CDS | 40.0% |
| ACAGAGATGTCCAAATAGGA+TGG | + | tig0039443:1438-1457 | Msa1458210:intergenic | 40.0% | |
| GTTCACAGAGATGTCCAAAT+AGG | + | tig0039443:1442-1461 | Msa1458210:intergenic | 40.0% | |
| CAAGACACGGTTGTTAACTT+TGG | - | tig0039443:1735-1754 | Msa1458210:CDS | 40.0% | |
| ! | TTGGTTGAGGGAACCATTTT+AGG | - | tig0039443:1847-1866 | Msa1458210:CDS | 40.0% |
| TGTTAGAGCAATGGAACTCA+AGG | + | tig0039443:1922-1941 | Msa1458210:intergenic | 40.0% | |
| TTCCATTGCTCTAACATTGC+AGG | - | tig0039443:1926-1945 | Msa1458210:CDS | 40.0% | |
| TCCATTGCTCTAACATTGCA+GGG | - | tig0039443:1927-1946 | Msa1458210:CDS | 40.0% | |
| TGTGTTGTCTTGCTACAGTT+AGG | - | tig0039443:2380-2399 | Msa1458210:intron | 40.0% | |
| CGGTGACATGACAAAGAATA+TGG | + | tig0039443:2592-2611 | Msa1458210:intergenic | 40.0% | |
| AAATGAAAGCTGGGTTTCTC+AGG | + | tig0039443:3145-3164 | Msa1458210:intergenic | 40.0% | |
| GAAGACTCGAAATGAAAGCT+GGG | + | tig0039443:3154-3173 | Msa1458210:intergenic | 40.0% | |
| AGAAGACTCGAAATGAAAGC+TGG | + | tig0039443:3155-3174 | Msa1458210:intergenic | 40.0% | |
| TAGCAAAGCAACAGCAACTT+TGG | - | tig0039443:3198-3217 | Msa1458210:intron | 40.0% | |
| CTTGCTTAAGAGCTCTTTCA+CGG | + | tig0039443:3261-3280 | Msa1458210:intergenic | 40.0% | |
| GCAAACAATTGCCAGTGAAA+AGG | - | tig0039443:3381-3400 | Msa1458210:intron | 40.0% | |
| TGCAAGGATTACAAGGAAAC+TGG | - | tig0039443:3481-3500 | Msa1458210:intron | 40.0% | |
| TACAAGGAAACTGGTTACTG+TGG | - | tig0039443:3490-3509 | Msa1458210:intron | 40.0% | |
| ACAAGGAAACTGGTTACTGT+GGG | - | tig0039443:3491-3510 | Msa1458210:intron | 40.0% | |
| GATCGAGGTGATTACAAATC+TGG | - | tig0039443:3541-3560 | Msa1458210:intron | 40.0% | |
| GAAAGCAAGGAAGATGAGAT+TGG | - | tig0039443:3597-3616 | Msa1458210:intron | 40.0% | |
| CGACAAATGAAACACGCAAA+TGG | + | tig0039443:3691-3710 | Msa1458210:intergenic | 40.0% | |
| CATTTGTCGAAACCCATTTG+TGG | - | tig0039443:3702-3721 | Msa1458210:intron | 40.0% | |
| TTGAGACAGGATCCACAAAT+GGG | + | tig0039443:3717-3736 | Msa1458210:intergenic | 40.0% | |
| ACAGAAGTAGTGCTTACACT+TGG | + | tig0039443:3740-3759 | Msa1458210:intergenic | 40.0% | |
| TGACTATGTTTGCTTCTTGG+AGG | - | tig0039443:4026-4045 | Msa1458210:intron | 40.0% | |
| CAAAATTGACAAGACCTGTG+CGG | + | tig0039443:4135-4154 | Msa1458210:intergenic | 40.0% | |
| GATCAGGCCAATTCGATTTC+TGG | - | tig0039443:1203-1222 | Msa1458210:intron | 45.0% | |
| CAACTTATGCTGCCTTATCC+AGG | + | tig0039443:1620-1639 | Msa1458210:intergenic | 45.0% | |
| ! | CTGCATGCCTCAATTTCTAG+TGG | + | tig0039443:1649-1668 | Msa1458210:intergenic | 45.0% |
| !! | AGGACATGTTGGTCTGCTTT+TGG | - | tig0039443:1788-1807 | Msa1458210:CDS | 45.0% |
| ACCCTGCAATGTTAGAGCAA+TGG | + | tig0039443:1931-1950 | Msa1458210:intergenic | 45.0% | |
| CATACTATCAAAATGGGGCC+AGG | + | tig0039443:2051-2070 | Msa1458210:intergenic | 45.0% | |
| ACTCTGTTCCAGATCCTACA+CGG | - | tig0039443:2127-2146 | Msa1458210:intron | 45.0% | |
| ATACAATGACCGATCCGTGT+AGG | + | tig0039443:2144-2163 | Msa1458210:intergenic | 45.0% | |
| CAAAGTCGGCGAAACCAATA+TGG | + | tig0039443:2196-2215 | Msa1458210:intergenic | 45.0% | |
| !! | CATATTGGTTTCGCCGACTT+TGG | - | tig0039443:2194-2213 | Msa1458210:intron | 45.0% |
| !! | TTTCGCCGACTTTGGTTCTA+TGG | - | tig0039443:2202-2221 | Msa1458210:intron | 45.0% |
| GGCGCAAGACCACAAAATAA+TGG | + | tig0039443:2247-2266 | Msa1458210:intergenic | 45.0% | |
| CTTAAGAGCTCTTTCACGGA+TGG | + | tig0039443:3257-3276 | Msa1458210:intergenic | 45.0% | |
| ! | AGTCTCAAGGGAAAGAGTAC+TGG | - | tig0039443:3289-3308 | Msa1458210:intron | 45.0% |
| ACAATTGCCAGTGAAAAGGC+TGG | - | tig0039443:3385-3404 | Msa1458210:intron | 45.0% | |
| GAAACTGGTTACTGTGGGTA+TGG | - | tig0039443:3496-3515 | Msa1458210:intron | 45.0% | |
| GAGGTGATTACAAATCTGGG+TGG | - | tig0039443:3545-3564 | Msa1458210:intron | 45.0% | |
| TTACAAATCTGGGTGGCAGA+TGG | - | tig0039443:3552-3571 | Msa1458210:intron | 45.0% | |
| GTGGCAGATGGAGAAAGAAT+GGG | - | tig0039443:3564-3583 | Msa1458210:intron | 45.0% | |
| GTTGAGACAGGATCCACAAA+TGG | + | tig0039443:3718-3737 | Msa1458210:intergenic | 45.0% | |
| TGCTTACACTTGGTTGAGAC+AGG | + | tig0039443:3730-3749 | Msa1458210:intergenic | 45.0% | |
| ! | CTGTGAGCATTGTGCATTGA+AGG | - | tig0039443:3756-3775 | Msa1458210:intron | 45.0% |
| GATACGAAAGAAGATGGCTG+AGG | - | tig0039443:3968-3987 | Msa1458210:intron | 45.0% | |
| CATATCTTAGGTTTCCGCAC+AGG | - | tig0039443:4118-4137 | Msa1458210:five_prime_UTR | 45.0% | |
| ! | GTTTGTTGCGTGCCGAACAT+AGG | - | tig0039443:1141-1160 | Msa1458210:CDS | 50.0% |
| GTTCCAGATCCTACACGGAT+CGG | - | tig0039443:2132-2151 | Msa1458210:intron | 50.0% | |
| ! | TGTGGTCTTGCGCCTTTCAA+TGG | - | tig0039443:2253-2272 | Msa1458210:CDS | 50.0% |
| !!! | CGGCTGGTTTTCAGCAGATT+TGG | + | tig0039443:2803-2822 | Msa1458210:intergenic | 50.0% |
| GAAAACCAGCCGACTGAACA+AGG | - | tig0039443:2811-2830 | Msa1458210:intron | 50.0% | |
| ACATACCTTGTTCAGTCGGC+TGG | + | tig0039443:2819-2838 | Msa1458210:intergenic | 50.0% | |
| CAAGCGACTGAGAGTCTCAA+GGG | - | tig0039443:3277-3296 | Msa1458210:intron | 50.0% | |
| ATTGCCAGTGAAAAGGCTGG+TGG | - | tig0039443:3388-3407 | Msa1458210:intron | 50.0% | |
| TTGCCAGTGAAAAGGCTGGT+GGG | - | tig0039443:3389-3408 | Msa1458210:intron | 50.0% | |
| GGTGGCAGATGGAGAAAGAA+TGG | - | tig0039443:3563-3582 | Msa1458210:intron | 50.0% | |
| GGGATGAAGCTGAGAAAGCA+AGG | - | tig0039443:3584-3603 | Msa1458210:intron | 50.0% | |
| ! | AGGAAGATGAGATTGGCTGC+AGG | - | tig0039443:3604-3623 | Msa1458210:intron | 50.0% |
| TGACCGATCCGTGTAGGATC+TGG | + | tig0039443:2138-2157 | Msa1458210:intergenic | 55.0% | |
| TGCAGAGCTCTTCGAAGAGC+CGG | + | tig0039443:3101-3120 | Msa1458210:intergenic | 55.0% | |
| AGCTCTTTCACGGATGGCAC+GGG | + | tig0039443:3251-3270 | Msa1458210:intergenic | 55.0% | |
| GAGCTCTTTCACGGATGGCA+CGG | + | tig0039443:3252-3271 | Msa1458210:intergenic | 55.0% | |
| GCAAGCGACTGAGAGTCTCA+AGG | - | tig0039443:3276-3295 | Msa1458210:intron | 55.0% | |
| !! | GGGAAAGAGTACTGGTTCCG+AGG | - | tig0039443:3297-3316 | Msa1458210:intron | 55.0% |
| ! | TGACCCACCAGCCTTTTCAC+TGG | + | tig0039443:3395-3414 | Msa1458210:intergenic | 55.0% |
| ! | GAAAAGGCTGGTGGGTCACA+CGG | - | tig0039443:3397-3416 | Msa1458210:intron | 55.0% |
| ! | GATGAGATTGGCTGCAGGTG+AGG | - | tig0039443:3609-3628 | Msa1458210:intron | 55.0% |
| ATTGGCTGCAGGTGAGGATG+CGG | - | tig0039443:3615-3634 | Msa1458210:intron | 55.0% | |
| GTCTGCAATCAGCCTACGCT+TGG | - | tig0039443:3924-3943 | Msa1458210:intron | 55.0% | |
| AGAGCTCTTCGAAGAGCCGG+TGG | + | tig0039443:3098-3117 | Msa1458210:intergenic | 60.0% | |
| TGGGTCACACGGTCCTCTCA+GGG | - | tig0039443:3408-3427 | Msa1458210:intron | 60.0% | |
| ACACGGTCCTCTCAGGGCTT+CGG | - | tig0039443:3414-3433 | Msa1458210:intron | 60.0% | |
| ATGTGAGCCGAAGCCCTGAG+AGG | + | tig0039443:3424-3443 | Msa1458210:intergenic | 60.0% | |
| TGCAGGTGAGGATGCGGAAG+AGG | - | tig0039443:3621-3640 | Msa1458210:intron | 60.0% | |
| GGTGAGGATGCGGAAGAGGA+AGG | - | tig0039443:3625-3644 | Msa1458210:intron | 60.0% | |
| GTGGGTCACACGGTCCTCTC+AGG | - | tig0039443:3407-3426 | Msa1458210:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0039443 | gene | 785 | 4284 | 785 | ID=Msa1458210;Name=Msa1458210 |
| tig0039443 | mRNA | 785 | 4284 | 785 | ID=Msa1458210-mRNA-1;Parent=Msa1458210;Name=Msa1458210-mRNA-1;_AED=0.14;_eAED=0.14;_QI=178|1|1|1|0.66|0.75|4|286|327 |
| tig0039443 | exon | 785 | 1172 | 785 | ID=Msa1458210-mRNA-1:exon:21643;Parent=Msa1458210-mRNA-1 |
| tig0039443 | exon | 1292 | 2124 | 1292 | ID=Msa1458210-mRNA-1:exon:21642;Parent=Msa1458210-mRNA-1 |
| tig0039443 | exon | 2237 | 2294 | 2237 | ID=Msa1458210-mRNA-1:exon:21641;Parent=Msa1458210-mRNA-1 |
| tig0039443 | exon | 4116 | 4284 | 4116 | ID=Msa1458210-mRNA-1:exon:21640;Parent=Msa1458210-mRNA-1 |
| tig0039443 | five_prime_UTR | 4116 | 4284 | 4116 | ID=Msa1458210-mRNA-1:five_prime_utr;Parent=Msa1458210-mRNA-1 |
| tig0039443 | five_prime_UTR | 2286 | 2294 | 2286 | ID=Msa1458210-mRNA-1:five_prime_utr;Parent=Msa1458210-mRNA-1 |
| tig0039443 | CDS | 2237 | 2285 | 2237 | ID=Msa1458210-mRNA-1:cds;Parent=Msa1458210-mRNA-1 |
| tig0039443 | CDS | 1292 | 2124 | 1292 | ID=Msa1458210-mRNA-1:cds;Parent=Msa1458210-mRNA-1 |
| tig0039443 | CDS | 1071 | 1172 | 1071 | ID=Msa1458210-mRNA-1:cds;Parent=Msa1458210-mRNA-1 |
| tig0039443 | three_prime_UTR | 785 | 1070 | 785 | ID=Msa1458210-mRNA-1:three_prime_utr;Parent=Msa1458210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
