AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0093960

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0093960 MtrunA17_Chr2g0323971 86.577 298 12 1 1 298 1 270 3.89e-175 484
Msa0093960 MtrunA17_Chr7g0237741 68.092 304 54 5 1 298 1 267 8.76e-124 354
Msa0093960 MtrunA17_Chr4g0075481 37.097 124 73 2 123 244 36 156 2.82e-18 85.1
Msa0093960 MtrunA17_Chr2g0316221 30.935 139 85 2 129 267 465 592 2.21e-16 79.3
Msa0093960 MtrunA17_Chr3g0124261 34.127 126 74 2 129 254 459 575 4.78e-15 75.5
Msa0093960 MtrunA17_Chr4g0027201 34.247 146 80 3 125 262 401 538 7.14e-15 74.7
Msa0093960 MtrunA17_Chr2g0304261 35.043 117 71 2 123 237 37 150 8.89e-15 74.7
Msa0093960 MtrunA17_Chr8g0393041 33.607 122 74 1 126 247 479 593 3.20e-14 72.8
Msa0093960 MtrunA17_Chr1g0149561 33.913 115 70 4 126 237 40 151 3.79e-14 72.8
Msa0093960 MtrunA17_Chr3g0115681 30.061 163 90 5 131 281 429 579 3.88e-14 72.8
Msa0093960 MtrunA17_Chr8g0339141 38.462 117 64 1 126 234 402 518 4.14e-14 72.4
Msa0093960 MtrunA17_Chr5g0425741 31.818 154 91 4 129 282 447 586 6.83e-14 72.0
Msa0093960 MtrunA17_Chr2g0311461 32.710 107 67 2 130 235 5 107 1.61e-13 69.3
Msa0093960 MtrunA17_Chr7g0255551 33.077 130 76 2 116 234 364 493 4.45e-13 69.3
Msa0093960 MtrunA17_Chr8g0377771 34.591 159 86 5 93 234 357 514 1.65e-12 67.8
Msa0093960 MtrunA17_Chr1g0152361 33.333 147 87 2 126 261 227 373 3.92e-12 66.2
Msa0093960 MtrunA17_Chr7g0234801 37.607 117 65 2 126 234 394 510 6.26e-12 65.9
Msa0093960 MtrunA17_Chr5g0398901 30.000 110 70 1 126 235 2 104 7.50e-12 65.9
Msa0093960 MtrunA17_Chr3g0097231 30.000 140 89 2 120 259 5 135 2.54e-11 63.9
Msa0093960 MtrunA17_Chr4g0019501 28.682 129 82 1 126 244 184 312 2.75e-11 63.5
Msa0093960 MtrunA17_Chr4g0025271 32.174 115 76 1 130 242 107 221 3.49e-11 63.5
Msa0093960 MtrunA17_Chr4g0050371 31.667 120 75 1 130 249 492 604 3.64e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0093960 AT4G30480.2 58.781 279 75 5 19 297 38 276 2.41e-105 308
Msa0093960 AT4G30480.1 48.544 206 66 5 19 224 38 203 2.05e-53 173
Msa0093960 AT4G30480.3 41.358 162 55 5 19 180 38 159 8.04e-27 103
Msa0093960 AT1G62390.1 36.800 125 74 2 123 245 48 169 1.80e-17 83.2
Msa0093960 AT3G58620.2 30.172 116 74 1 128 243 451 559 1.04e-14 74.7
Msa0093960 AT3G58620.1 30.172 116 74 1 128 243 451 559 1.47e-14 74.3
Msa0093960 AT3G25230.2 36.196 163 86 4 117 268 388 543 3.07e-14 73.2
Msa0093960 AT3G25230.1 36.196 163 86 4 117 268 388 543 3.59e-14 73.2
Msa0093960 AT2G25290.2 31.200 125 81 2 125 247 51 172 3.24e-13 70.5
Msa0093960 AT2G25290.3 31.200 125 81 2 125 247 51 172 3.24e-13 70.5
Msa0093960 AT2G25290.4 31.200 125 81 2 125 247 51 172 3.24e-13 70.5
Msa0093960 AT2G25290.1 31.200 125 81 2 125 247 51 172 3.24e-13 70.5
Msa0093960 AT4G32070.2 33.333 123 77 2 125 245 50 169 3.29e-13 70.5
Msa0093960 AT4G32070.1 33.333 123 77 2 125 245 50 169 3.29e-13 70.5
Msa0093960 AT2G42580.1 29.565 115 74 1 129 243 461 568 4.67e-13 69.7
Msa0093960 AT1G56090.1 33.645 107 66 2 130 235 10 112 5.07e-13 68.2
Msa0093960 AT1G53300.1 27.434 113 75 1 129 241 468 573 6.42e-13 69.3
Msa0093960 AT5G65160.1 31.193 109 68 1 128 236 472 573 7.87e-13 68.9
Msa0093960 AT1G56090.2 33.645 107 66 2 130 235 84 186 1.19e-12 67.8
Msa0093960 AT4G12400.2 34.545 110 65 1 126 235 2 104 1.74e-12 68.2
Msa0093960 AT4G12400.1 34.545 110 65 1 126 235 2 104 1.77e-12 67.8
Msa0093960 AT3G54010.1 29.927 137 84 3 111 235 381 517 3.97e-12 67.0
Msa0093960 AT3G21640.1 33.577 137 70 5 126 248 179 308 4.40e-12 66.2
Msa0093960 AT1G56440.1 26.163 172 104 4 122 289 80 232 5.83e-12 66.2
Msa0093960 AT1G56440.2 26.163 172 104 4 122 289 70 222 5.85e-12 66.2
Msa0093960 AT3G54010.2 29.927 137 84 3 111 235 291 427 5.89e-12 66.2
Msa0093960 AT5G21990.1 26.857 175 110 4 81 250 68 229 2.08e-11 64.7
Msa0093960 AT1G62740.1 27.119 118 79 1 126 243 382 492 3.49e-11 63.9
Msa0093960 AT5G20360.3 30.328 122 80 3 125 244 115 233 4.65e-11 63.9
Msa0093960 AT5G20360.1 30.328 122 80 3 125 244 125 243 4.71e-11 63.9
Msa0093960 AT5G20360.2 30.328 122 80 3 125 244 125 243 4.71e-11 63.9
Msa0093960 AT5G20360.7 30.328 122 80 3 125 244 65 183 4.99e-11 63.9
Msa0093960 AT5G20360.4 30.328 122 80 3 125 244 65 183 4.99e-11 63.9
Msa0093960 AT5G20360.5 30.328 122 80 3 125 244 35 153 5.79e-11 63.5
Msa0093960 AT5G20360.6 30.328 122 80 3 125 244 35 153 5.79e-11 63.5
Msa0093960 AT5G48570.1 32.143 140 80 2 126 257 410 542 8.67e-11 62.8

Find 90 sgRNAs with CRISPR-Local

Find 371 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTCTCCAACTTGGGTTAT+TGG 0.143411 1_2:+77051874 None:intergenic
TCTCATTCCAACAGTAATTT+TGG 0.148968 1_2:-77047944 Msa0093960:exon
GCCATGGTTTGACGAGTTTA+AGG 0.212606 1_2:-77051928 Msa0093960:CDS
AACTCTCTATTGGGCCGCTT+TGG 0.264239 1_2:-77048023 Msa0093960:CDS
AGATATGGGCAACTCTCTAT+TGG 0.311616 1_2:-77048033 Msa0093960:CDS
GCAAATGAAGCAAAGGTAGA+AGG 0.322186 1_2:-77051030 Msa0093960:CDS
AGGAACCAGTGTTTGGATCT+TGG 0.328792 1_2:+77047973 None:intergenic
TGGAGTGTGCTTTCTGAAAA+TGG 0.332339 1_2:-77050887 Msa0093960:intron
ACTCTCTATTGGGCCGCTTT+GGG 0.341561 1_2:-77048022 Msa0093960:CDS
AGGATTCAATTCTAATGCTT+TGG 0.356837 1_2:+77049800 None:intergenic
TGCAGCAAAACTGAAAGATA+TGG 0.364427 1_2:-77048048 Msa0093960:intron
TAAGGAGTCATGTCACAATT+GGG 0.400229 1_2:-77051910 Msa0093960:CDS
TGTCGAGGAGGAACTGAAAC+AGG 0.406051 1_2:-77052838 Msa0093960:intron
AGCCCCTTGCTGCGGTAAAA+CGG 0.406141 1_2:-77049269 Msa0093960:CDS
TTAAGGAGTCATGTCACAAT+TGG 0.406233 1_2:-77051911 Msa0093960:CDS
GCCCCTTGCTGCGGTAAAAC+GGG 0.412779 1_2:-77049268 Msa0093960:CDS
ACAGAATAGGAACCAGTGTT+TGG 0.413729 1_2:+77047966 None:intergenic
TGATTGCTCCGCCGGCGTCA+TGG 0.413791 1_2:+77052979 None:intergenic
AATCAACCAATGCCCTTTGA+AGG 0.423355 1_2:+77047808 None:intergenic
GCAAGAGAAGGAGAAGGAAC+AGG 0.429865 1_2:-77052907 Msa0093960:CDS
TCCACAGACGAAGGCATGTC+TGG 0.430069 1_2:+77050937 None:intergenic
GATTGCTCCGCCGGCGTCAT+GGG 0.430410 1_2:+77052980 None:intergenic
CCTTCTCTTGCTCTGTATGT+TGG 0.434693 1_2:+77052919 None:intergenic
TCCTATGTATGTCAAAGCTT+TGG 0.435215 1_2:-77049781 Msa0093960:CDS
TGCTCAACCAAAATTACTGT+TGG 0.436068 1_2:+77047937 None:intergenic
TTTCCCAGCTTGATCATTTG+AGG 0.437938 1_2:+77049308 None:intergenic
CGTTGTTCATGCAAGTCACT+AGG 0.462405 1_2:-77047885 Msa0093960:three_prime_UTR
TCATGTCACAATTGGGGATG+AGG 0.469375 1_2:-77051903 Msa0093960:CDS
AATAGAACCTCTCTCCAACT+TGG 0.471022 1_2:+77051866 None:intergenic
GATATGGGCAACTCTCTATT+GGG 0.476887 1_2:-77048032 Msa0093960:CDS
GTCGACGTCGCTGCCGAGAT+CGG 0.477352 1_2:+77053004 None:intergenic
TTCCCAGCTTGATCATTTGA+GGG 0.480120 1_2:+77049309 None:intergenic
CTCGTGTTTGATTGCTCCGC+CGG 0.485562 1_2:+77052971 None:intergenic
GCTGCCGAGATCGGTGTCAC+TGG 0.486340 1_2:+77053013 None:intergenic
TTATTTCCTTCAAAGGGCAT+TGG 0.502526 1_2:-77047814 Msa0093960:three_prime_UTR
GATCCCTCAAATGATCAAGC+TGG 0.505591 1_2:-77049312 Msa0093960:CDS
ACCAAAGCTTTGACATACAT+AGG 0.530413 1_2:+77049780 None:intergenic
GTTGGTTGAAGCTGCGTCGG+AGG 0.530506 1_2:+77053061 None:intergenic
GCAGCAAAACTGAAAGATAT+GGG 0.537722 1_2:-77048047 Msa0093960:intron
ACCGCCAGTGACACCGATCT+CGG 0.539820 1_2:-77053017 Msa0093960:CDS
CACAGCAAACCTCTCGAAGA+TGG 0.542505 1_2:-77053111 Msa0093960:exon
ATAGAACCTCTCTCCAACTT+GGG 0.544668 1_2:+77051867 None:intergenic
TTTCAGTTCCTCCTCGACAA+TGG 0.545793 1_2:+77052842 None:intergenic
ATCCCTCAAATGATCAAGCT+GGG 0.547698 1_2:-77049311 Msa0093960:CDS
AAGATGAAGGAAGAAATGAT+TGG 0.548059 1_2:-77049243 Msa0093960:intron
CTGTTGGAATGAGACAGAAT+AGG 0.550017 1_2:+77047953 None:intergenic
CATGTCACAATTGGGGATGA+GGG 0.550370 1_2:-77051902 Msa0093960:CDS
CAAATGAAGCAAAGGTAGAA+GGG 0.553738 1_2:-77051029 Msa0093960:CDS
GGTTCTCCAATAACCCAAGT+TGG 0.555723 1_2:-77051880 Msa0093960:CDS
AGCACACTCCACGGTTTGCA+TGG 0.556081 1_2:+77050899 None:intergenic
AAAGCCGTCGGAAACGTCGT+TGG 0.556526 1_2:+77053043 None:intergenic
TTGTTGAAGGGAGGTAGCCA+TGG 0.565591 1_2:-77051944 Msa0093960:intron
TTGGTTGAAGCTGCGTCGGA+GGG 0.566073 1_2:+77053062 None:intergenic
TGATTGATTCATCGTGTGAA+GGG 0.567494 1_2:-77047790 Msa0093960:three_prime_UTR
GTCGTTGGTTGAAGCTGCGT+CGG 0.567590 1_2:+77053058 None:intergenic
GTCAAAGCTTTGGTAAGAAG+AGG 0.569077 1_2:-77049771 Msa0093960:CDS
AAATTTGAGCTCACCAGCAA+TGG 0.570176 1_2:+77049713 None:intergenic
GCCGAGATCGGTGTCACTGG+CGG 0.579855 1_2:+77053016 None:intergenic
GATTGATTCATCGTGTGAAG+GGG 0.590091 1_2:-77047789 Msa0093960:three_prime_UTR
GGTTCAAGCAAATGAAGCAA+AGG 0.590887 1_2:-77051037 Msa0093960:CDS
TGATGATGCTTCCATTGTCG+AGG 0.592655 1_2:-77052853 Msa0093960:CDS
GAGCAAAGTCATGAAAGCGT+TGG 0.594662 1_2:-77047919 Msa0093960:three_prime_UTR
GCCAGACATGCCTTCGTCTG+TGG 0.595164 1_2:-77050938 Msa0093960:CDS
GGTAAAACGGGAAAAGATGA+AGG 0.595712 1_2:-77049256 Msa0093960:CDS
TCGGTTAGAGCCCCTTGCTG+CGG 0.599340 1_2:-77049277 Msa0093960:CDS
AAGGAGTCATGTCACAATTG+GGG 0.600424 1_2:-77051909 Msa0093960:CDS
GGAGCAATCAAACACGAGGA+AGG 0.601025 1_2:-77052966 Msa0093960:CDS
TACAGAGCAAGAGAAGGAGA+AGG 0.604815 1_2:-77052913 Msa0093960:CDS
TTGATTGATTCATCGTGTGA+AGG 0.606648 1_2:-77047791 Msa0093960:three_prime_UTR
AATACTAGCTTAATCGACAC+TGG 0.609649 1_2:+77047618 None:intergenic
CATCTTCGAGAGGTTTGCTG+TGG 0.611348 1_2:+77053112 None:intergenic
TCCTTAAACTCGTCAAACCA+TGG 0.612966 1_2:+77051927 None:intergenic
TCAACCAACGACGTTTCCGA+CGG 0.612975 1_2:-77053047 Msa0093960:CDS
CGATTACTACCATCTTCGAG+AGG 0.613293 1_2:+77053102 None:intergenic
GACGTCGACGCCCATGACGC+CGG 0.616077 1_2:-77052990 Msa0093960:CDS
CCAACATACAGAGCAAGAGA+AGG 0.617443 1_2:-77052919 Msa0093960:CDS
CAATAACCCAAGTTGGAGAG+AGG 0.620652 1_2:-77051873 Msa0093960:intron
AGCTTTGGTAAGAAGAGGAG+AGG 0.630745 1_2:-77049766 Msa0093960:CDS
AAGCTGGGAAAGCTATTCGT+CGG 0.635597 1_2:-77049296 Msa0093960:CDS
CGGCGGAGCAATCAAACACG+AGG 0.637847 1_2:-77052970 Msa0093960:CDS
ATGTCACAATTGGGGATGAG+GGG 0.646797 1_2:-77051901 Msa0093960:CDS
TGATGCTTCCATTGTCGAGG+AGG 0.652635 1_2:-77052850 Msa0093960:CDS
GCAGTCCAAGATCCAAACAC+TGG 0.653084 1_2:-77047978 Msa0093960:CDS
GACAATGGAAGCATCATCAG+AGG 0.657180 1_2:+77052857 None:intergenic
GAGCGTATTTCCACAGACGA+AGG 0.658091 1_2:+77050928 None:intergenic
TGTAGATGCAAAGTACGAGG+AGG 0.669056 1_2:-77050995 Msa0093960:CDS
GTCGACGCCCATGACGCCGG+CGG 0.670905 1_2:-77052987 Msa0093960:CDS
ACTGGCGGTTTCAAAGCCGT+CGG 0.679050 1_2:+77053031 None:intergenic
TCAATATGCCATGCAAACCG+TGG 0.698040 1_2:-77050907 Msa0093960:CDS
TGTCTACACTCATCCCAAAG+CGG 0.713084 1_2:+77048009 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTATTAAAAGAAAAAATAAA+AGG + chr1_2:77051280-77051299 None:intergenic 10.0%
!!! ACTTTATTTTTATTTTTTGT+AGG - chr1_2:77051550-77051569 Msa0093960:intron 10.0%
!!! CTTTATTTTTATTTTTTGTA+GGG - chr1_2:77051551-77051570 Msa0093960:intron 10.0%
!!! TTTATTTTTATTTTTTGTAG+GGG - chr1_2:77051552-77051571 Msa0093960:intron 10.0%
!!! TGGTTTATATATATTATTTT+AGG - chr1_2:77052280-77052299 Msa0093960:intron 10.0%
!!! GGTTTATATATATTATTTTA+GGG - chr1_2:77052281-77052300 Msa0093960:intron 10.0%
!!! TTTATTTAAGCTATTTTTTT+AGG - chr1_2:77053044-77053063 Msa0093960:CDS 10.0%
!!! TTATTTAAGCTATTTTTTTA+GGG - chr1_2:77053045-77053064 Msa0093960:CDS 10.0%
!! AAACTAAAAAATTGTATTGA+AGG + chr1_2:77048632-77048651 None:intergenic 15.0%
!!! AATAATGAAAACAATTCTTT+TGG - chr1_2:77049186-77049205 Msa0093960:intron 15.0%
!!! TTTTTAGTTTATTATTCTTC+CGG + chr1_2:77050081-77050100 None:intergenic 15.0%
!!! AATTAAACTTGTTATGTTAT+CGG + chr1_2:77050430-77050449 None:intergenic 15.0%
!!! ATTTTATTTCTACTTGTTTT+TGG - chr1_2:77053172-77053191 Msa0093960:five_prime_UTR 15.0%
!! AAACAGCTTTACTTTATTAT+AGG - chr1_2:77047995-77048014 Msa0093960:CDS 20.0%
!! AAAAATAAGTCAATCCAAAT+GGG + chr1_2:77048050-77048069 None:intergenic 20.0%
!! ATAAGTGCTTATCATATAAA+GGG + chr1_2:77048265-77048284 None:intergenic 20.0%
!! TATAAGTGCTTATCATATAA+AGG + chr1_2:77048266-77048285 None:intergenic 20.0%
!! TAATTTGATGTTTGTTCAAA+CGG - chr1_2:77048297-77048316 Msa0093960:intron 20.0%
!! GATAGTATAAGAATGTAATA+AGG + chr1_2:77048325-77048344 None:intergenic 20.0%
!! AATGATATGAGAGAAAATTA+AGG - chr1_2:77048361-77048380 Msa0093960:intron 20.0%
!! ATGATATGAGAGAAAATTAA+GGG - chr1_2:77048362-77048381 Msa0093960:intron 20.0%
!! AATCACTATTTCAAAAAAGA+TGG + chr1_2:77048493-77048512 None:intergenic 20.0%
!!! TTTTTTAGTTTCCTCATTTA+AGG - chr1_2:77048641-77048660 Msa0093960:intron 20.0%
!!! TTTTTAGTTTCCTCATTTAA+GGG - chr1_2:77048642-77048661 Msa0093960:intron 20.0%
!! TCAAATCAGTATTAAAAAAC+TGG + chr1_2:77049595-77049614 None:intergenic 20.0%
!! AGATAAATATCTTATCTGAT+TGG + chr1_2:77049908-77049927 None:intergenic 20.0%
!! ACATGAATTCAAACATATAA+AGG + chr1_2:77049982-77050001 None:intergenic 20.0%
!!! AACATAACAAGTTTAATTTC+AGG - chr1_2:77050432-77050451 Msa0093960:intron 20.0%
!! AAAACATGTTAAATTGCTTA+TGG + chr1_2:77050497-77050516 None:intergenic 20.0%
!! AATTTACTATAAATTAGCTC+AGG - chr1_2:77050590-77050609 Msa0093960:intron 20.0%
!!! TGAGCTCAAATTTTATAATA+GGG - chr1_2:77051021-77051040 Msa0093960:CDS 20.0%
!! AAGAACTATACATAAAGTAA+AGG + chr1_2:77051119-77051138 None:intergenic 20.0%
!! AAGAAAAAATAAAAGGGTAA+CGG + chr1_2:77051273-77051292 None:intergenic 20.0%
!! AAATAAATAGTTCTTGAGTT+TGG - chr1_2:77051710-77051729 Msa0093960:intron 20.0%
!!! TTAATTTGTGACTTTATGTT+GGG + chr1_2:77052201-77052220 None:intergenic 20.0%
!!! TTTAATTTGTGACTTTATGT+TGG + chr1_2:77052202-77052221 None:intergenic 20.0%
!!! ATTATCGGTTCATTATTTTA+TGG - chr1_2:77052496-77052515 Msa0093960:intron 20.0%
!! TCAAGAAATAATTATGTGTA+AGG + chr1_2:77052656-77052675 None:intergenic 20.0%
!!! TACAATTTTATTTCCTTCAA+AGG - chr1_2:77052903-77052922 Msa0093960:CDS 20.0%
!!! ACAATTTTATTTCCTTCAAA+GGG - chr1_2:77052904-77052923 Msa0093960:CDS 20.0%
!!! TAAGTTTTTGATAGTCTTTT+TGG - chr1_2:77052970-77052989 Msa0093960:CDS 20.0%
!!! AAGTTTTTGATAGTCTTTTT+GGG - chr1_2:77052971-77052990 Msa0093960:CDS 20.0%
! CAAAAATAAGTCAATCCAAA+TGG + chr1_2:77048051-77048070 None:intergenic 25.0%
! TATTATTCTTAAGCTTGTCA+AGG - chr1_2:77048112-77048131 Msa0093960:intron 25.0%
! AATTTGATGTTTGTTCAAAC+GGG - chr1_2:77048298-77048317 Msa0093960:intron 25.0%
! CTAAAAAATTGTATTGAAGG+AGG + chr1_2:77048629-77048648 None:intergenic 25.0%
!!! TTTTAGTTTCCTCATTTAAG+GGG - chr1_2:77048643-77048662 Msa0093960:intron 25.0%
!! GGTTCTATTCTATACATTTT+TGG - chr1_2:77048872-77048891 Msa0093960:intron 25.0%
!! TACTTTTGTCTAGTTGTATT+TGG - chr1_2:77048923-77048942 Msa0093960:intron 25.0%
!! TCTAGTTGTATTTGGAATTT+CGG - chr1_2:77048931-77048950 Msa0093960:intron 25.0%
!! AAGAATTTTCACAACGTAAA+TGG + chr1_2:77049012-77049031 None:intergenic 25.0%
! TAGCAAGTAAAATTAACACA+AGG - chr1_2:77049262-77049281 Msa0093960:CDS 25.0%
! AATTAGCAATAATCTAGCTA+TGG + chr1_2:77049521-77049540 None:intergenic 25.0%
!!! TATGAAAGATAGTTTTTGAG+TGG - chr1_2:77049639-77049658 Msa0093960:intron 25.0%
!!! TTTTATGTAACAGAAAGCAT+TGG - chr1_2:77049666-77049685 Msa0093960:intron 25.0%
!! GTTTTTCTTACATACTAATC+CGG - chr1_2:77050059-77050078 Msa0093960:intron 25.0%
! TATACAATGACAACACAAAA+TGG + chr1_2:77050194-77050213 None:intergenic 25.0%
! TTTATAGAGGTAAATTACCA+CGG - chr1_2:77050242-77050261 Msa0093960:intron 25.0%
! GTAAAAGTTTAGTTGAAACA+AGG - chr1_2:77050289-77050308 Msa0093960:intron 25.0%
!! AACAAGTTTAATTTCAGGAA+AGG - chr1_2:77050437-77050456 Msa0093960:intron 25.0%
!! ACAAGTTTAATTTCAGGAAA+GGG - chr1_2:77050438-77050457 Msa0093960:intron 25.0%
!! TTTGATTTCTACAAGAAACT+TGG + chr1_2:77050554-77050573 None:intergenic 25.0%
! TCTTGTAGAAATCAAATTTG+AGG - chr1_2:77050558-77050577 Msa0093960:intron 25.0%
! TAGAAATCAAATTTGAGGAT+AGG - chr1_2:77050563-77050582 Msa0093960:intron 25.0%
!! TTATCATCTTTTGCTTAAAC+AGG + chr1_2:77050697-77050716 None:intergenic 25.0%
! TAAGCAAAAGATGATAAGAA+TGG - chr1_2:77050700-77050719 Msa0093960:intron 25.0%
! ATGACAAAAAGTAGAAACAA+AGG + chr1_2:77050753-77050772 None:intergenic 25.0%
!! GTGAGCTCAAATTTTATAAT+AGG - chr1_2:77051020-77051039 Msa0093960:CDS 25.0%
!! TCAAATTTTATAATAGGGCA+GGG - chr1_2:77051026-77051045 Msa0093960:CDS 25.0%
!! TTTTGCAAATAACTAAGCAA+GGG - chr1_2:77051179-77051198 Msa0093960:intron 25.0%
! AGTTTCTTAATAAGGTTGTA+AGG - chr1_2:77051208-77051227 Msa0093960:intron 25.0%
! GTAATATTAATTGCTAACCT+CGG - chr1_2:77051236-77051255 Msa0093960:intron 25.0%
! TAATATTAATTGCTAACCTC+GGG - chr1_2:77051237-77051256 Msa0093960:intron 25.0%
!!! TAAGTTTTTTTCTGTATTCG+TGG - chr1_2:77051336-77051355 Msa0093960:intron 25.0%
! ATATTTGAAAAACAACGAGA+AGG + chr1_2:77051520-77051539 None:intergenic 25.0%
! TAGGTAACAAATATAATCAG+AGG - chr1_2:77051859-77051878 Msa0093960:intron 25.0%
! TTAAATTTACACCTTGCAAA+CGG + chr1_2:77051920-77051939 None:intergenic 25.0%
! TGATCAAATCTACAACATAA+TGG - chr1_2:77051970-77051989 Msa0093960:intron 25.0%
! ATCACTTTAGACATGTTTAA+GGG + chr1_2:77052003-77052022 None:intergenic 25.0%
!! TAATTTGTGACTTTATGTTG+GGG + chr1_2:77052200-77052219 None:intergenic 25.0%
! ATTCAGACAATCTTTATGTT+TGG + chr1_2:77052318-77052337 None:intergenic 25.0%
!!! AAAAAAAAACTAGTTCTGTC+TGG + chr1_2:77052381-77052400 None:intergenic 25.0%
! TAAACATCGAAGCTTATTAT+CGG - chr1_2:77052481-77052500 Msa0093960:intron 25.0%
!!! TTTTGGGAAAAATATCAAGT+TGG - chr1_2:77052987-77053006 Msa0093960:CDS 25.0%
!!! TATTTCTACTTGTTTTTGGT+TGG - chr1_2:77053176-77053195 Msa0093960:five_prime_UTR 25.0%
!!! ATTTCTACTTGTTTTTGGTT+GGG - chr1_2:77053177-77053196 Msa0093960:five_prime_UTR 25.0%
! TGAAACAGGTTTCGAAATTT+TGG - chr1_2:77047900-77047919 Msa0093960:three_prime_UTR 30.0%
! GAAACAGGTTTCGAAATTTT+GGG - chr1_2:77047901-77047920 Msa0093960:three_prime_UTR 30.0%
TAAACTATTCTACAGAGCTA+TGG + chr1_2:77047963-77047982 None:intergenic 30.0%
ATTTGATGTTTGTTCAAACG+GGG - chr1_2:77048299-77048318 Msa0093960:intron 30.0%
! ATTGTATTGAAGGAGGATTT+TGG + chr1_2:77048622-77048641 None:intergenic 30.0%
TATAAAGAAAAATAAGCCCC+TGG - chr1_2:77048675-77048694 Msa0093960:intron 30.0%
! CTAGTTGTATTTGGAATTTC+GGG - chr1_2:77048932-77048951 Msa0093960:intron 30.0%
! AATTTTCACAACGTAAATGG+AGG + chr1_2:77049009-77049028 None:intergenic 30.0%
! GGTTAAAGATGATGCATTTT+TGG - chr1_2:77049162-77049181 Msa0093960:intron 30.0%
! ACTACAATTGAAGTCACTTT+CGG - chr1_2:77049375-77049394 Msa0093960:intron 30.0%
!! AAGGTTACATATTTGAGTTG+TGG - chr1_2:77049406-77049425 Msa0093960:intron 30.0%
TAAATACAATAGACCCGTTA+TGG - chr1_2:77049442-77049461 Msa0093960:intron 30.0%
AAATACAATAGACCCGTTAT+GGG - chr1_2:77049443-77049462 Msa0093960:intron 30.0%
! GTTATGAACTTTCTAGAAAC+AGG - chr1_2:77049492-77049511 Msa0093960:intron 30.0%
TTATTGCTAATTCTCACTAG+TGG - chr1_2:77049529-77049548 Msa0093960:intron 30.0%
TATGTTTGAATTCATGTGAG+AGG - chr1_2:77049985-77050004 Msa0093960:intron 30.0%
AACCTGTTTAGACTGTTAAA+CGG + chr1_2:77050114-77050133 None:intergenic 30.0%
TTATAGAGGTAAATTACCAC+GGG - chr1_2:77050243-77050262 Msa0093960:intron 30.0%
AATATTAATCTCGGGTATGA+AGG + chr1_2:77050336-77050355 None:intergenic 30.0%
! TTCTAGGGAATATTAATCTC+GGG + chr1_2:77050344-77050363 None:intergenic 30.0%
!! GTTCTAGGGAATATTAATCT+CGG + chr1_2:77050345-77050364 None:intergenic 30.0%
! CAAGTTTAATTTCAGGAAAG+GGG - chr1_2:77050439-77050458 Msa0093960:intron 30.0%
CATGTTAAATTGCTTATGGT+TGG + chr1_2:77050493-77050512 None:intergenic 30.0%
TGCTGAGATTTATAGCATTA+GGG + chr1_2:77050643-77050662 None:intergenic 30.0%
TTGCTGAGATTTATAGCATT+AGG + chr1_2:77050644-77050663 None:intergenic 30.0%
! GTTTTTGATCGAAGCAAATT+GGG + chr1_2:77050675-77050694 None:intergenic 30.0%
AAAGGCAAAAATGAAGAATG+AGG + chr1_2:77050735-77050754 None:intergenic 30.0%
AGGATTCAATTCTAATGCTT+TGG + chr1_2:77050927-77050946 None:intergenic 30.0%
! AAAATGCTCAAGCTTTTCAT+GGG + chr1_2:77050984-77051003 None:intergenic 30.0%
! CTCAAATTTTATAATAGGGC+AGG - chr1_2:77051025-77051044 Msa0093960:CDS 30.0%
CTTGCTTAGTTATTTGCAAA+AGG + chr1_2:77051180-77051199 None:intergenic 30.0%
! CTTTTGCAAATAACTAAGCA+AGG - chr1_2:77051178-77051197 Msa0093960:intron 30.0%
AAGATGAAGGAAGAAATGAT+TGG - chr1_2:77051481-77051500 Msa0093960:intron 30.0%
CATTTAACAATGAAGAAGAC+AGG + chr1_2:77051604-77051623 None:intergenic 30.0%
! TTGAAGATTGAGTTGTTTGA+TGG + chr1_2:77051692-77051711 None:intergenic 30.0%
AAATCTTGAATTTCAGCTCA+AGG - chr1_2:77051795-77051814 Msa0093960:intron 30.0%
TAAATTTACACCTTGCAAAC+GGG + chr1_2:77051919-77051938 None:intergenic 30.0%
TCACTTTAGACATGTTTAAG+GGG + chr1_2:77052002-77052021 None:intergenic 30.0%
CATCACTTTAGACATGTTTA+AGG + chr1_2:77052004-77052023 None:intergenic 30.0%
! CTTAAACATGTCTAAAGTGA+TGG - chr1_2:77052002-77052021 Msa0093960:intron 30.0%
AATTTGTGACTTTATGTTGG+GGG + chr1_2:77052199-77052218 None:intergenic 30.0%
!! ATTATTTTATGGTGATTGCC+TGG - chr1_2:77052507-77052526 Msa0093960:intron 30.0%
! TCTCATTCCAACAGTAATTT+TGG - chr1_2:77052780-77052799 Msa0093960:intron 30.0%
!!! GTTGATATTTTGACAAAGCA+AGG - chr1_2:77053073-77053092 Msa0093960:CDS 30.0%
!!! TATTTTGACAAAGCAAGGAT+TGG - chr1_2:77053078-77053097 Msa0093960:CDS 30.0%
!! ATTTTGACAAAGCAAGGATT+GGG - chr1_2:77053079-77053098 Msa0093960:CDS 30.0%
!!! TTTCTACTTGTTTTTGGTTG+GGG - chr1_2:77053178-77053197 Msa0093960:five_prime_UTR 30.0%
ATAAGTACTTTGTGCCCATT+TGG - chr1_2:77048033-77048052 Msa0093960:CDS 35.0%
TATCATATAAAGGGTCGGTT+TGG + chr1_2:77048256-77048275 None:intergenic 35.0%
GTGCTTATCATATAAAGGGT+CGG + chr1_2:77048261-77048280 None:intergenic 35.0%
CCTAAAACTTATCAAACCAG+AGG + chr1_2:77048406-77048425 None:intergenic 35.0%
!! CCTCTGGTTTGATAAGTTTT+AGG - chr1_2:77048403-77048422 Msa0093960:intron 35.0%
! TATTGAAGGAGGATTTTGGA+GGG + chr1_2:77048618-77048637 None:intergenic 35.0%
ACAAAAGATCCCCTTAAATG+AGG + chr1_2:77048655-77048674 None:intergenic 35.0%
TTAAGGAGTCATGTCACAAT+TGG - chr1_2:77048813-77048832 Msa0093960:intron 35.0%
TAAGGAGTCATGTCACAATT+GGG - chr1_2:77048814-77048833 Msa0093960:intron 35.0%
! TTGTATTTGGAATTTCGGGT+AGG - chr1_2:77048936-77048955 Msa0093960:intron 35.0%
!! AAGCGTTGAAAAACCAACTT+AGG - chr1_2:77048981-77049000 Msa0093960:intron 35.0%
CTTGAAATCAACCATTGTGA+TGG - chr1_2:77049122-77049141 Msa0093960:intron 35.0%
! CTACAATTGAAGTCACTTTC+GGG - chr1_2:77049376-77049395 Msa0093960:intron 35.0%
ACGGGTCTATTGTATTTACA+AGG + chr1_2:77049440-77049459 None:intergenic 35.0%
TCATAACCATGTCAAGTTCA+AGG + chr1_2:77049479-77049498 None:intergenic 35.0%
CACTAGTGGAAAAAAAAAGC+TGG - chr1_2:77049543-77049562 Msa0093960:intron 35.0%
CAAATGAAGCAAAGGTAGAA+GGG - chr1_2:77049695-77049714 Msa0093960:intron 35.0%
! TTTTGTAGATGCAAAGTACG+AGG - chr1_2:77049726-77049745 Msa0093960:intron 35.0%
! TGTGCTTTCTGAAAATGGTA+TGG - chr1_2:77049842-77049861 Msa0093960:intron 35.0%
GCTGAATGCAAAACTAACTT+AGG + chr1_2:77050031-77050050 None:intergenic 35.0%
! GTTTTGCATTCAGCTCTTTT+AGG - chr1_2:77050037-77050056 Msa0093960:intron 35.0%
TACCGTTTAACAGTCTAAAC+AGG - chr1_2:77050109-77050128 Msa0093960:intron 35.0%
TATAGAGGTAAATTACCACG+GGG - chr1_2:77050244-77050263 Msa0093960:intron 35.0%
TGCTTATGGTTGGATCATAA+TGG + chr1_2:77050483-77050502 None:intergenic 35.0%
GCTATAAATCTCAGCAAAGT+CGG - chr1_2:77050647-77050666 Msa0093960:intron 35.0%
! GGTTTTTGATCGAAGCAAAT+TGG + chr1_2:77050676-77050695 None:intergenic 35.0%
TTCCAAATAATGTTGCTCTG+CGG - chr1_2:77050798-77050817 Msa0093960:intron 35.0%
ATCTTTGACACATATACCTC+AGG - chr1_2:77050871-77050890 Msa0093960:intron 35.0%
TCTTTGACACATATACCTCA+GGG - chr1_2:77050872-77050891 Msa0093960:intron 35.0%
TCCTATGTATGTCAAAGCTT+TGG - chr1_2:77050943-77050962 Msa0093960:CDS 35.0%
! ACCAAAGCTTTGACATACAT+AGG + chr1_2:77050947-77050966 None:intergenic 35.0%
! CAAAATGCTCAAGCTTTTCA+TGG + chr1_2:77050985-77051004 None:intergenic 35.0%
!! AAAGCTTGAGCATTTTGAAG+AGG - chr1_2:77050988-77051007 Msa0093960:CDS 35.0%
CTCAGATAAACAATGTCAAG+AGG + chr1_2:77051082-77051101 None:intergenic 35.0%
GGAGCTGTAGTTTCTTAATA+AGG - chr1_2:77051200-77051219 Msa0093960:intron 35.0%
!!! TTATTTTTTGTAGGGGTGTG+TGG - chr1_2:77051559-77051578 Msa0093960:intron 35.0%
CAGGAAACGCAATTAAAACA+TGG + chr1_2:77051585-77051604 None:intergenic 35.0%
! AAACATGTCTAAAGTGATGG+TGG - chr1_2:77052005-77052024 Msa0093960:intron 35.0%
! CAGGATGTAAAAAGCATATG+TGG + chr1_2:77052119-77052138 None:intergenic 35.0%
TTTATAGGAGAGTTTGTGTC+AGG + chr1_2:77052138-77052157 None:intergenic 35.0%
TGACACAAACTCTCCTATAA+AGG - chr1_2:77052137-77052156 Msa0093960:intron 35.0%
GTATCATTCACCTCCTTTAT+AGG + chr1_2:77052153-77052172 None:intergenic 35.0%
GAGGTGAATGATACTATGTT+GGG - chr1_2:77052159-77052178 Msa0093960:intron 35.0%
CTTTGCAAACTTGCAACAAT+GGG + chr1_2:77052237-77052256 None:intergenic 35.0%
TCTTTGCAAACTTGCAACAA+TGG + chr1_2:77052238-77052257 None:intergenic 35.0%
CAGCTATAACCTTTATGTTC+GGG + chr1_2:77052262-77052281 None:intergenic 35.0%
CCAGCTATAACCTTTATGTT+CGG + chr1_2:77052263-77052282 None:intergenic 35.0%
!! TTCATCTCTTAGAAGTGCTA+TGG - chr1_2:77052351-77052370 Msa0093960:intron 35.0%
TGCAGCAAAACTGAAAGATA+TGG - chr1_2:77052676-77052695 Msa0093960:intron 35.0%
GCAGCAAAACTGAAAGATAT+GGG - chr1_2:77052677-77052696 Msa0093960:intron 35.0%
TGCTCAACCAAAATTACTGT+TGG + chr1_2:77052790-77052809 None:intergenic 35.0%
! TTATTTCCTTCAAAGGGCAT+TGG - chr1_2:77052910-77052929 Msa0093960:CDS 35.0%
! TTGATTGATTCATCGTGTGA+AGG - chr1_2:77052933-77052952 Msa0093960:CDS 35.0%
! TGATTGATTCATCGTGTGAA+GGG - chr1_2:77052934-77052953 Msa0093960:CDS 35.0%
! TTTTGACAAAGCAAGGATTG+GGG - chr1_2:77053080-77053099 Msa0093960:CDS 35.0%
! AATACTAGCTTAATCGACAC+TGG + chr1_2:77053109-77053128 None:intergenic 35.0%
!!! TTCTACTTGTTTTTGGTTGG+GGG - chr1_2:77053179-77053198 Msa0093960:five_prime_UTR 35.0%
!! TATAAAGGGTCGGTTTGGAT+TGG + chr1_2:77048251-77048270 None:intergenic 40.0%
GAAGAGAAGTAGAAATCCTC+TGG - chr1_2:77048387-77048406 Msa0093960:intron 40.0%
! GTATTGAAGGAGGATTTTGG+AGG + chr1_2:77048619-77048638 None:intergenic 40.0%
TCCCTTCAACAAGGTTTATG+CGG + chr1_2:77048772-77048791 None:intergenic 40.0%
TCCTTAAACTCGTCAAACCA+TGG + chr1_2:77048800-77048819 None:intergenic 40.0%
AAGGAGTCATGTCACAATTG+GGG - chr1_2:77048815-77048834 Msa0093960:intron 40.0%
ATAGAACCTCTCTCCAACTT+GGG + chr1_2:77048860-77048879 None:intergenic 40.0%
AATAGAACCTCTCTCCAACT+TGG + chr1_2:77048861-77048880 None:intergenic 40.0%
TCATCTTCTCTCCATCACAA+TGG + chr1_2:77049136-77049155 None:intergenic 40.0%
ATGGAGAGAAGATGAAATGC+TGG - chr1_2:77049141-77049160 Msa0093960:intron 40.0%
CACGCCTATTAATGTTGAAG+AGG - chr1_2:77049341-77049360 Msa0093960:intron 40.0%
GGCTCCTCTTCAACATTAAT+AGG + chr1_2:77049348-77049367 None:intergenic 40.0%
TTAATGTTGAAGAGGAGCCT+TGG - chr1_2:77049349-77049368 Msa0093960:intron 40.0%
ACTTCAATTGTAGTGCACCA+AGG + chr1_2:77049369-77049388 None:intergenic 40.0%
AGGAAGAGTTAGACCCATAA+CGG + chr1_2:77049459-77049478 None:intergenic 40.0%
ACTCTTCCTTGAACTTGACA+TGG - chr1_2:77049470-77049489 Msa0093960:intron 40.0%
GGTTCAAGCAAATGAAGCAA+AGG - chr1_2:77049687-77049706 Msa0093960:intron 40.0%
GCAAATGAAGCAAAGGTAGA+AGG - chr1_2:77049694-77049713 Msa0093960:intron 40.0%
!! TTTTCAGAAAGCACACTCCA+CGG + chr1_2:77049837-77049856 None:intergenic 40.0%
! TGGAGTGTGCTTTCTGAAAA+TGG - chr1_2:77049837-77049856 Msa0093960:intron 40.0%
! CAGATATTTTATCATCCCCG+TGG + chr1_2:77050262-77050281 None:intergenic 40.0%
! CATGACTGTTTCTCGTTCTA+GGG + chr1_2:77050359-77050378 None:intergenic 40.0%
! TCATGACTGTTTCTCGTTCT+AGG + chr1_2:77050360-77050379 None:intergenic 40.0%
CATAATGGTCACGTCTCTAA+AGG + chr1_2:77050468-77050487 None:intergenic 40.0%
! GTGTCTTCATATTTTCCCTG+AGG + chr1_2:77050890-77050909 None:intergenic 40.0%
! GTCAAAGCTTTGGTAAGAAG+AGG - chr1_2:77050953-77050972 Msa0093960:CDS 40.0%
AAATTTGAGCTCACCAGCAA+TGG + chr1_2:77051014-77051033 None:intergenic 40.0%
AATTGTACCAATGTCCTCTC+AGG - chr1_2:77051050-77051069 Msa0093960:intron 40.0%
! AAATAGAGTACCCCCAAACA+AGG + chr1_2:77051157-77051176 None:intergenic 40.0%
ATTAATTGCTAACCTCGGGA+TGG - chr1_2:77051241-77051260 Msa0093960:intron 40.0%
ATCTGTCAAGTGAAAAGAGC+TGG + chr1_2:77051371-77051390 None:intergenic 40.0%
ATCCCTCAAATGATCAAGCT+GGG - chr1_2:77051413-77051432 Msa0093960:intron 40.0%
TTCCCAGCTTGATCATTTGA+GGG + chr1_2:77051418-77051437 None:intergenic 40.0%
TTTCCCAGCTTGATCATTTG+AGG + chr1_2:77051419-77051438 None:intergenic 40.0%
GGTAAAACGGGAAAAGATGA+AGG - chr1_2:77051468-77051487 Msa0093960:intron 40.0%
CTTGAATTTCAGCTCAAGGT+AGG - chr1_2:77051799-77051818 Msa0093960:intron 40.0%
TCAGAGGAGTTATAGACTCT+TGG - chr1_2:77051875-77051894 Msa0093960:CDS 40.0%
CAGAGGAGTTATAGACTCTT+GGG - chr1_2:77051876-77051895 Msa0093960:CDS 40.0%
ATTGAACTAACCCGTTTGCA+AGG - chr1_2:77051906-77051925 Msa0093960:CDS 40.0%
! CCGTTCAACTGATGCATTTT+GGG + chr1_2:77052047-77052066 None:intergenic 40.0%
CCCAAAATGCATCAGTTGAA+CGG - chr1_2:77052044-77052063 Msa0093960:intron 40.0%
! ACCGTTCAACTGATGCATTT+TGG + chr1_2:77052048-77052067 None:intergenic 40.0%
AATGCATCAGTTGAACGGTA+AGG - chr1_2:77052049-77052068 Msa0093960:intron 40.0%
CAAAACTATAGTCTCAGTCG+TGG - chr1_2:77052084-77052103 Msa0093960:intron 40.0%
CACAAACTCTCCTATAAAGG+AGG - chr1_2:77052140-77052159 Msa0093960:intron 40.0%
GGAGGTGAATGATACTATGT+TGG - chr1_2:77052158-77052177 Msa0093960:intron 40.0%
TGCAAAGAACCCGAACATAA+AGG - chr1_2:77052250-77052269 Msa0093960:intron 40.0%
CCGAACATAAAGGTTATAGC+TGG - chr1_2:77052260-77052279 Msa0093960:intron 40.0%
TCCAGACAGAACTAGTTAGT+AGG - chr1_2:77052415-77052434 Msa0093960:intron 40.0%
AGATTCTTCTGAGTTGCACT+CGG - chr1_2:77052441-77052460 Msa0093960:intron 40.0%
TGACAGTGAAACATGTACTC+AGG + chr1_2:77052627-77052646 None:intergenic 40.0%
AGATATGGGCAACTCTCTAT+TGG - chr1_2:77052691-77052710 Msa0093960:intron 40.0%
GATATGGGCAACTCTCTATT+GGG - chr1_2:77052692-77052711 Msa0093960:intron 40.0%
ACAGAATAGGAACCAGTGTT+TGG + chr1_2:77052761-77052780 None:intergenic 40.0%
CTGTTGGAATGAGACAGAAT+AGG + chr1_2:77052774-77052793 None:intergenic 40.0%
AATCAACCAATGCCCTTTGA+AGG + chr1_2:77052919-77052938 None:intergenic 40.0%
! GATTGATTCATCGTGTGAAG+GGG - chr1_2:77052935-77052954 Msa0093960:CDS 40.0%
CGATTACTACCATCTTCGAG+AGG + chr1_2:77047625-77047644 None:intergenic 45.0%
CCTTCTCTTGCTCTGTATGT+TGG + chr1_2:77047808-77047827 None:intergenic 45.0%
CCAACATACAGAGCAAGAGA+AGG - chr1_2:77047805-77047824 Msa0093960:three_prime_UTR 45.0%
TACAGAGCAAGAGAAGGAGA+AGG - chr1_2:77047811-77047830 Msa0093960:three_prime_UTR 45.0%
!! GACAATGGAAGCATCATCAG+AGG + chr1_2:77047870-77047889 None:intergenic 45.0%
! TGATGATGCTTCCATTGTCG+AGG - chr1_2:77047871-77047890 Msa0093960:three_prime_UTR 45.0%
TTTCAGTTCCTCCTCGACAA+TGG + chr1_2:77047885-77047904 None:intergenic 45.0%
TTAGGCTCAGTTTGCGAGTT+TGG - chr1_2:77048421-77048440 Msa0093960:intron 45.0%
GAGATGGGATGGATGACTTT+GGG + chr1_2:77048701-77048720 None:intergenic 45.0%
AGAGATGGGATGGATGACTT+TGG + chr1_2:77048702-77048721 None:intergenic 45.0%
GAGTTTGGAGGAGAAGAGAT+GGG + chr1_2:77048716-77048735 None:intergenic 45.0%
! TAAGGCTCTGATTGCGAGTT+TGG + chr1_2:77048731-77048750 None:intergenic 45.0%
AACTCGCAATCAGAGCCTTA+AGG - chr1_2:77048731-77048750 Msa0093960:intron 45.0%
GGAAAACCTCTTGCACCTTA+AGG + chr1_2:77048749-77048768 None:intergenic 45.0%
CCTTCAACAAGGTTTATGCG+GGG + chr1_2:77048770-77048789 None:intergenic 45.0%
CCCTTCAACAAGGTTTATGC+GGG + chr1_2:77048771-77048790 None:intergenic 45.0%
CCCGCATAAACCTTGTTGAA+GGG - chr1_2:77048768-77048787 Msa0093960:intron 45.0%
GCATAAACCTTGTTGAAGGG+AGG - chr1_2:77048771-77048790 Msa0093960:intron 45.0%
GCCATGGTTTGACGAGTTTA+AGG - chr1_2:77048796-77048815 Msa0093960:intron 45.0%
TCATGTCACAATTGGGGATG+AGG - chr1_2:77048821-77048840 Msa0093960:intron 45.0%
CATGTCACAATTGGGGATGA+GGG - chr1_2:77048822-77048841 Msa0093960:intron 45.0%
ATGTCACAATTGGGGATGAG+GGG - chr1_2:77048823-77048842 Msa0093960:intron 45.0%
GGTTCTCCAATAACCCAAGT+TGG - chr1_2:77048844-77048863 Msa0093960:intron 45.0%
CTCTCTCCAACTTGGGTTAT+TGG + chr1_2:77048853-77048872 None:intergenic 45.0%
! CAATAACCCAAGTTGGAGAG+AGG - chr1_2:77048851-77048870 Msa0093960:intron 45.0%
GTAAATGGAGGAGCCTAAGT+TGG + chr1_2:77048997-77049016 None:intergenic 45.0%
GGAAGAGTTAGACCCATAAC+GGG + chr1_2:77049458-77049477 None:intergenic 45.0%
TGTAGATGCAAAGTACGAGG+AGG - chr1_2:77049729-77049748 Msa0093960:CDS 45.0%
TCAATATGCCATGCAAACCG+TGG - chr1_2:77049817-77049836 Msa0093960:CDS 45.0%
CAAGAGCTAGATAGACCACT+AGG + chr1_2:77049958-77049977 None:intergenic 45.0%
TGCCGCAGAGCAACATTATT+TGG + chr1_2:77050803-77050822 None:intergenic 45.0%
! AGCTTTGGTAAGAAGAGGAG+AGG - chr1_2:77050958-77050977 Msa0093960:CDS 45.0%
!! CATTTTGAAGAGGCCATTGC+TGG - chr1_2:77050998-77051017 Msa0093960:CDS 45.0%
GTGAAAACCTGAGAGGACAT+TGG + chr1_2:77051060-77051079 None:intergenic 45.0%
TCAAGAGGTGAAAACCTGAG+AGG + chr1_2:77051067-77051086 None:intergenic 45.0%
! CTTGACACCCTTCCTTGTTT+GGG - chr1_2:77051142-77051161 Msa0093960:intron 45.0%
! TTGACACCCTTCCTTGTTTG+GGG - chr1_2:77051143-77051162 Msa0093960:intron 45.0%
GATCCCTCAAATGATCAAGC+TGG - chr1_2:77051412-77051431 Msa0093960:intron 45.0%
AAGCTGGGAAAGCTATTCGT+CGG - chr1_2:77051428-77051447 Msa0093960:intron 45.0%
ACCACATCCTCTATGACAAG+TGG - chr1_2:77051734-77051753 Msa0093960:intron 45.0%
CCACATCCTCTATGACAAGT+GGG - chr1_2:77051735-77051754 Msa0093960:intron 45.0%
ATCCTCTATGACAAGTGGGT+TGG - chr1_2:77051739-77051758 Msa0093960:intron 45.0%
TTCCAACCCACTTGTCATAG+AGG + chr1_2:77051744-77051763 None:intergenic 45.0%
GTGTGGCTGTCAAACTATGT+AGG - chr1_2:77051840-77051859 Msa0093960:intron 45.0%
TGACTTTATGTTGGGGGCTA+TGG + chr1_2:77052193-77052212 None:intergenic 45.0%
GCAAACTTGCAACAATGGGT+CGG + chr1_2:77052233-77052252 None:intergenic 45.0%
!! GCCTACTAACTAGTTCTGTC+TGG + chr1_2:77052419-77052438 None:intergenic 45.0%
GATTCTTCTGAGTTGCACTC+GGG - chr1_2:77052442-77052461 Msa0093960:intron 45.0%
TGTCTACACTCATCCCAAAG+CGG + chr1_2:77052718-77052737 None:intergenic 45.0%
AGGAACCAGTGTTTGGATCT+TGG + chr1_2:77052754-77052773 None:intergenic 45.0%
! GAGCAAAGTCATGAAAGCGT+TGG - chr1_2:77052805-77052824 Msa0093960:intron 45.0%
CGTTGTTCATGCAAGTCACT+AGG - chr1_2:77052839-77052858 Msa0093960:CDS 45.0%
!!! TTAATAATTTAATTTTATAG+AGG - chr1_2:77050229-77050248 Msa0093960:intron 5.0%
!! TATTAAAAGAAAAAATAAAA+GGG + chr1_2:77051279-77051298 None:intergenic 5.0%
!!! TTTTATTTTTTCTTTTAATA+CGG - chr1_2:77051279-77051298 Msa0093960:intron 5.0%
!! CATCTTCGAGAGGTTTGCTG+TGG + chr1_2:77047615-77047634 None:intergenic 50.0%
CACAGCAAACCTCTCGAAGA+TGG - chr1_2:77047613-77047632 Msa0093960:three_prime_UTR 50.0%
TCAACCAACGACGTTTCCGA+CGG - chr1_2:77047677-77047696 Msa0093960:three_prime_UTR 50.0%
GGAGCAATCAAACACGAGGA+AGG - chr1_2:77047758-77047777 Msa0093960:three_prime_UTR 50.0%
GCAAGAGAAGGAGAAGGAAC+AGG - chr1_2:77047817-77047836 Msa0093960:three_prime_UTR 50.0%
TGATGCTTCCATTGTCGAGG+AGG - chr1_2:77047874-77047893 Msa0093960:three_prime_UTR 50.0%
TGTCGAGGAGGAACTGAAAC+AGG - chr1_2:77047886-77047905 Msa0093960:three_prime_UTR 50.0%
GCTCAGTTTGCGAGTTTGGA+GGG - chr1_2:77048425-77048444 Msa0093960:intron 50.0%
AGTTTGCGAGTTTGGAGGGA+AGG - chr1_2:77048429-77048448 Msa0093960:intron 50.0%
GTTTGCGAGTTTGGAGGGAA+GGG - chr1_2:77048430-77048449 Msa0093960:intron 50.0%
TTTGCGAGTTTGGAGGGAAG+GGG - chr1_2:77048431-77048450 Msa0093960:intron 50.0%
TTGGAGGAGAAGAGATGGGA+TGG + chr1_2:77048712-77048731 None:intergenic 50.0%
CGAGTTTGGAGGAGAAGAGA+TGG + chr1_2:77048717-77048736 None:intergenic 50.0%
TCAGAGCCTTAAGGTGCAAG+AGG - chr1_2:77048740-77048759 Msa0093960:intron 50.0%
CCCCGCATAAACCTTGTTGA+AGG - chr1_2:77048767-77048786 Msa0093960:intron 50.0%
ATGGCTACCTCCCTTCAACA+AGG + chr1_2:77048781-77048800 None:intergenic 50.0%
TTGTTGAAGGGAGGTAGCCA+TGG - chr1_2:77048780-77048799 Msa0093960:intron 50.0%
GGCGTGCGCACAGAATATTA+AGG + chr1_2:77049327-77049346 None:intergenic 50.0%
! GTCACTTTCGGGTGACTAGA+AGG - chr1_2:77049387-77049406 Msa0093960:intron 50.0%
GAGCGTATTTCCACAGACGA+AGG + chr1_2:77049799-77049818 None:intergenic 50.0%
CTAGATAGACCACTAGGCAG+AGG + chr1_2:77049952-77049971 None:intergenic 50.0%
TGAGCAGCAGCAGCAGAAAA+AGG - chr1_2:77050377-77050396 Msa0093960:intron 50.0%
GCTTGACACCCTTCCTTGTT+TGG - chr1_2:77051141-77051160 Msa0093960:intron 50.0%
! TGACACCCTTCCTTGTTTGG+GGG - chr1_2:77051144-77051163 Msa0093960:intron 50.0%
GAGTACCCCCAAACAAGGAA+GGG + chr1_2:77051152-77051171 None:intergenic 50.0%
! AGAGTACCCCCAAACAAGGA+AGG + chr1_2:77051153-77051172 None:intergenic 50.0%
TAACGGCAATAACCATCCCG+AGG + chr1_2:77051256-77051275 None:intergenic 50.0%
! TTCCCGTTTTACCGCAGCAA+GGG + chr1_2:77051461-77051480 None:intergenic 50.0%
! TTTCCCGTTTTACCGCAGCA+AGG + chr1_2:77051462-77051481 None:intergenic 50.0%
CCCACTTGTCATAGAGGATG+TGG + chr1_2:77051738-77051757 None:intergenic 50.0%
GAGATGTGCTGTCTACAGTG+TGG - chr1_2:77051823-77051842 Msa0093960:intron 50.0%
AACTCTCTATTGGGCCGCTT+TGG - chr1_2:77052701-77052720 Msa0093960:intron 50.0%
! ACTCTCTATTGGGCCGCTTT+GGG - chr1_2:77052702-77052721 Msa0093960:intron 50.0%
GCAGTCCAAGATCCAAACAC+TGG - chr1_2:77052746-77052765 Msa0093960:intron 50.0%
TTGGTTGAAGCTGCGTCGGA+GGG + chr1_2:77047665-77047684 None:intergenic 55.0%
! GTCGTTGGTTGAAGCTGCGT+CGG + chr1_2:77047669-77047688 None:intergenic 55.0%
AAAGCCGTCGGAAACGTCGT+TGG + chr1_2:77047684-77047703 None:intergenic 55.0%
ACTGGCGGTTTCAAAGCCGT+CGG + chr1_2:77047696-77047715 None:intergenic 55.0%
CTCGTGTTTGATTGCTCCGC+CGG + chr1_2:77047756-77047775 None:intergenic 55.0%
GGCTCAGTTTGCGAGTTTGG+AGG - chr1_2:77048424-77048443 Msa0093960:intron 55.0%
GATGGATGACTTTGGGCCAG+GGG + chr1_2:77048694-77048713 None:intergenic 55.0%
GGATGGATGACTTTGGGCCA+GGG + chr1_2:77048695-77048714 None:intergenic 55.0%
! GGCTCTGATTGCGAGTTTGG+AGG + chr1_2:77048728-77048747 None:intergenic 55.0%
! TCCACAGACGAAGGCATGTC+TGG + chr1_2:77049790-77049809 None:intergenic 55.0%
AGCACACTCCACGGTTTGCA+TGG + chr1_2:77049828-77049847 None:intergenic 55.0%
AGCCCCTTGCTGCGGTAAAA+CGG - chr1_2:77051455-77051474 Msa0093960:intron 55.0%
! TCCCGTTTTACCGCAGCAAG+GGG + chr1_2:77051460-77051479 None:intergenic 55.0%
GTTGGTTGAAGCTGCGTCGG+AGG + chr1_2:77047666-77047685 None:intergenic 60.0%
ACCGCCAGTGACACCGATCT+CGG - chr1_2:77047707-77047726 Msa0093960:three_prime_UTR 60.0%
CGGCGGAGCAATCAAACACG+AGG - chr1_2:77047754-77047773 Msa0093960:three_prime_UTR 60.0%
CGAGTTTGGAGGGAAGGGGA+GGG - chr1_2:77048435-77048454 Msa0093960:intron 60.0%
GAGTTTGGAGGGAAGGGGAG+GGG - chr1_2:77048436-77048455 Msa0093960:intron 60.0%
GGGATGGATGACTTTGGGCC+AGG + chr1_2:77048696-77048715 None:intergenic 60.0%
GCCAGACATGCCTTCGTCTG+TGG - chr1_2:77049786-77049805 Msa0093960:CDS 60.0%
TCGGTTAGAGCCCCTTGCTG+CGG - chr1_2:77051447-77051466 Msa0093960:intron 60.0%
GCCCCTTGCTGCGGTAAAAC+GGG - chr1_2:77051456-77051475 Msa0093960:intron 60.0%
!! GCCGAGATCGGTGTCACTGG+CGG + chr1_2:77047711-77047730 None:intergenic 65.0%
!! GCTGCCGAGATCGGTGTCAC+TGG + chr1_2:77047714-77047733 None:intergenic 65.0%
GTCGACGTCGCTGCCGAGAT+CGG + chr1_2:77047723-77047742 None:intergenic 65.0%
GATTGCTCCGCCGGCGTCAT+GGG + chr1_2:77047747-77047766 None:intergenic 65.0%
TGATTGCTCCGCCGGCGTCA+TGG + chr1_2:77047748-77047767 None:intergenic 65.0%
GCGAGTTTGGAGGGAAGGGG+AGG - chr1_2:77048434-77048453 Msa0093960:intron 65.0%
TTGGAGGGAAGGGGAGGGGA+AGG - chr1_2:77048440-77048459 Msa0093960:intron 65.0%
TGGAGGGAAGGGGAGGGGAA+GGG - chr1_2:77048441-77048460 Msa0093960:intron 65.0%
AGGGGAGGGGAAGGGAGTAG+AGG - chr1_2:77048449-77048468 Msa0093960:intron 65.0%
GGGGAGGGGAAGGGAGTAGA+GGG - chr1_2:77048450-77048469 Msa0093960:intron 65.0%
GCTCGACTGCCTCTGCCTAG+TGG - chr1_2:77049940-77049959 Msa0093960:intron 65.0%
GACGTCGACGCCCATGACGC+CGG - chr1_2:77047734-77047753 Msa0093960:three_prime_UTR 70.0%
GTCGACGCCCATGACGCCGG+CGG - chr1_2:77047737-77047756 Msa0093960:three_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 77047539 77053207 77047539 ID=Msa0093960;Name=Msa0093960
chr1_2 mRNA 77047539 77053207 77047539 ID=Msa0093960-mRNA-1;Parent=Msa0093960;Name=Msa0093960-mRNA-1;_AED=0.10;_eAED=0.10;_QI=93|0.6|0.83|0.83|1|1|6|411|298
chr1_2 exon 77047539 77048065 77047539 ID=Msa0093960-mRNA-1:exon:27244;Parent=Msa0093960-mRNA-1
chr1_2 exon 77049244 77049357 77049244 ID=Msa0093960-mRNA-1:exon:27243;Parent=Msa0093960-mRNA-1
chr1_2 exon 77049727 77049853 77049727 ID=Msa0093960-mRNA-1:exon:27242;Parent=Msa0093960-mRNA-1
chr1_2 exon 77050888 77051067 77050888 ID=Msa0093960-mRNA-1:exon:27241;Parent=Msa0093960-mRNA-1
chr1_2 exon 77051874 77051957 77051874 ID=Msa0093960-mRNA-1:exon:27240;Parent=Msa0093960-mRNA-1
chr1_2 exon 77052839 77053207 77052839 ID=Msa0093960-mRNA-1:exon:27239;Parent=Msa0093960-mRNA-1
chr1_2 five_prime_UTR 77053115 77053207 77053115 ID=Msa0093960-mRNA-1:five_prime_utr;Parent=Msa0093960-mRNA-1
chr1_2 CDS 77052839 77053114 77052839 ID=Msa0093960-mRNA-1:cds;Parent=Msa0093960-mRNA-1
chr1_2 CDS 77051874 77051957 77051874 ID=Msa0093960-mRNA-1:cds;Parent=Msa0093960-mRNA-1
chr1_2 CDS 77050888 77051067 77050888 ID=Msa0093960-mRNA-1:cds;Parent=Msa0093960-mRNA-1
chr1_2 CDS 77049727 77049853 77049727 ID=Msa0093960-mRNA-1:cds;Parent=Msa0093960-mRNA-1
chr1_2 CDS 77049244 77049357 77049244 ID=Msa0093960-mRNA-1:cds;Parent=Msa0093960-mRNA-1
chr1_2 CDS 77047950 77048065 77047950 ID=Msa0093960-mRNA-1:cds;Parent=Msa0093960-mRNA-1
chr1_2 three_prime_UTR 77047539 77047949 77047539 ID=Msa0093960-mRNA-1:three_prime_utr;Parent=Msa0093960-mRNA-1
Gene Sequence

>Msa0093960

ATGGTAGTAATCGAAGATCGAAACGCGATTCCCTCCGACGCAGCTTCAACCAACGACGTTTCCGACGGCTTTGAAACCGCCAGTGACACCGATCTCGGCAGCGACGTCGACGCCCATGACGCCGGCGGAGCAATCAAACACGAGGAAGGAGATCATCGTGATCAGCAAAGCAACCAACATACAGAGCAAGAGAAGGAGAAGGAACAGGAGCAGATTGATTCTCAGAGAATCATTTCCTCTGATGATGCTTCCATTGTCGAGGAGGAACTGAAACAGGGAGGTAGCCATGGTTTGACGAGTTTAAGGAGTCATGTCACAATTGGGGATGAGGGGTTCTCCAATAACCCAAGTTGGAGAGAGAAAGCATTGGTTCAAGCAAATGAAGCAAAGGTAGAAGGGAACAAACTTTTTGTAGATGCAAAGTACGAGGAGGCATTAACACAATATGAACTTGCTTTAGAAGTTGCGCCAGACATGCCTTCGTCTGTGGAAATACGCTCAATATGCCATGCAAACCGTGGAGTGTGCTTTCTGAAAATGGGAAAATATGAAGACACAGTTAAAGAATGCACCAAAGCATTAGAATTGAATCCTATGTATGTCAAAGCTTTGGTAAGAAGAGGAGAGGCCCATGAAAAGCTTGAGCATTTTGAAGAGGCCATTGCTGATATGAAAAAGATCTTAGAAATTGATCCCTCAAATGATCAAGCTGGGAAAGCTATTCGTCGGTTAGAGCCCCTTGCTGCGGTAAAACGGGAAAAGATGAAGGAAGAAATGATTGCAAAACTGAAAGATATGGGCAACTCTCTATTGGGCCGCTTTGGGATGAGTGTAGACAACTTTAAAGCAGTCCAAGATCCAAACACTGGTTCCTATTCTGTCTCATTCCAACAGTAA
Protein sequence

>Msa0093960

MVVIEDRNAIPSDAASTNDVSDGFETASDTDLGSDVDAHDAGGAIKHEEGDHRDQQSNQHTEQEKEKEQEQIDSQRIISSDDASIVEEELKQGGSHGLTSLRSHVTIGDEGFSNNPSWREKALVQANEAKVEGNKLFVDAKYEEALTQYELALEVAPDMPSSVEIRSICHANRGVCFLKMGKYEDTVKECTKALELNPMYVKALVRRGEAHEKLEHFEEAIADMKKILEIDPSNDQAGKAIRRLEPLAAVKREKMKEEMIAKLKDMGNSLLGRFGMSVDNFKAVQDPNTGSYSVSFQQ*