AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0772480


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0772480 MtrunA17_Chr5g0403031 95.109 184 9 0 1 184 1 184 1.22e-123 346
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0772480 AT4G37090.1 45.946 185 88 4 1 180 1 178 4.92e-33 116
Msa0772480 AT4G37090.2 45.946 185 86 5 1 180 1 176 1.81e-26 99.8

Find 44 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAATCGATTCAGAAAATTT+AGG 0.187077 5_2:+46856362 None:intergenic
AGAAAGAACGTCGGCGAAAA+TGG 0.201521 5_2:-46854922 Msa0772480:CDS
AAGCATTTCAACAATGCTTT+TGG 0.238659 5_2:+46854772 None:intergenic
GCTGGTTTGCTCACAATAAT+AGG 0.265535 5_2:+46854459 None:intergenic
AAGAGAAAATCCAAGGATTC+AGG 0.267478 5_2:-46854590 Msa0772480:CDS
TAATCGATTCAGAAAATTTA+GGG 0.281735 5_2:+46856363 None:intergenic
TACGTCTACTTTCCAGTTCC+GGG 0.304004 5_2:-46854338 Msa0772480:CDS
TTACGTCTACTTTCCAGTTC+CGG 0.332647 5_2:-46854339 Msa0772480:CDS
CCTTGGATTTCTTGAAAGAA+AGG 0.335846 5_2:-46854413 Msa0772480:CDS
TGAGGAGGAAGATAAATTAA+AGG 0.340761 5_2:-46854627 Msa0772480:CDS
AGAGATTCGAAAGATTAAAA+AGG 0.343332 5_2:-46856109 Msa0772480:CDS
CCCTACTAACCCTGAATCCT+TGG 0.350071 5_2:+46854580 None:intergenic
TTCAAAACAGCAGACGATCT+TGG 0.392274 5_2:+46854378 None:intergenic
TATTATAGGACAGGATATAT+AGG 0.399759 5_2:-46853348 Msa0772480:intron
AGAAATCCCACAGCAGTGTT+TGG 0.406449 5_2:+46854797 None:intergenic
GAAAGAACGTCGGCGAAAAT+GGG 0.410361 5_2:-46854921 Msa0772480:CDS
AAGGCAGTCTTTAAGCATTC+AGG 0.411790 5_2:+46854432 None:intergenic
TGTTCAGCTGTGAATTCCTC+AGG 0.416780 5_2:+46856278 None:intergenic
TGAGGAATTCACAGCTGAAC+AGG 0.425645 5_2:-46856276 Msa0772480:intron
TGTTGAAATGCTTGCAGCTA+AGG 0.442831 5_2:-46854762 Msa0772480:CDS
CTGGTGTATGATCCCGGAAC+TGG 0.461090 5_2:+46854326 None:intergenic
AATTAAAGGCTACCACTTCA+AGG 0.462256 5_2:-46854613 Msa0772480:CDS
AGTGGTTTCACTCTCAGCTC+AGG 0.464656 5_2:-46853324 Msa0772480:three_prime_UTR
TTTAAGCATTCAGGAGGAGC+TGG 0.495755 5_2:+46854441 None:intergenic
AGAGAAAATCCAAGGATTCA+GGG 0.497993 5_2:-46854589 Msa0772480:intron
AGGACAGGATATATAGGAAG+TGG 0.516185 5_2:-46853342 Msa0772480:intron
TTAGTAGCTTTGGATGGTCG+AGG 0.518576 5_2:+46854884 None:intergenic
TCATTTCTGGTGTATGATCC+CGG 0.547780 5_2:+46854320 None:intergenic
ATCAGAATCGTTGTCTGACA+TGG 0.553832 5_2:+46856304 None:intergenic
AAGTAGACGTAATGCTTGGT+TGG 0.572908 5_2:+46854350 None:intergenic
TGAATGCTTAAAGACTGCCT+TGG 0.581346 5_2:-46854430 Msa0772480:CDS
TGGAAAGTAGACGTAATGCT+TGG 0.583915 5_2:+46854346 None:intergenic
CCTTTCTTTCAAGAAATCCA+AGG 0.588770 5_2:+46854413 None:intergenic
GTTCAGCTGTGAATTCCTCA+GGG 0.589265 5_2:+46856279 None:intergenic
TTCAAGGAAGAGAAAATCCA+AGG 0.598658 5_2:-46854597 Msa0772480:CDS
GGGATCATACACCAGAAATG+AGG 0.600352 5_2:-46854318 Msa0772480:exon
TTTATTAACTGAGACTGATG+AGG 0.602529 5_2:-46854645 Msa0772480:CDS
ATTAACTGAGACTGATGAGG+AGG 0.608820 5_2:-46854642 Msa0772480:CDS
AAAACAACAGGCATTTGCAA+AGG 0.613402 5_2:+46853294 None:intergenic
GCAGTCTTTAAGCATTCAGG+AGG 0.620920 5_2:+46854435 None:intergenic
GTGGTTTCACTCTCAGCTCA+GGG 0.625383 5_2:-46853323 Msa0772480:three_prime_UTR
TTCAGCTGTGAATTCCTCAG+GGG 0.664205 5_2:+46856280 None:intergenic
CAACGATTCTGATGCCCCTG+AGG 0.672395 5_2:-46856294 Msa0772480:CDS
ATATTGAAGAGAAAGAACGT+CGG 0.783151 5_2:-46854931 Msa0772480:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAGTTTCATAAATTATTAT+GGG - chr5_2:46854485-46854504 Msa0772480:intron 10.0%
!! AACAATAAATAACTTAATAA+TGG + chr5_2:46855672-46855691 None:intergenic 10.0%
!! CTAAATTATTAAACTATAAA+AGG + chr5_2:46856247-46856266 None:intergenic 10.0%
!!! TTTAATTTGTTTTGTTTTTG+AGG - chr5_2:46853450-46853469 Msa0772480:intron 15.0%
!!! TTTTCAATCTTATTTTTGTT+GGG - chr5_2:46853690-46853709 Msa0772480:intron 15.0%
!!! TTTTAACATTGATAGATTAT+TGG - chr5_2:46853993-46854012 Msa0772480:intron 15.0%
!!! AAGAATTTTGATAAAAGATT+TGG - chr5_2:46854164-46854183 Msa0772480:intron 15.0%
!!! TATTTAAATTTTAACAACAC+TGG - chr5_2:46854394-46854413 Msa0772480:CDS 15.0%
!!! GTTAGTTTCATAAATTATTA+TGG - chr5_2:46854484-46854503 Msa0772480:intron 15.0%
!! ATTATTAAACTATAAAAGGT+TGG + chr5_2:46856243-46856262 None:intergenic 15.0%
!! ATAATTTAGTTATAAATGTG+AGG - chr5_2:46856258-46856277 Msa0772480:intron 15.0%
!!! TAATCGATTCAGAAAATTTA+GGG + chr5_2:46853282-46853301 None:intergenic 20.0%
!! AAATAAATTGGAATTGGAAT+TGG + chr5_2:46853409-46853428 None:intergenic 20.0%
!! TGAAACAAATAAATTGGAAT+TGG + chr5_2:46853415-46853434 None:intergenic 20.0%
!! TTCGATTGAAACAAATAAAT+TGG + chr5_2:46853421-46853440 None:intergenic 20.0%
!! TTAAAAAGGAAAACAAAATC+AGG - chr5_2:46853547-46853566 Msa0772480:intron 20.0%
!!! ATGAGGTTAATTTAAGTTAT+TGG - chr5_2:46853577-46853596 Msa0772480:intron 20.0%
!!! GTTTTCAATCTTATTTTTGT+TGG - chr5_2:46853689-46853708 Msa0772480:intron 20.0%
!!! TTTCAATCTTATTTTTGTTG+GGG - chr5_2:46853691-46853710 Msa0772480:intron 20.0%
!!! TCATTTTGCTGATTATTAAT+TGG - chr5_2:46854113-46854132 Msa0772480:intron 20.0%
!! AATTTAAATAACAGCTATAG+TGG + chr5_2:46854384-46854403 None:intergenic 20.0%
!! ATAATTGCATAGAAATAGAT+AGG + chr5_2:46855095-46855114 None:intergenic 20.0%
!! AAGGAAATATATATAACTAC+AGG + chr5_2:46855144-46855163 None:intergenic 20.0%
!!! TTCAAATTATTTGTCGTTTA+AGG + chr5_2:46855713-46855732 None:intergenic 20.0%
!! AACAAAAAGAGAAAGAAAAA+TGG + chr5_2:46856159-46856178 None:intergenic 20.0%
!! GTAATCGATTCAGAAAATTT+AGG + chr5_2:46853283-46853302 None:intergenic 25.0%
! AGAGATTCGAAAGATTAAAA+AGG - chr5_2:46853533-46853552 Msa0772480:intron 25.0%
! GATAGATTATTGGATAATCT+CGG - chr5_2:46854003-46854022 Msa0772480:intron 25.0%
! ATAGATTATTGGATAATCTC+GGG - chr5_2:46854004-46854023 Msa0772480:intron 25.0%
!! TTTGCTGATTATTAATTGGT+TGG - chr5_2:46854117-46854136 Msa0772480:intron 25.0%
! TCTCTTATACTGCATAATTA+TGG - chr5_2:46854591-46854610 Msa0772480:CDS 25.0%
! CTCTTATACTGCATAATTAT+GGG - chr5_2:46854592-46854611 Msa0772480:CDS 25.0%
! ATATTAGACATCACTATATG+TGG + chr5_2:46854671-46854690 None:intergenic 25.0%
! ATGTCTAATATGACTTTACA+TGG - chr5_2:46854680-46854699 Msa0772480:intron 25.0%
! CAAAGCTACTAAAAAATCTA+GGG - chr5_2:46854769-46854788 Msa0772480:CDS 25.0%
! TCTTTAGATAAATCTCTAAG+AGG - chr5_2:46854951-46854970 Msa0772480:intron 25.0%
!!! TTTATAGATTTTTTTGGCCA+AGG - chr5_2:46855366-46855385 Msa0772480:intron 25.0%
! ATAATCAACTTCAACTAACA+TGG + chr5_2:46855484-46855503 None:intergenic 25.0%
! GAATGATAACACTGATAAAA+GGG - chr5_2:46855565-46855584 Msa0772480:intron 25.0%
! AATGATAACACTGATAAAAG+GGG - chr5_2:46855566-46855585 Msa0772480:intron 25.0%
!! TTGTAAGCAATATTTTGTGA+TGG - chr5_2:46855733-46855752 Msa0772480:intron 25.0%
!!! AAACACTTTTGATTCTGTTT+AGG - chr5_2:46855946-46855965 Msa0772480:intron 25.0%
!!! AACACTTTTGATTCTGTTTA+GGG - chr5_2:46855947-46855966 Msa0772480:intron 25.0%
! TCCTATAATAGAAAAACAAC+TGG + chr5_2:46856284-46856303 None:intergenic 25.0%
!!! TTGTTTTTCTATTATAGGAC+AGG - chr5_2:46856285-46856304 Msa0772480:CDS 25.0%
! TATTATAGGACAGGATATAT+AGG - chr5_2:46856294-46856313 Msa0772480:CDS 25.0%
CAAAATCAGGTTTAGTTATG+AGG - chr5_2:46853560-46853579 Msa0772480:intron 30.0%
TTGCAATGAGTAAAGTAACT+AGG - chr5_2:46853633-46853652 Msa0772480:intron 30.0%
TGCAATGAGTAAAGTAACTA+GGG - chr5_2:46853634-46853653 Msa0772480:intron 30.0%
GATATTGATCAATCTTGATG+TGG - chr5_2:46853758-46853777 Msa0772480:intron 30.0%
! ATTTTGTACTGAATAGTGTG+TGG + chr5_2:46853856-46853875 None:intergenic 30.0%
TTATTAATTGGTTGGCACTA+CGG - chr5_2:46854125-46854144 Msa0772480:intron 30.0%
TGCAGTATAAGAGAGAATAA+AGG + chr5_2:46854585-46854604 None:intergenic 30.0%
TAATATGACTTTACATGGCA+GGG - chr5_2:46854685-46854704 Msa0772480:intron 30.0%
ATATTGAAGAGAAAGAACGT+CGG - chr5_2:46854711-46854730 Msa0772480:intron 30.0%
!!! GATTTTTTAGTAGCTTTGGA+TGG + chr5_2:46854767-46854786 None:intergenic 30.0%
!!! CCTAGATTTTTTAGTAGCTT+TGG + chr5_2:46854771-46854790 None:intergenic 30.0%
CCAAAGCTACTAAAAAATCT+AGG - chr5_2:46854768-46854787 Msa0772480:CDS 30.0%
! AGCATTTCAACAATGCTTTT+GGG + chr5_2:46854872-46854891 None:intergenic 30.0%
! AAGCATTTCAACAATGCTTT+TGG + chr5_2:46854873-46854892 None:intergenic 30.0%
TTTATTAACTGAGACTGATG+AGG - chr5_2:46854997-46855016 Msa0772480:intron 30.0%
TGAGGAGGAAGATAAATTAA+AGG - chr5_2:46855015-46855034 Msa0772480:intron 30.0%
GGAATAAAAATCCTCATTTC+TGG + chr5_2:46855338-46855357 None:intergenic 30.0%
GGAATGATAACACTGATAAA+AGG - chr5_2:46855564-46855583 Msa0772480:intron 30.0%
ATGATAACACTGATAAAAGG+GGG - chr5_2:46855567-46855586 Msa0772480:intron 30.0%
AAGAAGAAGCTATAGTAACA+TGG - chr5_2:46855612-46855631 Msa0772480:intron 30.0%
ATACATGATGGCACATAAAT+TGG - chr5_2:46855764-46855783 Msa0772480:intron 30.0%
AAGAAAAAACGTCATCTTGT+TGG - chr5_2:46855874-46855893 Msa0772480:intron 30.0%
!! AGTGTTTTTGAGAGTTTTCA+GGG + chr5_2:46855933-46855952 None:intergenic 30.0%
!! AAGTGTTTTTGAGAGTTTTC+AGG + chr5_2:46855934-46855953 None:intergenic 30.0%
!!! GCCAGTTGTTTTTCTATTAT+AGG - chr5_2:46856280-46856299 Msa0772480:CDS 30.0%
!!! CTGTTGTTTTTCTCAAACAA+GGG - chr5_2:46856361-46856380 Msa0772480:five_prime_UTR 30.0%
! AATCTAAGAGTGTGTATTGC+AGG - chr5_2:46853494-46853513 Msa0772480:intron 35.0%
! ATCTAAGAGTGTGTATTGCA+GGG - chr5_2:46853495-46853514 Msa0772480:intron 35.0%
ATATTGCAGTTATAGCGTAG+CGG - chr5_2:46853804-46853823 Msa0772480:intron 35.0%
TTGTCGATCACAAACAACAA+CGG + chr5_2:46853949-46853968 None:intergenic 35.0%
ATCGACAACATTAGTTACGT+TGG - chr5_2:46853961-46853980 Msa0772480:intron 35.0%
TATCGCAAAAAATAGTGCTC+TGG - chr5_2:46854242-46854261 Msa0772480:intron 35.0%
CAACACTGGAACATATGAAA+AGG - chr5_2:46854408-46854427 Msa0772480:CDS 35.0%
CTAATATGACTTTACATGGC+AGG - chr5_2:46854684-46854703 Msa0772480:intron 35.0%
! TTTTGCTGAGATTCAGTGTT+TGG + chr5_2:46854824-46854843 None:intergenic 35.0%
AGCTAAGGAGAAGTAATGAT+TGG - chr5_2:46854895-46854914 Msa0772480:CDS 35.0%
GTTAGATAAGAGAGAAAGAG+AGG + chr5_2:46854921-46854940 None:intergenic 35.0%
AATTAAAGGCTACCACTTCA+AGG - chr5_2:46855029-46855048 Msa0772480:intron 35.0%
TTCAAGGAAGAGAAAATCCA+AGG - chr5_2:46855045-46855064 Msa0772480:intron 35.0%
AAGAGAAAATCCAAGGATTC+AGG - chr5_2:46855052-46855071 Msa0772480:intron 35.0%
AGAGAAAATCCAAGGATTCA+GGG - chr5_2:46855053-46855072 Msa0772480:intron 35.0%
TTCAGAACTGCAAATCACAA+AGG + chr5_2:46855163-46855182 None:intergenic 35.0%
CCTTTCTTTCAAGAAATCCA+AGG + chr5_2:46855232-46855251 None:intergenic 35.0%
CCTTGGATTTCTTGAAAGAA+AGG - chr5_2:46855229-46855248 Msa0772480:intron 35.0%
!! TCTGAAAGTATTTCAGGGTT+TGG + chr5_2:46855540-46855559 None:intergenic 35.0%
!! CCTTCTCTGAAAGTATTTCA+GGG + chr5_2:46855545-46855564 None:intergenic 35.0%
CCTGAAATACTTTCAGAGAA+GGG - chr5_2:46855543-46855562 Msa0772480:intron 35.0%
TTTATGTGCCATCATGTATC+AGG + chr5_2:46855763-46855782 None:intergenic 35.0%
TGCTCATATCTGAAAACTAG+TGG - chr5_2:46855832-46855851 Msa0772480:intron 35.0%
! TAGTGGCTTGCATATGTTTA+AGG - chr5_2:46855849-46855868 Msa0772480:intron 35.0%
ACGACAAAGACGATTTCAAA+TGG - chr5_2:46856033-46856052 Msa0772480:intron 35.0%
!! TAGAGTGTTGAAAATTGCTG+AGG - chr5_2:46856184-46856203 Msa0772480:intron 35.0%
TTGAAAATTGCTGAGGCTAA+TGG - chr5_2:46856191-46856210 Msa0772480:intron 35.0%
AAAACAACAGGCATTTGCAA+AGG + chr5_2:46856351-46856370 None:intergenic 35.0%
! CCTTGTTTGAGAAAAACAAC+AGG + chr5_2:46856363-46856382 None:intergenic 35.0%
!!! CCTGTTGTTTTTCTCAAACA+AGG - chr5_2:46856360-46856379 Msa0772480:five_prime_UTR 35.0%
ATCAGAATCGTTGTCTGACA+TGG + chr5_2:46853341-46853360 None:intergenic 40.0%
! AGTTATAGCGTAGCGGAATT+TGG - chr5_2:46853811-46853830 Msa0772480:intron 40.0%
! TGCACTATAGCACTTTTGCA+TGG - chr5_2:46853898-46853917 Msa0772480:intron 40.0%
! ACTATAGCACTTTTGCATGG+TGG - chr5_2:46853901-46853920 Msa0772480:intron 40.0%
GATAATCTCGGGTTTGAGTA+GGG - chr5_2:46854015-46854034 Msa0772480:intron 40.0%
AAATAACAGCTATAGTGGCG+CGG + chr5_2:46854379-46854398 None:intergenic 40.0%
TGAGAGATAGTGCTTATCTC+AGG - chr5_2:46854456-46854475 Msa0772480:CDS 40.0%
CATGAGTCCAAAATAAAGCC+AGG + chr5_2:46854640-46854659 None:intergenic 40.0%
CAAAAACCAAACACTGCTGT+GGG - chr5_2:46854839-46854858 Msa0772480:CDS 40.0%
TGTTGAAATGCTTGCAGCTA+AGG - chr5_2:46854880-46854899 Msa0772480:CDS 40.0%
ATTAACTGAGACTGATGAGG+AGG - chr5_2:46855000-46855019 Msa0772480:intron 40.0%
! GGATTTTCTCTTCCTTGAAG+TGG + chr5_2:46855044-46855063 None:intergenic 40.0%
!! GCTGGTTTGCTCACAATAAT+AGG + chr5_2:46855186-46855205 None:intergenic 40.0%
AAGGCAGTCTTTAAGCATTC+AGG + chr5_2:46855213-46855232 None:intergenic 40.0%
TGAATGCTTAAAGACTGCCT+TGG - chr5_2:46855212-46855231 Msa0772480:intron 40.0%
TTCAAAACAGCAGACGATCT+TGG + chr5_2:46855267-46855286 None:intergenic 40.0%
AAGTAGACGTAATGCTTGGT+TGG + chr5_2:46855295-46855314 None:intergenic 40.0%
TGGAAAGTAGACGTAATGCT+TGG + chr5_2:46855299-46855318 None:intergenic 40.0%
TTACGTCTACTTTCCAGTTC+CGG - chr5_2:46855303-46855322 Msa0772480:intron 40.0%
!! TCATTTCTGGTGTATGATCC+CGG + chr5_2:46855325-46855344 None:intergenic 40.0%
!!! AGATTTTTTTGGCCAAGGTG+AGG - chr5_2:46855371-46855390 Msa0772480:intron 40.0%
AGTATTTCAGGGTTTGGAGA+GGG + chr5_2:46855534-46855553 None:intergenic 40.0%
AAGTATTTCAGGGTTTGGAG+AGG + chr5_2:46855535-46855554 None:intergenic 40.0%
CCCTGAAATACTTTCAGAGA+AGG - chr5_2:46855542-46855561 Msa0772480:intron 40.0%
!! CCCTTCTCTGAAAGTATTTC+AGG + chr5_2:46855546-46855565 None:intergenic 40.0%
ATAACACTGATAAAAGGGGG+AGG - chr5_2:46855570-46855589 Msa0772480:intron 40.0%
TAACACTGATAAAAGGGGGA+GGG - chr5_2:46855571-46855590 Msa0772480:intron 40.0%
ATGGTCAACCTGATACATGA+TGG - chr5_2:46855752-46855771 Msa0772480:intron 40.0%
!! CCTATCGACTTGTTGCTAAA+TGG + chr5_2:46855807-46855826 None:intergenic 40.0%
CCATTTAGCAACAAGTCGAT+AGG - chr5_2:46855804-46855823 Msa0772480:intron 40.0%
TTCTGTTTAGGGACTTCTGA+TGG - chr5_2:46855958-46855977 Msa0772480:intron 40.0%
AGGACAGGATATATAGGAAG+TGG - chr5_2:46856300-46856319 Msa0772480:CDS 40.0%
TTCAGCTGTGAATTCCTCAG+GGG + chr5_2:46853365-46853384 None:intergenic 45.0%
GTTCAGCTGTGAATTCCTCA+GGG + chr5_2:46853366-46853385 None:intergenic 45.0%
TGTTCAGCTGTGAATTCCTC+AGG + chr5_2:46853367-46853386 None:intergenic 45.0%
TGAGGAATTCACAGCTGAAC+AGG - chr5_2:46853366-46853385 Msa0772480:intron 45.0%
GGATAATCTCGGGTTTGAGT+AGG - chr5_2:46854014-46854033 Msa0772480:intron 45.0%
! ATTATGGGCTAACCGCTGAA+TGG - chr5_2:46854500-46854519 Msa0772480:intron 45.0%
AGATGGGTGTAGCTAGCATA+TGG - chr5_2:46854526-46854545 Msa0772480:intron 45.0%
!!! ACGCTCTCCTGGCTTTATTT+TGG - chr5_2:46854630-46854649 Msa0772480:CDS 45.0%
AGAAAGAACGTCGGCGAAAA+TGG - chr5_2:46854720-46854739 Msa0772480:intron 45.0%
GAAAGAACGTCGGCGAAAAT+GGG - chr5_2:46854721-46854740 Msa0772480:intron 45.0%
!! TTAGTAGCTTTGGATGGTCG+AGG + chr5_2:46854761-46854780 None:intergenic 45.0%
GCAAAAACCAAACACTGCTG+TGG - chr5_2:46854838-46854857 Msa0772480:CDS 45.0%
AGAAATCCCACAGCAGTGTT+TGG + chr5_2:46854848-46854867 None:intergenic 45.0%
! TCCAAGGATTCAGGGTTAGT+AGG - chr5_2:46855061-46855080 Msa0772480:intron 45.0%
! CCAAGGATTCAGGGTTAGTA+GGG - chr5_2:46855062-46855081 Msa0772480:intron 45.0%
TTTAAGCATTCAGGAGGAGC+TGG + chr5_2:46855204-46855223 None:intergenic 45.0%
GCAGTCTTTAAGCATTCAGG+AGG + chr5_2:46855210-46855229 None:intergenic 45.0%
TACGTCTACTTTCCAGTTCC+GGG - chr5_2:46855304-46855323 Msa0772480:intron 45.0%
GGGATCATACACCAGAAATG+AGG - chr5_2:46855324-46855343 Msa0772480:intron 45.0%
ACAGAAGCAGCAAAGACGAT+TGG + chr5_2:46855424-46855443 None:intergenic 45.0%
! ATCGTCTTTGCTGCTTCTGT+CGG - chr5_2:46855424-46855443 Msa0772480:intron 45.0%
TTTGGAGAGGGAGTTCTATG+TGG + chr5_2:46855522-46855541 None:intergenic 45.0%
AACACTGATAAAAGGGGGAG+GGG - chr5_2:46855572-46855591 Msa0772480:intron 45.0%
TTGGAGCCACTTCTGTTCTT+GGG - chr5_2:46855893-46855912 Msa0772480:intron 45.0%
GAGGACTACTTCTTTGTCCA+GGG - chr5_2:46855992-46856011 Msa0772480:intron 45.0%
TTTGTCCAGGGTTTGTGATG+AGG - chr5_2:46856004-46856023 Msa0772480:intron 45.0%
CAAATCCTCATCACAAACCC+TGG + chr5_2:46856012-46856031 None:intergenic 45.0%
CAGGGTTTGTGATGAGGATT+TGG - chr5_2:46856010-46856029 Msa0772480:intron 45.0%
TTGCAGAGTTCTTGTCTTCC+TGG - chr5_2:46856081-46856100 Msa0772480:intron 45.0%
TCTTGTCTTCCTGGTGATCA+AGG - chr5_2:46856090-46856109 Msa0772480:intron 45.0%
GAATCAGAGACCAAGAAGGT+TGG + chr5_2:46856116-46856135 None:intergenic 45.0%
AGCTGAATCAGAGACCAAGA+AGG + chr5_2:46856120-46856139 None:intergenic 45.0%
!! AAAAATCTATAAATTTATAA+GGG + chr5_2:46855359-46855378 None:intergenic 5.0%
!! AAAAAATCTATAAATTTATA+AGG + chr5_2:46855360-46855379 None:intergenic 5.0%
!!! TATAAATTTATAGATTTTTT+TGG - chr5_2:46855360-46855379 Msa0772480:intron 5.0%
CAATCTTGATGTGGCTGCTC+AGG - chr5_2:46853767-46853786 Msa0772480:intron 50.0%
GTTGGCACTACGGTGCTTAA+TGG - chr5_2:46854135-46854154 Msa0772480:intron 50.0%
TAACCGCTGAATGGCACAGA+TGG - chr5_2:46854509-46854528 Msa0772480:intron 50.0%
AACCGCTGAATGGCACAGAT+GGG - chr5_2:46854510-46854529 Msa0772480:intron 50.0%
CCCTACTAACCCTGAATCCT+TGG + chr5_2:46855065-46855084 None:intergenic 50.0%
GTTGGAGCCACTTCTGTTCT+TGG - chr5_2:46855892-46855911 Msa0772480:intron 50.0%
CTTCAGCCCAAGAACAGAAG+TGG + chr5_2:46855902-46855921 None:intergenic 50.0%
!! TGAGAGTTTTCAGGGCTGCT+CGG + chr5_2:46855925-46855944 None:intergenic 50.0%
! ACTTCTGATGGCGAATGCGT+CGG - chr5_2:46855970-46855989 Msa0772480:intron 50.0%
GGAGGACTACTTCTTTGTCC+AGG - chr5_2:46855991-46856010 Msa0772480:intron 50.0%
GTGATCAAGGCCAACCTTCT+TGG - chr5_2:46856103-46856122 Msa0772480:CDS 50.0%
CTTGGTCTCTGATTCAGCTC+TGG - chr5_2:46856121-46856140 Msa0772480:CDS 50.0%
AGTGGTTTCACTCTCAGCTC+AGG - chr5_2:46856318-46856337 Msa0772480:exon 50.0%
GTGGTTTCACTCTCAGCTCA+GGG - chr5_2:46856319-46856338 Msa0772480:exon 50.0%
CAACGATTCTGATGCCCCTG+AGG - chr5_2:46853348-46853367 Msa0772480:intron 55.0%
! CACCCATCTGTGCCATTCAG+CGG + chr5_2:46854515-46854534 None:intergenic 55.0%
GATCCAATTGCACGCTCTCC+TGG - chr5_2:46854619-46854638 Msa0772480:CDS 55.0%
! AAGCCAGGAGAGCGTGCAAT+TGG + chr5_2:46854625-46854644 None:intergenic 55.0%
CTGGTGTATGATCCCGGAAC+TGG + chr5_2:46855319-46855338 None:intergenic 55.0%
GCAACATTGACGCCTCACCT+TGG + chr5_2:46855386-46855405 None:intergenic 55.0%
! TGCTGCTTCTGTCGGTGTAC+TGG - chr5_2:46855432-46855451 Msa0772480:intron 55.0%
ACTGATAAAAGGGGGAGGGG+TGG - chr5_2:46855575-46855594 Msa0772480:intron 55.0%
!! GAAGGTTGGCCTTGATCACC+AGG + chr5_2:46856102-46856121 None:intergenic 55.0%
! TCTGATGGCGAATGCGTCGG+AGG - chr5_2:46855973-46855992 Msa0772480:intron 60.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 46853270 46856394 46853270 ID=Msa0772480;Name=Msa0772480
chr5_2 mRNA 46853270 46856394 46853270 ID=Msa0772480-mRNA-1;Parent=Msa0772480;Name=Msa0772480-mRNA-1;_AED=0.22;_eAED=0.22;_QI=70|1|1|1|0.8|0.66|6|131|184
chr5_2 exon 46853270 46853357 46853270 ID=Msa0772480-mRNA-1:exon:14032;Parent=Msa0772480-mRNA-1
chr5_2 exon 46854277 46854488 46854277 ID=Msa0772480-mRNA-1:exon:14031;Parent=Msa0772480-mRNA-1
chr5_2 exon 46854590 46854673 46854590 ID=Msa0772480-mRNA-1:exon:14030;Parent=Msa0772480-mRNA-1
chr5_2 exon 46854758 46854958 46854758 ID=Msa0772480-mRNA-1:exon:14029;Parent=Msa0772480-mRNA-1
chr5_2 exon 46856096 46856148 46856096 ID=Msa0772480-mRNA-1:exon:14028;Parent=Msa0772480-mRNA-1
chr5_2 exon 46856277 46856394 46856277 ID=Msa0772480-mRNA-1:exon:14027;Parent=Msa0772480-mRNA-1
chr5_2 five_prime_UTR 46856325 46856394 46856325 ID=Msa0772480-mRNA-1:five_prime_utr;Parent=Msa0772480-mRNA-1
chr5_2 CDS 46856277 46856324 46856277 ID=Msa0772480-mRNA-1:cds;Parent=Msa0772480-mRNA-1
chr5_2 CDS 46856096 46856148 46856096 ID=Msa0772480-mRNA-1:cds;Parent=Msa0772480-mRNA-1
chr5_2 CDS 46854758 46854958 46854758 ID=Msa0772480-mRNA-1:cds;Parent=Msa0772480-mRNA-1
chr5_2 CDS 46854590 46854673 46854590 ID=Msa0772480-mRNA-1:cds;Parent=Msa0772480-mRNA-1
chr5_2 CDS 46854320 46854488 46854320 ID=Msa0772480-mRNA-1:cds;Parent=Msa0772480-mRNA-1
chr5_2 three_prime_UTR 46854277 46854319 46854277 ID=Msa0772480-mRNA-1:three_prime_utr;Parent=Msa0772480-mRNA-1
chr5_2 three_prime_UTR 46853270 46853357 46853270 ID=Msa0772480-mRNA-1:three_prime_utr;Parent=Msa0772480-mRNA-1
Gene Sequence

>Msa0772480

ATGTCAGACAACGATTCTGATGCCCCTGAGGAATTCACAGCTGAACAGGGTATTCAGCTAGACGAAGAGATTCGAAAGATTAAAAAGGAAAACAAAATCAGGGTTAATATTGAAGAGAAAGAACGTCGGCGAAAATGGGCTCAAAATTTAACACCTCGACCATCCAAAGCTACTAAAAAATCTAGGGACACATCAAACACTGAATCTGAGCAAGAACCAAACACTGAATCTCAGCAAAAACCAAACACTGCTGTGGGATTTCTTCCCAAAAGCATTGTTGAAATGCTTGCAGCTAAGGAGAAAAAAAATTTATTAACTGAGACTGATGAGGAGGAAGATAAATTAAAGGCTACCACTTCAAGGAAGAGAAAATCCAAGGATTCAGGTTCTGAACCTATTATTGTGAGCAAACCAGCTCCTCCTGAATGCTTAAAGACTGCCTTGGATTTCTTGAAAGAAAGGAAAATGTCAGTTCCAAGATCGTCTGCTGTTTTGAAGAATTCCAACCAAGCATTACGTCTACTTTCCAGTTCCGGGATCATACACCAGAAATGA

Protein sequence

>Msa0772480

MSDNDSDAPEEFTAEQGIQLDEEIRKIKKENKIRVNIEEKERRRKWAQNLTPRPSKATKKSRDTSNTESEQEPNTESQQKPNTAVGFLPKSIVEMLAAKEKKNLLTETDEEEDKLKATTSRKRKSKDSGSEPIIVSKPAPPECLKTALDFLKERKMSVPRSSAVLKNSNQALRLLSSSGIIHQK*