Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1462560 | XP_013458197.1 | 98.765 | 162 | 2 | 0 | 1 | 162 | 1 | 162 | 1.76e-109 | 318 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1462560 | sp|Q6L4D2|PM19L_ORYSJ | 40.816 | 147 | 67 | 3 | 13 | 155 | 12 | 142 | 1.78e-21 | 88.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1462560 | I3SV18 | 98.765 | 162 | 2 | 0 | 1 | 162 | 1 | 162 | 8.43e-110 | 318 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015150 | Msa1462560 | 0.830980 | 2.162959e-55 | -8.615850e-47 |
| Msa0064120 | Msa1462560 | 0.811820 | 5.783180e-51 | -8.615850e-47 |
| Msa1360930 | Msa1462560 | 0.805410 | 1.353347e-49 | -8.615850e-47 |
| Msa1429860 | Msa1462560 | 0.827332 | 1.658995e-54 | -8.615850e-47 |
| Msa1435630 | Msa1462560 | 0.836047 | 1.176327e-56 | -8.615850e-47 |
| Msa0740090 | Msa1462560 | 0.813862 | 2.064651e-51 | -8.615850e-47 |
| Msa0155180 | Msa1462560 | 0.853677 | 2.040100e-61 | -8.615850e-47 |
| Msa0382530 | Msa1462560 | 0.836614 | 8.442360e-57 | -8.615850e-47 |
| Msa0432320 | Msa1462560 | 0.824544 | 7.622614e-54 | -8.615850e-47 |
| Msa1211910 | Msa1462560 | 0.995332 | 3.154709e-215 | -8.615850e-47 |
| Msa0525210 | Msa1462560 | 0.833625 | 4.788489e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1462560 | MtrunA17_Chr4g0065951 | 98.765 | 162 | 2 | 0 | 1 | 162 | 1 | 162 | 1.62e-113 | 318 |
| Msa1462560 | MtrunA17_Chr2g0303931 | 50.340 | 147 | 73 | 0 | 1 | 147 | 1 | 147 | 2.53e-40 | 133 |
| Msa1462560 | MtrunA17_Chr6g0478031 | 47.020 | 151 | 80 | 0 | 7 | 157 | 2 | 152 | 2.70e-40 | 133 |
| Msa1462560 | MtrunA17_Chr1g0199041 | 38.926 | 149 | 67 | 4 | 13 | 155 | 12 | 142 | 5.84e-24 | 92.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1462560 | AT5G18970.1 | 69.620 | 158 | 48 | 0 | 1 | 158 | 1 | 158 | 3.36e-79 | 233 |
| Msa1462560 | AT5G46530.1 | 46.939 | 147 | 78 | 0 | 7 | 153 | 7 | 153 | 3.32e-41 | 135 |
| Msa1462560 | AT1G29520.1 | 49.020 | 153 | 78 | 0 | 1 | 153 | 1 | 153 | 2.90e-39 | 131 |
| Msa1462560 | AT1G04560.1 | 39.490 | 157 | 81 | 2 | 1 | 156 | 1 | 144 | 5.86e-26 | 97.8 |
Find 54 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCCCATTGGAAAGTATAT+TGG | 0.242510 | tig0042400:-2319 | None:intergenic |
| TTCTTCTGAGAATTCATATA+TGG | 0.274907 | tig0042400:-3061 | None:intergenic |
| CATTGGCTCCAACTGAAATT+TGG | 0.276417 | tig0042400:-3038 | None:intergenic |
| ACACTAGATTGAGGGTTAAA+AGG | 0.282593 | tig0042400:-1845 | None:intergenic |
| ATGGCTGCAGCATTTAAATT+AGG | 0.305394 | tig0042400:-2442 | None:intergenic |
| ATAATCTTCACTCTAATTGC+TGG | 0.330951 | tig0042400:+2361 | Msa1462560:CDS |
| ACTCTAATTGCTGGTGTTGT+GGG | 0.351945 | tig0042400:+2370 | Msa1462560:CDS |
| GGTTTCACTACATCAGTAAC+TGG | 0.354086 | tig0042400:+2391 | Msa1462560:CDS |
| TCCCCATTGGAAAGTATATT+GGG | 0.354392 | tig0042400:-2318 | None:intergenic |
| GTAAACAAATCAAAGGAATT+AGG | 0.381105 | tig0042400:-3113 | None:intergenic |
| CACTCTAATTGCTGGTGTTG+TGG | 0.382264 | tig0042400:+2369 | Msa1462560:CDS |
| GCACGACAGTTATCCATGTT+GGG | 0.393448 | tig0042400:+2977 | Msa1462560:CDS |
| TTGTGATTGTAATTGCTTCA+TGG | 0.397741 | tig0042400:+1877 | Msa1462560:CDS |
| CCAATGGGGAACATGACAAC+TGG | 0.405161 | tig0042400:+2331 | Msa1462560:CDS |
| TGTTGTTTGAGGATGGCTTC+CGG | 0.409237 | tig0042400:+1798 | Msa1462560:exon |
| TTCCCAATATACTTTCCAAT+GGG | 0.420160 | tig0042400:+2316 | Msa1462560:CDS |
| CAATTATTGTGATTGTTTCA+AGG | 0.431523 | tig0042400:-2933 | None:intergenic |
| AATTATTGTGATTGTTTCAA+GGG | 0.436827 | tig0042400:-2932 | None:intergenic |
| AACTTGATCATTGTTGTTTG+AGG | 0.443724 | tig0042400:+1787 | Msa1462560:five_prime_UTR |
| TTAAATTAGGAGCATTCCAT+TGG | 0.456921 | tig0042400:-2429 | None:intergenic |
| GGCACTCACTCTGTTAGCCA+TGG | 0.473924 | tig0042400:+2483 | Msa1462560:CDS |
| TGAGAATTCATATATGGCAT+TGG | 0.484778 | tig0042400:-3055 | None:intergenic |
| TGCACGACAGTTATCCATGT+TGG | 0.489286 | tig0042400:+2976 | Msa1462560:CDS |
| CCATGTCTTCACTGACAACA+TGG | 0.491482 | tig0042400:+2461 | Msa1462560:CDS |
| TGTGATTGTAATTGCTTCAT+GGG | 0.493799 | tig0042400:+1878 | Msa1462560:CDS |
| GCACTCACTCTGTTAGCCAT+GGG | 0.500737 | tig0042400:+2484 | Msa1462560:CDS |
| ATCATGGCATTCAAAGGTCT+AGG | 0.516571 | tig0042400:+1907 | Msa1462560:CDS |
| GCTTCATGGGCAATGAATCA+TGG | 0.517487 | tig0042400:+1891 | Msa1462560:CDS |
| TGAAATACAACACTAGATTG+AGG | 0.520580 | tig0042400:-1854 | None:intergenic |
| GGATCAAAATCAGTAGCCTT+AGG | 0.522274 | tig0042400:+1822 | Msa1462560:CDS |
| GCAAAGAGATTGAACGTGGT+TGG | 0.522540 | tig0042400:+2638 | Msa1462560:CDS |
| ATTCCCAATATACTTTCCAA+TGG | 0.522562 | tig0042400:+2315 | Msa1462560:CDS |
| CCAGTTGTCATGTTCCCCAT+TGG | 0.525769 | tig0042400:-2331 | None:intergenic |
| GAAATACAACACTAGATTGA+GGG | 0.526099 | tig0042400:-1853 | None:intergenic |
| ATTCAAAGGTCTAGGGAAGC+AGG | 0.526713 | tig0042400:+1915 | Msa1462560:CDS |
| TAGTTTCACCAAATTTCAGT+TGG | 0.544486 | tig0042400:+3030 | Msa1462560:exon |
| TATATTGGGAATATGTGAGC+TGG | 0.546271 | tig0042400:-2304 | None:intergenic |
| TGATCATTGTTGTTTGAGGA+TGG | 0.551046 | tig0042400:+1791 | Msa1462560:exon |
| CAATGAATCATGGCATTCAA+AGG | 0.553913 | tig0042400:+1901 | Msa1462560:CDS |
| ATTGAGGGTTAAAAGGCCTA+AGG | 0.558428 | tig0042400:-1838 | None:intergenic |
| CACGACAGTTATCCATGTTG+GGG | 0.573087 | tig0042400:+2978 | Msa1462560:CDS |
| CCATGTTGTCAGTGAAGACA+TGG | 0.585540 | tig0042400:-2461 | None:intergenic |
| TCATGGCATTCAAAGGTCTA+GGG | 0.602141 | tig0042400:+1908 | Msa1462560:CDS |
| CACTCACTCTGTTAGCCATG+GGG | 0.605084 | tig0042400:+2485 | Msa1462560:CDS |
| AACTATCTTGTAATTCTCTG+TGG | 0.607338 | tig0042400:-3012 | None:intergenic |
| TGGTTGGACTGATTCAAACC+TGG | 0.614574 | tig0042400:+2654 | Msa1462560:CDS |
| GAACTTCTGAAGCCCCAACA+TGG | 0.616123 | tig0042400:-2990 | None:intergenic |
| TGGGAATATGTGAGCTGGAG+TGG | 0.616192 | tig0042400:-2299 | None:intergenic |
| GATTGAATAACATATTCCAA+TGG | 0.624471 | tig0042400:+2413 | Msa1462560:CDS |
| CGTGCATAACAGTTGTGTTG+CGG | 0.634337 | tig0042400:-2959 | None:intergenic |
| TGTTTGAGGATGGCTTCCGG+AGG | 0.647389 | tig0042400:+1801 | Msa1462560:exon |
| CATGTCTTCACTGACAACAT+GGG | 0.663676 | tig0042400:+2462 | Msa1462560:CDS |
| TCCCAATATACTTTCCAATG+GGG | 0.680310 | tig0042400:+2317 | Msa1462560:CDS |
| GCATGCAAAGAGATTGAACG+TGG | 0.746939 | tig0042400:+2634 | Msa1462560:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTATCAATATTTTGTTT+TGG | - | tig0042400:2217-2236 | None:intergenic | 10.0% |
| !!! | AAATTATCAATATTTTGTTT+TGG | - | tig0042400:2217-2236 | None:intergenic | 10.0% |
| !!! | TTTAAAGCTAAAAAAAAACT+TGG | - | tig0042400:1768-1787 | None:intergenic | 15.0% |
| !!! | TAATTCAAATTGATTTATCA+TGG | + | tig0042400:1938-1957 | Msa1462560:intron | 15.0% |
| !! | AACTATATGTAATCAAAATA+GGG | - | tig0042400:2529-2548 | None:intergenic | 15.0% |
| !!! | ATTGTGTTTTTTTATTTTAC+TGG | + | tig0042400:2828-2847 | Msa1462560:intron | 15.0% |
| !!! | AACATCATATTCATTATTTT+TGG | + | tig0042400:2887-2906 | Msa1462560:intron | 15.0% |
| !!! | TTTAAAGCTAAAAAAAAACT+TGG | - | tig0042400:1768-1787 | None:intergenic | 15.0% |
| !!! | TAATTCAAATTGATTTATCA+TGG | + | tig0042400:1938-1957 | Msa1462560:intron | 15.0% |
| !! | AACTATATGTAATCAAAATA+GGG | - | tig0042400:2529-2548 | None:intergenic | 15.0% |
| !!! | ATTGTGTTTTTTTATTTTAC+TGG | + | tig0042400:2828-2847 | Msa1462560:intron | 15.0% |
| !!! | AACATCATATTCATTATTTT+TGG | + | tig0042400:2887-2906 | Msa1462560:intron | 15.0% |
| !!! | TCCAAACAAATTTTTTTACA+AGG | + | tig0042400:2139-2158 | Msa1462560:intron | 20.0% |
| !!! | TCCTTGTAAAAAAATTTGTT+TGG | - | tig0042400:2143-2162 | None:intergenic | 20.0% |
| !! | ACTATATGTAATCAAAATAG+GGG | - | tig0042400:2528-2547 | None:intergenic | 20.0% |
| !! | GAACTATATGTAATCAAAAT+AGG | - | tig0042400:2530-2549 | None:intergenic | 20.0% |
| !! | TATTACAATGTATTTGGATT+GGG | - | tig0042400:2587-2606 | None:intergenic | 20.0% |
| !! | ATATTACAATGTATTTGGAT+TGG | - | tig0042400:2588-2607 | None:intergenic | 20.0% |
| !! | AATCCAAATACATTGTAATA+TGG | + | tig0042400:2587-2606 | Msa1462560:intron | 20.0% |
| !! | ATCCAAATACATTGTAATAT+GGG | + | tig0042400:2588-2607 | Msa1462560:intron | 20.0% |
| !! | AATTATTGTGATTGTTTCAA+GGG | - | tig0042400:2935-2954 | None:intergenic | 20.0% |
| !!! | TTTTTGTGTAAACAAATCAA+AGG | - | tig0042400:3123-3142 | None:intergenic | 20.0% |
| !! | CATAAAAAAACAATATGATG+TGG | - | tig0042400:3246-3265 | None:intergenic | 20.0% |
| !!! | TCCAAACAAATTTTTTTACA+AGG | + | tig0042400:2139-2158 | Msa1462560:intron | 20.0% |
| !!! | TCCTTGTAAAAAAATTTGTT+TGG | - | tig0042400:2143-2162 | None:intergenic | 20.0% |
| !! | ACTATATGTAATCAAAATAG+GGG | - | tig0042400:2528-2547 | None:intergenic | 20.0% |
| !! | GAACTATATGTAATCAAAAT+AGG | - | tig0042400:2530-2549 | None:intergenic | 20.0% |
| !! | TATTACAATGTATTTGGATT+GGG | - | tig0042400:2587-2606 | None:intergenic | 20.0% |
| !! | ATATTACAATGTATTTGGAT+TGG | - | tig0042400:2588-2607 | None:intergenic | 20.0% |
| !! | AATCCAAATACATTGTAATA+TGG | + | tig0042400:2587-2606 | Msa1462560:intron | 20.0% |
| !! | ATCCAAATACATTGTAATAT+GGG | + | tig0042400:2588-2607 | Msa1462560:intron | 20.0% |
| !! | AATTATTGTGATTGTTTCAA+GGG | - | tig0042400:2935-2954 | None:intergenic | 20.0% |
| !!! | TTTTTGTGTAAACAAATCAA+AGG | - | tig0042400:3123-3142 | None:intergenic | 20.0% |
| !! | CATAAAAAAACAATATGATG+TGG | - | tig0042400:3246-3265 | None:intergenic | 20.0% |
| ! | CTAAAAAAAAACTTGGATTG+TGG | - | tig0042400:1761-1780 | None:intergenic | 25.0% |
| !!! | ACGTCAATTTTTTATTTGCA+TGG | - | tig0042400:2008-2027 | None:intergenic | 25.0% |
| ! | GATTGAATAACATATTCCAA+TGG | + | tig0042400:2413-2432 | Msa1462560:CDS | 25.0% |
| ! | CTATATGTAATCAAAATAGG+GGG | - | tig0042400:2527-2546 | None:intergenic | 25.0% |
| !!! | ACTCTATTTCTAGTGTAATT+TGG | + | tig0042400:2750-2769 | Msa1462560:intron | 25.0% |
| !! | TAATTTGGTAGCTAAGAAAA+TGG | + | tig0042400:2765-2784 | Msa1462560:intron | 25.0% |
| ! | CAATTATTGTGATTGTTTCA+AGG | - | tig0042400:2936-2955 | None:intergenic | 25.0% |
| !! | TTCTTCTGAGAATTCATATA+TGG | - | tig0042400:3064-3083 | None:intergenic | 25.0% |
| ! | GTAAACAAATCAAAGGAATT+AGG | - | tig0042400:3116-3135 | None:intergenic | 25.0% |
| ! | CTAAAAAAAAACTTGGATTG+TGG | - | tig0042400:1761-1780 | None:intergenic | 25.0% |
| !!! | ACGTCAATTTTTTATTTGCA+TGG | - | tig0042400:2008-2027 | None:intergenic | 25.0% |
| ! | GATTGAATAACATATTCCAA+TGG | + | tig0042400:2413-2432 | Msa1462560:CDS | 25.0% |
| ! | CTATATGTAATCAAAATAGG+GGG | - | tig0042400:2527-2546 | None:intergenic | 25.0% |
| !!! | ACTCTATTTCTAGTGTAATT+TGG | + | tig0042400:2750-2769 | Msa1462560:intron | 25.0% |
| !! | TAATTTGGTAGCTAAGAAAA+TGG | + | tig0042400:2765-2784 | Msa1462560:intron | 25.0% |
| ! | CAATTATTGTGATTGTTTCA+AGG | - | tig0042400:2936-2955 | None:intergenic | 25.0% |
| !! | TTCTTCTGAGAATTCATATA+TGG | - | tig0042400:3064-3083 | None:intergenic | 25.0% |
| ! | GTAAACAAATCAAAGGAATT+AGG | - | tig0042400:3116-3135 | None:intergenic | 25.0% |
| !! | AACTTGATCATTGTTGTTTG+AGG | + | tig0042400:1787-1806 | Msa1462560:five_prime_UTR | 30.0% |
| GAAATACAACACTAGATTGA+GGG | - | tig0042400:1856-1875 | None:intergenic | 30.0% | |
| TGAAATACAACACTAGATTG+AGG | - | tig0042400:1857-1876 | None:intergenic | 30.0% | |
| TTGTGATTGTAATTGCTTCA+TGG | + | tig0042400:1877-1896 | Msa1462560:CDS | 30.0% | |
| TGTGATTGTAATTGCTTCAT+GGG | + | tig0042400:1878-1897 | Msa1462560:CDS | 30.0% | |
| GTCATATGTCGTGATTATAA+TGG | + | tig0042400:2060-2079 | Msa1462560:intron | 30.0% | |
| ATTCCCAATATACTTTCCAA+TGG | + | tig0042400:2315-2334 | Msa1462560:CDS | 30.0% | |
| TTCCCAATATACTTTCCAAT+GGG | + | tig0042400:2316-2335 | Msa1462560:CDS | 30.0% | |
| ATAATCTTCACTCTAATTGC+TGG | + | tig0042400:2361-2380 | Msa1462560:CDS | 30.0% | |
| !! | TTAAATTAGGAGCATTCCAT+TGG | - | tig0042400:2432-2451 | None:intergenic | 30.0% |
| AAAATAGGGGGATTAGAATA+AGG | - | tig0042400:2515-2534 | None:intergenic | 30.0% | |
| CACCCATATTACAATGTATT+TGG | - | tig0042400:2593-2612 | None:intergenic | 30.0% | |
| ATGCAAATCTGCAAGAAAAT+TGG | - | tig0042400:2618-2637 | None:intergenic | 30.0% | |
| GATATATAAAGAAGCTTACC+AGG | - | tig0042400:2675-2694 | None:intergenic | 30.0% | |
| AACTATCTTGTAATTCTCTG+TGG | - | tig0042400:3015-3034 | None:intergenic | 30.0% | |
| TAGTTTCACCAAATTTCAGT+TGG | + | tig0042400:3030-3049 | Msa1462560:exon | 30.0% | |
| TGAGAATTCATATATGGCAT+TGG | - | tig0042400:3058-3077 | None:intergenic | 30.0% | |
| !! | AACTTGATCATTGTTGTTTG+AGG | + | tig0042400:1787-1806 | Msa1462560:five_prime_UTR | 30.0% |
| GAAATACAACACTAGATTGA+GGG | - | tig0042400:1856-1875 | None:intergenic | 30.0% | |
| TGAAATACAACACTAGATTG+AGG | - | tig0042400:1857-1876 | None:intergenic | 30.0% | |
| TTGTGATTGTAATTGCTTCA+TGG | + | tig0042400:1877-1896 | Msa1462560:CDS | 30.0% | |
| TGTGATTGTAATTGCTTCAT+GGG | + | tig0042400:1878-1897 | Msa1462560:CDS | 30.0% | |
| GTCATATGTCGTGATTATAA+TGG | + | tig0042400:2060-2079 | Msa1462560:intron | 30.0% | |
| ATTCCCAATATACTTTCCAA+TGG | + | tig0042400:2315-2334 | Msa1462560:CDS | 30.0% | |
| TTCCCAATATACTTTCCAAT+GGG | + | tig0042400:2316-2335 | Msa1462560:CDS | 30.0% | |
| ATAATCTTCACTCTAATTGC+TGG | + | tig0042400:2361-2380 | Msa1462560:CDS | 30.0% | |
| !! | TTAAATTAGGAGCATTCCAT+TGG | - | tig0042400:2432-2451 | None:intergenic | 30.0% |
| AAAATAGGGGGATTAGAATA+AGG | - | tig0042400:2515-2534 | None:intergenic | 30.0% | |
| CACCCATATTACAATGTATT+TGG | - | tig0042400:2593-2612 | None:intergenic | 30.0% | |
| ATGCAAATCTGCAAGAAAAT+TGG | - | tig0042400:2618-2637 | None:intergenic | 30.0% | |
| GATATATAAAGAAGCTTACC+AGG | - | tig0042400:2675-2694 | None:intergenic | 30.0% | |
| AACTATCTTGTAATTCTCTG+TGG | - | tig0042400:3015-3034 | None:intergenic | 30.0% | |
| TAGTTTCACCAAATTTCAGT+TGG | + | tig0042400:3030-3049 | Msa1462560:exon | 30.0% | |
| TGAGAATTCATATATGGCAT+TGG | - | tig0042400:3058-3077 | None:intergenic | 30.0% | |
| !! | TGATCATTGTTGTTTGAGGA+TGG | + | tig0042400:1791-1810 | Msa1462560:exon | 35.0% |
| ACACTAGATTGAGGGTTAAA+AGG | - | tig0042400:1848-1867 | None:intergenic | 35.0% | |
| CAATGAATCATGGCATTCAA+AGG | + | tig0042400:1901-1920 | Msa1462560:CDS | 35.0% | |
| CATCAATTTATTGAGCCACT+TGG | + | tig0042400:2036-2055 | Msa1462560:intron | 35.0% | |
| TATATTGGGAATATGTGAGC+TGG | - | tig0042400:2307-2326 | None:intergenic | 35.0% | |
| TCCCAATATACTTTCCAATG+GGG | + | tig0042400:2317-2336 | Msa1462560:CDS | 35.0% | |
| ! | TCCCCATTGGAAAGTATATT+GGG | - | tig0042400:2321-2340 | None:intergenic | 35.0% |
| ! | TTCCCCATTGGAAAGTATAT+TGG | - | tig0042400:2322-2341 | None:intergenic | 35.0% |
| ATGGCTGCAGCATTTAAATT+AGG | - | tig0042400:2445-2464 | None:intergenic | 35.0% | |
| !! | TGATCATTGTTGTTTGAGGA+TGG | + | tig0042400:1791-1810 | Msa1462560:exon | 35.0% |
| ACACTAGATTGAGGGTTAAA+AGG | - | tig0042400:1848-1867 | None:intergenic | 35.0% | |
| CAATGAATCATGGCATTCAA+AGG | + | tig0042400:1901-1920 | Msa1462560:CDS | 35.0% | |
| CATCAATTTATTGAGCCACT+TGG | + | tig0042400:2036-2055 | Msa1462560:intron | 35.0% | |
| TATATTGGGAATATGTGAGC+TGG | - | tig0042400:2307-2326 | None:intergenic | 35.0% | |
| TCCCAATATACTTTCCAATG+GGG | + | tig0042400:2317-2336 | Msa1462560:CDS | 35.0% | |
| ! | TCCCCATTGGAAAGTATATT+GGG | - | tig0042400:2321-2340 | None:intergenic | 35.0% |
| ! | TTCCCCATTGGAAAGTATAT+TGG | - | tig0042400:2322-2341 | None:intergenic | 35.0% |
| ATGGCTGCAGCATTTAAATT+AGG | - | tig0042400:2445-2464 | None:intergenic | 35.0% | |
| GGATCAAAATCAGTAGCCTT+AGG | + | tig0042400:1822-1841 | Msa1462560:CDS | 40.0% | |
| ATTGAGGGTTAAAAGGCCTA+AGG | - | tig0042400:1841-1860 | None:intergenic | 40.0% | |
| ATCATGGCATTCAAAGGTCT+AGG | + | tig0042400:1907-1926 | Msa1462560:CDS | 40.0% | |
| TCATGGCATTCAAAGGTCTA+GGG | + | tig0042400:1908-1927 | Msa1462560:CDS | 40.0% | |
| !! | GTGATTATAATGGACCACGT+AGG | + | tig0042400:2070-2089 | Msa1462560:intron | 40.0% |
| !! | ACTCTAATTGCTGGTGTTGT+GGG | + | tig0042400:2370-2389 | Msa1462560:CDS | 40.0% |
| GGTTTCACTACATCAGTAAC+TGG | + | tig0042400:2391-2410 | Msa1462560:CDS | 40.0% | |
| CATGTCTTCACTGACAACAT+GGG | + | tig0042400:2462-2481 | Msa1462560:CDS | 40.0% | |
| !! | CATTGGCTCCAACTGAAATT+TGG | - | tig0042400:3041-3060 | None:intergenic | 40.0% |
| GGATCAAAATCAGTAGCCTT+AGG | + | tig0042400:1822-1841 | Msa1462560:CDS | 40.0% | |
| ATTGAGGGTTAAAAGGCCTA+AGG | - | tig0042400:1841-1860 | None:intergenic | 40.0% | |
| ATCATGGCATTCAAAGGTCT+AGG | + | tig0042400:1907-1926 | Msa1462560:CDS | 40.0% | |
| TCATGGCATTCAAAGGTCTA+GGG | + | tig0042400:1908-1927 | Msa1462560:CDS | 40.0% | |
| !! | GTGATTATAATGGACCACGT+AGG | + | tig0042400:2070-2089 | Msa1462560:intron | 40.0% |
| !! | ACTCTAATTGCTGGTGTTGT+GGG | + | tig0042400:2370-2389 | Msa1462560:CDS | 40.0% |
| GGTTTCACTACATCAGTAAC+TGG | + | tig0042400:2391-2410 | Msa1462560:CDS | 40.0% | |
| CATGTCTTCACTGACAACAT+GGG | + | tig0042400:2462-2481 | Msa1462560:CDS | 40.0% | |
| !! | CATTGGCTCCAACTGAAATT+TGG | - | tig0042400:3041-3060 | None:intergenic | 40.0% |
| ! | TGTTGTTTGAGGATGGCTTC+CGG | + | tig0042400:1798-1817 | Msa1462560:exon | 45.0% |
| !!! | GGCTACTGATTTTGATCCTC+CGG | - | tig0042400:1820-1839 | None:intergenic | 45.0% |
| GCTTCATGGGCAATGAATCA+TGG | + | tig0042400:1891-1910 | Msa1462560:CDS | 45.0% | |
| ATTCAAAGGTCTAGGGAAGC+AGG | + | tig0042400:1915-1934 | Msa1462560:CDS | 45.0% | |
| TCACGACATATGACACCAAG+TGG | - | tig0042400:2054-2073 | None:intergenic | 45.0% | |
| TTAGTCACTAACGTCCTACG+TGG | - | tig0042400:2087-2106 | None:intergenic | 45.0% | |
| ! | CACTCTAATTGCTGGTGTTG+TGG | + | tig0042400:2369-2388 | Msa1462560:CDS | 45.0% |
| CCATGTTGTCAGTGAAGACA+TGG | - | tig0042400:2464-2483 | None:intergenic | 45.0% | |
| CCATGTCTTCACTGACAACA+TGG | + | tig0042400:2461-2480 | Msa1462560:CDS | 45.0% | |
| TTAGAATAAGGCTGACCCCA+TGG | - | tig0042400:2503-2522 | None:intergenic | 45.0% | |
| GCATGCAAAGAGATTGAACG+TGG | + | tig0042400:2634-2653 | Msa1462560:CDS | 45.0% | |
| GCAAAGAGATTGAACGTGGT+TGG | + | tig0042400:2638-2657 | Msa1462560:CDS | 45.0% | |
| ! | TGGTTGGACTGATTCAAACC+TGG | + | tig0042400:2654-2673 | Msa1462560:CDS | 45.0% |
| CGTGCATAACAGTTGTGTTG+CGG | - | tig0042400:2962-2981 | None:intergenic | 45.0% | |
| TGCACGACAGTTATCCATGT+TGG | + | tig0042400:2976-2995 | Msa1462560:CDS | 45.0% | |
| GCACGACAGTTATCCATGTT+GGG | + | tig0042400:2977-2996 | Msa1462560:CDS | 45.0% | |
| CACGACAGTTATCCATGTTG+GGG | + | tig0042400:2978-2997 | Msa1462560:CDS | 45.0% | |
| ! | TGTTGTTTGAGGATGGCTTC+CGG | + | tig0042400:1798-1817 | Msa1462560:exon | 45.0% |
| !!! | GGCTACTGATTTTGATCCTC+CGG | - | tig0042400:1820-1839 | None:intergenic | 45.0% |
| GCTTCATGGGCAATGAATCA+TGG | + | tig0042400:1891-1910 | Msa1462560:CDS | 45.0% | |
| ATTCAAAGGTCTAGGGAAGC+AGG | + | tig0042400:1915-1934 | Msa1462560:CDS | 45.0% | |
| TCACGACATATGACACCAAG+TGG | - | tig0042400:2054-2073 | None:intergenic | 45.0% | |
| TTAGTCACTAACGTCCTACG+TGG | - | tig0042400:2087-2106 | None:intergenic | 45.0% | |
| ! | CACTCTAATTGCTGGTGTTG+TGG | + | tig0042400:2369-2388 | Msa1462560:CDS | 45.0% |
| CCATGTTGTCAGTGAAGACA+TGG | - | tig0042400:2464-2483 | None:intergenic | 45.0% | |
| CCATGTCTTCACTGACAACA+TGG | + | tig0042400:2461-2480 | Msa1462560:CDS | 45.0% | |
| TTAGAATAAGGCTGACCCCA+TGG | - | tig0042400:2503-2522 | None:intergenic | 45.0% | |
| GCATGCAAAGAGATTGAACG+TGG | + | tig0042400:2634-2653 | Msa1462560:CDS | 45.0% | |
| GCAAAGAGATTGAACGTGGT+TGG | + | tig0042400:2638-2657 | Msa1462560:CDS | 45.0% | |
| ! | TGGTTGGACTGATTCAAACC+TGG | + | tig0042400:2654-2673 | Msa1462560:CDS | 45.0% |
| CGTGCATAACAGTTGTGTTG+CGG | - | tig0042400:2962-2981 | None:intergenic | 45.0% | |
| TGCACGACAGTTATCCATGT+TGG | + | tig0042400:2976-2995 | Msa1462560:CDS | 45.0% | |
| GCACGACAGTTATCCATGTT+GGG | + | tig0042400:2977-2996 | Msa1462560:CDS | 45.0% | |
| CACGACAGTTATCCATGTTG+GGG | + | tig0042400:2978-2997 | Msa1462560:CDS | 45.0% | |
| TGGGAATATGTGAGCTGGAG+TGG | - | tig0042400:2302-2321 | None:intergenic | 50.0% | |
| CCAGTTGTCATGTTCCCCAT+TGG | - | tig0042400:2334-2353 | None:intergenic | 50.0% | |
| CCAATGGGGAACATGACAAC+TGG | + | tig0042400:2331-2350 | Msa1462560:CDS | 50.0% | |
| GCACTCACTCTGTTAGCCAT+GGG | + | tig0042400:2484-2503 | Msa1462560:CDS | 50.0% | |
| CACTCACTCTGTTAGCCATG+GGG | + | tig0042400:2485-2504 | Msa1462560:CDS | 50.0% | |
| ! | TGATTGTTTCAAGGGTGCGC+TGG | - | tig0042400:2927-2946 | None:intergenic | 50.0% |
| !! | GAACTTCTGAAGCCCCAACA+TGG | - | tig0042400:2993-3012 | None:intergenic | 50.0% |
| TGGGAATATGTGAGCTGGAG+TGG | - | tig0042400:2302-2321 | None:intergenic | 50.0% | |
| CCAGTTGTCATGTTCCCCAT+TGG | - | tig0042400:2334-2353 | None:intergenic | 50.0% | |
| CCAATGGGGAACATGACAAC+TGG | + | tig0042400:2331-2350 | Msa1462560:CDS | 50.0% | |
| GCACTCACTCTGTTAGCCAT+GGG | + | tig0042400:2484-2503 | Msa1462560:CDS | 50.0% | |
| CACTCACTCTGTTAGCCATG+GGG | + | tig0042400:2485-2504 | Msa1462560:CDS | 50.0% | |
| ! | TGATTGTTTCAAGGGTGCGC+TGG | - | tig0042400:2927-2946 | None:intergenic | 50.0% |
| !! | GAACTTCTGAAGCCCCAACA+TGG | - | tig0042400:2993-3012 | None:intergenic | 50.0% |
| TGTTTGAGGATGGCTTCCGG+AGG | + | tig0042400:1801-1820 | Msa1462560:exon | 55.0% | |
| GGCACTCACTCTGTTAGCCA+TGG | + | tig0042400:2483-2502 | Msa1462560:CDS | 55.0% | |
| TGTTTGAGGATGGCTTCCGG+AGG | + | tig0042400:1801-1820 | Msa1462560:exon | 55.0% | |
| GGCACTCACTCTGTTAGCCA+TGG | + | tig0042400:2483-2502 | Msa1462560:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0042400 | gene | 1755 | 3291 | 1755 | ID=Msa1462560;Name=Msa1462560 |
| tig0042400 | mRNA | 1755 | 3291 | 1755 | ID=Msa1462560-mRNA-1;Parent=Msa1462560;Name=Msa1462560-mRNA-1;_AED=0.07;_eAED=0.07;_QI=55|1|1|1|1|1|4|259|165 |
| tig0042400 | exon | 1755 | 1936 | 1755 | ID=Msa1462560-mRNA-1:exon:23714;Parent=Msa1462560-mRNA-1 |
| tig0042400 | exon | 2287 | 2506 | 2287 | ID=Msa1462560-mRNA-1:exon:23715;Parent=Msa1462560-mRNA-1 |
| tig0042400 | exon | 2630 | 2675 | 2630 | ID=Msa1462560-mRNA-1:exon:23716;Parent=Msa1462560-mRNA-1 |
| tig0042400 | exon | 2928 | 3291 | 2928 | ID=Msa1462560-mRNA-1:exon:23717;Parent=Msa1462560-mRNA-1 |
| tig0042400 | five_prime_UTR | 1755 | 1809 | 1755 | ID=Msa1462560-mRNA-1:five_prime_utr;Parent=Msa1462560-mRNA-1 |
| tig0042400 | CDS | 1810 | 1936 | 1810 | ID=Msa1462560-mRNA-1:cds;Parent=Msa1462560-mRNA-1 |
| tig0042400 | CDS | 2287 | 2506 | 2287 | ID=Msa1462560-mRNA-1:cds;Parent=Msa1462560-mRNA-1 |
| tig0042400 | CDS | 2630 | 2675 | 2630 | ID=Msa1462560-mRNA-1:cds;Parent=Msa1462560-mRNA-1 |
| tig0042400 | CDS | 2928 | 3032 | 2928 | ID=Msa1462560-mRNA-1:cds;Parent=Msa1462560-mRNA-1 |
| tig0042400 | three_prime_UTR | 3033 | 3291 | 3033 | ID=Msa1462560-mRNA-1:three_prime_utr;Parent=Msa1462560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
