AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0382530

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0382530 MtrunA17_Chr3g0137791 93.947 826 23 1 1 799 1 826 0.0 1614
Msa0382530 MtrunA17_Chr3g0137821 69.795 831 210 11 1 799 1 822 0.0 1178
Msa0382530 MtrunA17_Chr4g0003411 65.062 810 261 9 5 799 6 808 0.0 1081
Msa0382530 MtrunA17_Chr2g0333021 65.809 816 248 11 4 799 5 809 0.0 1075
Msa0382530 MtrunA17_Chr7g0246481 46.238 824 387 17 4 788 298 1104 0.0 712
Msa0382530 MtrunA17_Chr8g0350951 45.828 827 391 19 4 788 228 1039 0.0 707
Msa0382530 MtrunA17_Chr8g0380631 43.533 866 389 20 4 799 14 849 0.0 679
Msa0382530 MtrunA17_Chr3g0143471 43.218 870 403 20 5 799 13 866 0.0 675
Msa0382530 MtrunA17_Chr5g0398161 43.841 828 402 19 4 788 37 844 0.0 673
Msa0382530 MtrunA17_Chr5g0398171 43.590 819 411 18 4 788 37 838 0.0 665
Msa0382530 MtrunA17_Chr5g0406161 42.260 814 404 15 32 799 79 872 0.0 662
Msa0382530 MtrunA17_Chr2g0330431 43.284 804 403 18 1 799 1 756 0.0 627
Msa0382530 MtrunA17_Chr8g0341931 41.948 801 406 21 4 799 7 753 0.0 584
Msa0382530 MtrunA17_Chr1g0192401 31.727 249 133 11 484 722 733 954 1.32e-21 100
Msa0382530 MtrunA17_Chr1g0192401 31.064 235 119 9 190 411 355 559 5.33e-18 89.4
Msa0382530 MtrunA17_Chr2g0295411 32.836 201 103 6 484 679 783 956 1.82e-19 94.0
Msa0382530 MtrunA17_Chr2g0295411 28.627 255 127 10 190 422 381 602 1.03e-15 82.0
Msa0382530 MtrunA17_Chr5g0406151 50.000 68 30 1 308 375 16 79 2.07e-18 80.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0382530 AT3G15730.1 63.647 817 267 9 3 799 4 810 0.0 1073
Msa0382530 AT1G52570.1 62.822 815 275 11 4 799 5 810 0.0 1046
Msa0382530 AT1G52570.3 62.822 815 275 11 4 799 5 810 0.0 1046
Msa0382530 AT1G52570.2 62.822 815 275 11 4 799 5 810 0.0 1046
Msa0382530 AT5G25370.1 60.949 822 288 10 4 799 6 820 0.0 1000
Msa0382530 AT5G25370.3 60.949 822 288 10 4 799 6 820 0.0 1000
Msa0382530 AT5G25370.2 60.949 822 288 10 4 799 6 820 0.0 1000
Msa0382530 AT5G25370.4 63.588 747 260 9 58 799 6 745 0.0 960
Msa0382530 AT4G11830.2 44.604 834 399 20 1 788 30 846 0.0 704
Msa0382530 AT4G11830.1 46.332 777 373 18 39 788 55 814 0.0 699
Msa0382530 AT2G42010.1 44.689 819 404 16 4 788 270 1073 0.0 696
Msa0382530 AT4G11840.1 44.072 835 400 18 2 788 41 856 0.0 694
Msa0382530 AT2G42010.2 43.957 844 399 18 4 788 270 1098 0.0 687
Msa0382530 AT4G11850.1 44.444 828 403 17 2 788 37 848 0.0 685
Msa0382530 AT4G00240.1 44.175 824 401 16 4 788 114 917 0.0 684
Msa0382530 AT4G11840.2 43.682 831 379 17 2 788 41 826 0.0 681
Msa0382530 AT4G00240.3 45.385 780 391 14 29 788 1 765 0.0 679
Msa0382530 AT4G00240.2 45.714 770 383 14 39 788 128 882 0.0 679
Msa0382530 AT4G35790.2 43.618 807 396 13 31 799 72 857 0.0 671
Msa0382530 AT4G35790.1 43.276 818 394 14 31 799 72 868 0.0 664
Msa0382530 AT1G55180.1 41.563 806 407 21 5 799 10 762 0.0 608
Msa0382530 AT1G55180.2 42.038 785 391 20 29 799 6 740 0.0 606
Msa0382530 AT4G35790.3 42.326 619 310 8 31 613 72 679 1.77e-168 503
Msa0382530 AT4G11830.4 44.026 611 294 13 1 576 30 627 1.10e-167 499
Msa0382530 AT4G11830.3 43.760 601 290 13 1 566 30 617 1.89e-163 488
Msa0382530 AT3G05630.1 28.099 726 352 31 116 744 304 956 6.13e-44 172
Msa0382530 AT3G16785.3 35.961 203 96 7 483 679 756 930 1.00e-21 101
Msa0382530 AT3G16785.3 31.250 224 102 8 205 411 389 577 3.90e-18 90.1
Msa0382530 AT3G16785.2 35.961 203 96 7 483 679 756 930 1.00e-21 101
Msa0382530 AT3G16785.2 31.250 224 102 8 205 411 389 577 3.90e-18 90.1
Msa0382530 AT3G16785.6 35.961 203 96 7 483 679 756 930 1.02e-21 101
Msa0382530 AT3G16785.6 31.250 224 102 8 205 411 389 577 3.23e-18 90.5
Msa0382530 AT3G16785.5 35.961 203 96 7 483 679 756 930 1.02e-21 101
Msa0382530 AT3G16785.5 31.250 224 102 8 205 411 389 577 3.23e-18 90.5
Msa0382530 AT3G16785.1 35.961 203 96 7 483 679 756 930 1.02e-21 101
Msa0382530 AT3G16785.1 31.250 224 102 8 205 411 389 577 3.63e-18 90.1
Msa0382530 AT3G16785.4 35.961 203 96 7 483 679 756 930 1.04e-21 101
Msa0382530 AT3G16785.4 31.250 224 102 8 205 411 389 577 2.86e-18 90.5

Find 168 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAAAATCACCTGGGAAATT+TGG 0.100944 3_1:+85164082 None:intergenic
TTAATGCAATTCAAACTTTC+TGG 0.122895 3_1:+85162611 None:intergenic
TCCCTTACCTATCATCATTT+TGG 0.178826 3_1:+85163067 None:intergenic
TTGTATTTGAACATGGATTT+TGG 0.185371 3_1:+85164825 None:intergenic
GCTTGAACTGAAGCACTTTC+AGG 0.203277 3_1:+85163317 None:intergenic
GAAAGGTTTCATTCCATTTC+GGG 0.221154 3_1:+85165025 None:intergenic
CCCATTGGAGCGACTCTAAT+TGG 0.224022 3_1:-85164946 Msa0382530:CDS
AGCAGTTATGGTTCCATTAT+TGG 0.224317 3_1:+85162484 None:intergenic
AATCCATATATTTGTCCTTT+TGG 0.234668 3_1:+85162695 None:intergenic
ATCGATGCTGGTGCTGCTTC+TGG 0.242139 3_1:-85163644 Msa0382530:CDS
GTCTATTACTGGTGGCTATA+TGG 0.261291 3_1:+85162720 None:intergenic
CATCTTGGTAAAGAGTAATT+TGG 0.273836 3_1:+85164704 None:intergenic
AAAACATTTCACAGATTATT+GGG 0.279095 3_1:-85165113 Msa0382530:intron
TGAAAGGTTTCATTCCATTT+CGG 0.287963 3_1:+85165024 None:intergenic
TTAATGTTCTTATGCTTGTT+TGG 0.298166 3_1:-85164450 Msa0382530:CDS
CCAACAGAAGCCGCTGAAAA+AGG 0.298342 3_1:-85163608 Msa0382530:CDS
CCATTATTGGTTACTTGTAT+TGG 0.306443 3_1:+85162497 None:intergenic
CCAATACAAGTAACCAATAA+TGG 0.313741 3_1:-85162497 Msa0382530:CDS
GATACTAAGGCTAAGATTCT+AGG 0.315033 3_1:-85162437 Msa0382530:CDS
TGTCAACAATTATAGTCTTC+TGG 0.324805 3_1:+85164251 None:intergenic
AAGAACATTAACACCTTCAT+TGG 0.328996 3_1:+85164462 None:intergenic
ACATTCTTTAAACAAAATAA+TGG 0.329312 3_1:-85164730 Msa0382530:CDS
GTTGTTCTTGTTGACTTGTT+TGG 0.332002 3_1:+85164517 None:intergenic
TGGAGGAAGGTACTCAGATT+TGG 0.345102 3_1:+85162412 None:intergenic
GGAACCATAACTGCTCTTCC+AGG 0.349450 3_1:-85162476 Msa0382530:CDS
CCACCAAAAGGACAAATATA+TGG 0.350161 3_1:-85162698 Msa0382530:CDS
CCCTTTATGACTTGTTCAAC+TGG 0.351702 3_1:+85164910 None:intergenic
GTTGGAAGAACTAGAATGAT+AGG 0.353330 3_1:-85165051 Msa0382530:CDS
TAATGTTCTTATGCTTGTTT+GGG 0.358547 3_1:-85164449 Msa0382530:CDS
ACTCCATCCAATGGAATATA+CGG 0.365105 3_1:+85164658 None:intergenic
GATATTAAAGTTGAGGATAT+TGG 0.365230 3_1:-85163449 Msa0382530:CDS
TCCAGTTGAACAAGTCATAA+AGG 0.366172 3_1:-85164911 Msa0382530:CDS
ATATAATCACTGTCAGGTTC+TGG 0.366661 3_1:+85163131 None:intergenic
CTTTAAGAAAGATGGCTTGA+TGG 0.371228 3_1:-85164404 Msa0382530:CDS
CAGTTCAAGCAATATTAGAT+TGG 0.371630 3_1:-85163304 Msa0382530:CDS
TTTAGTCCTTGTGACCAGTT+TGG 0.378654 3_1:+85164781 None:intergenic
GTTCCTGACTTTAAGAAAGA+TGG 0.382115 3_1:-85164412 Msa0382530:CDS
CATGGCTAGGTGGTGAGAAT+TGG 0.390572 3_1:+85162392 None:intergenic
TAAAATGACAAGTAATCTCT+TGG 0.395875 3_1:+85163209 None:intergenic
AGAGTACAATTACATGGAAA+TGG 0.400127 3_1:+85165786 None:intergenic
TTACTGGTGGCTATATGGTT+TGG 0.403321 3_1:+85162725 None:intergenic
CAAGATGCACATGTTCTAGA+TGG 0.408428 3_1:-85164688 Msa0382530:CDS
GATGATGAATACATAATCAT+TGG 0.412861 3_1:-85162818 Msa0382530:CDS
TATGAGCACCTTGGAGATAT+TGG 0.417376 3_1:-85162656 Msa0382530:CDS
GTTCATGCCAAAATGATGAT+AGG 0.420607 3_1:-85163074 Msa0382530:intron
AGAATCTTAGCCTTAGTATC+AGG 0.421693 3_1:+85162440 None:intergenic
TTACATGGAAATGGAGGTTA+AGG 0.423456 3_1:+85165795 None:intergenic
CAAGAACAACCATCACTCTT+GGG 0.423882 3_1:-85164504 Msa0382530:CDS
CGGCTTCTGTTGGATCTTGA+GGG 0.427130 3_1:+85163618 None:intergenic
AAATCCTGGAAGAGCAGTTA+TGG 0.432056 3_1:+85162472 None:intergenic
GCACTTTCAGGTATACCTTC+TGG 0.435666 3_1:+85163329 None:intergenic
ATCTTCAGTGACAACTCCTT+TGG 0.436891 3_1:+85163410 None:intergenic
GCGGCTTCTGTTGGATCTTG+AGG 0.438003 3_1:+85163617 None:intergenic
AAGCCATCTTTCTTAAAGTC+AGG 0.443766 3_1:+85164409 None:intergenic
AGATTGGCAAAGAAGGACTA+TGG 0.445851 3_1:-85163288 Msa0382530:CDS
CAATATTAGATTGGCAAAGA+AGG 0.446472 3_1:-85163295 Msa0382530:CDS
GAATGATAGGTAGCCCGAAA+TGG 0.447072 3_1:-85165038 Msa0382530:CDS
CCAATTAGAGTCGCTCCAAT+GGG 0.447711 3_1:+85164946 None:intergenic
GATATTCATTGTAAACTAGA+AGG 0.448111 3_1:-85163839 Msa0382530:CDS
GTTCCGTATATTCCATTGGA+TGG 0.448817 3_1:-85164661 Msa0382530:CDS
TTCTAGGTAGTTCATATGGT+TGG 0.454363 3_1:-85163481 Msa0382530:CDS
GATACACTACAAACTCTTGC+CGG 0.455373 3_1:-85165603 Msa0382530:CDS
CTTGTTTGGATCTCTAATCA+AGG 0.457534 3_1:+85164531 None:intergenic
GTGACAACTCCTTTGGTATG+AGG 0.458272 3_1:+85163417 None:intergenic
CTTTGAGTATATGTCCCAAT+TGG 0.459345 3_1:+85162565 None:intergenic
ACAAGAACAACCATCACTCT+TGG 0.459719 3_1:-85164505 Msa0382530:CDS
CCAGTTGAACAAGTCATAAA+GGG 0.460625 3_1:-85164910 Msa0382530:CDS
CACAACACATCCCATGCAAC+AGG 0.462297 3_1:+85163815 None:intergenic
CGAAACATGCTTGAAGGTAG+TGG 0.463688 3_1:+85163746 None:intergenic
AGAGACAGTGAGATTGCAAT+AGG 0.465168 3_1:-85162758 Msa0382530:CDS
TGAGGAACTCCTTGAAATCC+TGG 0.466088 3_1:+85164754 None:intergenic
ATATCATGCCATGGCTCTCT+AGG 0.466709 3_1:+85163857 None:intergenic
TTCTGTTCCGTATATTCCAT+TGG 0.467036 3_1:-85164665 Msa0382530:CDS
ATTGTTAGCAAGATTGAAGC+TGG 0.474341 3_1:-85163389 Msa0382530:CDS
CTAAAGAGTCCAGGATTTCA+AGG 0.476603 3_1:-85164763 Msa0382530:CDS
CATTGATCTTTGATTTATGT+TGG 0.476676 3_1:+85162790 None:intergenic
TCAGGAAAACATTCAAATCC+TGG 0.477356 3_1:+85162458 None:intergenic
GTTGAAGCCCTTCAAAGAAA+AGG 0.478206 3_1:-85163245 Msa0382530:CDS
CAGTTTCTCTCCACATGGCT+AGG 0.479672 3_1:+85162379 None:intergenic
TCAGGTTCTGGTGCCTCTGT+AGG 0.480853 3_1:+85163143 None:intergenic
AACTGGTTGGTCTGTTTACA+CGG 0.480935 3_1:-85164560 Msa0382530:CDS
CATCTAGAACATGTGCATCT+TGG 0.481308 3_1:+85164689 None:intergenic
ATGGATTTAGACGTGCACTA+TGG 0.481715 3_1:-85162679 Msa0382530:CDS
CATTTCACAGATTATTGGGA+TGG 0.486910 3_1:-85165109 Msa0382530:intron
TCCAATTAGAGTCGCTCCAA+TGG 0.488605 3_1:+85164945 None:intergenic
GATTTAGACAAAGCAAGAGT+TGG 0.492961 3_1:-85165069 Msa0382530:CDS
GGCTAGGTGGTGAGAATTGG+AGG 0.496635 3_1:+85162395 None:intergenic
AAAATGACAAGTAATCTCTT+GGG 0.497438 3_1:+85163210 None:intergenic
TATTCACGAAACATGCTTGA+AGG 0.498456 3_1:+85163740 None:intergenic
GTATGTGCCGGGAAAATGTT+GGG 0.500103 3_1:-85164629 Msa0382530:CDS
TTGTTTAGATCGATCGATGC+TGG 0.502376 3_1:-85163656 Msa0382530:CDS
GATGGAAGAAGTATAGTTCA+AGG 0.503461 3_1:-85164304 Msa0382530:CDS
GTGGGATTGATCTTTGTGAT+GGG 0.506802 3_1:-85164174 Msa0382530:CDS
CATGGAAATGGAGGTTAAGG+AGG 0.508674 3_1:+85165798 None:intergenic
AGGGCAACATAGTGAATACA+TGG 0.511698 3_1:-85164891 Msa0382530:CDS
GCTCTAATATAATCACTGTC+AGG 0.514466 3_1:+85163125 None:intergenic
GCTTGATGTGACTATATATG+AGG 0.515858 3_1:-85165628 Msa0382530:CDS
TTTGACAGTGAATATAATGT+TGG 0.517344 3_1:+85164978 None:intergenic
TGGAGTAGAACGGTATGTGC+CGG 0.519752 3_1:-85164641 Msa0382530:CDS
CAACATAAATCAAAGATCAA+TGG 0.522850 3_1:-85162789 Msa0382530:CDS
AACTAGAAGGACCTGTTGCA+TGG 0.522952 3_1:-85163826 Msa0382530:CDS
GGAGTAGAACGGTATGTGCC+GGG 0.525843 3_1:-85164640 Msa0382530:CDS
GGTGGGATTGATCTTTGTGA+TGG 0.527896 3_1:-85164175 Msa0382530:CDS
TTTCATCAACCAAATTTCCC+AGG 0.530381 3_1:-85164091 Msa0382530:intron
GGTATACCTTCTGGCCACAT+TGG 0.533593 3_1:+85163338 None:intergenic
CGGCAAATCAAAACAACACA+TGG 0.534970 3_1:-85163688 Msa0382530:CDS
CTTAAGAAGAAAGCCAATGA+AGG 0.539673 3_1:-85164475 Msa0382530:CDS
TCTTACCCTCTCGGTTTCCA+AGG 0.540213 3_1:+85163183 None:intergenic
CAAAGATGGGAAAAGCAAGT+TGG 0.540379 3_1:-85163782 Msa0382530:CDS
ACTATACTTCTTCCATCACC+AGG 0.545798 3_1:+85164310 None:intergenic
GCAGAGATCGAAATTGCATC+CGG 0.546902 3_1:+85165584 None:intergenic
CTTCCATCACCAGGGTTACG+TGG 0.548889 3_1:+85164319 None:intergenic
TTGATAGAATTAATCAGCAA+TGG 0.551114 3_1:+85162332 None:intergenic
ATTTCACAGATTATTGGGAT+GGG 0.555183 3_1:-85165108 Msa0382530:intron
ACTAGAAGGACCTGTTGCAT+GGG 0.560087 3_1:-85163825 Msa0382530:CDS
GTCATGTTGCACTTACTACA+CGG 0.562058 3_1:-85165654 Msa0382530:CDS
GTGGATCATCGTCCAATACA+AGG 0.562412 3_1:-85164853 Msa0382530:CDS
TTCATATGGTTGGAAATCAT+CGG 0.572489 3_1:-85163471 Msa0382530:CDS
ACCAGTAATAGACCACCAAA+AGG 0.573701 3_1:-85162710 Msa0382530:CDS
ATGGGTTAATATATTAGATG+TGG 0.574499 3_1:-85164872 Msa0382530:CDS
GTCATTCCAATGTGGCCAGA+AGG 0.574690 3_1:-85163344 Msa0382530:CDS
TACCGTTCTACTCCATCCAA+TGG 0.576822 3_1:+85164649 None:intergenic
ATGGAAATGGAGGTTAAGGA+GGG 0.580560 3_1:+85165799 None:intergenic
TGCTTTGCACCTCATACCAA+AGG 0.582854 3_1:-85163426 Msa0382530:CDS
TGACAAGTAATCTCTTGGGT+TGG 0.586202 3_1:+85163214 None:intergenic
GTCAAACAAGATAACCCCAT+TGG 0.587028 3_1:-85164961 Msa0382530:CDS
ATCATCGGATATTAAAGTTG+AGG 0.587336 3_1:-85163456 Msa0382530:CDS
AAGAAGCTCCCCAAGAGTGA+TGG 0.594868 3_1:+85164495 None:intergenic
TCACAAGGACTAAAGAGTCC+AGG 0.595640 3_1:-85164772 Msa0382530:CDS
TCGTCGAATAGCGTTTATGT+AGG 0.595975 3_1:+85163538 None:intergenic
CAATTTCGATCTCTGCAACA+AGG 0.597917 3_1:-85165577 Msa0382530:intron
TGAAAACAAAGGATGTTCCA+TGG 0.602384 3_1:+85164141 None:intergenic
TATTGCCTTGGAAACCGAGA+GGG 0.604275 3_1:-85163188 Msa0382530:CDS
TGCCCACGTAACCCTGGTGA+TGG 0.604924 3_1:-85164322 Msa0382530:CDS
GGTATGTGCCGGGAAAATGT+TGG 0.606197 3_1:-85164630 Msa0382530:CDS
TTTCTCTCCACATGGCTAGG+TGG 0.613613 3_1:+85162382 None:intergenic
GTGAGAATTGTATTTGAACA+TGG 0.616949 3_1:+85164818 None:intergenic
TTACAATGAATATCATGCCA+TGG 0.618761 3_1:+85163848 None:intergenic
ACATTCAGTTTCTCTCCACA+TGG 0.623036 3_1:+85162374 None:intergenic
ATGTGCAGAGTAAATGTGAA+AGG 0.624116 3_1:+85165008 None:intergenic
ATAAATCAAAGATCAATGGA+TGG 0.626562 3_1:-85162785 Msa0382530:CDS
TTCCATCACCAGGGTTACGT+GGG 0.629779 3_1:+85164320 None:intergenic
GTACAATTACATGGAAATGG+AGG 0.633738 3_1:+85165789 None:intergenic
AAGAACAACCATCACTCTTG+GGG 0.634263 3_1:-85164503 Msa0382530:CDS
GTATTCAAAGTTGAAAACAA+AGG 0.635550 3_1:+85164130 None:intergenic
GCACTATGGTATGAGCACCT+TGG 0.638088 3_1:-85162665 Msa0382530:CDS
AATGATCCAAACTGGTCACA+AGG 0.638447 3_1:-85164787 Msa0382530:CDS
CAATTGGGACATATACTCAA+AGG 0.640794 3_1:-85162564 Msa0382530:CDS
AGGTGGTGAGAATTGGAGGA+AGG 0.643329 3_1:+85162399 None:intergenic
GAATGAATATACTCCTACAG+AGG 0.643986 3_1:-85163156 Msa0382530:CDS
TCATGTTGCACTTACTACAC+GGG 0.647685 3_1:-85165653 Msa0382530:CDS
TTGTATCACCAATATCTCCA+AGG 0.650254 3_1:+85162648 None:intergenic
CTTGTATTGGATAATGCATG+AGG 0.661800 3_1:+85162510 None:intergenic
TCGTGTATCGAATGTTGCCA+CGG 0.661868 3_1:-85163708 Msa0382530:CDS
AAAGATTCCTGCTTAAAACA+AGG 0.666302 3_1:+85162303 None:intergenic
ATTCTCACCACCTAGCCATG+TGG 0.671398 3_1:-85162389 Msa0382530:exon
TTCCATTGGATGGAGTAGAA+CGG 0.671871 3_1:-85164651 Msa0382530:CDS
GGTGCTTCTATTAACAAAGG+TGG 0.672280 3_1:-85163881 Msa0382530:CDS
ACAGGTGCTTCTATTAACAA+AGG 0.672622 3_1:-85163884 Msa0382530:intron
AAGTTGCTAGTTCTGCACAA+TGG 0.673752 3_1:-85164225 Msa0382530:CDS
TGATGGGAGATATGATACCA+TGG 0.695563 3_1:-85164158 Msa0382530:CDS
CTATACTTCTTCCATCACCA+GGG 0.698859 3_1:+85164311 None:intergenic
AAGGTGGTCCTAGAGAGCCA+TGG 0.705923 3_1:-85163865 Msa0382530:CDS
GGGCAACATAGTGAATACAT+GGG 0.707757 3_1:-85164890 Msa0382530:CDS
CAATTAGAGTCGCTCCAATG+GGG 0.713373 3_1:+85164947 None:intergenic
TTATTGCCTTGGAAACCGAG+AGG 0.718876 3_1:-85163189 Msa0382530:CDS
TGTACATTGTCATTCCAATG+TGG 0.747438 3_1:-85163352 Msa0382530:CDS
GATCATCGTCCAATACAAGG+CGG 0.779275 3_1:-85164850 Msa0382530:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACATTCTTTAAACAAAATAA+TGG - chr3_1:85163328-85163347 Msa0382530:CDS 15.0%
!! AAAATATAAAATATTCCAAC+AGG - chr3_1:85164156-85164175 Msa0382530:CDS 15.0%
!! AATAAATGTAAAATAGAAAC+AGG + chr3_1:85165033-85165052 None:intergenic 15.0%
!!! TAATAAATTTTCTTTTGCAA+AGG + chr3_1:85165174-85165193 None:intergenic 15.0%
!! CAATCTACTTAAAATGAAAT+TGG + chr3_1:85162544-85162563 None:intergenic 20.0%
!! TGACAAATTCATTAGAAAAA+AGG + chr3_1:85162611-85162630 None:intergenic 20.0%
!! AAAAACATTTCACAGATTAT+TGG - chr3_1:85162944-85162963 Msa0382530:intron 20.0%
!! AAAACATTTCACAGATTATT+GGG - chr3_1:85162945-85162964 Msa0382530:intron 20.0%
!!! ATTGAAAATCAGTATTTTCT+AGG - chr3_1:85164561-85164580 Msa0382530:CDS 20.0%
!!! TTGAACTTCAAATTTTATAG+AGG + chr3_1:85165803-85165822 None:intergenic 20.0%
!! TAAGTAAGAGTACAATTACA+TGG + chr3_1:85162281-85162300 None:intergenic 25.0%
! CTTTCAAATTTCGTAAACAA+GGG - chr3_1:85162714-85162733 Msa0382530:CDS 25.0%
! TACAGATTATATAGTCAACA+AGG + chr3_1:85162845-85162864 None:intergenic 25.0%
! TAGGTGTTAGAATGTATAAA+GGG + chr3_1:85162915-85162934 None:intergenic 25.0%
! TTAGGTGTTAGAATGTATAA+AGG + chr3_1:85162916-85162935 None:intergenic 25.0%
!!! AAATGTTTTTACATGTCGTT+AGG + chr3_1:85162934-85162953 None:intergenic 25.0%
! TTTGACAGTGAATATAATGT+TGG + chr3_1:85163083-85163102 None:intergenic 25.0%
!! ATGGGTTAATATATTAGATG+TGG - chr3_1:85163186-85163205 Msa0382530:CDS 25.0%
!! TTGTATTTGAACATGGATTT+TGG + chr3_1:85163236-85163255 None:intergenic 25.0%
! ATGTTAAAAATGATCCAAAC+TGG - chr3_1:85163263-85163282 Msa0382530:CDS 25.0%
!!! TTTTGTTTAAAGAATGTGTG+AGG + chr3_1:85163325-85163344 None:intergenic 25.0%
!!! AAGCATTTTATTTGCATAAC+TGG - chr3_1:85163481-85163500 Msa0382530:CDS 25.0%
!!! ATTTTATTTGCATAACTGGT+TGG - chr3_1:85163485-85163504 Msa0382530:CDS 25.0%
! TTAATGTTCTTATGCTTGTT+TGG - chr3_1:85163608-85163627 Msa0382530:CDS 25.0%
! TAATGTTCTTATGCTTGTTT+GGG - chr3_1:85163609-85163628 Msa0382530:CDS 25.0%
! GTATTCAAAGTTGAAAACAA+AGG + chr3_1:85163931-85163950 None:intergenic 25.0%
! AGGACTTAATTATGAAATGT+TGG - chr3_1:85164113-85164132 Msa0382530:CDS 25.0%
! GATATTCATTGTAAACTAGA+AGG - chr3_1:85164219-85164238 Msa0382530:CDS 25.0%
!! TATTTTCTAGGTAGTTCATA+TGG - chr3_1:85164573-85164592 Msa0382530:CDS 25.0%
! GATATTAAAGTTGAGGATAT+TGG - chr3_1:85164609-85164628 Msa0382530:CDS 25.0%
! AAAATGACAAGTAATCTCTT+GGG + chr3_1:85164851-85164870 None:intergenic 25.0%
! TAAAATGACAAGTAATCTCT+TGG + chr3_1:85164852-85164871 None:intergenic 25.0%
! GAAACAGGTAATATATATGT+TGG + chr3_1:85165018-85165037 None:intergenic 25.0%
!!! ATTGGAAAGTGTCAATTTAA+TGG + chr3_1:85165136-85165155 None:intergenic 25.0%
! GATGATGAATACATAATCAT+TGG - chr3_1:85165240-85165259 Msa0382530:intron 25.0%
!! CATTGATCTTTGATTTATGT+TGG + chr3_1:85165271-85165290 None:intergenic 25.0%
! CAACATAAATCAAAGATCAA+TGG - chr3_1:85165269-85165288 Msa0382530:intron 25.0%
! ATAAATCAAAGATCAATGGA+TGG - chr3_1:85165273-85165292 Msa0382530:intron 25.0%
!! AATCCATATATTTGTCCTTT+TGG + chr3_1:85165366-85165385 None:intergenic 25.0%
! TTAATGCAATTCAAACTTTC+TGG + chr3_1:85165450-85165469 None:intergenic 25.0%
! TTGATAGAATTAATCAGCAA+TGG + chr3_1:85165729-85165748 None:intergenic 25.0%
!! ACTTCAAATTTTATAGAGGT+AGG + chr3_1:85165799-85165818 None:intergenic 25.0%
AGAGTACAATTACATGGAAA+TGG + chr3_1:85162275-85162294 None:intergenic 30.0%
GCTTTCAAATTTCGTAAACA+AGG - chr3_1:85162713-85162732 Msa0382530:CDS 30.0%
AATATGTGAAGATATACCTC+TGG + chr3_1:85162813-85162832 None:intergenic 30.0%
ATTTCACAGATTATTGGGAT+GGG - chr3_1:85162950-85162969 Msa0382530:intron 30.0%
TGAAAGGTTTCATTCCATTT+CGG + chr3_1:85163037-85163056 None:intergenic 30.0%
GTGAGAATTGTATTTGAACA+TGG + chr3_1:85163243-85163262 None:intergenic 30.0%
CATCTTGGTAAAGAGTAATT+TGG + chr3_1:85163357-85163376 None:intergenic 30.0%
AAGAACATTAACACCTTCAT+TGG + chr3_1:85163599-85163618 None:intergenic 30.0%
TGTCAACAATTATAGTCTTC+TGG + chr3_1:85163810-85163829 None:intergenic 30.0%
!! AGAACAATCACAAGTTTTGT+TGG - chr3_1:85163862-85163881 Msa0382530:CDS 30.0%
GCATGCATATTTACAATCTT+AGG - chr3_1:85164093-85164112 Msa0382530:CDS 30.0%
TTACAATGAATATCATGCCA+TGG + chr3_1:85164213-85164232 None:intergenic 30.0%
TTCATATGGTTGGAAATCAT+CGG - chr3_1:85164587-85164606 Msa0382530:CDS 30.0%
ATCATCGGATATTAAAGTTG+AGG - chr3_1:85164602-85164621 Msa0382530:CDS 30.0%
CAGTTCAAGCAATATTAGAT+TGG - chr3_1:85164754-85164773 Msa0382530:CDS 30.0%
CAATATTAGATTGGCAAAGA+AGG - chr3_1:85164763-85164782 Msa0382530:CDS 30.0%
! TCTGATTCCTTTTCTTTGAA+GGG + chr3_1:85164823-85164842 None:intergenic 30.0%
!!! TACTTGTCATTTTATTGCCT+TGG - chr3_1:85164858-85164877 Msa0382530:CDS 30.0%
AGGTGTATGTGCTAATTAAT+TGG + chr3_1:85165154-85165173 None:intergenic 30.0%
! CCATTATTGGTTACTTGTAT+TGG + chr3_1:85165564-85165583 None:intergenic 30.0%
CCAATACAAGTAACCAATAA+TGG - chr3_1:85165561-85165580 Msa0382530:intron 30.0%
! TGAATGTTTTCCTGATACTA+AGG - chr3_1:85165608-85165627 Msa0382530:CDS 30.0%
AAAGATTCCTGCTTAAAACA+AGG + chr3_1:85165758-85165777 None:intergenic 30.0%
TTACATGGAAATGGAGGTTA+AGG + chr3_1:85162266-85162285 None:intergenic 35.0%
GTACAATTACATGGAAATGG+AGG + chr3_1:85162272-85162291 None:intergenic 35.0%
!! TGTTTTTATTGCACACAGCA+AGG - chr3_1:85162354-85162373 Msa0382530:three_prime_UTR 35.0%
! GTTTTTATTGCACACAGCAA+GGG - chr3_1:85162355-85162374 Msa0382530:three_prime_UTR 35.0%
GCTTGATGTGACTATATATG+AGG - chr3_1:85162430-85162449 Msa0382530:CDS 35.0%
!! CTCTGTGTATTTGCTGATTT+CGG - chr3_1:85162691-85162710 Msa0382530:CDS 35.0%
CATTTCACAGATTATTGGGA+TGG - chr3_1:85162949-85162968 Msa0382530:intron 35.0%
GATTTAGACAAAGCAAGAGT+TGG - chr3_1:85162989-85163008 Msa0382530:intron 35.0%
GTTGGAAGAACTAGAATGAT+AGG - chr3_1:85163007-85163026 Msa0382530:intron 35.0%
GAAAGGTTTCATTCCATTTC+GGG + chr3_1:85163036-85163055 None:intergenic 35.0%
ATGTGCAGAGTAAATGTGAA+AGG + chr3_1:85163053-85163072 None:intergenic 35.0%
TCCAGTTGAACAAGTCATAA+AGG - chr3_1:85163147-85163166 Msa0382530:CDS 35.0%
CCAGTTGAACAAGTCATAAA+GGG - chr3_1:85163148-85163167 Msa0382530:CDS 35.0%
TTCTGTTCCGTATATTCCAT+TGG - chr3_1:85163393-85163412 Msa0382530:CDS 35.0%
ACTCCATCCAATGGAATATA+CGG + chr3_1:85163403-85163422 None:intergenic 35.0%
CTTGTTTGGATCTCTAATCA+AGG + chr3_1:85163530-85163549 None:intergenic 35.0%
!! GTTGTTCTTGTTGACTTGTT+TGG + chr3_1:85163544-85163563 None:intergenic 35.0%
CTTAAGAAGAAAGCCAATGA+AGG - chr3_1:85163583-85163602 Msa0382530:CDS 35.0%
! GTTCCTGACTTTAAGAAAGA+TGG - chr3_1:85163646-85163665 Msa0382530:CDS 35.0%
AAGCCATCTTTCTTAAAGTC+AGG + chr3_1:85163652-85163671 None:intergenic 35.0%
! CTTTAAGAAAGATGGCTTGA+TGG - chr3_1:85163654-85163673 Msa0382530:CDS 35.0%
! GATGGAAGAAGTATAGTTCA+AGG - chr3_1:85163754-85163773 Msa0382530:CDS 35.0%
!!! ACAATCACAAGTTTTGTTGG+TGG - chr3_1:85163865-85163884 Msa0382530:CDS 35.0%
!!! CAATCACAAGTTTTGTTGGT+GGG - chr3_1:85163866-85163885 Msa0382530:CDS 35.0%
TGAAAACAAAGGATGTTCCA+TGG + chr3_1:85163920-85163939 None:intergenic 35.0%
TTTCATCAACCAAATTTCCC+AGG - chr3_1:85163967-85163986 Msa0382530:intron 35.0%
AACTAGTTCCAAAATCACCT+GGG + chr3_1:85163987-85164006 None:intergenic 35.0%
AAACTAGTTCCAAAATCACC+TGG + chr3_1:85163988-85164007 None:intergenic 35.0%
!! TTGTTAATAGAAGCACCTGT+TGG + chr3_1:85164174-85164193 None:intergenic 35.0%
ACAGGTGCTTCTATTAACAA+AGG - chr3_1:85164174-85164193 Msa0382530:CDS 35.0%
! TGTGCAATTTTGAGCAAAGA+TGG - chr3_1:85164262-85164281 Msa0382530:CDS 35.0%
! GTGCAATTTTGAGCAAAGAT+GGG - chr3_1:85164263-85164282 Msa0382530:CDS 35.0%
TATTCACGAAACATGCTTGA+AGG + chr3_1:85164321-85164340 None:intergenic 35.0%
!!! AGTAACAAGACCTTTTTCAG+CGG + chr3_1:85164463-85164482 None:intergenic 35.0%
TTCTAGGTAGTTCATATGGT+TGG - chr3_1:85164577-85164596 Msa0382530:CDS 35.0%
ATTGTTAGCAAGATTGAAGC+TGG - chr3_1:85164669-85164688 Msa0382530:CDS 35.0%
TGTACATTGTCATTCCAATG+TGG - chr3_1:85164706-85164725 Msa0382530:CDS 35.0%
! CTCTGATTCCTTTTCTTTGA+AGG + chr3_1:85164824-85164843 None:intergenic 35.0%
! CATTCATTTTCTTACCCTCT+CGG + chr3_1:85164887-85164906 None:intergenic 35.0%
GAATGAATATACTCCTACAG+AGG - chr3_1:85164902-85164921 Msa0382530:CDS 35.0%
ATATAATCACTGTCAGGTTC+TGG + chr3_1:85164930-85164949 None:intergenic 35.0%
GCTCTAATATAATCACTGTC+AGG + chr3_1:85164936-85164955 None:intergenic 35.0%
GTTCATGCCAAAATGATGAT+AGG - chr3_1:85164984-85165003 Msa0382530:CDS 35.0%
TGCCAAAATGATGATAGGTA+AGG - chr3_1:85164989-85165008 Msa0382530:CDS 35.0%
GCCAAAATGATGATAGGTAA+GGG - chr3_1:85164990-85165009 Msa0382530:CDS 35.0%
! TCCCTTACCTATCATCATTT+TGG + chr3_1:85164994-85165013 None:intergenic 35.0%
AACGCAGTTCAAATATCTTC+GGG + chr3_1:85165086-85165105 None:intergenic 35.0%
GAACGCAGTTCAAATATCTT+CGG + chr3_1:85165087-85165106 None:intergenic 35.0%
TATTTGAACTGCGTTCTTTG+AGG - chr3_1:85165091-85165110 Msa0382530:CDS 35.0%
! CCATATATTTGTCCTTTTGG+TGG + chr3_1:85165363-85165382 None:intergenic 35.0%
CCACCAAAAGGACAAATATA+TGG - chr3_1:85165360-85165379 Msa0382530:intron 35.0%
TTGTATCACCAATATCTCCA+AGG + chr3_1:85165413-85165432 None:intergenic 35.0%
CTTTGAGTATATGTCCCAAT+TGG + chr3_1:85165496-85165515 None:intergenic 35.0%
CAATTGGGACATATACTCAA+AGG - chr3_1:85165494-85165513 Msa0382530:intron 35.0%
CTTGTATTGGATAATGCATG+AGG + chr3_1:85165551-85165570 None:intergenic 35.0%
AGCAGTTATGGTTCCATTAT+TGG + chr3_1:85165577-85165596 None:intergenic 35.0%
TCAGGAAAACATTCAAATCC+TGG + chr3_1:85165603-85165622 None:intergenic 35.0%
!! AGAATCTTAGCCTTAGTATC+AGG + chr3_1:85165621-85165640 None:intergenic 35.0%
GATACTAAGGCTAAGATTCT+AGG - chr3_1:85165621-85165640 Msa0382530:CDS 35.0%
!!! AGTAACACCTTGTTTTAAGC+AGG - chr3_1:85165748-85165767 Msa0382530:intron 35.0%
ATGGAAATGGAGGTTAAGGA+GGG + chr3_1:85162262-85162281 None:intergenic 40.0%
GTCATGTTGCACTTACTACA+CGG - chr3_1:85162404-85162423 Msa0382530:CDS 40.0%
TCATGTTGCACTTACTACAC+GGG - chr3_1:85162405-85162424 Msa0382530:CDS 40.0%
GATACACTACAAACTCTTGC+CGG - chr3_1:85162455-85162474 Msa0382530:CDS 40.0%
CAATTTCGATCTCTGCAACA+AGG - chr3_1:85162481-85162500 Msa0382530:CDS 40.0%
CGAAATCAGCAAATACACAG+AGG + chr3_1:85162693-85162712 None:intergenic 40.0%
GTCAAACAAGATAACCCCAT+TGG - chr3_1:85163097-85163116 Msa0382530:CDS 40.0%
!! CCCTTTATGACTTGTTCAAC+TGG + chr3_1:85163151-85163170 None:intergenic 40.0%
AGGGCAACATAGTGAATACA+TGG - chr3_1:85163167-85163186 Msa0382530:CDS 40.0%
GGGCAACATAGTGAATACAT+GGG - chr3_1:85163168-85163187 Msa0382530:CDS 40.0%
!!! ATTTTGGAACCGCCTTGTAT+TGG + chr3_1:85163220-85163239 None:intergenic 40.0%
AATGATCCAAACTGGTCACA+AGG - chr3_1:85163271-85163290 Msa0382530:CDS 40.0%
TTTAGTCCTTGTGACCAGTT+TGG + chr3_1:85163280-85163299 None:intergenic 40.0%
CTAAAGAGTCCAGGATTTCA+AGG - chr3_1:85163295-85163314 Msa0382530:CDS 40.0%
! CATCTAGAACATGTGCATCT+TGG + chr3_1:85163372-85163391 None:intergenic 40.0%
! CAAGATGCACATGTTCTAGA+TGG - chr3_1:85163370-85163389 Msa0382530:CDS 40.0%
GTTCCGTATATTCCATTGGA+TGG - chr3_1:85163397-85163416 Msa0382530:CDS 40.0%
TTCCATTGGATGGAGTAGAA+CGG - chr3_1:85163407-85163426 Msa0382530:CDS 40.0%
! GTATCTTCCCAACATTTTCC+CGG + chr3_1:85163439-85163458 None:intergenic 40.0%
!! AACTGGTTGGTCTGTTTACA+CGG - chr3_1:85163498-85163517 Msa0382530:CDS 40.0%
ACAAGAACAACCATCACTCT+TGG - chr3_1:85163553-85163572 Msa0382530:CDS 40.0%
CAAGAACAACCATCACTCTT+GGG - chr3_1:85163554-85163573 Msa0382530:CDS 40.0%
AAGAACAACCATCACTCTTG+GGG - chr3_1:85163555-85163574 Msa0382530:CDS 40.0%
CTATACTTCTTCCATCACCA+GGG + chr3_1:85163750-85163769 None:intergenic 40.0%
ACTATACTTCTTCCATCACC+AGG + chr3_1:85163751-85163770 None:intergenic 40.0%
!! AAGTTGCTAGTTCTGCACAA+TGG - chr3_1:85163833-85163852 Msa0382530:CDS 40.0%
GTGGGATTGATCTTTGTGAT+GGG - chr3_1:85163884-85163903 Msa0382530:intron 40.0%
TGATGGGAGATATGATACCA+TGG - chr3_1:85163900-85163919 Msa0382530:intron 40.0%
CCAAAATCACCTGGGAAATT+TGG + chr3_1:85163979-85163998 None:intergenic 40.0%
! CCAAATTTCCCAGGTGATTT+TGG - chr3_1:85163976-85163995 Msa0382530:intron 40.0%
GGTGCTTCTATTAACAAAGG+TGG - chr3_1:85164177-85164196 Msa0382530:CDS 40.0%
CAAAGATGGGAAAAGCAAGT+TGG - chr3_1:85164276-85164295 Msa0382530:CDS 40.0%
!!! TGTGTTGTTTTGATTTGCCG+TGG + chr3_1:85164370-85164389 None:intergenic 40.0%
CGGCAAATCAAAACAACACA+TGG - chr3_1:85164370-85164389 Msa0382530:CDS 40.0%
TTGTTTAGATCGATCGATGC+TGG - chr3_1:85164402-85164421 Msa0382530:CDS 40.0%
!! GCTGAAAAAGGTCTTGTTAC+TGG - chr3_1:85164462-85164481 Msa0382530:CDS 40.0%
TCGTCGAATAGCGTTTATGT+AGG + chr3_1:85164523-85164542 None:intergenic 40.0%
ATCTTCAGTGACAACTCCTT+TGG + chr3_1:85164651-85164670 None:intergenic 40.0%
AGATTGGCAAAGAAGGACTA+TGG - chr3_1:85164770-85164789 Msa0382530:CDS 40.0%
GTTGAAGCCCTTCAAAGAAA+AGG - chr3_1:85164813-85164832 Msa0382530:CDS 40.0%
TGACAAGTAATCTCTTGGGT+TGG + chr3_1:85164847-85164866 None:intergenic 40.0%
AGAGACAGTGAGATTGCAAT+AGG - chr3_1:85165300-85165319 Msa0382530:intron 40.0%
TTACTGGTGGCTATATGGTT+TGG + chr3_1:85165336-85165355 None:intergenic 40.0%
GTCTATTACTGGTGGCTATA+TGG + chr3_1:85165341-85165360 None:intergenic 40.0%
!! TTTTGGTGGTCTATTACTGG+TGG + chr3_1:85165349-85165368 None:intergenic 40.0%
ACCAGTAATAGACCACCAAA+AGG - chr3_1:85165348-85165367 Msa0382530:intron 40.0%
!! TCCTTTTGGTGGTCTATTAC+TGG + chr3_1:85165352-85165371 None:intergenic 40.0%
ATGGATTTAGACGTGCACTA+TGG - chr3_1:85165379-85165398 Msa0382530:intron 40.0%
TATGAGCACCTTGGAGATAT+TGG - chr3_1:85165402-85165421 Msa0382530:intron 40.0%
! ATCGTTTTGCTGAGACCAAT+TGG - chr3_1:85165478-85165497 Msa0382530:intron 40.0%
! TCGTTTTGCTGAGACCAATT+GGG - chr3_1:85165479-85165498 Msa0382530:intron 40.0%
AAATCCTGGAAGAGCAGTTA+TGG + chr3_1:85165589-85165608 None:intergenic 40.0%
ACATTCAGTTTCTCTCCACA+TGG + chr3_1:85165687-85165706 None:intergenic 40.0%
CATGGAAATGGAGGTTAAGG+AGG + chr3_1:85162263-85162282 None:intergenic 45.0%
GCAGAGATCGAAATTGCATC+CGG + chr3_1:85162477-85162496 None:intergenic 45.0%
! GATATACCTCTGGCTTGCAT+TGG + chr3_1:85162803-85162822 None:intergenic 45.0%
GAATGATAGGTAGCCCGAAA+TGG - chr3_1:85163020-85163039 Msa0382530:intron 45.0%
CAATTAGAGTCGCTCCAATG+GGG + chr3_1:85163114-85163133 None:intergenic 45.0%
CCAATTAGAGTCGCTCCAAT+GGG + chr3_1:85163115-85163134 None:intergenic 45.0%
TCCAATTAGAGTCGCTCCAA+TGG + chr3_1:85163116-85163135 None:intergenic 45.0%
GTGGATCATCGTCCAATACA+AGG - chr3_1:85163205-85163224 Msa0382530:CDS 45.0%
GATCATCGTCCAATACAAGG+CGG - chr3_1:85163208-85163227 Msa0382530:CDS 45.0%
TCACAAGGACTAAAGAGTCC+AGG - chr3_1:85163286-85163305 Msa0382530:CDS 45.0%
TGAGGAACTCCTTGAAATCC+TGG + chr3_1:85163307-85163326 None:intergenic 45.0%
TACCGTTCTACTCCATCCAA+TGG + chr3_1:85163412-85163431 None:intergenic 45.0%
GTATGTGCCGGGAAAATGTT+GGG - chr3_1:85163429-85163448 Msa0382530:CDS 45.0%
GGTGGGATTGATCTTTGTGA+TGG - chr3_1:85163883-85163902 Msa0382530:CDS 45.0%
ATATCATGCCATGGCTCTCT+AGG + chr3_1:85164204-85164223 None:intergenic 45.0%
AACTAGAAGGACCTGTTGCA+TGG - chr3_1:85164232-85164251 Msa0382530:CDS 45.0%
ACTAGAAGGACCTGTTGCAT+GGG - chr3_1:85164233-85164252 Msa0382530:CDS 45.0%
CGAAACATGCTTGAAGGTAG+TGG + chr3_1:85164315-85164334 None:intergenic 45.0%
TCGTGTATCGAATGTTGCCA+CGG - chr3_1:85164350-85164369 Msa0382530:CDS 45.0%
TGCTTTGCACCTCATACCAA+AGG - chr3_1:85164632-85164651 Msa0382530:CDS 45.0%
GTGACAACTCCTTTGGTATG+AGG + chr3_1:85164644-85164663 None:intergenic 45.0%
! GCACTTTCAGGTATACCTTC+TGG + chr3_1:85164732-85164751 None:intergenic 45.0%
! GCTTGAACTGAAGCACTTTC+AGG + chr3_1:85164744-85164763 None:intergenic 45.0%
TTATTGCCTTGGAAACCGAG+AGG - chr3_1:85164869-85164888 Msa0382530:CDS 45.0%
TATTGCCTTGGAAACCGAGA+GGG - chr3_1:85164870-85164889 Msa0382530:CDS 45.0%
!! TGGAGGAAGGTACTCAGATT+TGG + chr3_1:85165649-85165668 None:intergenic 45.0%
AAGGGAACATGCACAAGCGT+GGG - chr3_1:85162732-85162751 Msa0382530:CDS 50.0%
TCAATGCCAATGCAAGCCAG+AGG - chr3_1:85162794-85162813 Msa0382530:CDS 50.0%
CCCATTGGAGCGACTCTAAT+TGG - chr3_1:85163112-85163131 Msa0382530:CDS 50.0%
TGGAGTAGAACGGTATGTGC+CGG - chr3_1:85163417-85163436 Msa0382530:CDS 50.0%
GGTATGTGCCGGGAAAATGT+TGG - chr3_1:85163428-85163447 Msa0382530:CDS 50.0%
AAGAAGCTCCCCAAGAGTGA+TGG + chr3_1:85163566-85163585 None:intergenic 50.0%
TTCCATCACCAGGGTTACGT+GGG + chr3_1:85163741-85163760 None:intergenic 50.0%
CACAACACATCCCATGCAAC+AGG + chr3_1:85164246-85164265 None:intergenic 50.0%
CGGCTTCTGTTGGATCTTGA+GGG + chr3_1:85164443-85164462 None:intergenic 50.0%
!!! CCTTTTTCAGCGGCTTCTGT+TGG + chr3_1:85164453-85164472 None:intergenic 50.0%
CCAACAGAAGCCGCTGAAAA+AGG - chr3_1:85164450-85164469 Msa0382530:CDS 50.0%
GTCATTCCAATGTGGCCAGA+AGG - chr3_1:85164714-85164733 Msa0382530:CDS 50.0%
GGTATACCTTCTGGCCACAT+TGG + chr3_1:85164723-85164742 None:intergenic 50.0%
TCTTACCCTCTCGGTTTCCA+AGG + chr3_1:85164878-85164897 None:intergenic 50.0%
GCACTATGGTATGAGCACCT+TGG - chr3_1:85165393-85165412 Msa0382530:intron 50.0%
GGAACCATAACTGCTCTTCC+AGG - chr3_1:85165582-85165601 Msa0382530:CDS 50.0%
AGGTGGTGAGAATTGGAGGA+AGG + chr3_1:85165662-85165681 None:intergenic 50.0%
CATGGCTAGGTGGTGAGAAT+TGG + chr3_1:85165669-85165688 None:intergenic 50.0%
ATTCTCACCACCTAGCCATG+TGG - chr3_1:85165669-85165688 Msa0382530:exon 50.0%
TTTCTCTCCACATGGCTAGG+TGG + chr3_1:85165679-85165698 None:intergenic 50.0%
CAGTTTCTCTCCACATGGCT+AGG + chr3_1:85165682-85165701 None:intergenic 50.0%
CAAGGGAACATGCACAAGCG+TGG - chr3_1:85162731-85162750 Msa0382530:CDS 55.0%
AGGGAACATGCACAAGCGTG+GGG - chr3_1:85162733-85162752 Msa0382530:CDS 55.0%
GGAGTAGAACGGTATGTGCC+GGG - chr3_1:85163418-85163437 Msa0382530:CDS 55.0%
! GTTTTGTGCCCACGTAACCC+TGG - chr3_1:85163730-85163749 Msa0382530:CDS 55.0%
CTTCCATCACCAGGGTTACG+TGG + chr3_1:85163742-85163761 None:intergenic 55.0%
AAGGTGGTCCTAGAGAGCCA+TGG - chr3_1:85164193-85164212 Msa0382530:CDS 55.0%
!! ATCGATGCTGGTGCTGCTTC+TGG - chr3_1:85164414-85164433 Msa0382530:CDS 55.0%
GCGGCTTCTGTTGGATCTTG+AGG + chr3_1:85164444-85164463 None:intergenic 55.0%
! TCAGGTTCTGGTGCCTCTGT+AGG + chr3_1:85164918-85164937 None:intergenic 55.0%
GGCTAGGTGGTGAGAATTGG+AGG + chr3_1:85165666-85165685 None:intergenic 55.0%
TGCCCACGTAACCCTGGTGA+TGG - chr3_1:85163736-85163755 Msa0382530:CDS 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 85162232 85165848 85162232 ID=Msa0382530;Name=Msa0382530
chr3_1 mRNA 85162232 85165848 85162232 ID=Msa0382530-mRNA-1;Parent=Msa0382530;Name=Msa0382530-mRNA-1;_AED=0.04;_eAED=0.04;_QI=85|0.75|1|1|0.75|0.6|5|165|799
chr3_1 exon 85162232 85162842 85162232 ID=Msa0382530-mRNA-1:exon:22297;Parent=Msa0382530-mRNA-1
chr3_1 exon 85163075 85163902 85163075 ID=Msa0382530-mRNA-1:exon:22296;Parent=Msa0382530-mRNA-1
chr3_1 exon 85164092 85165121 85164092 ID=Msa0382530-mRNA-1:exon:22295;Parent=Msa0382530-mRNA-1
chr3_1 exon 85165578 85165708 85165578 ID=Msa0382530-mRNA-1:exon:22294;Parent=Msa0382530-mRNA-1
chr3_1 exon 85165799 85165848 85165799 ID=Msa0382530-mRNA-1:exon:22293;Parent=Msa0382530-mRNA-1
chr3_1 five_prime_UTR 85165799 85165848 85165799 ID=Msa0382530-mRNA-1:five_prime_utr;Parent=Msa0382530-mRNA-1
chr3_1 five_prime_UTR 85165674 85165708 85165674 ID=Msa0382530-mRNA-1:five_prime_utr;Parent=Msa0382530-mRNA-1
chr3_1 CDS 85165578 85165673 85165578 ID=Msa0382530-mRNA-1:cds;Parent=Msa0382530-mRNA-1
chr3_1 CDS 85164092 85165121 85164092 ID=Msa0382530-mRNA-1:cds;Parent=Msa0382530-mRNA-1
chr3_1 CDS 85163075 85163902 85163075 ID=Msa0382530-mRNA-1:cds;Parent=Msa0382530-mRNA-1
chr3_1 CDS 85162397 85162842 85162397 ID=Msa0382530-mRNA-1:cds;Parent=Msa0382530-mRNA-1
chr3_1 three_prime_UTR 85162232 85162396 85162232 ID=Msa0382530-mRNA-1:three_prime_utr;Parent=Msa0382530-mRNA-1
Gene Sequence

>Msa0382530

ATGTTGCACTTACTACACGGGAAGCTTGATGTGACTATATATGAGGTCGATACACTACAAACTCTTGCCGGATGCAATTTCGATCTCTGCAACAAGATTATTGGGATGGGTCTATATGCAACAGTTGATTTAGACAAAGCAAGAGTTGGAAGAACTAGAATGATAGGTAGCCCGAAATGGAATGAAACCTTTCACATTTACTCTGCACATTCAATCTCCAACATTATATTCACTGTCAAACAAGATAACCCCATTGGAGCGACTCTAATTGGAAGAGCTTATGTTCCAGTTGAACAAGTCATAAAGGGCAACATAGTGAATACATGGGTTAATATATTAGATGTGGATCATCGTCCAATACAAGGCGGTTCCAAAATCCATGTTCAAATACAATTCTCACATGTTAAAAATGATCCAAACTGGTCACAAGGACTAAAGAGTCCAGGATTTCAAGGAGTTCCTCACACATTCTTTAAACAAAATAATGGTTGCCAAATTACTCTTTACCAAGATGCACATGTTCTAGATGGTTCTGTTCCGTATATTCCATTGGATGGAGTAGAACGGTATGTGCCGGGAAAATGTTGGGAAGATACTTACAATGCAATTAATGATGCTAAGCATTTTATTTGCATAACTGGTTGGTCTGTTTACACGGAAATAACCTTGATTAGAGATCCAAACAAGTCAACAAGAACAACCATCACTCTTGGGGAGCTTCTTAAGAAGAAAGCCAATGAAGGTGTTAATGTTCTTATGCTTGTTTGGGATGACAGAACTTCTGTTCCTGACTTTAAGAAAGATGGCTTGATGGCAACTCATGATCAAGAAATAGCAGAGTATTTTAGAAACACAAATGTGCATTGTGTTTTGTGCCCACGTAACCCTGGTGATGGAAGAAGTATAGTTCAAGGTTTTGAAATTTCAACTATGTTTACTCATCACCAGAAGACTATAATTGTTGACAGCAAAGTTGCTAGTTCTGCACAATGGAAGAAGAGAACAATCACAAGTTTTGTTGGTGGGATTGATCTTTGTGATGGGAGATATGATACCATGGAACATCCTTTGTTTTCAACTTTGAATACAATTCATCATGATGATTTTCATCAACCAAATTTCCCAGGTGCTTCTATTAACAAAGGTGGTCCTAGAGAGCCATGGCATGATATTCATTGTAAACTAGAAGGACCTGTTGCATGGGATGTGTTGTGCAATTTTGAGCAAAGATGGGAAAAGCAAGTTGGAAAGCAATTAATTCCACTACCTTCAAGCATGTTTCGTGAATATGATATTGCTCGTGTATCGAATGTTGCCACGGCAAATCAAAACAACACATGGAATGTTCAATTGTTTAGATCGATCGATGCTGGTGCTGCTTCTGGCTTCCCTCAAGATCCAACAGAAGCCGCTGAAAAAGGTCTTGTTACTGGAAAAGATAACATCATTGATAGAAGCATTCAAGATGCCTACATAAACGCTATTCGACGAGCTAAGAACTTCGTCTACATTGAAAATCAGTATTTTCTAGGTAGTTCATATGGTTGGAAATCATCGGATATTAAAGTTGAGGATATTGGTGCTTTGCACCTCATACCAAAGGAGTTGTCACTGAAGATTGTTAGCAAGATTGAAGCTGGAGAGAGATTCTCTGTGTACATTGTCATTCCAATGTGGCCAGAAGGTATACCTGAAAGTGCTTCAGTTCAAGCAATATTAGATTGGCAAAGAAGGACTATGGAGATGATGTATTCTGACATAGTTGAAGCCCTTCAAAGAAAAGGAATCAGAGCCAACCCAAGAGATTACTTGTCATTTTATTGCCTTGGAAACCGAGAGGGTAAGAAAATGAATGAATATACTCCTACAGAGGCACCAGAACCTGACAGTGATTATATTAGAGCACAAAATTCTAGAAGATTCATGATATATGTTCATGCCAAAATGATGATAGTTGATGATGAATACATAATCATTGGTTCTGCCAACATAAATCAAAGATCAATGGATGGTGCTAGAGACAGTGAGATTGCAATAGGTGCATTTCAACCAAACCATATAGCCACCAGTAATAGACCACCAAAAGGACAAATATATGGATTTAGACGTGCACTATGGTATGAGCACCTTGGAGATATTGGTGATACAAGCTTCTTTGAAAATCCAGAAAGTTTGAATTGCATTAAGCTTGTAAATCGTTTTGCTGAGACCAATTGGGACATATACTCAAAGGATGCATTTGATGAATACAGATCATTTCATCACCTCATGCATTATCCAATACAAGTAACCAATAATGGAACCATAACTGCTCTTCCAGGATTTGAATGTTTTCCTGATACTAAGGCTAAGATTCTAGGTTCCAAATCTGAGTACCTTCCTCCAATTCTCACCACCTAG
Protein sequence

>Msa0382530

MLHLLHGKLDVTIYEVDTLQTLAGCNFDLCNKIIGMGLYATVDLDKARVGRTRMIGSPKWNETFHIYSAHSISNIIFTVKQDNPIGATLIGRAYVPVEQVIKGNIVNTWVNILDVDHRPIQGGSKIHVQIQFSHVKNDPNWSQGLKSPGFQGVPHTFFKQNNGCQITLYQDAHVLDGSVPYIPLDGVERYVPGKCWEDTYNAINDAKHFICITGWSVYTEITLIRDPNKSTRTTITLGELLKKKANEGVNVLMLVWDDRTSVPDFKKDGLMATHDQEIAEYFRNTNVHCVLCPRNPGDGRSIVQGFEISTMFTHHQKTIIVDSKVASSAQWKKRTITSFVGGIDLCDGRYDTMEHPLFSTLNTIHHDDFHQPNFPGASINKGGPREPWHDIHCKLEGPVAWDVLCNFEQRWEKQVGKQLIPLPSSMFREYDIARVSNVATANQNNTWNVQLFRSIDAGAASGFPQDPTEAAEKGLVTGKDNIIDRSIQDAYINAIRRAKNFVYIENQYFLGSSYGWKSSDIKVEDIGALHLIPKELSLKIVSKIEAGERFSVYIVIPMWPEGIPESASVQAILDWQRRTMEMMYSDIVEALQRKGIRANPRDYLSFYCLGNREGKKMNEYTPTEAPEPDSDYIRAQNSRRFMIYVHAKMMIVDDEYIIIGSANINQRSMDGARDSEIAIGAFQPNHIATSNRPPKGQIYGFRRALWYEHLGDIGDTSFFENPESLNCIKLVNRFAETNWDIYSKDAFDEYRSFHHLMHYPIQVTNNGTITALPGFECFPDTKAKILGSKSEYLPPILTT*